Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024463.01.T01 | PNY11270.1 | 68.966 | 174 | 16 | 2 | 1 | 174 | 126 | 261 | 3.18E-71 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024463.01.T01 | Q5VQ09 | 57.303 | 178 | 37 | 3 | 1 | 177 | 713 | 852 | 1.52E-56 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024463.01.T01 | A0A2K3P7L0 | 68.966 | 174 | 16 | 2 | 1 | 174 | 126 | 261 | 1.52e-71 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048856.01 | MsG0580024463.01 | 0.809790 | 1.589463e-50 | 9.420213e-48 |
| MsG0180000139.01 | MsG0580024463.01 | 0.829644 | 4.585759e-55 | 4.721892e-52 |
| MsG0180000557.01 | MsG0580024463.01 | 0.801215 | 1.000367e-48 | 4.750577e-46 |
| MsG0180000835.01 | MsG0580024463.01 | 0.813394 | 2.616770e-51 | 1.706910e-48 |
| MsG0180003455.01 | MsG0580024463.01 | 0.806500 | 7.983030e-50 | 4.339771e-47 |
| MsG0180003920.01 | MsG0580024463.01 | 0.834763 | 2.483172e-56 | 2.975336e-53 |
| MsG0180003943.01 | MsG0580024463.01 | 0.808219 | 3.448508e-50 | 1.960519e-47 |
| MsG0180003951.01 | MsG0580024463.01 | 0.851530 | 8.357008e-61 | 1.696525e-57 |
| MsG0180004049.01 | MsG0580024463.01 | 0.802057 | 6.719438e-49 | 3.259758e-46 |
| MsG0180004099.01 | MsG0580024463.01 | 0.810670 | 1.027014e-50 | 6.229368e-48 |
| MsG0180004389.01 | MsG0580024463.01 | 0.810535 | 1.098440e-50 | 6.638135e-48 |
| MsG0180004975.01 | MsG0580024463.01 | 0.814664 | 1.373270e-51 | 9.270646e-49 |
| MsG0180006000.01 | MsG0580024463.01 | 0.801972 | 6.996591e-49 | 3.386623e-46 |
| MsG0180006017.01 | MsG0580024463.01 | 0.800434 | 1.444066e-48 | 6.723330e-46 |
| MsG0280006299.01 | MsG0580024463.01 | 0.801796 | 7.605095e-49 | 3.664924e-46 |
| MsG0280006405.01 | MsG0580024463.01 | 0.859719 | 3.404341e-63 | 9.077918e-60 |
| MsG0280010778.01 | MsG0580024463.01 | 0.803782 | 2.958064e-49 | 1.499696e-46 |
| MsG0280010788.01 | MsG0580024463.01 | 0.830882 | 2.286472e-55 | 2.440693e-52 |
| MsG0280010992.01 | MsG0580024463.01 | 0.806704 | 7.228984e-50 | 3.950399e-47 |
| MsG0280011014.01 | MsG0580024463.01 | 0.809412 | 1.916847e-50 | 1.124704e-47 |
| MsG0280011101.01 | MsG0580024463.01 | 0.819730 | 9.963796e-53 | 7.730224e-50 |
| MsG0280011339.01 | MsG0580024463.01 | 0.821406 | 4.106214e-53 | 3.337646e-50 |
| MsG0280011341.01 | MsG0580024463.01 | 0.806764 | 7.019359e-50 | 3.841862e-47 |
| MsG0280011416.01 | MsG0580024463.01 | 0.815052 | 1.126419e-51 | 7.684211e-49 |
| MsG0380013475.01 | MsG0580024463.01 | 0.800254 | 1.570895e-48 | 7.280525e-46 |
| MsG0380014537.01 | MsG0580024463.01 | 0.809702 | 1.660792e-50 | 9.819716e-48 |
| MsG0380014874.01 | MsG0580024463.01 | 0.810372 | 1.191338e-50 | 7.168483e-48 |
| MsG0480019350.01 | MsG0580024463.01 | 0.827842 | 1.251210e-54 | 1.222196e-51 |
| MsG0480019710.01 | MsG0580024463.01 | 0.809841 | 1.549906e-50 | 9.198001e-48 |
| MsG0480020402.01 | MsG0580024463.01 | 0.814467 | 1.517706e-51 | 1.019236e-48 |
| MsG0480020699.01 | MsG0580024463.01 | 0.810476 | 1.131048e-50 | 6.824687e-48 |
| MsG0480020739.01 | MsG0580024463.01 | 0.849715 | 2.706556e-60 | 5.177109e-57 |
| MsG0480020909.01 | MsG0580024463.01 | 0.839271 | 1.751021e-57 | 2.405683e-54 |
| MsG0480021138.01 | MsG0580024463.01 | 0.808596 | 2.866199e-50 | 1.645545e-47 |
| MsG0480022045.01 | MsG0580024463.01 | 0.800582 | 1.347176e-48 | 6.295847e-46 |
| MsG0480022788.01 | MsG0580024463.01 | 0.813091 | 3.050515e-51 | 1.973264e-48 |
| MsG0480023463.01 | MsG0580024463.01 | 0.844519 | 7.189148e-59 | 1.163634e-55 |
| MsG0580024197.01 | MsG0580024463.01 | 0.807317 | 5.361635e-50 | 2.977082e-47 |
| MsG0580024317.01 | MsG0580024463.01 | 0.817684 | 2.902057e-52 | 2.127742e-49 |
| MsG0580024463.01 | MsG0580026059.01 | 0.810996 | 8.729232e-51 | 5.341493e-48 |
| MsG0580024463.01 | MsG0580027431.01 | 0.829279 | 5.627068e-55 | 5.733343e-52 |
| MsG0580024463.01 | MsG0580027925.01 | 0.804580 | 2.017533e-49 | 1.044062e-46 |
| MsG0580024463.01 | MsG0580029640.01 | 0.806844 | 6.752439e-50 | 3.703549e-47 |
| MsG0580024463.01 | MsG0580029729.01 | 0.801211 | 1.001962e-48 | 4.757811e-46 |
| MsG0580024463.01 | MsG0680031488.01 | 0.820511 | 6.601138e-53 | 5.233443e-50 |
| MsG0580024463.01 | MsG0680034853.01 | 0.814670 | 1.368776e-51 | 9.241990e-49 |
| MsG0580024463.01 | MsG0780036136.01 | 0.804607 | 1.991316e-49 | 1.031214e-46 |
| MsG0580024463.01 | MsG0780036752.01 | 0.821239 | 4.488752e-53 | 3.631676e-50 |
| MsG0580024463.01 | MsG0780036815.01 | 0.838197 | 3.317338e-57 | 4.410433e-54 |
| MsG0580024463.01 | MsG0780037054.01 | 0.808744 | 2.663989e-50 | 1.535392e-47 |
| MsG0580024463.01 | MsG0780038424.01 | 0.803628 | 3.183282e-49 | 1.607510e-46 |
| MsG0580024463.01 | MsG0780038603.01 | 0.804493 | 2.103464e-49 | 1.086072e-46 |
| MsG0580024463.01 | MsG0780039170.01 | 0.806754 | 7.053996e-50 | 3.859809e-47 |
| MsG0580024463.01 | MsG0780040057.01 | 0.806158 | 9.420564e-50 | 5.077038e-47 |
| MsG0580024463.01 | MsG0780040926.01 | 0.803114 | 4.067962e-49 | 2.027242e-46 |
| MsG0580024463.01 | MsG0880041986.01 | 0.828051 | 1.114170e-54 | 1.095072e-51 |
| MsG0580024463.01 | MsG0880042091.01 | 0.816103 | 6.570069e-52 | 4.613157e-49 |
| MsG0580024463.01 | MsG0880042380.01 | 0.804027 | 2.630097e-49 | 1.341891e-46 |
| MsG0580024463.01 | MsG0880042412.01 | 0.820820 | 5.603447e-53 | 4.481093e-50 |
| MsG0580024463.01 | MsG0880043614.01 | 0.832209 | 1.077234e-55 | 1.195839e-52 |
| MsG0580024463.01 | MsG0880044782.01 | 0.806164 | 9.395944e-50 | 5.064524e-47 |
| MsG0580024463.01 | MsG0880045294.01 | 0.823181 | 1.590579e-53 | 1.359637e-50 |
| MsG0580024463.01 | MsG0880045483.01 | 0.849945 | 2.333847e-60 | 4.498542e-57 |
| MsG0580024463.01 | MsG0880046059.01 | 0.813085 | 3.059239e-51 | 1.978627e-48 |
| MsG0380015332.01 | MsG0580024463.01 | 0.822411 | 2.403104e-53 | 2.009971e-50 |
| MsG0380015363.01 | MsG0580024463.01 | 0.807398 | 5.154746e-50 | 2.868212e-47 |
| MsG0380015463.01 | MsG0580024463.01 | 0.801206 | 1.004293e-48 | 4.768172e-46 |
| MsG0380015555.01 | MsG0580024463.01 | 0.814784 | 1.291810e-51 | 8.748979e-49 |
| MsG0380015786.01 | MsG0580024463.01 | 0.834229 | 3.381262e-56 | 3.987308e-53 |
| MsG0380015875.01 | MsG0580024463.01 | 0.803285 | 3.749980e-49 | 1.876993e-46 |
| MsG0380015944.01 | MsG0580024463.01 | 0.809775 | 1.601817e-50 | 9.489752e-48 |
| MsG0380016126.01 | MsG0580024463.01 | 0.817655 | 2.947080e-52 | 2.158958e-49 |
| MsG0380016247.01 | MsG0580024463.01 | 0.811230 | 7.765940e-51 | 4.780965e-48 |
| MsG0380016893.01 | MsG0580024463.01 | 0.827262 | 1.724384e-54 | 1.656303e-51 |
| MsG0380016920.01 | MsG0580024463.01 | 0.812902 | 3.356024e-51 | 2.160065e-48 |
| MsG0380016970.01 | MsG0580024463.01 | 0.811617 | 6.400607e-51 | 3.980599e-48 |
| MsG0380017159.01 | MsG0580024463.01 | 0.804326 | 2.279533e-49 | 1.171945e-46 |
| MsG0380017996.01 | MsG0580024463.01 | 0.831222 | 1.886110e-55 | 2.033665e-52 |
| MsG0380018045.01 | MsG0580024463.01 | 0.808199 | 3.482487e-50 | 1.978833e-47 |
| MsG0280007067.01 | MsG0580024463.01 | 0.801235 | 9.909132e-49 | 4.708163e-46 |
| MsG0280007452.01 | MsG0580024463.01 | 0.813349 | 2.677597e-51 | 1.744385e-48 |
| MsG0280007506.01 | MsG0580024463.01 | 0.826399 | 2.771350e-54 | 2.596193e-51 |
| MsG0280007955.01 | MsG0580024463.01 | 0.840312 | 9.380725e-58 | 1.330900e-54 |
| MsG0280008457.01 | MsG0580024463.01 | 0.801321 | 9.515980e-49 | 4.531113e-46 |
| MsG0280009794.01 | MsG0580024463.01 | 0.850834 | 1.314083e-60 | 2.607857e-57 |
| MsG0280010015.01 | MsG0580024463.01 | 0.832532 | 8.957684e-56 | 1.004023e-52 |
| MsG0280010148.01 | MsG0580024463.01 | 0.801620 | 8.260911e-49 | 3.963204e-46 |
| MsG0280010489.01 | MsG0580024463.01 | 0.805453 | 1.325151e-49 | 7.013598e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024463.01.T01 | MTR_5g011500 | 71.264 | 174 | 12 | 2 | 1 | 174 | 716 | 851 | 3.37e-74 | 239 |
| MsG0580024463.01.T01 | MTR_7g075060 | 57.471 | 174 | 36 | 2 | 1 | 174 | 710 | 845 | 1.13e-56 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024463.01.T01 | AT1G01950 | 58.140 | 172 | 34 | 2 | 3 | 174 | 577 | 710 | 2.94e-56 | 189 |
| MsG0580024463.01.T01 | AT1G01950 | 58.140 | 172 | 34 | 2 | 3 | 174 | 701 | 834 | 7.74e-56 | 189 |
| MsG0580024463.01.T01 | AT1G01950 | 58.140 | 172 | 34 | 2 | 3 | 174 | 718 | 851 | 8.16e-56 | 189 |
| MsG0580024463.01.T01 | AT1G01950 | 58.140 | 172 | 34 | 2 | 3 | 174 | 739 | 872 | 9.41e-56 | 189 |
| MsG0580024463.01.T01 | AT1G12430 | 57.225 | 173 | 36 | 2 | 1 | 173 | 740 | 874 | 4.85e-55 | 187 |
| MsG0580024463.01.T01 | AT1G12430 | 56.897 | 174 | 36 | 3 | 1 | 173 | 740 | 875 | 2.10e-53 | 182 |
| MsG0580024463.01.T01 | AT3G54870 | 52.577 | 97 | 46 | 0 | 74 | 170 | 917 | 1013 | 3.84e-27 | 107 |
Find 72 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTAAAGGGGTGCTTTA+TGG | 0.177299 | 5:+5231166 | MsG0580024463.01.T01:CDS |
| CGAAAAGTATTGTTTATCTT+TGG | 0.217221 | 5:-5231346 | None:intergenic |
| ATAAGCTACAAACAGAATTA+AGG | 0.234499 | 5:+5230601 | MsG0580024463.01.T01:CDS |
| TCGTTGACTTGATTAAATTA+TGG | 0.255517 | 5:-5231482 | None:intergenic |
| TTTCTCTTTGTAACAAATCT+AGG | 0.270928 | 5:+5231383 | MsG0580024463.01.T01:three_prime_UTR |
| ACAACTCTTCGCATGGTTGC+TGG | 0.289859 | 5:+5230297 | MsG0580024463.01.T01:CDS |
| CTCATTTCGGTTTGGAAAGC+GGG | 0.314386 | 5:-5231264 | None:intergenic |
| AATGCAAGAGATATGATTAA+AGG | 0.315607 | 5:+5231154 | MsG0580024463.01.T01:CDS |
| ATAACGAAGCCTCGTCAATT+AGG | 0.318051 | 5:+5230997 | MsG0580024463.01.T01:CDS |
| CAACTCTTCGCATGGTTGCT+GGG | 0.318637 | 5:+5230298 | MsG0580024463.01.T01:CDS |
| TGATTAAAGGGGTGCTTTAT+GGG | 0.324583 | 5:+5231167 | MsG0580024463.01.T01:CDS |
| GAATTGTTTCACCAATTGTT+AGG | 0.326889 | 5:+5231692 | MsG0580024463.01.T01:three_prime_UTR |
