AlfalfaGEDB | MsG0880042633.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042633.01

KEGG: K15718
GO: GO:0005515 GO:0016491 GO:0016702 GO:0046872 GO:0055114
PFAM: PF00305 PF01477

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042633.01.T01	GAU51607.1	85.369	868	86	2	1	827	1	868	0	1504

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042633.01.T01	P38414	81.128	869	119	4	1	827	1	866	0	1463

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042633.01.T01	G7LIY0	91.359	868	34	2	1	827	1	868	0.0	1628

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048509.01	MsG0880042633.01	0.880959	3.569133e-70	2.052388e-66
MsG0080048889.01	MsG0880042633.01	0.803629	3.181766e-49	1.606763e-46
MsG0180000367.01	MsG0880042633.01	0.814371	1.594458e-51	1.067927e-48
MsG0180000497.01	MsG0880042633.01	0.811113	8.233515e-51	5.053133e-48
MsG0180001079.01	MsG0880042633.01	0.818440	1.957760e-52	1.465690e-49
MsG0180001497.01	MsG0880042633.01	0.828246	1.000322e-54	9.887064e-52
MsG0180001499.01	MsG0880042633.01	0.807071	6.045938e-50	3.335437e-47
MsG0180001503.01	MsG0880042633.01	0.821663	3.582944e-53	2.933382e-50
MsG0180001513.01	MsG0880042633.01	0.808785	2.611557e-50	1.506749e-47
MsG0180001515.01	MsG0880042633.01	0.823939	1.057028e-53	9.231607e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880042633.01.T01	MTR_8g018550	91.359	868	34	2	1	827	1	868	1628
MsG0880042633.01.T01	MTR_8g018570	82.299	870	111	4	1	827	1	870	1482
MsG0880042633.01.T01	MTR_8g020990	80.645	868	127	2	1	827	1	868	1434
MsG0880042633.01.T01	MTR_8g018690	78.391	870	140	4	1	827	1	865	1397
MsG0880042633.01.T01	MTR_8g018430	75.930	860	162	3	9	827	6	861	1368
MsG0880042633.01.T01	MTR_8g018520	76.037	868	167	2	1	827	1	868	1364
MsG0880042633.01.T01	MTR_8g018690	76.092	870	140	5	1	827	1	845	1344
MsG0880042633.01.T01	MTR_8g018510	74.023	870	182	5	1	827	1	869	1334
MsG0880042633.01.T01	MTR_8g018450	70.336	863	172	9	9	827	6	828	1226
MsG0880042633.01.T01	MTR_2g099570	67.319	869	234	5	1	827	1	861	1204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880042633.01.T01	AT1G55020	52.887	866	332	11	13	827	19	859	914
MsG0880042633.01.T01	AT3G22400	51.941	876	336	11	14	827	34	886	913
MsG0880042633.01.T01	AT1G72520	42.144	821	417	10	57	827	114	926	648
MsG0880042633.01.T01	AT1G17420	42.509	821	413	12	57	827	108	919	640
MsG0880042633.01.T01	AT3G45140	40.843	830	404	19	57	827	95	896	586
MsG0880042633.01.T01	AT3G45140	42.393	769	366	17	118	827	4	754	573
MsG0880042633.01.T01	AT1G67560	39.611	823	422	16	64	827	111	917	557

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Find 230 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGTGGATGGATCCA+TGG	0.554216	8:+11741303	None:intergenic
AAACTATCACCTTGAGGGTG+TGG	0.543185	8:+11739583	None:intergenic
AAAGAGGCCTTCAAGAGGTT+TGG	0.382690	8:-11738244	MsG0880042633.01.T01:CDS
AAAGTATATGGCATCTTCAC+TGG	0.496464	8:+11738148	None:intergenic
AAATGTCTTGGTCAATGCAG+AGG	0.620032	8:-11739226	MsG0880042633.01.T01:CDS
AACAAATAGGCATCTTAGTG+TGG	0.616014	8:-11739316	MsG0880042633.01.T01:CDS
AACAGGACTAGAATGTTACA+AGG	0.650048	8:+11737907	None:intergenic
AACAGGAGAGCGCAAGGAAT+GGG	0.484527	8:-11740919	MsG0880042633.01.T01:CDS
AACATCACCGATAGCACCTA+TGG	0.510702	8:+11742561	None:intergenic
AACCAAAAGAGGCCTTCAAG+AGG	0.638282	8:-11738249	MsG0880042633.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTAGATAGCCAAAAATT+TGG	-	Chr8:11740698-11740717	MsG0880042633.01.T01:intron	30.0%
AATAAATGCAAGTGAGACAA+AGG	-	Chr8:11740991-11741010	MsG0880042633.01.T01:CDS	30.0%
ACAACAAAACCTTACATCTT+TGG	-	Chr8:11741583-11741602	MsG0880042633.01.T01:intron	30.0%
ACACATCATCAAAAAACTCT+CGG	-	Chr8:11740539-11740558	MsG0880042633.01.T01:intron	30.0%
AGCATTAAAGATGACTTCAT+TGG	-	Chr8:11737967-11737986	MsG0880042633.01.T01:three_prime_UTR	30.0%
AGGTAAATCTTAATGAGTTG+CGG	+	Chr8:11738865-11738884	None:intergenic	30.0%
ATAGAATTGAAGGTGACAAT+TGG	-	Chr8:11742386-11742405	MsG0880042633.01.T01:intron	30.0%
ATTGAATCAACTTTCTTGTG+GGG	-	Chr8:11741473-11741492	MsG0880042633.01.T01:CDS	30.0%
ATTTACAACAACAAAAGCCT+TGG	+	Chr8:11741179-11741198	None:intergenic	30.0%
CAACCAAAAAACACATGTTT+AGG	+	Chr8:11739951-11739970	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	11737824	11742869	11737824	ID=MsG0880042633.01;Name=MsG0880042633.01
Chr8	mRNA	11737824	11742869	11737824	ID=MsG0880042633.01.T01;Parent=MsG0880042633.01;Name=MsG0880042633.01.T01;_AED=0.49;_eAED=0.49;_QI=153\|0.75\|0.77\|1\|0.87\|0.88\|9\|260\|827
Chr8	exon	11737824	11738840	11737824	ID=MsG0880042633.01.T01:exon:3543;Parent=MsG0880042633.01.T01
Chr8	exon	11739114	11739377	11739114	ID=MsG0880042633.01.T01:exon:3542;Parent=MsG0880042633.01.T01
Chr8	exon	11739463	11739766	11739463	ID=MsG0880042633.01.T01:exon:3541;Parent=MsG0880042633.01.T01
Chr8	exon	11739926	11740013	11739926	ID=MsG0880042633.01.T01:exon:3540;Parent=MsG0880042633.01.T01
Chr8	exon	11740133	11740218	11740133	ID=MsG0880042633.01.T01:exon:3539;Parent=MsG0880042633.01.T01
Chr8	exon	11740321	11740539	11740321	ID=MsG0880042633.01.T01:exon:3538;Parent=MsG0880042633.01.T01
Chr8	exon	11740778	11741018	11740778	ID=MsG0880042633.01.T01:exon:3537;Parent=MsG0880042633.01.T01
Chr8	exon	11741241	11741527	11741241	ID=MsG0880042633.01.T01:exon:3536;Parent=MsG0880042633.01.T01
Chr8	exon	11742479	11742869	11742479	ID=MsG0880042633.01.T01:exon:3535;Parent=MsG0880042633.01.T01
Chr8	five_prime_UTR	11742717	11742869	11742717	ID=MsG0880042633.01.T01:five_prime_utr;Parent=MsG0880042633.01.T01
Chr8	CDS	11742479	11742716	11742479	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	CDS	11741241	11741527	11741241	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	CDS	11740778	11741018	11740778	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	CDS	11740321	11740539	11740321	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	CDS	11740133	11740218	11740133	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	CDS	11739926	11740013	11739926	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	CDS	11739463	11739766	11739463	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	CDS	11739114	11739377	11739114	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	CDS	11738084	11738840	11738084	ID=MsG0880042633.01.T01:cds;Parent=MsG0880042633.01.T01
Chr8	three_prime_UTR	11737824	11738083	11737824	ID=MsG0880042633.01.T01:three_prime_utr;Parent=MsG0880042633.01.T01

