AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039821.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039821.01.T01 MTR_7g079900 98.598 214 3 0 1 214 1 214 8.31e-154 425
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039821.01.T01 AT4G12800 78.899 218 40 2 2 214 3 219 3.61e-102 295
MsG0780039821.01.T01 AT4G12800 78.899 218 40 2 2 214 65 281 5.47e-102 296

Find 89 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTCCTTCTATATGTTT+TGG 0.240111 7:-69434187 MsG0780039821.01.T01:CDS
GCAGGCTCTCTTGCAGCTGC+TGG 0.244287 7:-69434402 MsG0780039821.01.T01:CDS
AGCATTTGCCTTACAATCTA+TGG 0.244835 7:-69434363 MsG0780039821.01.T01:CDS
CTGCAGTGAACCCACTTCTT+AGG 0.251716 7:-69434515 MsG0780039821.01.T01:CDS
CAGGCTCTCTTGCAGCTGCT+GGG 0.294839 7:-69434401 MsG0780039821.01.T01:CDS
GAGGAATTTCTGGTGTTACT+TGG 0.304451 7:-69434212 MsG0780039821.01.T01:CDS
TTTGTTTACTTAACAAAGTA+TGG 0.310191 7:+69434159 None:intergenic
GCATATTCGGTGTTCCTTAG+AGG 0.320651 7:+69434432 None:intergenic
TCGTTAAAGCCGGGCCTCTA+AGG 0.342506 7:-69434446 MsG0780039821.01.T01:CDS
TGCTCCATCTTTGACCTTAA+CGG 0.346044 7:-69434307 MsG0780039821.01.T01:CDS
GCCTGCTGATCCGGCATATT+CGG 0.350236 7:+69434419 None:intergenic
GCAATTTAACTTCACTGTTA+AGG 0.363545 7:-69435259 MsG0780039821.01.T01:CDS
TGCAGTGAACCCACTTCTTA+GGG 0.397637 7:-69434514 MsG0780039821.01.T01:CDS
TGCAAGAGAGCCTGCTGATC+CGG 0.399513 7:+69434410 None:intergenic
GCTCCATCTTTGACCTTAAC+GGG 0.401102 7:-69434306 MsG0780039821.01.T01:CDS
GCCTTCTAGAAGGCAATTGA+TGG 0.409064 7:+69435280 None:intergenic
AAGTTAAATTGCCTTCTAGA+AGG 0.412684 7:+69435270 None:intergenic
ATGAAACTCCATAGATTGTA+AGG 0.413757 7:+69434355 None:intergenic
GTCCAGCTTCACTAGACCTT+TGG 0.414369 7:-69435337 MsG0780039821.01.T01:CDS
GTTTCAAGGCTTCCAATGAA+TGG 0.415748 7:+69434597 None:intergenic
ACAAGTGGGCTTGATGTAAC+TGG 0.422772 7:+69434573 None:intergenic
GAAGATCCAAAACATATAGA+AGG 0.425165 7:+69434181 None:intergenic
GTCACACCTAGGGGACTTTG+TGG 0.427623 7:-69435315 MsG0780039821.01.T01:CDS
TCCATCAATTGCCTTCTAGA+AGG 0.440411 7:-69435281 MsG0780039821.01.T01:CDS
ACCGAATATGCCGGATCAGC+AGG 0.445265 7:-69434420 MsG0780039821.01.T01:CDS
GAGGCCCGGCTTTAACGAAC+GGG 0.446312 7:+69434451 None:intergenic
TTCACTGCAGTTCTGTAGCC+TGG 0.450335 7:+69434528 None:intergenic
CTGCTTCTTACGGCCCGTTA+AGG 0.452578 7:+69434293 None:intergenic
AGGAATTTCTGGTGTTACTT+GGG 0.453497 7:-69434211 MsG0780039821.01.T01:CDS
ATCAACGGTGACCCATTCAT+TGG 0.455192 7:-69434609 MsG0780039821.01.T01:CDS
TCAGCTGTTTGAAGCGGATC+GGG 0.455381 7:+69434270 None:intergenic
CATGGCAGCTGCTTCTCCTA+TGG 0.458111 7:-69435373 MsG0780039821.01.T01:CDS
GCGGATCGGGCTGCTTCTTA+CGG 0.463706 7:+69434283 None:intergenic
CTGCAGTTCTGTAGCCTGGT+AGG 0.467767 7:+69434532 None:intergenic
CGTTGATTGGTTGAATCACT+TGG 0.469160 7:+69434625 None:intergenic
TTCGGTGTTCCTTAGAGGCC+CGG 0.471580 7:+69434437 None:intergenic
TTTCAAGGCTTCCAATGAAT+GGG 0.476089 7:+69434598 None:intergenic
ACACACACTGGTTGAATTGA+GGG 0.479464 7:+69435443 None:intergenic
CACTGGTTGAATTGAGGGAC+CGG 0.488380 7:+69435448 None:intergenic
TACACACACTGGTTGAATTG+AGG 0.489622 7:+69435442 None:intergenic
ATGAATGGGTCACCGTTGAT+TGG 0.494570 7:+69434612 None:intergenic
GGAGTTTCATCATTCAATGA+AGG 0.498940 7:-69434342 MsG0780039821.01.T01:CDS
GTAGGCCCGTTCGTTAAAGC+CGG 0.500427 7:-69434456 MsG0780039821.01.T01:CDS
CATCAAGCCCACTTGTTGCA+TGG 0.506359 7:-69434566 MsG0780039821.01.T01:CDS
TCTCTGTGCTGCTCCACTTG+TGG 0.508713 7:-69435414 MsG0780039821.01.T01:five_prime_UTR
GACCAAAGGTCTAGTGAAGC+TGG 0.510695 7:+69435335 None:intergenic
AGATTGTAAGGCAAATGCTT+AGG 0.517259 7:+69434367 None:intergenic
TAAGGCAATCCAATCTGAAA+AGG 0.518673 7:-69435241 MsG0780039821.01.T01:intron
TAGTGAAGCTGGACTTGAGT+TGG 0.519806 7:+69435346 None:intergenic
TTGATGTAACTGGAGTTTCA+AGG 0.522174 7:+69434583 None:intergenic
ATCAGCTGTTTGAAGCGGAT+CGG 0.522546 7:+69434269 None:intergenic
TAGAAGGCAATTGATGGAGT+GGG 0.523972 7:+69435286 None:intergenic
TAGACCTTTGGTCACACCTA+GGG 0.524311 7:-69435325 MsG0780039821.01.T01:CDS
GACTTGAGTTGGCTTGCCAT+AGG 0.524629 7:+69435357 None:intergenic
GTTGGTCCAAATTCACTGGT+GGG 0.525672 7:-69434245 MsG0780039821.01.T01:CDS
CTTCTTAGGGGAATTGAAGT+CGG 0.527910 7:-69434501 MsG0780039821.01.T01:CDS
CGGCCCGTTAAGGTCAAAGA+TGG 0.530150 7:+69434303 None:intergenic
TAGGCCCGTTCGTTAAAGCC+GGG 0.536476 7:-69434455 MsG0780039821.01.T01:CDS
CGCTTCAAACAGCTGATGGT+TGG 0.542041 7:-69434263 MsG0780039821.01.T01:CDS
TATGTGTGTTAATGAGATGA+TGG 0.548175 7:-69434109 MsG0780039821.01.T01:three_prime_UTR
CTAAGGAACACCGAATATGC+CGG 0.551083 7:-69434429 MsG0780039821.01.T01:CDS
AGAGGCCCGGCTTTAACGAA+CGG 0.558183 7:+69434450 None:intergenic
GGTTGGTCCAAATTCACTGG+TGG 0.559336 7:-69434246 MsG0780039821.01.T01:CDS
GATGGTTGGTCCAAATTCAC+TGG 0.562571 7:-69434249 MsG0780039821.01.T01:CDS
AGTTCTGTAGCCTGGTAGGT+TGG 0.564607 7:+69434536 None:intergenic
GATCCGCTTCAAACAGCTGA+TGG 0.567696 7:-69434267 MsG0780039821.01.T01:CDS
ACTTCAATTCCCCTAAGAAG+TGG 0.571599 7:+69434504 None:intergenic
GGCCTACGAGGAAGAATCCG+TGG 0.584423 7:+69434472 None:intergenic
CTTCAATTCCCCTAAGAAGT+GGG 0.585394 7:+69434505 None:intergenic
ATTGAAGTCGGCTTAGCCCA+CGG 0.585782 7:-69434489 MsG0780039821.01.T01:CDS
TGTAGCCTGGTAGGTTGGAG+AGG 0.590006 7:+69434541 None:intergenic
CAGAGAGTTGTTACACACAC+TGG 0.590670 7:+69435431 None:intergenic
GAAGAGCCACAAAGTCCCCT+AGG 0.592421 7:+69435309 None:intergenic
AATCAACAAAACTTAAGTCA+TGG 0.592569 7:-69435391 MsG0780039821.01.T01:exon
CTAGAAGGCAATTGATGGAG+TGG 0.595003 7:+69435285 None:intergenic
CTAGACCTTTGGTCACACCT+AGG 0.596879 7:-69435326 MsG0780039821.01.T01:CDS
TGGTACCTCTCCAACCTACC+AGG 0.596886 7:-69434546 MsG0780039821.01.T01:CDS
GAGAGGTACCATGCAACAAG+TGG 0.599829 7:+69434558 None:intergenic
CAACCATCAGCTGTTTGAAG+CGG 0.634633 7:+69434264 None:intergenic
GCCTACGAGGAAGAATCCGT+GGG 0.642971 7:+69434473 None:intergenic
CTTTAACGAACGGGCCTACG+AGG 0.656397 7:+69434460 None:intergenic
AGAAGGCAATTGATGGAGTG+GGG 0.661086 7:+69435287 None:intergenic
AGACCTTTGGTCACACCTAG+GGG 0.664459 7:-69435324 MsG0780039821.01.T01:CDS
GCAGTGAACCCACTTCTTAG+GGG 0.670055 7:-69434513 MsG0780039821.01.T01:CDS
CAAGTGATTCAACCAATCAA+CGG 0.677130 7:-69434624 MsG0780039821.01.T01:CDS
AGAGGTACCATGCAACAAGT+GGG 0.679084 7:+69434559 None:intergenic
AGTCCCCTAGGTGTGACCAA+AGG 0.679971 7:+69435321 None:intergenic
GCCCACGGATTCTTCCTCGT+AGG 0.683737 7:-69434474 MsG0780039821.01.T01:CDS
GTTGAATTGAGGGACCGGAG+TGG 0.736993 7:+69435453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATAACTAACTAAATAA+AGG + Chr7:69434413-69434432 None:intergenic 15.0%
!! AACATAACTAACTAAATAAA+GGG + Chr7:69434412-69434431 None:intergenic 15.0%
!! ATTGAGTCATTTATTTCAAT+TGG - Chr7:69434821-69434840 MsG0780039821.01.T01:intron 20.0%
!! GTTCATTTCTATAATTGAAT+AGG - Chr7:69434733-69434752 MsG0780039821.01.T01:intron 20.0%
!! TATATATATGTTCATTGCTT+AGG - Chr7:69434558-69434577 MsG0780039821.01.T01:CDS 20.0%
!! TTTGTTTACTTAACAAAGTA+TGG + Chr7:69435339-69435358 None:intergenic 20.0%
!!! AACATGTTCATTATTTTAAG+TGG - Chr7:69434517-69434536 MsG0780039821.01.T01:CDS 20.0%
!!! TTGCTAATGTATTTTAACTA+TGG + Chr7:69434364-69434383 None:intergenic 20.0%
! AATCAACAAAACTTAAGTCA+TGG - Chr7:69434104-69434123 MsG0780039821.01.T01:three_prime_UTR 25.0%
! CCTATAACAGTAATGAAAAA+CGG - Chr7:69434686-69434705 MsG0780039821.01.T01:intron 25.0%
! GAAATAAATGACTCAATTTC+AGG + Chr7:69434818-69434837 None:intergenic 25.0%
!! GCTTTTGTTAAAGTTGTTAT+AGG + Chr7:69434790-69434809 None:intergenic 25.0%
!! TAAACAAAGAGAGTATACAT+AGG + Chr7:69434300-69434319 None:intergenic 25.0%
!! TTACTTCCTTCTATATGTTT+TGG - Chr7:69435308-69435327 MsG0780039821.01.T01:CDS 25.0%
AAGTTAAATTGCCTTCTAGA+AGG + Chr7:69434228-69434247 None:intergenic 30.0%
ATGAAACTCCATAGATTGTA+AGG + Chr7:69435143-69435162 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG + Chr7:69434455-69434474 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG + Chr7:69434347-69434366 None:intergenic 30.0%
GAAGATCCAAAACATATAGA+AGG + Chr7:69435317-69435336 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG - Chr7:69434562-69434581 MsG0780039821.01.T01:CDS 30.0%
TATGTGTGTTAATGAGATGA+TGG - Chr7:69435386-69435405 MsG0780039821.01.T01:exon 30.0%
TGTTCATCACATTATTCACT+TGG - Chr7:69434661-69434680 MsG0780039821.01.T01:intron 30.0%
! AGAGAGTATACATAGGTAAT+AGG + Chr7:69434293-69434312 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG - Chr7:69434236-69434255 MsG0780039821.01.T01:CDS 30.0%
!! AGATAAAGTGGACTAGATTA+TGG + Chr7:69434335-69434354 None:intergenic 30.0%
!! CCGTTTTTCATTACTGTTAT+AGG + Chr7:69434689-69434708 None:intergenic 30.0%
!! TTTTTCTTTGGAGGAATTTC+TGG - Chr7:69435273-69435292 MsG0780039821.01.T01:CDS 30.0%
AGATTGTAAGGCAAATGCTT+AGG + Chr7:69435131-69435150 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG - Chr7:69435132-69435151 MsG0780039821.01.T01:intron 35.0%
CAAGTGATTCAACCAATCAA+CGG - Chr7:69434871-69434890 MsG0780039821.01.T01:intron 35.0%
GAGTATACATAGGTAATAGG+AGG + Chr7:69434290-69434309 None:intergenic 35.0%
GGAGTTTCATCATTCAATGA+AGG - Chr7:69435153-69435172 MsG0780039821.01.T01:intron 35.0%
TAAGGCAATCCAATCTGAAA+AGG - Chr7:69434254-69434273 MsG0780039821.01.T01:CDS 35.0%
TTGATGTAACTGGAGTTTCA+AGG + Chr7:69434915-69434934 None:intergenic 35.0%
TTTCAAGGCTTCCAATGAAT+GGG + Chr7:69434900-69434919 None:intergenic 35.0%
! AGTAGCATACCTTTTCAGAT+TGG + Chr7:69434266-69434285 None:intergenic 35.0%
! TGGTAATTTTGCTGCAACAA+TGG + Chr7:69434853-69434872 None:intergenic 35.0%
!! AGGAATTTCTGGTGTTACTT+GGG - Chr7:69435284-69435303 MsG0780039821.01.T01:CDS 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG - Chr7:69434576-69434595 MsG0780039821.01.T01:CDS 35.0%
!!! AGTTTTGTTGATTCCACAAG+TGG + Chr7:69434097-69434116 None:intergenic 35.0%
ACTTCAATTCCCCTAAGAAG+TGG + Chr7:69434994-69435013 None:intergenic 40.0%
CTTCAATTCCCCTAAGAAGT+GGG + Chr7:69434993-69435012 None:intergenic 40.0%
CTTCTTAGGGGAATTGAAGT+CGG - Chr7:69434994-69435013 MsG0780039821.01.T01:intron 40.0%
GAAAAACCCACCAGTGAATT+TGG + Chr7:69435259-69435278 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG + Chr7:69434901-69434920 None:intergenic 40.0%
TAGAAGGCAATTGATGGAGT+GGG + Chr7:69434212-69434231 None:intergenic 40.0%
TCCATCAATTGCCTTCTAGA+AGG - Chr7:69434214-69434233 MsG0780039821.01.T01:CDS 40.0%
TGCTCCATCTTTGACCTTAA+CGG - Chr7:69435188-69435207 MsG0780039821.01.T01:intron 40.0%
! ACACACACTGGTTGAATTGA+GGG + Chr7:69434055-69434074 None:intergenic 40.0%
! CGTTGATTGGTTGAATCACT+TGG + Chr7:69434873-69434892 None:intergenic 40.0%
! TACACACACTGGTTGAATTG+AGG + Chr7:69434056-69434075 None:intergenic 40.0%
!! GAGGAATTTCTGGTGTTACT+TGG - Chr7:69435283-69435302 MsG0780039821.01.T01:CDS 40.0%
!!! TTCACTGGTGGGTTTTTCTT+TGG - Chr7:69435261-69435280 MsG0780039821.01.T01:CDS 40.0%
AGAAGGCAATTGATGGAGTG+GGG + Chr7:69434211-69434230 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG - Chr7:69434886-69434905 MsG0780039821.01.T01:intron 45.0%
ATGAATGGGTCACCGTTGAT+TGG + Chr7:69434886-69434905 None:intergenic 45.0%
CAACCATCAGCTGTTTGAAG+CGG + Chr7:69435234-69435253 None:intergenic 45.0%
CAGAGAGTTGTTACACACAC+TGG + Chr7:69434067-69434086 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG - Chr7:69435066-69435085 MsG0780039821.01.T01:intron 45.0%
CTAGAAGGCAATTGATGGAG+TGG + Chr7:69434213-69434232 None:intergenic 45.0%
GCTCCATCTTTGACCTTAAC+GGG - Chr7:69435189-69435208 MsG0780039821.01.T01:intron 45.0%
GTTGGTCCAAATTCACTGGT+GGG - Chr7:69435250-69435269 MsG0780039821.01.T01:CDS 45.0%
TAGACCTTTGGTCACACCTA+GGG - Chr7:69434170-69434189 MsG0780039821.01.T01:CDS 45.0%
TAGTGAAGCTGGACTTGAGT+TGG + Chr7:69434152-69434171 None:intergenic 45.0%
TGCAGTGAACCCACTTCTTA+GGG - Chr7:69434981-69435000 MsG0780039821.01.T01:intron 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG + Chr7:69434925-69434944 None:intergenic 45.0%
! ATCAGCTGTTTGAAGCGGAT+CGG + Chr7:69435229-69435248 None:intergenic 45.0%
! GATGGTTGGTCCAAATTCAC+TGG - Chr7:69435246-69435265 MsG0780039821.01.T01:CDS 45.0%
! GCCTTCTAGAAGGCAATTGA+TGG + Chr7:69434218-69434237 None:intergenic 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG - Chr7:69434593-69434612 MsG0780039821.01.T01:CDS 45.0%
!! AGAGGTACCATGCAACAAGT+GGG + Chr7:69434939-69434958 None:intergenic 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG + Chr7:69435066-69435085 None:intergenic 45.0%
!!! ACTGGTGGGTTTTTCTTTGG+AGG - Chr7:69435264-69435283 MsG0780039821.01.T01:CDS 45.0%
AGACCTTTGGTCACACCTAG+GGG - Chr7:69434171-69434190 MsG0780039821.01.T01:CDS 50.0%
AGTTCTGTAGCCTGGTAGGT+TGG + Chr7:69434962-69434981 None:intergenic 50.0%
CGCTTCAAACAGCTGATGGT+TGG - Chr7:69435232-69435251 MsG0780039821.01.T01:intron 50.0%
CTAGACCTTTGGTCACACCT+AGG - Chr7:69434169-69434188 MsG0780039821.01.T01:CDS 50.0%
CTGCAGTGAACCCACTTCTT+AGG - Chr7:69434980-69434999 MsG0780039821.01.T01:intron 50.0%
GACCAAAGGTCTAGTGAAGC+TGG + Chr7:69434163-69434182 None:intergenic 50.0%
GATCCGCTTCAAACAGCTGA+TGG - Chr7:69435228-69435247 MsG0780039821.01.T01:intron 50.0%
GCAGTGAACCCACTTCTTAG+GGG - Chr7:69434982-69435001 MsG0780039821.01.T01:intron 50.0%
GTCCAGCTTCACTAGACCTT+TGG - Chr7:69434158-69434177 MsG0780039821.01.T01:exon 50.0%
TTCACTGCAGTTCTGTAGCC+TGG + Chr7:69434970-69434989 None:intergenic 50.0%
! ATTGAAGTCGGCTTAGCCCA+CGG - Chr7:69435006-69435025 MsG0780039821.01.T01:intron 50.0%
! CACTGGTTGAATTGAGGGAC+CGG + Chr7:69434050-69434069 None:intergenic 50.0%
! CATCAAGCCCACTTGTTGCA+TGG - Chr7:69434929-69434948 MsG0780039821.01.T01:intron 50.0%
! GGTTGGTCCAAATTCACTGG+TGG - Chr7:69435249-69435268 MsG0780039821.01.T01:CDS 50.0%
! TCAGCTGTTTGAAGCGGATC+GGG + Chr7:69435228-69435247 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG + Chr7:69434141-69434160 None:intergenic 50.0%
!! GAGAGGTACCATGCAACAAG+TGG + Chr7:69434940-69434959 None:intergenic 50.0%
ACCGAATATGCCGGATCAGC+AGG - Chr7:69435075-69435094 MsG0780039821.01.T01:intron 55.0%
AGTCCCCTAGGTGTGACCAA+AGG + Chr7:69434177-69434196 None:intergenic 55.0%
CATGGCAGCTGCTTCTCCTA+TGG - Chr7:69434122-69434141 MsG0780039821.01.T01:three_prime_UTR 55.0%
CGGCCCGTTAAGGTCAAAGA+TGG + Chr7:69435195-69435214 None:intergenic 55.0%
CTGCAGTTCTGTAGCCTGGT+AGG + Chr7:69434966-69434985 None:intergenic 55.0%
CTGCTTCTTACGGCCCGTTA+AGG + Chr7:69435205-69435224 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG + Chr7:69435038-69435057 None:intergenic 55.0%
GAAGAGCCACAAAGTCCCCT+AGG + Chr7:69434189-69434208 None:intergenic 55.0%
GCCTACGAGGAAGAATCCGT+GGG + Chr7:69435025-69435044 None:intergenic 55.0%
GCCTGCTGATCCGGCATATT+CGG + Chr7:69435079-69435098 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG - Chr7:69435039-69435058 MsG0780039821.01.T01:intron 55.0%
GTCACACCTAGGGGACTTTG+TGG - Chr7:69434180-69434199 MsG0780039821.01.T01:CDS 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG - Chr7:69435040-69435059 MsG0780039821.01.T01:intron 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG - Chr7:69435049-69435068 MsG0780039821.01.T01:intron 55.0%
TGCAAGAGAGCCTGCTGATC+CGG + Chr7:69435088-69435107 None:intergenic 55.0%
TGGTACCTCTCCAACCTACC+AGG - Chr7:69434949-69434968 MsG0780039821.01.T01:intron 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG + Chr7:69435048-69435067 None:intergenic 55.0%