| CTGGTCCACTTGCTAGCTTC+TGG | 0.351854 | 5:+5231517 | MsG0580024463.01.T01:three_prime_UTR |
| ATTCTGTTTGTAGCTTATCT+AGG | 0.353412 | 5:-5230596 | None:intergenic |
| ATGCAAGAGATATGATTAAA+GGG | 0.377146 | 5:+5231155 | MsG0580024463.01.T01:CDS |
| TAAGCTACAAACAGAATTAA+GGG | 0.397299 | 5:+5230602 | MsG0580024463.01.T01:CDS |
| CACCCGCATACGCCTCATTT+CGG | 0.404224 | 5:-5231277 | None:intergenic |
| GACAGAGTGCAAGCTCAATA+TGG | 0.408065 | 5:-5231022 | None:intergenic |
| GGGTTTACATTCCTAACAAT+TGG | 0.409453 | 5:-5231703 | None:intergenic |
| TTTGTAGCTTATCTAGGTGC+AGG | 0.417584 | 5:-5230590 | None:intergenic |
| ATTGCTAATCTCTGTGGAAA+TGG | 0.432405 | 5:+5230324 | MsG0580024463.01.T01:CDS |
| AAGAGTCTTTATGTCTTCTC+TGG | 0.438460 | 5:-5231217 | None:intergenic |
| GCAACCTGCGCATGCACATC+AGG | 0.445972 | 5:-5230672 | None:intergenic |
| TTCGGTTTGGAAAGCGGGGA+TGG | 0.453434 | 5:-5231259 | None:intergenic |
| TCAACGAGGTGGTGTCTCTC+TGG | 0.464061 | 5:+5231498 | MsG0580024463.01.T01:three_prime_UTR |
| TCGAGGATGGTGCTCTTCCA+TGG | 0.474867 | 5:+5230958 | MsG0580024463.01.T01:CDS |
| GCATACGCCTCATTTCGGTT+TGG | 0.477143 | 5:-5231272 | None:intergenic |
| TGGGTTCTTGTATTCCATCA+TGG | 0.489112 | 5:+5231454 | MsG0580024463.01.T01:three_prime_UTR |
| GAAGAGCACCATCCTCGATA+AGG | 0.491452 | 5:-5230953 | None:intergenic |
| AACTCTTCGCATGGTTGCTG+GGG | 0.504124 | 5:+5230299 | MsG0580024463.01.T01:CDS |
| TTTGTATATGAAATAAATAG+AGG | 0.507101 | 5:+5231552 | MsG0580024463.01.T01:three_prime_UTR |
| AGGTGGTATCAAGGCACTGC+TGG | 0.514995 | 5:+5230629 | MsG0580024463.01.T01:CDS |
| AGCAACCATGCGAAGAGTTG+TGG | 0.523391 | 5:-5230295 | None:intergenic |
| AACCGAAATGAGGCGTATGC+GGG | 0.525426 | 5:+5231275 | MsG0580024463.01.T01:three_prime_UTR |
| AAGGGGTGAAGGTGGTATCA+AGG | 0.533688 | 5:+5230620 | MsG0580024463.01.T01:CDS |
| AAACTCTAGACAAGTGTTCG+TGG | 0.541508 | 5:+5231434 | MsG0580024463.01.T01:three_prime_UTR |
| AAATTATGGCCATTCCATGA+TGG | 0.543565 | 5:-5231468 | None:intergenic |
| TTGTAACAAATCTAGGTGGA+TGG | 0.555113 | 5:+5231390 | MsG0580024463.01.T01:three_prime_UTR |
| AGATCTTTCCTTATCGAGGA+TGG | 0.557455 | 5:+5230945 | MsG0580024463.01.T01:CDS |
| TCTTGTATTCCATCATGGAA+TGG | 0.562056 | 5:+5231459 | MsG0580024463.01.T01:three_prime_UTR |
| CCGCTTTCCAAACCGAAATG+AGG | 0.573296 | 5:+5231265 | MsG0580024463.01.T01:three_prime_UTR |
| GGTGGTATCAAGGCACTGCT+GGG | 0.578822 | 5:+5230630 | MsG0580024463.01.T01:CDS |
| CCTCATTTCGGTTTGGAAAG+CGG | 0.579269 | 5:-5231265 | None:intergenic |
| AAACCGAAATGAGGCGTATG+CGG | 0.581554 | 5:+5231274 | MsG0580024463.01.T01:three_prime_UTR |
| CAAGAACTCATTATGGCCCA+AGG | 0.586573 | 5:+5230229 | None:intergenic |
| AACTCTAGACAAGTGTTCGT+GGG | 0.587135 | 5:+5231435 | MsG0580024463.01.T01:three_prime_UTR |
| TGGAAGATCTTTCCTTATCG+AGG | 0.596071 | 5:+5230941 | MsG0580024463.01.T01:CDS |
| GGTTTGGAAAGCGGGGATGG+AGG | 0.596875 | 5:-5231256 | None:intergenic |
| AAGATCCACAACTCTTCGCA+TGG | 0.597248 | 5:+5230290 | MsG0580024463.01.T01:CDS |
| ACATCCTGATGTGCATGCGC+AGG | 0.599789 | 5:+5230668 | MsG0580024463.01.T01:CDS |
| CAAACAGAATTAAGGGGTGA+AGG | 0.610483 | 5:+5230609 | MsG0580024463.01.T01:CDS |
| TATCAAGGCACTGCTGGGAA+TGG | 0.611567 | 5:+5230635 | MsG0580024463.01.T01:CDS |
| CTCTTTGTAACAAATCTAGG+TGG | 0.611895 | 5:+5231386 | MsG0580024463.01.T01:three_prime_UTR |
| ACATGCCAGAAGCTAGCAAG+TGG | 0.616758 | 5:-5231522 | None:intergenic |
| CTCTGTCATTTAGCACAACA+CGG | 0.622977 | 5:+5231038 | MsG0580024463.01.T01:CDS |
| GAGTTGTGGATCTTCAGCAT+TGG | 0.625004 | 5:-5230281 | None:intergenic |
| TTGTAGCTTATCTAGGTGCA+GGG | 0.628421 | 5:-5230589 | None:intergenic |
| AGAACTCATTATGGCCCAAG+GGG | 0.629592 | 5:+5230231 | None:intergenic |
| ATTTCCACAGAGATTAGCAA+TGG | 0.630537 | 5:-5230322 | None:intergenic |
| ACAGAATTAAGGGGTGAAGG+TGG | 0.635776 | 5:+5230612 | MsG0580024463.01.T01:CDS |
| AAGAACTCATTATGGCCCAA+GGG | 0.636230 | 5:+5230230 | None:intergenic |
| TCATTTCGGTTTGGAAAGCG+GGG | 0.638510 | 5:-5231263 | None:intergenic |
| TGCAAGAGATATGATTAAAG+GGG | 0.646233 | 5:+5231156 | MsG0580024463.01.T01:CDS |
| AAGCTACAAACAGAATTAAG+GGG | 0.647749 | 5:+5230603 | MsG0580024463.01.T01:CDS |
| GGGGCCATTGCTAATCTCTG+TGG | 0.650933 | 5:+5230318 | MsG0580024463.01.T01:CDS |
| CATTGTATAGGGTTAAAGAG+TGG | 0.651485 | 5:+5230921 | MsG0580024463.01.T01:intron |
| GAGTCAAGAGCATCTAGTCA+AGG | 0.655543 | 5:+5230723 | MsG0580024463.01.T01:CDS |
| GTGCATGCGCAGGTTGCTCG+AGG | 0.683277 | 5:+5230678 | MsG0580024463.01.T01:CDS |
| ATTTAATCAAGTCAACGAGG+TGG | 0.703735 | 5:+5231487 | MsG0580024463.01.T01:three_prime_UTR |
| AATATGGCGCCTAATTGACG+AGG | 0.717183 | 5:-5231006 | None:intergenic |
| GAACTCATTATGGCCCAAGG+GGG | 0.739076 | 5:+5230232 | None:intergenic |
| ATAATTTAATCAAGTCAACG+AGG | 0.826637 | 5:+5231484 | MsG0580024463.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGTTATTTATTTTTTTG+AGG | + | Chr5:5231635-5231654 | MsG0580024463.01.T01:three_prime_UTR | 10.0% |
| !! | TTTGTATATGAAATAAATAG+AGG | + | Chr5:5231552-5231571 | MsG0580024463.01.T01:three_prime_UTR | 15.0% |
| !!! | ATGAAATTTTTGAATGTTTA+CGG | - | Chr5:5231728-5231747 | None:intergenic | 15.0% |
| !!! | ACTAGAAGCTAAATTTTTAT+TGG | + | Chr5:5231088-5231107 | MsG0580024463.01.T01:intron | 20.0% |
| !!! | CAAAGATAAACAATACTTTT+CGG | + | Chr5:5231347-5231366 | MsG0580024463.01.T01:three_prime_UTR | 20.0% |
| !!! | CTAGAAGCTAAATTTTTATT+GGG | + | Chr5:5231089-5231108 | MsG0580024463.01.T01:intron | 20.0% |
| !!! | TGAAATTTTTGAATGTTTAC+GGG | - | Chr5:5231727-5231746 | None:intergenic | 20.0% |
| !!! | TTTTAGAAAAATAATGAAGC+TGG | + | Chr5:5231314-5231333 | MsG0580024463.01.T01:three_prime_UTR | 20.0% |
| ! | AATGCAAGAGATATGATTAA+AGG | + | Chr5:5231154-5231173 | MsG0580024463.01.T01:CDS | 25.0% |
| ! | ATAAGCTACAAACAGAATTA+AGG | + | Chr5:5230601-5230620 | MsG0580024463.01.T01:CDS | 25.0% |
| ! | ATAATTTAATCAAGTCAACG+AGG | + | Chr5:5231484-5231503 | MsG0580024463.01.T01:three_prime_UTR | 25.0% |
| ! | ATGACACTTATTCCTTTAAA+AGG | + | Chr5:5230784-5230803 | MsG0580024463.01.T01:intron | 25.0% |
| ! | ATGCAAGAGATATGATTAAA+GGG | + | Chr5:5231155-5231174 | MsG0580024463.01.T01:CDS | 25.0% |
| ! | TAAGCTACAAACAGAATTAA+GGG | + | Chr5:5230602-5230621 | MsG0580024463.01.T01:CDS | 25.0% |
| ! | TTTCTCTTTGTAACAAATCT+AGG | + | Chr5:5231383-5231402 | MsG0580024463.01.T01:three_prime_UTR | 25.0% |
| !! | AACAATACTTTTCGGTATTT+TGG | + | Chr5:5231355-5231374 | MsG0580024463.01.T01:three_prime_UTR | 25.0% |
| !! | ACAATACTTTTCGGTATTTT+GGG | + | Chr5:5231356-5231375 | MsG0580024463.01.T01:three_prime_UTR | 25.0% |
| !! | GAAATTTTTGAATGTTTACG+GGG | - | Chr5:5231726-5231745 | None:intergenic | 25.0% |
| !!! | CGAAAAGTATTGTTTATCTT+TGG | - | Chr5:5231349-5231368 | None:intergenic | 25.0% |
| !!! | TCGTTGACTTGATTAAATTA+TGG | - | Chr5:5231485-5231504 | None:intergenic | 25.0% |
| AAGCTACAAACAGAATTAAG+GGG | + | Chr5:5230603-5230622 | MsG0580024463.01.T01:CDS | 30.0% | |
| AATGTGGCAAAACTTAAACT+CGG | - | Chr5:5230905-5230924 | None:intergenic | 30.0% | |
| ATTCTGTTTGTAGCTTATCT+AGG | - | Chr5:5230599-5230618 | None:intergenic | 30.0% | |
| GAATTGTTTCACCAATTGTT+AGG | + | Chr5:5231692-5231711 | MsG0580024463.01.T01:three_prime_UTR | 30.0% | |
| TGCAAGAGATATGATTAAAG+GGG | + | Chr5:5231156-5231175 | MsG0580024463.01.T01:CDS | 30.0% | |
| ! | AAGTTTTGCCACATTGTATA+GGG | + | Chr5:5230910-5230929 | MsG0580024463.01.T01:intron | 30.0% |
| ! | TAAGTTTTGCCACATTGTAT+AGG | + | Chr5:5230909-5230928 | MsG0580024463.01.T01:intron | 30.0% |
| ! | TTTGCATTTTGAACAATCCA+TGG | - | Chr5:5230978-5230997 | None:intergenic | 30.0% |
| AAATTATGGCCATTCCATGA+TGG | - | Chr5:5231471-5231490 | None:intergenic | 35.0% | |
| AAGAGTCTTTATGTCTTCTC+TGG | - | Chr5:5231220-5231239 | None:intergenic | 35.0% | |
| AGAAAAATAATGAAGCTGGC+TGG | + | Chr5:5231318-5231337 | MsG0580024463.01.T01:three_prime_UTR | 35.0% | |
| ATATCTCTTGCATTTGCTTC+TGG | - | Chr5:5231148-5231167 | None:intergenic | 35.0% | |
| ATTGCTAATCTCTGTGGAAA+TGG | + | Chr5:5230324-5230343 | MsG0580024463.01.T01:CDS | 35.0% | |
| ATTTAATCAAGTCAACGAGG+TGG | + | Chr5:5231487-5231506 | MsG0580024463.01.T01:three_prime_UTR | 35.0% | |
| ATTTCCACAGAGATTAGCAA+TGG | - | Chr5:5230325-5230344 | None:intergenic | 35.0% | |
| CATTGTATAGGGTTAAAGAG+TGG | + | Chr5:5230921-5230940 | MsG0580024463.01.T01:intron | 35.0% | |
| CTCTTTAACCCTATACAATG+TGG | - | Chr5:5230921-5230940 | None:intergenic | 35.0% | |
| CTCTTTGTAACAAATCTAGG+TGG | + | Chr5:5231386-5231405 | MsG0580024463.01.T01:three_prime_UTR | 35.0% | |
| GGGTTTACATTCCTAACAAT+TGG | - | Chr5:5231706-5231725 | None:intergenic | 35.0% | |
| TAGTTCTCGACTATAAGTGT+AGG | + | Chr5:5230504-5230523 | MsG0580024463.01.T01:intron | 35.0% | |
| TCTTGTATTCCATCATGGAA+TGG | + | Chr5:5231459-5231478 | MsG0580024463.01.T01:three_prime_UTR | 35.0% | |
| TTGTAACAAATCTAGGTGGA+TGG | + | Chr5:5231390-5231409 | MsG0580024463.01.T01:three_prime_UTR | 35.0% | |
| ! | ATTTTGTAGAAAGACCCTTC+TGG | + | Chr5:5230446-5230465 | MsG0580024463.01.T01:intron | 35.0% |
| ! | TGCACTCTGTATCCTTTTAA+AGG | - | Chr5:5230799-5230818 | None:intergenic | 35.0% |
| !! | ATGATTAAAGGGGTGCTTTA+TGG | + | Chr5:5231166-5231185 | MsG0580024463.01.T01:CDS | 35.0% |
| !! | TGATTAAAGGGGTGCTTTAT+GGG | + | Chr5:5231167-5231186 | MsG0580024463.01.T01:CDS | 35.0% |
| AAACTCTAGACAAGTGTTCG+TGG | + | Chr5:5231434-5231453 | MsG0580024463.01.T01:three_prime_UTR | 40.0% | |
| AACTCTAGACAAGTGTTCGT+GGG | + | Chr5:5231435-5231454 | MsG0580024463.01.T01:three_prime_UTR | 40.0% | |
| AGATCTTTCCTTATCGAGGA+TGG | + | Chr5:5230945-5230964 | MsG0580024463.01.T01:CDS | 40.0% | |
| ATAACGAAGCCTCGTCAATT+AGG | + | Chr5:5230997-5231016 | MsG0580024463.01.T01:CDS | 40.0% | |
| CAAACAGAATTAAGGGGTGA+AGG | + | Chr5:5230609-5230628 | MsG0580024463.01.T01:CDS | 40.0% | |
| TGGAAGATCTTTCCTTATCG+AGG | + | Chr5:5230941-5230960 | MsG0580024463.01.T01:CDS | 40.0% | |
| TGGGTTCTTGTATTCCATCA+TGG | + | Chr5:5231454-5231473 | MsG0580024463.01.T01:three_prime_UTR | 40.0% | |
| TTGTAGCTTATCTAGGTGCA+GGG | - | Chr5:5230592-5230611 | None:intergenic | 40.0% | |
| TTTGTAGCTTATCTAGGTGC+AGG | - | Chr5:5230593-5230612 | None:intergenic | 40.0% | |
| ! | CAGAGTTTTCATAGCTACCA+CGG | + | Chr5:5230828-5230847 | MsG0580024463.01.T01:intron | 40.0% |
| ! | CTCTGTCATTTAGCACAACA+CGG | + | Chr5:5231038-5231057 | MsG0580024463.01.T01:CDS | 40.0% |
| AAACCGAAATGAGGCGTATG+CGG | + | Chr5:5231274-5231293 | MsG0580024463.01.T01:three_prime_UTR | 45.0% | |
| AAGATCCACAACTCTTCGCA+TGG | + | Chr5:5230290-5230309 | MsG0580024463.01.T01:CDS | 45.0% | |
| AATATGGCGCCTAATTGACG+AGG | - | Chr5:5231009-5231028 | None:intergenic | 45.0% | |
| ACAGAATTAAGGGGTGAAGG+TGG | + | Chr5:5230612-5230631 | MsG0580024463.01.T01:CDS | 45.0% | |
| ACATCCACCAGAAATGTCTC+AGG | - | Chr5:5231122-5231141 | None:intergenic | 45.0% | |
| AGCTACCACGGTGCATATTT+GGG | + | Chr5:5230840-5230859 | MsG0580024463.01.T01:intron | 45.0% | |
| ATGTACTACACCTAGCCAGA+AGG | - | Chr5:5230464-5230483 | None:intergenic | 45.0% | |
| CATCCACCAGAAATGTCTCA+GGG | - | Chr5:5231121-5231140 | None:intergenic | 45.0% | |
| CGTGGTAGCTATGAAAACTC+TGG | - | Chr5:5230830-5230849 | None:intergenic | 45.0% | |
| GACAGAGTGCAAGCTCAATA+TGG | - | Chr5:5231025-5231044 | None:intergenic | 45.0% | |
| GAGTTGTGGATCTTCAGCAT+TGG | - | Chr5:5230284-5230303 | None:intergenic | 45.0% | |
| GCAGGGACACAAAACTTTAG+TGG | - | Chr5:5230575-5230594 | None:intergenic | 45.0% | |
| GGGACACAAAACTTTAGTGG+TGG | - | Chr5:5230572-5230591 | None:intergenic | 45.0% | |
| TAGCTACCACGGTGCATATT+TGG | + | Chr5:5230839-5230858 | MsG0580024463.01.T01:intron | 45.0% | |
| TGTACTACACCTAGCCAGAA+GGG | - | Chr5:5230463-5230482 | None:intergenic | 45.0% | |
| !! | CCTCATTTCGGTTTGGAAAG+CGG | - | Chr5:5231268-5231287 | None:intergenic | 45.0% |
| !! | CTCATTTCGGTTTGGAAAGC+GGG | - | Chr5:5231267-5231286 | None:intergenic | 45.0% |
| !! | GAGTCAAGAGCATCTAGTCA+AGG | + | Chr5:5230723-5230742 | MsG0580024463.01.T01:CDS | 45.0% |
| !! | TCATTTCGGTTTGGAAAGCG+GGG | - | Chr5:5231266-5231285 | None:intergenic | 45.0% |
| AACCGAAATGAGGCGTATGC+GGG | + | Chr5:5231275-5231294 | MsG0580024463.01.T01:three_prime_UTR | 50.0% | |
| AACTCTTCGCATGGTTGCTG+GGG | + | Chr5:5230299-5230318 | MsG0580024463.01.T01:CDS | 50.0% | |
| AAGGGGTGAAGGTGGTATCA+AGG | + | Chr5:5230620-5230639 | MsG0580024463.01.T01:CDS | 50.0% | |
| ACAACTCTTCGCATGGTTGC+TGG | + | Chr5:5230297-5230316 | MsG0580024463.01.T01:CDS | 50.0% | |
| ACAGCAAACTAATGCCCCCT+TGG | - | Chr5:5230249-5230268 | None:intergenic | 50.0% | |
| ACATGCCAGAAGCTAGCAAG+TGG | - | Chr5:5231525-5231544 | None:intergenic | 50.0% | |
| AGCAACCATGCGAAGAGTTG+TGG | - | Chr5:5230298-5230317 | None:intergenic | 50.0% | |
| CAACTCTTCGCATGGTTGCT+GGG | + | Chr5:5230298-5230317 | MsG0580024463.01.T01:CDS | 50.0% | |
| CAGCAAACTAATGCCCCCTT+GGG | - | Chr5:5230248-5230267 | None:intergenic | 50.0% | |
| CCGCTTTCCAAACCGAAATG+AGG | + | Chr5:5231265-5231284 | MsG0580024463.01.T01:three_prime_UTR | 50.0% | |
| GCAAACCCAAATATGCACCG+TGG | - | Chr5:5230848-5230867 | None:intergenic | 50.0% | |
| GCATACGCCTCATTTCGGTT+TGG | - | Chr5:5231275-5231294 | None:intergenic | 50.0% | |
| ! | GTAGAAAGACCCTTCTGGCT+AGG | + | Chr5:5230451-5230470 | MsG0580024463.01.T01:intron | 50.0% |
| !! | GAAGAGCACCATCCTCGATA+AGG | - | Chr5:5230956-5230975 | None:intergenic | 50.0% |
| !! | TATCAAGGCACTGCTGGGAA+TGG | + | Chr5:5230635-5230654 | MsG0580024463.01.T01:CDS | 50.0% |
| ACATCCTGATGTGCATGCGC+AGG | + | Chr5:5230668-5230687 | MsG0580024463.01.T01:CDS | 55.0% | |
| CACCCGCATACGCCTCATTT+CGG | - | Chr5:5231280-5231299 | None:intergenic | 55.0% | |
| CCACGTCCCTGAGACATTTC+TGG | + | Chr5:5231112-5231131 | MsG0580024463.01.T01:intron | 55.0% | |
| CCAGAAATGTCTCAGGGACG+TGG | - | Chr5:5231115-5231134 | None:intergenic | 55.0% | |
| GGGGCCATTGCTAATCTCTG+TGG | + | Chr5:5230318-5230337 | MsG0580024463.01.T01:CDS | 55.0% | |
| TCAACGAGGTGGTGTCTCTC+TGG | + | Chr5:5231498-5231517 | MsG0580024463.01.T01:three_prime_UTR | 55.0% | |
| TCGAGGATGGTGCTCTTCCA+TGG | + | Chr5:5230958-5230977 | MsG0580024463.01.T01:CDS | 55.0% | |
| ! | CGTCCCTGAGACATTTCTGG+TGG | + | Chr5:5231115-5231134 | MsG0580024463.01.T01:intron | 55.0% |
| ! | CTGGTCCACTTGCTAGCTTC+TGG | + | Chr5:5231517-5231536 | MsG0580024463.01.T01:three_prime_UTR | 55.0% |
| !! | AGGTGGTATCAAGGCACTGC+TGG | + | Chr5:5230629-5230648 | MsG0580024463.01.T01:CDS | 55.0% |
| !! | GGTGGTATCAAGGCACTGCT+GGG | + | Chr5:5230630-5230649 | MsG0580024463.01.T01:CDS | 55.0% |
| !! | TTCGGTTTGGAAAGCGGGGA+TGG | - | Chr5:5231262-5231281 | None:intergenic | 55.0% |
| GCAACCTGCGCATGCACATC+AGG | - | Chr5:5230675-5230694 | None:intergenic | 60.0% | |
| GGTTTGGAAAGCGGGGATGG+AGG | - | Chr5:5231259-5231278 | None:intergenic | 60.0% | |
| GTGCATGCGCAGGTTGCTCG+AGG | + | Chr5:5230678-5230697 | MsG0580024463.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 5230241 | 5231768 | 5230241 | ID=MsG0580024463.01;Name=MsG0580024463.01 |
| Chr5 | mRNA | 5230241 | 5231768 | 5230241 | ID=MsG0580024463.01.T01;Parent=MsG0580024463.01;Name=MsG0580024463.01.T01;_AED=0.52;_eAED=0.60;_QI=0|0.4|0.33|0.83|0.6|0.5|6|573|179 |
| Chr5 | exon | 5230241 | 5230440 | 5230241 | ID=MsG0580024463.01.T01:exon:29098;Parent=MsG0580024463.01.T01 |
| Chr5 | exon | 5230581 | 5230744 | 5230581 | ID=MsG0580024463.01.T01:exon:29099;Parent=MsG0580024463.01.T01 |
| Chr5 | exon | 5230931 | 5231059 | 5230931 | ID=MsG0580024463.01.T01:exon:29100;Parent=MsG0580024463.01.T01 |
| Chr5 | exon | 5231149 | 5231768 | 5231149 | ID=MsG0580024463.01.T01:exon:29101;Parent=MsG0580024463.01.T01 |
| Chr5 | CDS | 5230241 | 5230440 | 5230241 | ID=MsG0580024463.01.T01:cds;Parent=MsG0580024463.01.T01 |
| Chr5 | CDS | 5230581 | 5230744 | 5230581 | ID=MsG0580024463.01.T01:cds;Parent=MsG0580024463.01.T01 |
| Chr5 | CDS | 5230931 | 5231059 | 5230931 | ID=MsG0580024463.01.T01:cds;Parent=MsG0580024463.01.T01 |
| Chr5 | CDS | 5231149 | 5231195 | 5231149 | ID=MsG0580024463.01.T01:cds;Parent=MsG0580024463.01.T01 |
| Chr5 | three_prime_UTR | 5231196 | 5231768 | 5231196 | ID=MsG0580024463.01.T01:three_prime_utr;Parent=MsG0580024463.01.T01 |
| Gene Sequence |
| Protein sequence |