Gene Sequence

>MsG0880042633.01.T01

ATGACTTCATTGGTGAAAGGTCTCTTTGATAAGCACGAAAAGGTGAAGGGAACTGTGGTGTTGATGCAAAAGAATGTGTTAGACATCAACGCACTCACTGCAGCTCAAAGCCCTACTGGTATCATTGGTGGTGCCATAGGTGCTATCGGTGATGTTGCTGGCAATATACTTGACACTGCCACTTCCTTCTTAGGCCGTTCTATAGCTCTCAAGTTGATTAGTGCTACAAGTGCTGATGGAACTGGAAAAGGAAAAGTTGGACAGGAAACATTTCTGAAAGGTATTCTTACCTCCATACCAACATTGGGAGACAAACAAAATGCTTTCAGTATTAATTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCTTTTTACATCAAGAATTATATGCAAGGTGAATTCTTCCTTGTGAGTTTGACACTTGAAGATATTCCAAACCATGGATCCATCCACTTTGTTTGCAACTCATGGATTTACAATTCTAAAAAGTACAAAACCGACCGCATCTTCTTTGCCAACAAGACATACCTTCCAAGTGAAACACCGGCTCCATTAGTGTACTATAGACAAGAAGAGTTGAAGACTTTAAGAGGGGATGGAACAGGAGAGCGCAAGGAATGGGAAAGAATATATGATTATGATGTCTACAATGATTTGGGTGAGCCTGACTCGAAACCTCAATTGGCTCGTCAAATTCTTGGGGGATCGAGCGATTTCCCTTACCCTCGAAGGGGAAGAACCGGCAGAAGAAAAACTAAAACAGCATCTCAGAATGTCATACCTCAATTGAGATCTGTAGTTACGTTACAACTCAATAACCCCGAGTTTAACACCTTTCAAGATGTGCGCTCTCTCTACGAGGGTGGAATTAAGCTTCCTACTGATGTACTAAGCCAGATTAGTCCAATACCATTGTTCAAGGAACTTTTCCGATCTGATGGTGAACAAGCACTTAAGTTTCCACCACCAAAAGTGATTCAAGTGGACCATTCTGCATGGCAGACTGATGAGGAATTTGCAAGGGAGATGATTGCTGGGGTGAATCCACACATCATCAAAAAACTCTCGGAGTTTCCACCAAAGAGCAAGCTAGATAGCCAAAAATTTGGTGATAACACCAGCACCATAACTAAAGAAAACTTGGAGCCAAACATGGGCTATCCAAACAATAGATTGTACATACTTGATCACCACGACCCGCTCTTTCCATATTTGAGGAAAATAAATGCAAGTGAGACAAAGGCCTATGCTACTAGAACCATTCTTTTCTTGCAAGATAATGGAACTTTGAAGCCACTGGCCATTGAACTAAGCAGGCCACACCCTCAAGGTGATAGTTTTGGTCCTGTTAGCAATGTTTACTTGCCCGCAAGTGAAGGTGTTGAAGCATCAGTTTGGCTCCTTGCCAAGGCTTTTGTTGTTGTAAATGACTCCTGCTATCACCAACTTGTCAGCCATTGGTTGAATACCCATGCTGTTGTTGAGCCATTCGTCATAGCAACAAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTCTTGCTTCCACATTATCGTGACACAATGAACATAAATGCACTTGCACGAAATGTCTTGGTCAATGCAGAGGGTATTATTGAATCAACTTTCTTGTGGGGAAATTATGCTTTGGAAATGTCTGCTGTTGTTTACAAGGATTGGAATTTCATTGAGCAAGGACTTCCTAATGATCTAATCAAAAGAGGAGTAGCTGTTGAGGATCCAGCCTCTCCTACCGGTCTCCGCCTTCTGATAGAGGATTATCCTTATGCTTCTGATGGACTAGAAATATGGGCTGCTATTAAGTCATGGGTTGGTGAATATGTGAACTTCTATTACAAGTCAGATGAAGCTATTGCACAAGATTCTGAACTCCAAGCATTCTGGAAGGAACTTGTAGAGGTGGGTCATGGTGACTTAAAGAATGCCACATGGTGGTTTAAGATGCAAACTCGTGCGGAGTTGATCGAAGCTTCCACCATCCTTATATGGATTGCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAATATCCGTATGGAGGATATATCCTTAATCGACCAACAAAAAGTAGAAGATTCATGCCTGAGAAAGGATCACCTGAGTATGATGAGCTCGCTAAGGATTACCAGAAGTCTTATTTGAGGACAATCACACCAAAGAATGATACTCTTACTGACTTGACCATTATAGAGGTCTTGTCAAGGCATGCTTCTGATGAGCAATACCTCGGAGATAGAATTGAAGGTGACAATTGGACTTCTGATACACAACCAAAAGAGGCCTTCAAGAGGTTTGGAAAGAAGTTGGCTGAAATTGAACAGAAACTCACTCAAAGGAACAATGATGAGACATTGAGGAATCGGTATGGACCAGTGAAGATGCCATATACTTTGCTTTATCCTTCTAGTGAAGAAGGATTGACTTGCCGAGGCATTCCTAATAGTATCTCCATTTAA

Protein sequence

>MsG0880042633.01.T01

MTSLVKGLFDKHEKVKGTVVLMQKNVLDINALTAAQSPTGIIGGAIGAIGDVAGNILDTATSFLGRSIALKLISATSADGTGKGKVGQETFLKGILTSIPTLGDKQNAFSINFEWDSDMGIPGAFYIKNYMQGEFFLVSLTLEDIPNHGSIHFVCNSWIYNSKKYKTDRIFFANKTYLPSETPAPLVYYRQEELKTLRGDGTGERKEWERIYDYDVYNDLGEPDSKPQLARQILGGSSDFPYPRRGRTGRRKTKTASQNVIPQLRSVVTLQLNNPEFNTFQDVRSLYEGGIKLPTDVLSQISPIPLFKELFRSDGEQALKFPPPKVIQVDHSAWQTDEEFAREMIAGVNPHIIKKLSEFPPKSKLDSQKFGDNTSTITKENLEPNMGYPNNRLYILDHHDPLFPYLRKINASETKAYATRTILFLQDNGTLKPLAIELSRPHPQGDSFGPVSNVYLPASEGVEASVWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYALEMSAVVYKDWNFIEQGLPNDLIKRGVAVEDPASPTGLRLLIEDYPYASDGLEIWAAIKSWVGEYVNFYYKSDEAIAQDSELQAFWKELVEVGHGDLKNATWWFKMQTRAELIEASTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRFMPEKGSPEYDELAKDYQKSYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGDRIEGDNWTSDTQPKEAFKRFGKKLAEIEQKLTQRNNDETLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI*