Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047328.01.T01 | XP_003609975.1 | 96.503 | 143 | 5 | 0 | 9 | 151 | 262 | 404 | 2.19E-95 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047328.01.T01 | Q9M427 | 71.171 | 111 | 30 | 1 | 9 | 119 | 265 | 373 | 2.58E-50 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047328.01.T01 | G7JS74 | 96.503 | 143 | 5 | 0 | 9 | 151 | 262 | 404 | 1.05e-95 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001922.01 | MsG0880047328.01 | -0.829050 | 6.393163e-55 | 6.468411e-52 |
| MsG0880044546.01 | MsG0880047328.01 | -0.804192 | 2.430373e-49 | 1.245185e-46 |
| MsG0880045165.01 | MsG0880047328.01 | -0.841458 | 4.693611e-58 | 6.901439e-55 |
| MsG0880045769.01 | MsG0880047328.01 | -0.831752 | 1.397126e-55 | 1.530474e-52 |
| MsG0880046404.01 | MsG0880047328.01 | -0.810769 | 9.775538e-51 | 5.944970e-48 |
| MsG0880046509.01 | MsG0880047328.01 | 0.813457 | 2.535339e-51 | 1.656629e-48 |
| MsG0180003181.01 | MsG0880047328.01 | -0.806120 | 9.595770e-50 | 5.166375e-47 |
| MsG0180003303.01 | MsG0880047328.01 | -0.837135 | 6.215578e-57 | 7.998684e-54 |
| MsG0180004437.01 | MsG0880047328.01 | -0.816607 | 5.069247e-52 | 3.608597e-49 |
| MsG0180004444.01 | MsG0880047328.01 | -0.801758 | 7.742383e-49 | 3.727300e-46 |
| MsG0180004598.01 | MsG0880047328.01 | -0.822369 | 2.458227e-53 | 2.053640e-50 |
| MsG0180005985.01 | MsG0880047328.01 | -0.805625 | 1.219529e-49 | 6.483074e-47 |
| MsG0180006050.01 | MsG0880047328.01 | -0.805700 | 1.176289e-49 | 6.265550e-47 |
| MsG0280006367.01 | MsG0880047328.01 | -0.826635 | 2.435127e-54 | 2.296525e-51 |
| MsG0280006432.01 | MsG0880047328.01 | -0.812792 | 3.547574e-51 | 2.276535e-48 |
| MsG0780040687.01 | MsG0880047328.01 | -0.800496 | 1.402284e-48 | 6.539076e-46 |
| MsG0780040742.01 | MsG0880047328.01 | -0.815288 | 9.982358e-52 | 6.854221e-49 |
| MsG0780040920.01 | MsG0880047328.01 | -0.801134 | 1.038979e-48 | 4.924137e-46 |
| MsG0780041423.01 | MsG0880047328.01 | -0.809846 | 1.546328e-50 | 9.177657e-48 |
| MsG0880042399.01 | MsG0880047328.01 | 0.822447 | 2.357680e-53 | 1.973932e-50 |
| MsG0280011056.01 | MsG0880047328.01 | -0.800101 | 1.688079e-48 | 7.793072e-46 |
| MsG0280011075.01 | MsG0880047328.01 | -0.825912 | 3.618956e-54 | 3.343616e-51 |
| MsG0280011144.01 | MsG0880047328.01 | -0.806056 | 9.899135e-50 | 5.321031e-47 |
| MsG0680031597.01 | MsG0880047328.01 | 0.809115 | 2.218816e-50 | 1.291590e-47 |
| MsG0680033926.01 | MsG0880047328.01 | -0.802865 | 4.579492e-49 | 2.267838e-46 |
| MsG0480019170.01 | MsG0880047328.01 | -0.812706 | 3.704065e-51 | 2.371791e-48 |
| MsG0480021216.01 | MsG0880047328.01 | -0.812260 | 4.635740e-51 | 2.933506e-48 |
| MsG0480023240.01 | MsG0880047328.01 | -0.827964 | 1.169188e-54 | 1.146243e-51 |
| MsG0480023841.01 | MsG0880047328.01 | 0.851684 | 7.560888e-61 | 1.542476e-57 |
| MsG0480023923.01 | MsG0880047328.01 | -0.830428 | 2.953339e-55 | 3.110604e-52 |
| MsG0580024311.01 | MsG0880047328.01 | -0.818505 | 1.893082e-52 | 1.419644e-49 |
| MsG0580024956.01 | MsG0880047328.01 | -0.803644 | 3.158876e-49 | 1.595820e-46 |
| MsG0380015607.01 | MsG0880047328.01 | -0.845002 | 5.326428e-59 | 8.753692e-56 |
| MsG0380016117.01 | MsG0880047328.01 | -0.809939 | 1.476539e-50 | 8.784884e-48 |
| MsG0380016342.01 | MsG0880047328.01 | 0.811691 | 6.168180e-51 | 3.843515e-48 |
| MsG0480018332.01 | MsG0880047328.01 | -0.800573 | 1.353027e-48 | 6.321573e-46 |
| MsG0580027319.01 | MsG0880047328.01 | 0.806518 | 7.910644e-50 | 4.302512e-47 |
| MsG0580029371.01 | MsG0880047328.01 | -0.815262 | 1.011840e-51 | 6.942195e-49 |
| MsG0280006519.01 | MsG0880047328.01 | -0.844346 | 8.001572e-59 | 1.288067e-55 |
| MsG0280006682.01 | MsG0880047328.01 | -0.816657 | 4.939163e-52 | 3.520961e-49 |
| MsG0280009386.01 | MsG0880047328.01 | -0.801775 | 7.678129e-49 | 3.698114e-46 |
| MsG0280009774.01 | MsG0880047328.01 | -0.809214 | 2.113805e-50 | 1.233718e-47 |
| MsG0280010423.01 | MsG0880047328.01 | 0.811109 | 8.250952e-51 | 5.063295e-48 |
| MsG0780036247.01 | MsG0880047328.01 | 0.820895 | 5.385557e-53 | 4.315933e-50 |
| MsG0780039950.01 | MsG0880047328.01 | -0.810521 | 1.106012e-50 | 6.681538e-48 |
| MsG0780040125.01 | MsG0880047328.01 | -0.807537 | 4.815134e-50 | 2.688837e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047328.01.T01 | MTR_4g124940 | 96.503 | 143 | 5 | 0 | 9 | 151 | 262 | 404 | 2.66e-99 | 291 |
| MsG0880047328.01.T01 | MTR_8g022050 | 60.127 | 158 | 48 | 4 | 5 | 151 | 274 | 427 | 2.13e-48 | 161 |
| MsG0880047328.01.T01 | MTR_3g109090 | 47.853 | 163 | 64 | 3 | 10 | 151 | 262 | 424 | 2.90e-41 | 142 |
| MsG0880047328.01.T01 | MTR_3g109090 | 47.853 | 163 | 64 | 3 | 10 | 151 | 278 | 440 | 4.62e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047328.01.T01 | AT3G14100 | 60.645 | 155 | 47 | 4 | 9 | 151 | 275 | 427 | 1.51e-47 | 159 |
| MsG0880047328.01.T01 | AT1G17370 | 58.710 | 155 | 47 | 5 | 9 | 151 | 267 | 416 | 8.81e-44 | 149 |
| MsG0880047328.01.T01 | AT1G17370 | 58.710 | 155 | 47 | 5 | 9 | 151 | 270 | 419 | 8.83e-44 | 149 |
| MsG0880047328.01.T01 | AT1G54080 | 59.333 | 150 | 52 | 5 | 9 | 151 | 279 | 426 | 7.12e-42 | 144 |
| MsG0880047328.01.T01 | AT1G54080 | 59.333 | 150 | 52 | 5 | 9 | 151 | 283 | 430 | 7.71e-42 | 144 |
Find 73 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTACTACATTTAAATA+AGG | 0.191590 | 8:-84736477 | MsG0880047328.01.T01:three_prime_UTR |
| GCCATGGGAATGGGTGCTCT+TGG | 0.248648 | 8:-84736732 | MsG0880047328.01.T01:CDS |
| CCATGGGAATGGGTGCTCTT+GGG | 0.253064 | 8:-84736731 | MsG0880047328.01.T01:CDS |
| GTGCTCTTGGGGCTGGGTAC+GGG | 0.261923 | 8:-84736719 | MsG0880047328.01.T01:CDS |
| TCCCATGGCTGCCCGCTTTA+CGG | 0.262872 | 8:+84736746 | None:intergenic |
| GGAATGGGTGCTCTTGGGGC+TGG | 0.265291 | 8:-84736726 | MsG0880047328.01.T01:CDS |
| GTGCAACGAGACAAAAGTTT+TGG | 0.288822 | 8:-84737340 | MsG0880047328.01.T01:CDS |
| GGTGCTCTTGGGGCTGGGTA+CGG | 0.320968 | 8:-84736720 | MsG0880047328.01.T01:CDS |
| TGCTGAGTGGTGGCAACATT+AGG | 0.328886 | 8:+84736687 | None:intergenic |
| ATAAACACATCCTTTGTCAT+AGG | 0.331362 | 8:+84736633 | None:intergenic |
| TTGGAACTATTGAAGATGTT+AGG | 0.337285 | 8:-84737363 | MsG0880047328.01.T01:CDS |
| AGAGGAGTAGAGGCTGTTCC+TGG | 0.344903 | 8:+84736873 | None:intergenic |
| TGCTCTTGGGGCTGGGTACG+GGG | 0.349762 | 8:-84736718 | MsG0880047328.01.T01:CDS |
| GGCAATGCTCGGTTTCTGTT+TGG | 0.367861 | 8:-84737268 | MsG0880047328.01.T01:CDS |
| AGTTGGCCATTTACCTTGAT+AGG | 0.368076 | 8:+84737241 | None:intergenic |
| CATGGGAATGGGTGCTCTTG+GGG | 0.379768 | 8:-84736730 | MsG0880047328.01.T01:CDS |
| CTTGGGGCTGGGTACGGGGC+AGG | 0.383014 | 8:-84736714 | MsG0880047328.01.T01:CDS |
| GTATTACTACATTTAAATAA+GGG | 0.383143 | 8:-84736476 | MsG0880047328.01.T01:three_prime_UTR |
| GAATGGGTGCTCTTGGGGCT+GGG | 0.388523 | 8:-84736725 | MsG0880047328.01.T01:CDS |
| GCTGAGTGGTGGCAACATTA+GGG | 0.418535 | 8:+84736688 | None:intergenic |
| TCTGTTTGGCAAACCTATCA+AGG | 0.428539 | 8:-84737254 | MsG0880047328.01.T01:intron |
| TGCCGTAAAGCGGGCAGCCA+TGG | 0.435035 | 8:-84736748 | MsG0880047328.01.T01:CDS |
| CATCCTTTGTCATAGGGGAT+TGG | 0.468207 | 8:+84736640 | None:intergenic |
| TCTACGCATGTACCAGTGCC+AGG | 0.473075 | 8:-84736837 | MsG0880047328.01.T01:CDS |
| AAGCGGGCAGCCATGGGAAT+GGG | 0.480383 | 8:-84736741 | MsG0880047328.01.T01:CDS |
| TCATTATATATTACTGAGCC+AGG | 0.481347 | 8:-84736391 | MsG0880047328.01.T01:three_prime_UTR |
| AAAGCGGGCAGCCATGGGAA+TGG | 0.483227 | 8:-84736742 | MsG0880047328.01.T01:CDS |
| CAGCCCTAAAAGAGTGCCCT+GGG | 0.490595 | 8:+84736436 | None:intergenic |
| AGTTTATTGAGCCGCTAGAA+TGG | 0.497991 | 8:-84736600 | MsG0880047328.01.T01:three_prime_UTR |
| TAAACACATCCTTTGTCATA+GGG | 0.505368 | 8:+84736634 | None:intergenic |
| GGTAGCAAGCCTACTCCTCC+AGG | 0.506780 | 8:-84736891 | MsG0880047328.01.T01:CDS |
| GAGGCTGTTCCTGGAGGAGT+AGG | 0.509965 | 8:+84736882 | None:intergenic |
| ACAGCCCTAAAAGAGTGCCC+TGG | 0.517590 | 8:+84736435 | None:intergenic |
| TGAGGCACATGCCGTAAAGC+GGG | 0.519673 | 8:-84736757 | MsG0880047328.01.T01:CDS |
| ATAGAAAATAGTACAACAAA+GGG | 0.520818 | 8:+84736543 | None:intergenic |
| TAGCAAGAGCTGCTTCATCA+TGG | 0.522638 | 8:+84737299 | None:intergenic |
| GTAGAAGCTGGTGGTGGAAG+AGG | 0.523058 | 8:+84736855 | None:intergenic |
| TCATACAATGCAAGACCGGC+AGG | 0.531526 | 8:+84736807 | None:intergenic |
| GGCTTTGAGCAAAATGAATG+AGG | 0.532599 | 8:-84736775 | MsG0880047328.01.T01:CDS |
| GCCGTAAAGCGGGCAGCCAT+GGG | 0.532748 | 8:-84736747 | MsG0880047328.01.T01:CDS |
| GCAGGTGAAAACCCTGGCAC+TGG | 0.532863 | 8:+84736825 | None:intergenic |
| CTATACAGATGGGCAATGCT+CGG | 0.533465 | 8:-84737279 | MsG0880047328.01.T01:CDS |
| CGAGGGCATGAAAATGATGA+TGG | 0.536381 | 8:+84737389 | None:intergenic |
| AAGCATAAAGAAACTACAAA+AGG | 0.536917 | 8:+84736508 | None:intergenic |
| TGGAACTATTGAAGATGTTA+GGG | 0.538403 | 8:-84737362 | MsG0880047328.01.T01:CDS |
| CCCAAGAGCACCCATTCCCA+TGG | 0.540481 | 8:+84736731 | None:intergenic |
| AGCAGCTCTTGCTATACAGA+TGG | 0.541414 | 8:-84737290 | MsG0880047328.01.T01:CDS |
| TATCCAATCCCCTATGACAA+AGG | 0.552526 | 8:-84736643 | MsG0880047328.01.T01:three_prime_UTR |
| AGCAAGAGCTGCTTCATCAT+GGG | 0.567673 | 8:+84737300 | None:intergenic |
| TGCATTGTATGAACGCCAGT+TGG | 0.572674 | 8:-84736796 | MsG0880047328.01.T01:CDS |
| AATAGAAAATAGTACAACAA+AGG | 0.576697 | 8:+84736542 | None:intergenic |
| GAAAATAGTACAACAAAGGG+AGG | 0.580082 | 8:+84736546 | None:intergenic |
| GCGTTCATACAATGCAAGAC+CGG | 0.582208 | 8:+84736803 | None:intergenic |
| TGGTGGTGGAAGAGGAGTAG+AGG | 0.594572 | 8:+84736863 | None:intergenic |
| GCAGCTCTTGCTATACAGAT+GGG | 0.603103 | 8:-84737289 | MsG0880047328.01.T01:CDS |
| CTACGCATGTACCAGTGCCA+GGG | 0.604450 | 8:-84736836 | MsG0880047328.01.T01:CDS |
| ACTGGTACATGCGTAGAAGC+TGG | 0.610837 | 8:+84736843 | None:intergenic |
| ATGAGGCACATGCCGTAAAG+CGG | 0.612710 | 8:-84736758 | MsG0880047328.01.T01:CDS |
| ACATGCGTAGAAGCTGGTGG+TGG | 0.621131 | 8:+84736849 | None:intergenic |
| AAACACATCCTTTGTCATAG+GGG | 0.623129 | 8:+84736635 | None:intergenic |
| GTACATTAGGTGCTGAGTGG+TGG | 0.623532 | 8:+84736677 | None:intergenic |
| TTCAATAGTTCCAACACCGA+GGG | 0.628747 | 8:+84737372 | None:intergenic |
| ATAGTACAACAAAGGGAGGG+TGG | 0.632298 | 8:+84736550 | None:intergenic |
| ATCATGGTCTGTGAAATCGC+AGG | 0.646072 | 8:-84737428 | MsG0880047328.01.T01:CDS |
| AGACCGGCAGGTGAAAACCC+TGG | 0.653386 | 8:+84736819 | None:intergenic |
| AAAATAGTACAACAAAGGGA+GGG | 0.662308 | 8:+84736547 | None:intergenic |
| GGAGTAGAGGCTGTTCCTGG+AGG | 0.669202 | 8:+84736876 | None:intergenic |
| GCCCTAAAAGAGTGCCCTGG+GGG | 0.684238 | 8:+84736438 | None:intergenic |
| GTATTGTAAAACCATTCTAG+CGG | 0.692949 | 8:+84736589 | None:intergenic |
| CTTCAATAGTTCCAACACCG+AGG | 0.694923 | 8:+84737371 | None:intergenic |
| AGCCCTAAAAGAGTGCCCTG+GGG | 0.725713 | 8:+84736437 | None:intergenic |
| GTAGTACATTAGGTGCTGAG+TGG | 0.731282 | 8:+84736674 | None:intergenic |
| GGTACATGCGTAGAAGCTGG+TGG | 0.755423 | 8:+84736846 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGAAGCTTATTATATA+TGG | + | Chr8:84736840-84736859 | None:intergenic | 15.0% |
| !! | GTATTACTACATTTAAATAA+GGG | - | Chr8:84737346-84737365 | MsG0880047328.01.T01:CDS | 15.0% |
| !! | TGTATTACTACATTTAAATA+AGG | - | Chr8:84737345-84737364 | MsG0880047328.01.T01:CDS | 15.0% |
| !! | AATAGAAAATAGTACAACAA+AGG | + | Chr8:84737283-84737302 | None:intergenic | 20.0% |
| !! | ATAGAAAATAGTACAACAAA+GGG | + | Chr8:84737282-84737301 | None:intergenic | 20.0% |
| ! | AAGCATAAAGAAACTACAAA+AGG | + | Chr8:84737317-84737336 | None:intergenic | 25.0% |
| ! | ATAAGCTTCATAATACTCAA+AGG | - | Chr8:84736846-84736865 | MsG0880047328.01.T01:CDS | 25.0% |
| !! | TATTTTACTGGTAGTACATT+AGG | + | Chr8:84737161-84737180 | None:intergenic | 25.0% |
| !! | TCTGTAATTTTCAAAGACAA+AGG | - | Chr8:84736739-84736758 | MsG0880047328.01.T01:CDS | 25.0% |
| AAAATAGTACAACAAAGGGA+GGG | + | Chr8:84737278-84737297 | None:intergenic | 30.0% | |
| AAGCTTATTATATATGGTCG+AGG | + | Chr8:84736834-84736853 | None:intergenic | 30.0% | |
| ATAAACACATCCTTTGTCAT+AGG | + | Chr8:84737192-84737211 | None:intergenic | 30.0% | |
| CCAGAAAAAATGTTGTATCA+AGG | - | Chr8:84736705-84736724 | MsG0880047328.01.T01:CDS | 30.0% | |
| CTCTAGATAAAAAGCCAAAA+AGG | + | Chr8:84736677-84736696 | None:intergenic | 30.0% | |
| GTATTGTAAAACCATTCTAG+CGG | + | Chr8:84737236-84737255 | None:intergenic | 30.0% | |
| TAAACACATCCTTTGTCATA+GGG | + | Chr8:84737191-84737210 | None:intergenic | 30.0% | |
| TCATTATATATTACTGAGCC+AGG | - | Chr8:84737431-84737450 | MsG0880047328.01.T01:CDS | 30.0% | |
| TGGAACTATTGAAGATGTTA+GGG | - | Chr8:84736460-84736479 | MsG0880047328.01.T01:three_prime_UTR | 30.0% | |
| TTGGAACTATTGAAGATGTT+AGG | - | Chr8:84736459-84736478 | MsG0880047328.01.T01:three_prime_UTR | 30.0% | |
| ! | TGATATCTGTCTATCCTTTT+TGG | - | Chr8:84736660-84736679 | MsG0880047328.01.T01:exon | 30.0% |
| ! | TGATATTTTGCAGTGTTCAT+GGG | - | Chr8:84736909-84736928 | MsG0880047328.01.T01:intron | 30.0% |
| ! | TTGATATTTTGCAGTGTTCA+TGG | - | Chr8:84736908-84736927 | MsG0880047328.01.T01:intron | 30.0% |
| !!! | CCTTGATACAACATTTTTTC+TGG | + | Chr8:84736708-84736727 | None:intergenic | 30.0% |
| !!! | CTTTTTGGCTTTTTATCTAG+AGG | - | Chr8:84736675-84736694 | MsG0880047328.01.T01:CDS | 30.0% |
| AAACACATCCTTTGTCATAG+GGG | + | Chr8:84737190-84737209 | None:intergenic | 35.0% | |
| ATTATAAATACCCTGCCAGT+TGG | + | Chr8:84736601-84736620 | None:intergenic | 35.0% | |
| GAAAATAGTACAACAAAGGG+AGG | + | Chr8:84737279-84737298 | None:intergenic | 35.0% | |
| ! | GATATTTTGCAGTGTTCATG+GGG | - | Chr8:84736910-84736929 | MsG0880047328.01.T01:intron | 35.0% |
| ! | TAGGGGATTGGATATTTTAC+TGG | + | Chr8:84737173-84737192 | None:intergenic | 35.0% |
| ! | TGCAACGAGACAAAAGTTTT+GGG | - | Chr8:84736483-84736502 | MsG0880047328.01.T01:three_prime_UTR | 35.0% |
| AGTTGGCCATTTACCTTGAT+AGG | + | Chr8:84736584-84736603 | None:intergenic | 40.0% | |
| AGTTTATTGAGCCGCTAGAA+TGG | - | Chr8:84737222-84737241 | MsG0880047328.01.T01:intron | 40.0% | |
| GGCAAACCTATCAAGGTAAA+TGG | - | Chr8:84736575-84736594 | MsG0880047328.01.T01:three_prime_UTR | 40.0% | |
| TATCAAGGTAAATGGCCAAC+TGG | - | Chr8:84736583-84736602 | MsG0880047328.01.T01:three_prime_UTR | 40.0% | |
| TATCCAATCCCCTATGACAA+AGG | - | Chr8:84737179-84737198 | MsG0880047328.01.T01:intron | 40.0% | |
| TCTGTTTGGCAAACCTATCA+AGG | - | Chr8:84736568-84736587 | MsG0880047328.01.T01:three_prime_UTR | 40.0% | |
| TTCAATAGTTCCAACACCGA+GGG | + | Chr8:84736453-84736472 | None:intergenic | 40.0% | |
| ! | CATCATCATTTTCATGCCCT+CGG | - | Chr8:84736434-84736453 | MsG0880047328.01.T01:three_prime_UTR | 40.0% |
| ! | GTGCAACGAGACAAAAGTTT+TGG | - | Chr8:84736482-84736501 | MsG0880047328.01.T01:three_prime_UTR | 40.0% |
| ! | TCATTTTGCTCAAAGCCAAC+TGG | + | Chr8:84737044-84737063 | None:intergenic | 40.0% |
| !! | GGCTTTGAGCAAAATGAATG+AGG | - | Chr8:84737047-84737066 | MsG0880047328.01.T01:intron | 40.0% |
| AGCAAGAGCTGCTTCATCAT+GGG | + | Chr8:84736525-84736544 | None:intergenic | 45.0% | |
| ATAGTACAACAAAGGGAGGG+TGG | + | Chr8:84737275-84737294 | None:intergenic | 45.0% | |
| ATCATGGTCTGTGAAATCGC+AGG | - | Chr8:84736394-84736413 | MsG0880047328.01.T01:three_prime_UTR | 45.0% | |
| CATCCTTTGTCATAGGGGAT+TGG | + | Chr8:84737185-84737204 | None:intergenic | 45.0% | |
| CTATACAGATGGGCAATGCT+CGG | - | Chr8:84736543-84736562 | MsG0880047328.01.T01:three_prime_UTR | 45.0% | |
| CTTCAATAGTTCCAACACCG+AGG | + | Chr8:84736454-84736473 | None:intergenic | 45.0% | |
| GCGTTCATACAATGCAAGAC+CGG | + | Chr8:84737022-84737041 | None:intergenic | 45.0% | |
| TAGCAAGAGCTGCTTCATCA+TGG | + | Chr8:84736526-84736545 | None:intergenic | 45.0% | |
| TGCATTGTATGAACGCCAGT+TGG | - | Chr8:84737026-84737045 | MsG0880047328.01.T01:intron | 45.0% | |
| ! | AGCAGCTCTTGCTATACAGA+TGG | - | Chr8:84736532-84736551 | MsG0880047328.01.T01:three_prime_UTR | 45.0% |
| ! | CGAGGGCATGAAAATGATGA+TGG | + | Chr8:84736436-84736455 | None:intergenic | 45.0% |
| ! | GCAGCTCTTGCTATACAGAT+GGG | - | Chr8:84736533-84736552 | MsG0880047328.01.T01:three_prime_UTR | 45.0% |
| !! | AAATGTTAAAGAGTGCCCCC+AGG | - | Chr8:84737369-84737388 | MsG0880047328.01.T01:CDS | 45.0% |
| !! | AATGTTAAAGAGTGCCCCCA+GGG | - | Chr8:84737370-84737389 | MsG0880047328.01.T01:CDS | 45.0% |
| !! | GTAGTACATTAGGTGCTGAG+TGG | + | Chr8:84737151-84737170 | None:intergenic | 45.0% |
| !!! | CACTCTTTTAGGGCTGTAAG+TGG | - | Chr8:84737393-84737412 | MsG0880047328.01.T01:CDS | 45.0% |
| AAGGTAAATGGCCAACTGGC+AGG | - | Chr8:84736587-84736606 | MsG0880047328.01.T01:three_prime_UTR | 50.0% | |
| ACTGGTACATGCGTAGAAGC+TGG | + | Chr8:84736982-84737001 | None:intergenic | 50.0% | |
| AGGTAAATGGCCAACTGGCA+GGG | - | Chr8:84736588-84736607 | MsG0880047328.01.T01:three_prime_UTR | 50.0% | |
| ATGAGGCACATGCCGTAAAG+CGG | - | Chr8:84737064-84737083 | MsG0880047328.01.T01:intron | 50.0% | |
| GCTGAGTGGTGGCAACATTA+GGG | + | Chr8:84737137-84737156 | None:intergenic | 50.0% | |
| GGCAATGCTCGGTTTCTGTT+TGG | - | Chr8:84736554-84736573 | MsG0880047328.01.T01:three_prime_UTR | 50.0% | |
| TCATACAATGCAAGACCGGC+AGG | + | Chr8:84737018-84737037 | None:intergenic | 50.0% | |
| TGCTGAGTGGTGGCAACATT+AGG | + | Chr8:84737138-84737157 | None:intergenic | 50.0% | |
| !! | CATTTTCATGCCCTCGGTGT+TGG | - | Chr8:84736440-84736459 | MsG0880047328.01.T01:three_prime_UTR | 50.0% |
| !! | GTACATTAGGTGCTGAGTGG+TGG | + | Chr8:84737148-84737167 | None:intergenic | 50.0% |
| ACATGCGTAGAAGCTGGTGG+TGG | + | Chr8:84736976-84736995 | None:intergenic | 55.0% | |
| AGAGGAGTAGAGGCTGTTCC+TGG | + | Chr8:84736952-84736971 | None:intergenic | 55.0% | |
| CATGGGAATGGGTGCTCTTG+GGG | - | Chr8:84737092-84737111 | MsG0880047328.01.T01:intron | 55.0% | |
| CCATGGGAATGGGTGCTCTT+GGG | - | Chr8:84737091-84737110 | MsG0880047328.01.T01:intron | 55.0% | |
| CTACGCATGTACCAGTGCCA+GGG | - | Chr8:84736986-84737005 | MsG0880047328.01.T01:intron | 55.0% | |
| GGTACATGCGTAGAAGCTGG+TGG | + | Chr8:84736979-84736998 | None:intergenic | 55.0% | |
| TCTACGCATGTACCAGTGCC+AGG | - | Chr8:84736985-84737004 | MsG0880047328.01.T01:intron | 55.0% | |
| TGAGGCACATGCCGTAAAGC+GGG | - | Chr8:84737065-84737084 | MsG0880047328.01.T01:intron | 55.0% | |
| !! | ACAGCCCTAAAAGAGTGCCC+TGG | + | Chr8:84737390-84737409 | None:intergenic | 55.0% |
| !! | AGCCCTAAAAGAGTGCCCTG+GGG | + | Chr8:84737388-84737407 | None:intergenic | 55.0% |
| !! | CAGCCCTAAAAGAGTGCCCT+GGG | + | Chr8:84737389-84737408 | None:intergenic | 55.0% |
| !! | GTAGAAGCTGGTGGTGGAAG+AGG | + | Chr8:84736970-84736989 | None:intergenic | 55.0% |
| !! | TGGTGGTGGAAGAGGAGTAG+AGG | + | Chr8:84736962-84736981 | None:intergenic | 55.0% |
| AAAGCGGGCAGCCATGGGAA+TGG | - | Chr8:84737080-84737099 | MsG0880047328.01.T01:intron | 60.0% | |
| AAGCGGGCAGCCATGGGAAT+GGG | - | Chr8:84737081-84737100 | MsG0880047328.01.T01:intron | 60.0% | |
| AGACCGGCAGGTGAAAACCC+TGG | + | Chr8:84737006-84737025 | None:intergenic | 60.0% | |
| GAATGGGTGCTCTTGGGGCT+GGG | - | Chr8:84737097-84737116 | MsG0880047328.01.T01:intron | 60.0% | |
| GAGGCTGTTCCTGGAGGAGT+AGG | + | Chr8:84736943-84736962 | None:intergenic | 60.0% | |
| GCAGGTGAAAACCCTGGCAC+TGG | + | Chr8:84737000-84737019 | None:intergenic | 60.0% | |
| GCCATGGGAATGGGTGCTCT+TGG | - | Chr8:84737090-84737109 | MsG0880047328.01.T01:intron | 60.0% | |
| GGAGTAGAGGCTGTTCCTGG+AGG | + | Chr8:84736949-84736968 | None:intergenic | 60.0% | |
| GGTAGCAAGCCTACTCCTCC+AGG | - | Chr8:84736931-84736950 | MsG0880047328.01.T01:intron | 60.0% | |
| TCCCATGGCTGCCCGCTTTA+CGG | + | Chr8:84737079-84737098 | None:intergenic | 60.0% | |
| ! | GTGCCAGGGTTTTCACCTGC+CGG | - | Chr8:84737000-84737019 | MsG0880047328.01.T01:intron | 60.0% |
| !! | CCCAAGAGCACCCATTCCCA+TGG | + | Chr8:84737094-84737113 | None:intergenic | 60.0% |
| !! | GCCCCCAGGGCACTCTTTTA+GGG | - | Chr8:84737383-84737402 | MsG0880047328.01.T01:CDS | 60.0% |
| !! | GCCCTAAAAGAGTGCCCTGG+GGG | + | Chr8:84737387-84737406 | None:intergenic | 60.0% |
| !! | TGCCCCCAGGGCACTCTTTT+AGG | - | Chr8:84737382-84737401 | MsG0880047328.01.T01:CDS | 60.0% |
| GCCGTAAAGCGGGCAGCCAT+GGG | - | Chr8:84737075-84737094 | MsG0880047328.01.T01:intron | 65.0% | |
| GGAATGGGTGCTCTTGGGGC+TGG | - | Chr8:84737096-84737115 | MsG0880047328.01.T01:intron | 65.0% | |
| GGTGCTCTTGGGGCTGGGTA+CGG | - | Chr8:84737102-84737121 | MsG0880047328.01.T01:intron | 65.0% | |
| GTGCTCTTGGGGCTGGGTAC+GGG | - | Chr8:84737103-84737122 | MsG0880047328.01.T01:intron | 65.0% | |
| TGCCGTAAAGCGGGCAGCCA+TGG | - | Chr8:84737074-84737093 | MsG0880047328.01.T01:intron | 65.0% | |
| TGCTCTTGGGGCTGGGTACG+GGG | - | Chr8:84737104-84737123 | MsG0880047328.01.T01:intron | 65.0% | |
| CTTGGGGCTGGGTACGGGGC+AGG | - | Chr8:84737108-84737127 | MsG0880047328.01.T01:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 84736389 | 84737455 | 84736389 | ID=MsG0880047328.01;Name=MsG0880047328.01 |
| Chr8 | mRNA | 84736389 | 84737455 | 84736389 | ID=MsG0880047328.01.T01;Parent=MsG0880047328.01;Name=MsG0880047328.01.T01;_AED=0.49;_eAED=0.50;_QI=0|1|0.5|1|1|1|2|279|151 |
| Chr8 | exon | 84736389 | 84736922 | 84736389 | ID=MsG0880047328.01.T01:exon:1600;Parent=MsG0880047328.01.T01 |
| Chr8 | exon | 84737255 | 84737455 | 84737255 | ID=MsG0880047328.01.T01:exon:1599;Parent=MsG0880047328.01.T01 |
| Chr8 | CDS | 84737255 | 84737455 | 84737255 | ID=MsG0880047328.01.T01:cds;Parent=MsG0880047328.01.T01 |
| Chr8 | CDS | 84736668 | 84736922 | 84736668 | ID=MsG0880047328.01.T01:cds;Parent=MsG0880047328.01.T01 |
| Chr8 | three_prime_UTR | 84736389 | 84736667 | 84736389 | ID=MsG0880047328.01.T01:three_prime_utr;Parent=MsG0880047328.01.T01 |
| Gene Sequence |
| Protein sequence |
