Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026771.01.T01 | XP_013457776.1 | 96.739 | 184 | 6 | 0 | 1 | 184 | 119 | 302 | 1.95E-127 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026771.01.T01 | Q93VK9 | 42.473 | 186 | 98 | 4 | 2 | 184 | 133 | 312 | 8.49E-37 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026771.01.T01 | A0A072UQ27 | 96.739 | 184 | 6 | 0 | 1 | 184 | 119 | 302 | 9.31e-128 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049059.01 | MsG0580026771.01 | 0.817951 | 2.526554e-52 | 1.865957e-49 |
| MsG0180001006.01 | MsG0580026771.01 | 0.813050 | 3.114964e-51 | 2.012785e-48 |
| MsG0180001043.01 | MsG0580026771.01 | 0.801490 | 8.785418e-49 | 4.201144e-46 |
| MsG0180001294.01 | MsG0580026771.01 | 0.803646 | 3.156096e-49 | 1.594501e-46 |
| MsG0180001551.01 | MsG0580026771.01 | 0.803176 | 3.950307e-49 | 1.971809e-46 |
| MsG0180002912.01 | MsG0580026771.01 | 0.816308 | 5.913670e-52 | 4.175691e-49 |
| MsG0180003337.01 | MsG0580026771.01 | 0.817449 | 3.279542e-52 | 2.389105e-49 |
| MsG0180003409.01 | MsG0580026771.01 | 0.836394 | 9.603249e-57 | 1.208629e-53 |
| MsG0180003864.01 | MsG0580026771.01 | 0.822263 | 2.600727e-53 | 2.166003e-50 |
| MsG0180004388.01 | MsG0580026771.01 | 0.832097 | 1.148349e-55 | 1.270603e-52 |
| MsG0180004651.01 | MsG0580026771.01 | 0.819901 | 9.104771e-53 | 7.097623e-50 |
| MsG0180005842.01 | MsG0580026771.01 | 0.815301 | 9.916318e-52 | 6.811008e-49 |
| MsG0180005860.01 | MsG0580026771.01 | 0.804020 | 2.639579e-49 | 1.346472e-46 |
| MsG0180005878.01 | MsG0580026771.01 | 0.836295 | 1.017788e-56 | 1.277317e-53 |
| MsG0180005944.01 | MsG0580026771.01 | 0.813131 | 2.989757e-51 | 1.936070e-48 |
| MsG0180006016.01 | MsG0580026771.01 | 0.813701 | 2.239923e-51 | 1.473291e-48 |
| MsG0180006069.01 | MsG0580026771.01 | 0.822141 | 2.776110e-53 | 2.303984e-50 |
| MsG0180006235.01 | MsG0580026771.01 | 0.834733 | 2.526777e-56 | 3.024753e-53 |
| MsG0280006313.01 | MsG0580026771.01 | 0.833763 | 4.423643e-56 | 5.144340e-53 |
| MsG0280006375.01 | MsG0580026771.01 | 0.811533 | 6.675972e-51 | 4.142915e-48 |
| MsG0280011070.01 | MsG0580026771.01 | 0.818343 | 2.059974e-52 | 1.538027e-49 |
| MsG0280011086.01 | MsG0580026771.01 | 0.824451 | 8.016927e-54 | 7.103078e-51 |
| MsG0280011141.01 | MsG0580026771.01 | 0.805571 | 1.251939e-49 | 6.645941e-47 |
| MsG0280011446.01 | MsG0580026771.01 | 0.813329 | 2.704484e-51 | 1.760911e-48 |
| MsG0380012471.01 | MsG0580026771.01 | 0.807046 | 6.119209e-50 | 3.373734e-47 |
| MsG0380012528.01 | MsG0580026771.01 | 0.839241 | 1.783049e-57 | 2.447490e-54 |
| MsG0380013754.01 | MsG0580026771.01 | 0.817864 | 2.642863e-52 | 1.947309e-49 |
| MsG0380014365.01 | MsG0580026771.01 | 0.810357 | 1.200259e-50 | 7.219406e-48 |
| MsG0480018641.01 | MsG0580026771.01 | 0.815088 | 1.105707e-51 | 7.550361e-49 |
| MsG0480018970.01 | MsG0580026771.01 | 0.815905 | 7.274219e-52 | 5.079621e-49 |
| MsG0480019816.01 | MsG0580026771.01 | 0.800209 | 1.604170e-48 | 7.426163e-46 |
| MsG0480020591.01 | MsG0580026771.01 | 0.812005 | 5.268727e-51 | 3.310990e-48 |
| MsG0480021772.01 | MsG0580026771.01 | 0.838603 | 2.606991e-57 | 3.509506e-54 |
| MsG0480021953.01 | MsG0580026771.01 | 0.844709 | 6.391740e-59 | 1.040703e-55 |
| MsG0480022480.01 | MsG0580026771.01 | 0.840429 | 8.743446e-58 | 1.245080e-54 |
| MsG0480022971.01 | MsG0580026771.01 | 0.804238 | 2.377428e-49 | 1.219478e-46 |
| MsG0480023088.01 | MsG0580026771.01 | 0.803428 | 3.502150e-49 | 1.759473e-46 |
| MsG0480023245.01 | MsG0580026771.01 | 0.806888 | 6.610312e-50 | 3.629567e-47 |
| MsG0480023412.01 | MsG0580026771.01 | 0.809794 | 1.586979e-50 | 9.406287e-48 |
| MsG0480023707.01 | MsG0580026771.01 | 0.822203 | 2.686101e-53 | 2.233219e-50 |
| MsG0580024353.01 | MsG0580026771.01 | 0.822659 | 2.104745e-53 | 1.772845e-50 |
| MsG0580024563.01 | MsG0580026771.01 | 0.811398 | 7.141522e-51 | 4.416097e-48 |
| MsG0580024618.01 | MsG0580026771.01 | 0.813101 | 3.035762e-51 | 1.964213e-48 |
| MsG0580025134.01 | MsG0580026771.01 | 0.812181 | 4.824060e-51 | 3.046074e-48 |
| MsG0380015713.01 | MsG0580026771.01 | 0.801374 | 9.280139e-49 | 4.424748e-46 |
| MsG0380015779.01 | MsG0580026771.01 | 0.841126 | 5.740233e-58 | 8.352421e-55 |
| MsG0380016227.01 | MsG0580026771.01 | 0.800799 | 1.216525e-48 | 5.716453e-46 |
| MsG0380016971.01 | MsG0580026771.01 | 0.814405 | 1.566860e-51 | 1.050460e-48 |
| MsG0380017403.01 | MsG0580026771.01 | 0.812956 | 3.265056e-51 | 2.104396e-48 |
| MsG0480018126.01 | MsG0580026771.01 | 0.860637 | 1.798130e-63 | 4.948680e-60 |
| MsG0580026771.01 | MsG0580027169.01 | 0.859176 | 4.958344e-63 | 1.297742e-59 |
| MsG0580026771.01 | MsG0580027345.01 | 0.825545 | 4.421539e-54 | 4.042356e-51 |
| MsG0580026771.01 | MsG0580029189.01 | 0.825341 | 4.941130e-54 | 4.491439e-51 |
| MsG0580026771.01 | MsG0580029661.01 | 0.810937 | 8.992712e-51 | 5.493753e-48 |
| MsG0580026771.01 | MsG0580029762.01 | 0.801475 | 8.849355e-49 | 4.230091e-46 |
| MsG0580026771.01 | MsG0580030235.01 | 0.824986 | 5.995712e-54 | 5.395376e-51 |
| MsG0580026771.01 | MsG0680031651.01 | 0.845262 | 4.530773e-59 | 7.508382e-56 |
| MsG0580026771.01 | MsG0780038495.01 | 0.830058 | 3.637397e-55 | 3.790148e-52 |
| MsG0580026771.01 | MsG0780038645.01 | 0.817609 | 3.018328e-52 | 2.208389e-49 |
| MsG0580026771.01 | MsG0780039137.01 | 0.808962 | 2.393210e-50 | 1.387331e-47 |
| MsG0580026771.01 | MsG0780040360.01 | 0.809221 | 2.106147e-50 | 1.229480e-47 |
| MsG0580026771.01 | MsG0780040861.01 | 0.840693 | 7.457856e-58 | 1.070773e-54 |
| MsG0580026771.01 | MsG0780041754.01 | 0.811641 | 6.325632e-51 | 3.936345e-48 |
| MsG0580026771.01 | MsG0880041883.01 | 0.837183 | 6.041244e-57 | 7.786041e-54 |
| MsG0580026771.01 | MsG0880042349.01 | 0.802914 | 4.475235e-49 | 2.218950e-46 |
| MsG0580026771.01 | MsG0880042543.01 | 0.827429 | 1.572425e-54 | 1.517663e-51 |
| MsG0580026771.01 | MsG0880046113.01 | 0.804148 | 2.483040e-49 | 1.270756e-46 |
| MsG0580026771.01 | MsG0880046669.01 | 0.813705 | 2.235637e-51 | 1.470611e-48 |
| MsG0580026771.01 | MsG0880046933.01 | 0.801130 | 1.040963e-48 | 4.933021e-46 |
| MsG0580026771.01 | MsG0880047012.01 | 0.803262 | 3.791165e-49 | 1.896513e-46 |
| MsG0580026771.01 | MsG0880047590.01 | 0.803258 | 3.799140e-49 | 1.900307e-46 |
| MsG0280006544.01 | MsG0580026771.01 | 0.825476 | 4.590229e-54 | 4.188289e-51 |
| MsG0280006595.01 | MsG0580026771.01 | 0.813662 | 2.284697e-51 | 1.501126e-48 |
| MsG0280007071.01 | MsG0580026771.01 | 0.820455 | 6.799339e-53 | 5.382681e-50 |
| MsG0280007088.01 | MsG0580026771.01 | 0.814621 | 1.403586e-51 | 9.464505e-49 |
| MsG0280007089.01 | MsG0580026771.01 | 0.826941 | 2.057227e-54 | 1.957475e-51 |
| MsG0280007607.01 | MsG0580026771.01 | 0.821654 | 3.599951e-53 | 2.946529e-50 |
| MsG0280007609.01 | MsG0580026771.01 | 0.843709 | 1.185672e-58 | 1.870951e-55 |
| MsG0280008327.01 | MsG0580026771.01 | 0.801490 | 8.786465e-49 | 4.201638e-46 |
| MsG0280008885.01 | MsG0580026771.01 | 0.817752 | 2.801426e-52 | 2.057892e-49 |
| MsG0280008971.01 | MsG0580026771.01 | 0.829517 | 4.924562e-55 | 5.051706e-52 |
| MsG0280009140.01 | MsG0580026771.01 | 0.816566 | 5.177809e-52 | 3.681714e-49 |
| MsG0280009789.01 | MsG0580026771.01 | 0.804260 | 2.353146e-49 | 1.207694e-46 |
| MsG0280010389.01 | MsG0580026771.01 | 0.839093 | 1.947121e-57 | 2.660609e-54 |
| MsG0280010447.01 | MsG0580026771.01 | 0.805988 | 1.023298e-49 | 5.490964e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026771.01.T01 | MTR_4g105330 | 96.739 | 184 | 6 | 0 | 1 | 184 | 119 | 302 | 2.36e-131 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026771.01.T01 | AT3G48210 | 42.473 | 186 | 98 | 4 | 2 | 184 | 133 | 312 | 8.65e-38 | 132 |
Find 37 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCCATCTCTTGGTATAAC+AGG | 0.291680 | 5:-44336843 | MsG0580026771.01.T01:CDS |
| CATCTGTCTTGTTTAATTCA+TGG | 0.302544 | 5:+44336484 | None:intergenic |
| GTAAAAGAGTACTCCTCATT+TGG | 0.343740 | 5:+44336665 | None:intergenic |
| GAAGCAGAAACAGGAGATAA+AGG | 0.378138 | 5:+44335791 | None:intergenic |
| TCGCCAGTCTCCACGTTTGA+AGG | 0.380013 | 5:-44335762 | MsG0580026771.01.T01:CDS |
| TCTTGGTATAACAGGGTACT+TGG | 0.397967 | 5:-44336835 | MsG0580026771.01.T01:CDS |
| CGAACAGATGAAGCAGAAAC+AGG | 0.430200 | 5:+44335782 | None:intergenic |
| AGTTCGCAGAAGGAAAAGTT+TGG | 0.432380 | 5:-44335816 | MsG0580026771.01.T01:CDS |
| TCATCCGCTCCTGGCACATC+TGG | 0.434205 | 5:-44335917 | MsG0580026771.01.T01:CDS |
| AGGAGCGGATGAAGATATAA+AGG | 0.452608 | 5:+44335928 | None:intergenic |
| TTTATATCTTCATCCGCTCC+TGG | 0.466324 | 5:-44335926 | MsG0580026771.01.T01:CDS |
| CGTTGTGAACCTTCCTTCGA+TGG | 0.489675 | 5:-44336522 | MsG0580026771.01.T01:CDS |
| CTTCGATGGTATTGAAGAGC+TGG | 0.509662 | 5:-44336508 | MsG0580026771.01.T01:CDS |
| ATACCTTCAAACGTGGAGAC+TGG | 0.510056 | 5:+44335759 | None:intergenic |
| TTAAGTTTGTCAGAGTAATG+AGG | 0.518116 | 5:-44336455 | MsG0580026771.01.T01:CDS |
| GAGCATGAAGTGGAACGCTC+TGG | 0.532714 | 5:-44335866 | MsG0580026771.01.T01:CDS |
| ATCTGAAGGGAGGTTGAATG+AGG | 0.533325 | 5:-44336893 | MsG0580026771.01.T01:CDS |
| GATATAAAGGCAGATTCTCC+AGG | 0.534729 | 5:+44335941 | None:intergenic |
| GAAGCTTTGGCAGCATCTGA+AGG | 0.537582 | 5:-44336907 | None:intergenic |
| AAACACAGGAGGCCATCTCT+TGG | 0.552693 | 5:-44336852 | MsG0580026771.01.T01:CDS |
| TAGAAGTGATTCTACAGCCA+TGG | 0.573031 | 5:-44335894 | MsG0580026771.01.T01:CDS |
| AAGCTTTGGCAGCATCTGAA+GGG | 0.586020 | 5:-44336906 | None:intergenic |
| TCACTTCTACCAGATGTGCC+AGG | 0.586982 | 5:+44335908 | None:intergenic |
| TTTCAAGAAGCATTGGCACA+AGG | 0.601367 | 5:-44336426 | MsG0580026771.01.T01:intron |
| TACCCTGTTATACCAAGAGA+TGG | 0.606063 | 5:+44336840 | None:intergenic |
| CAGCTCTTCAATACCATCGA+AGG | 0.622116 | 5:+44336509 | None:intergenic |
| CTTTGGCAGCATCTGAAGGG+AGG | 0.622951 | 5:-44336903 | MsG0580026771.01.T01:CDS |
| AAATTTGAAGAATCCAAATG+AGG | 0.623545 | 5:-44336678 | MsG0580026771.01.T01:CDS |
| CATGAATTAAACAAGACAGA+TGG | 0.623903 | 5:-44336483 | MsG0580026771.01.T01:CDS |
| TCTTCAATACCATCGAAGGA+AGG | 0.637490 | 5:+44336513 | None:intergenic |
| CATGGAAAATGAGCATGAAG+TGG | 0.637509 | 5:-44335876 | MsG0580026771.01.T01:CDS |
| GGCCATCTCTTGGTATAACA+GGG | 0.647513 | 5:-44336842 | MsG0580026771.01.T01:CDS |
| TCTGAAGGGAGGTTGAATGA+GGG | 0.651760 | 5:-44336892 | MsG0580026771.01.T01:CDS |
| TCTACCAGATGTGCCAGGAG+CGG | 0.654573 | 5:+44335913 | None:intergenic |
| TGAACATACAGATGAAACAC+AGG | 0.659863 | 5:-44336866 | MsG0580026771.01.T01:CDS |
| GTAATTCATACCTTCAAACG+TGG | 0.717846 | 5:+44335752 | None:intergenic |
| ACATACAGATGAAACACAGG+AGG | 0.726406 | 5:-44336863 | MsG0580026771.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTATAAGTATTTTTATCA+TGG | + | Chr5:44336025-44336044 | None:intergenic | 15.0% |
| !!! | TCATTATAATATGAAGTATT+TGG | + | Chr5:44336419-44336438 | None:intergenic | 15.0% |
| !!! | TTATCATTTTATAATTCAAG+CGG | + | Chr5:44336335-44336354 | None:intergenic | 15.0% |
| !! | CATAAGCAAAAAAAAGTTAA+TGG | + | Chr5:44335880-44335899 | None:intergenic | 20.0% |
| !! | GTATATAAAATCATAAATGC+AGG | + | Chr5:44336056-44336075 | None:intergenic | 20.0% |
| !! | TTAATAGAATCACTTCATAT+TGG | + | Chr5:44336379-44336398 | None:intergenic | 20.0% |
| !!! | CATTAACTTTTTTTTGCTTA+TGG | - | Chr5:44335878-44335897 | MsG0580026771.01.T01:CDS | 20.0% |
| ! | AAATTTGAAGAATCCAAATG+AGG | - | Chr5:44335980-44335999 | MsG0580026771.01.T01:intron | 25.0% |
| ! | ATTATTGAACTGTTCAAACA+TGG | - | Chr5:44336496-44336515 | MsG0580026771.01.T01:CDS | 25.0% |
| ! | GATTTAATCGCTATTAAACA+GGG | - | Chr5:44336670-44336689 | MsG0580026771.01.T01:CDS | 25.0% |
| ! | GTTCAATAATACATATGAAC+TGG | + | Chr5:44336486-44336505 | None:intergenic | 25.0% |
| ! | TGATTTAATCGCTATTAAAC+AGG | - | Chr5:44336669-44336688 | MsG0580026771.01.T01:CDS | 25.0% |
| ! | TTGTTGGAAATTGAATGAAA+GGG | - | Chr5:44336625-44336644 | MsG0580026771.01.T01:intron | 25.0% |
| !! | GAAAAAATTTCAAGAAGCAT+TGG | - | Chr5:44336225-44336244 | MsG0580026771.01.T01:intron | 25.0% |
| AAAGATAAAAGAGATGGTGT+AGG | + | Chr5:44336108-44336127 | None:intergenic | 30.0% | |
| ACACTGAAAGATAAAAGAGA+TGG | + | Chr5:44336114-44336133 | None:intergenic | 30.0% | |
| CATGAATTAAACAAGACAGA+TGG | - | Chr5:44336175-44336194 | MsG0580026771.01.T01:intron | 30.0% | |
| CTTATTAGTTATGCTCTTCA+GGG | - | Chr5:44335934-44335953 | MsG0580026771.01.T01:CDS | 30.0% | |
| CTTGTTGGAAATTGAATGAA+AGG | - | Chr5:44336624-44336643 | MsG0580026771.01.T01:intron | 30.0% | |
| TAAATAGTATCTTCGCTTGT+TGG | - | Chr5:44336609-44336628 | MsG0580026771.01.T01:intron | 30.0% | |
| TTAAGTTTGTCAGAGTAATG+AGG | - | Chr5:44336203-44336222 | MsG0580026771.01.T01:intron | 30.0% | |
| TTATTAGTTATGCTCTTCAG+GGG | - | Chr5:44335935-44335954 | MsG0580026771.01.T01:CDS | 30.0% | |
| !! | CATCTGTCTTGTTTAATTCA+TGG | + | Chr5:44336177-44336196 | None:intergenic | 30.0% |
| !! | GTTTTAACAACAGTTAATCC+TGG | - | Chr5:44336699-44336718 | MsG0580026771.01.T01:CDS | 30.0% |
| !! | TACTTGGTTTTCATGTCAAA+GGG | - | Chr5:44335839-44335858 | MsG0580026771.01.T01:CDS | 30.0% |
| AGAAAAAACAAGTTCGCAGA+AGG | - | Chr5:44336832-44336851 | MsG0580026771.01.T01:CDS | 35.0% | |
| ATATTGGAGCTCTGCATATT+TGG | + | Chr5:44336363-44336382 | None:intergenic | 35.0% | |
| CCTTATTAGTTATGCTCTTC+AGG | - | Chr5:44335933-44335952 | MsG0580026771.01.T01:CDS | 35.0% | |
| TGAACATACAGATGAAACAC+AGG | - | Chr5:44335792-44335811 | MsG0580026771.01.T01:CDS | 35.0% | |
| ! | CCTGAAGAGCATAACTAATA+AGG | + | Chr5:44335936-44335955 | None:intergenic | 35.0% |
| !! | ACTTGGTTTTCATGTCAAAG+GGG | - | Chr5:44335840-44335859 | MsG0580026771.01.T01:CDS | 35.0% |
| !! | GTAAAAGAGTACTCCTCATT+TGG | + | Chr5:44335996-44336015 | None:intergenic | 35.0% |
| !! | GTACTTGGTTTTCATGTCAA+AGG | - | Chr5:44335838-44335857 | MsG0580026771.01.T01:CDS | 35.0% |
| ACATACAGATGAAACACAGG+AGG | - | Chr5:44335795-44335814 | MsG0580026771.01.T01:CDS | 40.0% | |
| AGGAGCGGATGAAGATATAA+AGG | + | Chr5:44336733-44336752 | None:intergenic | 40.0% | |
| AGTTCGCAGAAGGAAAAGTT+TGG | - | Chr5:44336842-44336861 | MsG0580026771.01.T01:CDS | 40.0% | |
| ATGAGTGTATGCATGTGATG+TGG | - | Chr5:44336281-44336300 | MsG0580026771.01.T01:intron | 40.0% | |
| CATGGAAAATGAGCATGAAG+TGG | - | Chr5:44336782-44336801 | MsG0580026771.01.T01:intron | 40.0% | |
| GAAGCAGAAACAGGAGATAA+AGG | + | Chr5:44336870-44336889 | None:intergenic | 40.0% | |
| GATATAAAGGCAGATTCTCC+AGG | + | Chr5:44336720-44336739 | None:intergenic | 40.0% | |
| TACCCTGTTATACCAAGAGA+TGG | + | Chr5:44335821-44335840 | None:intergenic | 40.0% | |
| TAGAAGTGATTCTACAGCCA+TGG | - | Chr5:44336764-44336783 | MsG0580026771.01.T01:intron | 40.0% | |
| TCTTCAATACCATCGAAGGA+AGG | + | Chr5:44336148-44336167 | None:intergenic | 40.0% | |
| TGAGTGTATGCATGTGATGT+GGG | - | Chr5:44336282-44336301 | MsG0580026771.01.T01:intron | 40.0% | |
| TTTATATCTTCATCCGCTCC+TGG | - | Chr5:44336732-44336751 | MsG0580026771.01.T01:intron | 40.0% | |
| ! | CACTTCATGCTCATTTTCCA+TGG | + | Chr5:44336784-44336803 | None:intergenic | 40.0% |
| ! | TCTTGGTATAACAGGGTACT+TGG | - | Chr5:44335823-44335842 | MsG0580026771.01.T01:CDS | 40.0% |
| !! | CTTGGTTTTCATGTCAAAGG+GGG | - | Chr5:44335841-44335860 | MsG0580026771.01.T01:CDS | 40.0% |
| !! | TTTCAAGAAGCATTGGCACA+AGG | - | Chr5:44336232-44336251 | MsG0580026771.01.T01:intron | 40.0% |
| AGGCCATCTCTTGGTATAAC+AGG | - | Chr5:44335815-44335834 | MsG0580026771.01.T01:CDS | 45.0% | |
| ATACCTTCAAACGTGGAGAC+TGG | + | Chr5:44336902-44336921 | None:intergenic | 45.0% | |
| ATCTGAAGGGAGGTTGAATG+AGG | - | Chr5:44335765-44335784 | MsG0580026771.01.T01:CDS | 45.0% | |
| CAGCTCTTCAATACCATCGA+AGG | + | Chr5:44336152-44336171 | None:intergenic | 45.0% | |
| CGAACAGATGAAGCAGAAAC+AGG | + | Chr5:44336879-44336898 | None:intergenic | 45.0% | |
| GGCCATCTCTTGGTATAACA+GGG | - | Chr5:44335816-44335835 | MsG0580026771.01.T01:CDS | 45.0% | |
| TCTGAAGGGAGGTTGAATGA+GGG | - | Chr5:44335766-44335785 | MsG0580026771.01.T01:CDS | 45.0% | |
| ! | CTTCGATGGTATTGAAGAGC+TGG | - | Chr5:44336150-44336169 | MsG0580026771.01.T01:intron | 45.0% |
| AAACACAGGAGGCCATCTCT+TGG | - | Chr5:44335806-44335825 | MsG0580026771.01.T01:CDS | 50.0% | |
| CGTTGTGAACCTTCCTTCGA+TGG | - | Chr5:44336136-44336155 | MsG0580026771.01.T01:intron | 50.0% | |
| GATGTGGGAGCTCTGCATAT+TGG | - | Chr5:44336297-44336316 | MsG0580026771.01.T01:intron | 50.0% | |
| TCACTTCTACCAGATGTGCC+AGG | + | Chr5:44336753-44336772 | None:intergenic | 50.0% | |
| TTTCATGTCAAAGGGGGACG+TGG | - | Chr5:44335847-44335866 | MsG0580026771.01.T01:CDS | 50.0% | |
| GAGCATGAAGTGGAACGCTC+TGG | - | Chr5:44336792-44336811 | MsG0580026771.01.T01:intron | 55.0% | |
| TCGCCAGTCTCCACGTTTGA+AGG | - | Chr5:44336896-44336915 | MsG0580026771.01.T01:CDS | 55.0% | |
| TCTACCAGATGTGCCAGGAG+CGG | + | Chr5:44336748-44336767 | None:intergenic | 55.0% | |
| TCATCCGCTCCTGGCACATC+TGG | - | Chr5:44336741-44336760 | MsG0580026771.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 44335757 | 44336923 | 44335757 | ID=MsG0580026771.01;Name=MsG0580026771.01 |
| Chr5 | mRNA | 44335757 | 44336923 | 44335757 | ID=MsG0580026771.01.T01;Parent=MsG0580026771.01;Name=MsG0580026771.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.5|1|1|1|4|0|185 |
| Chr5 | exon | 44336812 | 44336923 | 44336812 | ID=MsG0580026771.01.T01:exon:18313;Parent=MsG0580026771.01.T01 |
| Chr5 | exon | 44336636 | 44336725 | 44336636 | ID=MsG0580026771.01.T01:exon:18312;Parent=MsG0580026771.01.T01 |
| Chr5 | exon | 44336427 | 44336549 | 44336427 | ID=MsG0580026771.01.T01:exon:18311;Parent=MsG0580026771.01.T01 |
| Chr5 | exon | 44335757 | 44335989 | 44335757 | ID=MsG0580026771.01.T01:exon:18310;Parent=MsG0580026771.01.T01 |
| Chr5 | CDS | 44336812 | 44336923 | 44336812 | ID=MsG0580026771.01.T01:cds;Parent=MsG0580026771.01.T01 |
| Chr5 | CDS | 44336636 | 44336725 | 44336636 | ID=MsG0580026771.01.T01:cds;Parent=MsG0580026771.01.T01 |
| Chr5 | CDS | 44336427 | 44336549 | 44336427 | ID=MsG0580026771.01.T01:cds;Parent=MsG0580026771.01.T01 |
| Chr5 | CDS | 44335757 | 44335989 | 44335757 | ID=MsG0580026771.01.T01:cds;Parent=MsG0580026771.01.T01 |
| Gene Sequence |
| Protein sequence |