! TCTCTGTGCTGCTCCACTTG+TGG - Chr7:69434081-69434100 MsG0780039821.01.T01:three_prime_UTR 55.0%
! TGTAGCCTGGTAGGTTGGAG+AGG + Chr7:69434957-69434976 None:intergenic 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG + Chr7:69435061-69435080 None:intergenic 55.0%
CAGGCTCTCTTGCAGCTGCT+GGG - Chr7:69435094-69435113 MsG0780039821.01.T01:intron 60.0%
GCCCACGGATTCTTCCTCGT+AGG - Chr7:69435021-69435040 MsG0780039821.01.T01:intron 60.0%
GCGGATCGGGCTGCTTCTTA+CGG + Chr7:69435215-69435234 None:intergenic 60.0%
GGCCTACGAGGAAGAATCCG+TGG + Chr7:69435026-69435045 None:intergenic 60.0%
! GAGGCCCGGCTTTAACGAAC+GGG + Chr7:69435047-69435066 None:intergenic 60.0%
GCAGGCTCTCTTGCAGCTGC+TGG - Chr7:69435093-69435112 MsG0780039821.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 69434044 69435473 69434044 ID=MsG0780039821.01;Name=MsG0780039821.01
Chr7 mRNA 69434044 69435473 69434044 ID=MsG0780039821.01.T01;Parent=MsG0780039821.01;Name=MsG0780039821.01.T01;_AED=0.49;_eAED=0.49;_QI=79|1|1|1|1|1|2|120|214
Chr7 exon 69434044 69434655 69434044 ID=MsG0780039821.01.T01:exon:12532;Parent=MsG0780039821.01.T01
Chr7 exon 69435242 69435473 69435242 ID=MsG0780039821.01.T01:exon:12531;Parent=MsG0780039821.01.T01
Chr7 five_prime_UTR 69435395 69435473 69435395 ID=MsG0780039821.01.T01:five_prime_utr;Parent=MsG0780039821.01.T01
Chr7 CDS 69435242 69435394 69435242 ID=MsG0780039821.01.T01:cds;Parent=MsG0780039821.01.T01
Chr7 CDS 69434164 69434655 69434164 ID=MsG0780039821.01.T01:cds;Parent=MsG0780039821.01.T01
Chr7 three_prime_UTR 69434044 69434163 69434044 ID=MsG0780039821.01.T01:three_prime_utr;Parent=MsG0780039821.01.T01
Gene Sequence

>MsG0780039821.01.T01

ATGGCAGCTGCTTCTCCTATGGCAAGCCAACTCAAGTCCAGCTTCACTAGACCTTTGGTCACACCTAGGGGACTTTGTGGCTCTTCCCCACTCCATCAATTGCCTTCTAGAAGGCAATTTAACTTCACTGTTAAGGCAATCCAATCTGAAAAGCAAAATTACCAAGTGATTCAACCAATCAACGGTGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCACTTGTTGCATGGTACCTCTCCAACCTACCAGGCTACAGAACTGCAGTGAACCCACTTCTTAGGGGAATTGAAGTCGGCTTAGCCCACGGATTCTTCCTCGTAGGCCCGTTCGTTAAAGCCGGGCCTCTAAGGAACACCGAATATGCCGGATCAGCAGGCTCTCTTGCAGCTGCTGGGCTTATTGTTATCCTAAGCATTTGCCTTACAATCTATGGAGTTTCATCATTCAATGAAGGTGATGCATCAACTGCTCCATCTTTGACCTTAACGGGCCGTAAGAAGCAGCCCGATCCGCTTCAAACAGCTGATGGTTGGTCCAAATTCACTGGTGGGTTTTTCTTTGGAGGAATTTCTGGTGTTACTTGGGCTTACTTCCTTCTATATGTTTTGGATCTTCCATACTTTGTTAAGTAA

Protein sequence

>MsG0780039821.01.T01

MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKQNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDASTAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK*