Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036247.01.T01 | XP_003610912.2 | 87.755 | 49 | 6 | 0 | 18 | 66 | 628 | 676 | 7.92E-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036247.01.T01 | G7K7W5 | 87.755 | 49 | 6 | 0 | 18 | 66 | 628 | 676 | 3.78e-16 | 81.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048197.01 | MsG0780036247.01 | -0.812264 | 4.628096e-51 | 2.928914e-48 |
| MsG0080048968.01 | MsG0780036247.01 | -0.837410 | 5.283153e-57 | 6.856407e-54 |
| MsG0180000153.01 | MsG0780036247.01 | -0.803385 | 3.575229e-49 | 1.794157e-46 |
| MsG0180000611.01 | MsG0780036247.01 | -0.807940 | 3.953398e-50 | 2.230938e-47 |
| MsG0180000799.01 | MsG0780036247.01 | -0.801275 | 9.721776e-49 | 4.623774e-46 |
| MsG0180001043.01 | MsG0780036247.01 | -0.816742 | 4.726456e-52 | 3.377050e-49 |
| MsG0180001599.01 | MsG0780036247.01 | -0.811071 | 8.408011e-51 | 5.154544e-48 |
| MsG0180001922.01 | MsG0780036247.01 | -0.824184 | 9.263238e-54 | 8.145663e-51 |
| MsG0180002140.01 | MsG0780036247.01 | -0.840636 | 7.717845e-58 | 1.106078e-54 |
| MsG0180002300.01 | MsG0780036247.01 | -0.824640 | 7.235504e-54 | 6.447027e-51 |
| MsG0180002489.01 | MsG0780036247.01 | -0.817088 | 3.953488e-52 | 2.851612e-49 |
| MsG0180002491.01 | MsG0780036247.01 | -0.824464 | 7.956711e-54 | 7.052667e-51 |
| MsG0180003088.01 | MsG0780036247.01 | -0.807710 | 4.425572e-50 | 2.482436e-47 |
| MsG0180003190.01 | MsG0780036247.01 | -0.806560 | 7.752352e-50 | 4.220998e-47 |
| MsG0180003303.01 | MsG0780036247.01 | -0.824706 | 6.978932e-54 | 6.230426e-51 |
| MsG0180003379.01 | MsG0780036247.01 | -0.825826 | 3.792962e-54 | 3.495708e-51 |
| MsG0180003744.01 | MsG0780036247.01 | -0.845489 | 3.935060e-59 | 6.568168e-56 |
| MsG0180004016.01 | MsG0780036247.01 | -0.859344 | 4.414285e-63 | 1.162146e-59 |
| MsG0180004128.01 | MsG0780036247.01 | -0.816248 | 6.099376e-52 | 4.299566e-49 |
| MsG0180004444.01 | MsG0780036247.01 | -0.802945 | 4.408326e-49 | 2.187442e-46 |
| MsG0180004598.01 | MsG0780036247.01 | -0.808068 | 3.714489e-50 | 2.103221e-47 |
| MsG0180004645.01 | MsG0780036247.01 | -0.811976 | 5.347993e-51 | 3.358021e-48 |
| MsG0180004767.01 | MsG0780036247.01 | -0.835529 | 1.591615e-56 | 1.951509e-53 |
| MsG0180004991.01 | MsG0780036247.01 | -0.801988 | 6.942839e-49 | 3.362085e-46 |
| MsG0180005106.01 | MsG0780036247.01 | -0.842992 | 1.842147e-58 | 2.841621e-55 |
| MsG0180005125.01 | MsG0780036247.01 | -0.820030 | 8.506953e-53 | 6.655880e-50 |
| MsG0180005268.01 | MsG0780036247.01 | -0.814913 | 1.209384e-51 | 8.218946e-49 |
| MsG0180005765.01 | MsG0780036247.01 | -0.816269 | 6.032509e-52 | 4.254994e-49 |
| MsG0180005944.01 | MsG0780036247.01 | -0.802923 | 4.456134e-49 | 2.209936e-46 |
| MsG0180006016.01 | MsG0780036247.01 | -0.819502 | 1.122903e-52 | 8.656728e-50 |
| MsG0180006050.01 | MsG0780036247.01 | -0.838562 | 2.672140e-57 | 3.592536e-54 |
| MsG0280006368.01 | MsG0780036247.01 | -0.816863 | 4.440291e-52 | 3.183213e-49 |
| MsG0280006411.01 | MsG0780036247.01 | -0.832715 | 8.069226e-56 | 9.094269e-53 |
| MsG0280010784.01 | MsG0780036247.01 | -0.803226 | 3.856438e-49 | 1.927377e-46 |
| MsG0280010901.01 | MsG0780036247.01 | -0.807299 | 5.408703e-50 | 3.001777e-47 |
| MsG0280011235.01 | MsG0780036247.01 | -0.810024 | 1.416041e-50 | 8.443867e-48 |
| MsG0280011287.01 | MsG0780036247.01 | -0.826698 | 2.351627e-54 | 2.221769e-51 |
| MsG0380011729.01 | MsG0780036247.01 | -0.823118 | 1.645111e-53 | 1.403826e-50 |
| MsG0380012458.01 | MsG0780036247.01 | -0.804782 | 1.831403e-49 | 9.527273e-47 |
| MsG0380013181.01 | MsG0780036247.01 | 0.822138 | 2.780381e-53 | 2.307337e-50 |
| MsG0380014162.01 | MsG0780036247.01 | 0.808254 | 3.389950e-50 | 1.929022e-47 |
| MsG0380014330.01 | MsG0780036247.01 | -0.811690 | 6.172072e-51 | 3.845838e-48 |
| MsG0380014908.01 | MsG0780036247.01 | -0.812045 | 5.166050e-51 | 3.249667e-48 |
| MsG0680030841.01 | MsG0780036247.01 | -0.822419 | 2.393170e-53 | 2.002073e-50 |
| MsG0680031051.01 | MsG0780036247.01 | -0.815139 | 1.077297e-51 | 7.366318e-49 |
| MsG0680031536.01 | MsG0780036247.01 | -0.835586 | 1.539875e-56 | 1.891303e-53 |
| MsG0680031538.01 | MsG0780036247.01 | -0.821871 | 3.206013e-53 | 2.640442e-50 |
| MsG0680031654.01 | MsG0780036247.01 | -0.811503 | 6.775685e-51 | 4.201603e-48 |
| MsG0680031805.01 | MsG0780036247.01 | 0.804018 | 2.641415e-49 | 1.347350e-46 |
| MsG0680032510.01 | MsG0780036247.01 | 0.821100 | 4.830212e-53 | 3.893070e-50 |
| MsG0680034061.01 | MsG0780036247.01 | -0.812311 | 4.519828e-51 | 2.863982e-48 |
| MsG0680034190.01 | MsG0780036247.01 | -0.804410 | 2.189265e-49 | 1.127946e-46 |
| MsG0680035582.01 | MsG0780036247.01 | -0.818472 | 1.925716e-52 | 1.442901e-49 |
| MsG0480018462.01 | MsG0780036247.01 | -0.802516 | 5.406505e-49 | 2.653524e-46 |
| MsG0480018906.01 | MsG0780036247.01 | -0.818949 | 1.500993e-52 | 1.139636e-49 |
| MsG0480019289.01 | MsG0780036247.01 | -0.827637 | 1.401388e-54 | 1.360647e-51 |
| MsG0480019642.01 | MsG0780036247.01 | -0.802300 | 5.989055e-49 | 2.923599e-46 |
| MsG0480019984.01 | MsG0780036247.01 | 0.806751 | 7.063524e-50 | 3.864755e-47 |
| MsG0480020372.01 | MsG0780036247.01 | -0.814265 | 1.682099e-51 | 1.123411e-48 |
| MsG0480020416.01 | MsG0780036247.01 | -0.822491 | 2.302725e-53 | 1.930295e-50 |
| MsG0480020445.01 | MsG0780036247.01 | -0.803652 | 3.147337e-49 | 1.590298e-46 |
| MsG0480020843.01 | MsG0780036247.01 | -0.830434 | 2.942886e-55 | 3.100147e-52 |
| MsG0480021034.01 | MsG0780036247.01 | -0.810365 | 1.195344e-50 | 7.191395e-48 |
| MsG0480021240.01 | MsG0780036247.01 | -0.818917 | 1.526465e-52 | 1.157925e-49 |
| MsG0480021904.01 | MsG0780036247.01 | -0.800855 | 1.185074e-48 | 5.576827e-46 |
| MsG0480022393.01 | MsG0780036247.01 | 0.815924 | 7.204160e-52 | 5.033268e-49 |
| MsG0480022678.01 | MsG0780036247.01 | -0.827457 | 1.548186e-54 | 1.495531e-51 |
| MsG0480023136.01 | MsG0780036247.01 | 0.850633 | 1.496367e-60 | 2.949895e-57 |
| MsG0480023412.01 | MsG0780036247.01 | -0.813141 | 2.974845e-51 | 1.926911e-48 |
| MsG0480023415.01 | MsG0780036247.01 | -0.830362 | 3.064248e-55 | 3.221490e-52 |
| MsG0480023517.01 | MsG0780036247.01 | -0.828733 | 7.631361e-55 | 7.649776e-52 |
| MsG0480023841.01 | MsG0780036247.01 | 0.838205 | 3.301929e-57 | 4.391055e-54 |
| MsG0580024191.01 | MsG0780036247.01 | -0.802068 | 6.686920e-49 | 3.244807e-46 |
| MsG0580024458.01 | MsG0780036247.01 | 0.816209 | 6.223199e-52 | 4.382249e-49 |
| MsG0580024581.01 | MsG0780036247.01 | -0.813608 | 2.348811e-51 | 1.540976e-48 |
| MsG0580025026.01 | MsG0780036247.01 | -0.812490 | 4.130999e-51 | 2.630237e-48 |
| MsG0580025134.01 | MsG0780036247.01 | -0.822670 | 2.092459e-53 | 1.763010e-50 |
| MsG0580025278.01 | MsG0780036247.01 | -0.817807 | 2.722562e-52 | 2.002959e-49 |
| MsG0580025328.01 | MsG0780036247.01 | -0.801471 | 8.865577e-49 | 4.237377e-46 |
| MsG0580025400.01 | MsG0780036247.01 | -0.810065 | 1.387314e-50 | 8.281311e-48 |
| MsG0580025421.01 | MsG0780036247.01 | -0.812857 | 3.432258e-51 | 2.206384e-48 |
| MsG0580025453.01 | MsG0780036247.01 | -0.815832 | 7.552152e-52 | 5.263155e-49 |
| MsG0580025497.01 | MsG0780036247.01 | -0.806006 | 1.014368e-49 | 5.445613e-47 |
| MsG0380015598.01 | MsG0780036247.01 | 0.803823 | 2.900053e-49 | 1.471849e-46 |
| MsG0380015607.01 | MsG0780036247.01 | -0.832315 | 1.014185e-55 | 1.129284e-52 |
| MsG0380015818.01 | MsG0780036247.01 | -0.816123 | 6.503580e-52 | 4.568812e-49 |
| MsG0380016117.01 | MsG0780036247.01 | -0.833687 | 4.620626e-56 | 5.360779e-53 |
| MsG0380016342.01 | MsG0780036247.01 | 0.846523 | 2.059568e-59 | 3.554838e-56 |
| MsG0380017003.01 | MsG0780036247.01 | -0.835704 | 1.437254e-56 | 1.771715e-53 |
| MsG0380017210.01 | MsG0780036247.01 | -0.820496 | 6.652374e-53 | 5.272040e-50 |
| MsG0380017226.01 | MsG0780036247.01 | -0.814837 | 1.257371e-51 | 8.527916e-49 |
| MsG0380017229.01 | MsG0780036247.01 | -0.809867 | 1.530194e-50 | 9.086897e-48 |
| MsG0380017279.01 | MsG0780036247.01 | -0.821879 | 3.193125e-53 | 2.630432e-50 |
| MsG0380017476.01 | MsG0780036247.01 | -0.817987 | 2.479306e-52 | 1.832896e-49 |
| MsG0380017512.01 | MsG0780036247.01 | -0.804012 | 2.649391e-49 | 1.351190e-46 |
| MsG0380017914.01 | MsG0780036247.01 | 0.818026 | 2.429440e-52 | 1.797944e-49 |
| MsG0480018292.01 | MsG0780036247.01 | -0.805059 | 1.602911e-49 | 8.398065e-47 |
| MsG0480018321.01 | MsG0780036247.01 | -0.803789 | 2.947598e-49 | 1.494687e-46 |
| MsG0480018332.01 | MsG0780036247.01 | -0.828991 | 6.607816e-55 | 6.673920e-52 |
| MsG0580026225.01 | MsG0780036247.01 | -0.820878 | 5.433541e-53 | 4.352374e-50 |
| MsG0580027034.01 | MsG0780036247.01 | -0.810001 | 1.432049e-50 | 8.534250e-48 |
| MsG0580027319.01 | MsG0780036247.01 | 0.814134 | 1.797941e-51 | 1.196512e-48 |
| MsG0580028072.01 | MsG0780036247.01 | -0.802773 | 4.784390e-49 | 2.363846e-46 |
| MsG0580028664.01 | MsG0780036247.01 | 0.823702 | 1.201154e-53 | 1.042167e-50 |
| MsG0580029283.01 | MsG0780036247.01 | -0.837492 | 5.034043e-57 | 6.550396e-54 |
| MsG0580029658.01 | MsG0780036247.01 | -0.841204 | 5.475867e-58 | 7.986982e-55 |
| MsG0580029783.01 | MsG0780036247.01 | -0.810378 | 1.187364e-50 | 7.145706e-48 |
| MsG0580029801.01 | MsG0780036247.01 | -0.814370 | 1.594930e-51 | 1.068229e-48 |
| MsG0580030003.01 | MsG0780036247.01 | -0.816098 | 6.588395e-52 | 4.625408e-49 |
| MsG0680030351.01 | MsG0780036247.01 | -0.800651 | 1.304318e-48 | 6.106206e-46 |
| MsG0680030684.01 | MsG0780036247.01 | -0.807929 | 3.975410e-50 | 2.242641e-47 |
| MsG0280006501.01 | MsG0780036247.01 | -0.803391 | 3.564672e-49 | 1.789143e-46 |
| MsG0280006519.01 | MsG0780036247.01 | -0.815563 | 8.669381e-52 | 5.997684e-49 |
| MsG0280006595.01 | MsG0780036247.01 | -0.823469 | 1.361824e-53 | 1.173581e-50 |
| MsG0280006682.01 | MsG0780036247.01 | -0.818215 | 2.201810e-52 | 1.637981e-49 |
| MsG0280006892.01 | MsG0780036247.01 | -0.817088 | 3.953488e-52 | 2.851612e-49 |
| MsG0280006935.01 | MsG0780036247.01 | -0.801749 | 7.774842e-49 | 3.742126e-46 |
| MsG0280007161.01 | MsG0780036247.01 | -0.825060 | 5.757751e-54 | 5.192135e-51 |
| MsG0280007585.01 | MsG0780036247.01 | -0.809469 | 1.863071e-50 | 1.094760e-47 |
| MsG0280007714.01 | MsG0780036247.01 | -0.802650 | 5.073587e-49 | 2.498674e-46 |
| MsG0280008286.01 | MsG0780036247.01 | -0.849753 | 2.640980e-60 | 5.058137e-57 |
| MsG0280008502.01 | MsG0780036247.01 | -0.812966 | 3.249795e-51 | 2.095122e-48 |
| MsG0280009554.01 | MsG0780036247.01 | -0.806402 | 8.369521e-50 | 4.538514e-47 |
| MsG0280010416.01 | MsG0780036247.01 | -0.805909 | 1.063136e-49 | 5.693057e-47 |
| MsG0280010423.01 | MsG0780036247.01 | 0.862966 | 3.484164e-64 | 1.039206e-60 |
| MsG0680035854.01 | MsG0780036247.01 | -0.842652 | 2.268506e-58 | 3.462311e-55 |
| MsG0780036240.01 | MsG0780036247.01 | -0.809780 | 1.597309e-50 | 9.464314e-48 |
| MsG0780036247.01 | MsG0780039340.01 | -0.838735 | 2.410152e-57 | 3.257521e-54 |
| MsG0780036247.01 | MsG0780039570.01 | -0.801466 | 8.887870e-49 | 4.247381e-46 |
| MsG0780036247.01 | MsG0780039587.01 | -0.815637 | 8.348414e-52 | 5.787587e-49 |
| MsG0780036247.01 | MsG0780039943.01 | -0.824997 | 5.958835e-54 | 5.363966e-51 |
| MsG0780036247.01 | MsG0780040125.01 | -0.841233 | 5.380669e-58 | 7.854853e-55 |
| MsG0780036247.01 | MsG0780040208.01 | -0.808560 | 2.916797e-50 | 1.673049e-47 |
| MsG0780036247.01 | MsG0780040338.01 | -0.800744 | 1.248446e-48 | 5.858260e-46 |
| MsG0780036247.01 | MsG0780040375.01 | 0.814457 | 1.525739e-51 | 1.024295e-48 |
| MsG0780036247.01 | MsG0780040424.01 | -0.809044 | 2.298774e-50 | 1.335527e-47 |
| MsG0780036247.01 | MsG0780040742.01 | -0.813012 | 3.174246e-51 | 2.049053e-48 |
| MsG0780036247.01 | MsG0780040845.01 | -0.800758 | 1.240345e-48 | 5.822224e-46 |
| MsG0780036247.01 | MsG0780040861.01 | -0.807046 | 6.119363e-50 | 3.373786e-47 |
| MsG0780036247.01 | MsG0780040929.01 | -0.808666 | 2.768971e-50 | 1.592614e-47 |
| MsG0780036247.01 | MsG0780041294.01 | -0.832940 | 7.097035e-56 | 8.052069e-53 |
| MsG0780036247.01 | MsG0780041423.01 | -0.804391 | 2.209201e-49 | 1.137680e-46 |
| MsG0780036247.01 | MsG0880042151.01 | -0.800547 | 1.369345e-48 | 6.393584e-46 |
| MsG0780036247.01 | MsG0880042219.01 | 0.834769 | 2.474206e-56 | 2.965169e-53 |
| MsG0780036247.01 | MsG0880042223.01 | -0.802340 | 5.878218e-49 | 2.872312e-46 |
| MsG0780036247.01 | MsG0880042399.01 | 0.811468 | 6.896275e-51 | 4.272265e-48 |
| MsG0780036247.01 | MsG0880042811.01 | -0.812649 | 3.811357e-51 | 2.436810e-48 |
| MsG0780036247.01 | MsG0880043082.01 | -0.842878 | 1.976158e-58 | 3.037452e-55 |
| MsG0780036247.01 | MsG0880043162.01 | -0.841210 | 5.455031e-58 | 7.957855e-55 |
| MsG0780036247.01 | MsG0880043341.01 | -0.828044 | 1.118740e-54 | 1.099357e-51 |
| MsG0780036247.01 | MsG0880044062.01 | 0.816796 | 4.598196e-52 | 3.290138e-49 |
| MsG0780036247.01 | MsG0880044409.01 | -0.805773 | 1.135462e-49 | 6.059314e-47 |
| MsG0780036247.01 | MsG0880044546.01 | -0.816608 | 5.065681e-52 | 3.606221e-49 |
| MsG0780036247.01 | MsG0880045106.01 | -0.827457 | 1.548372e-54 | 1.495696e-51 |
| MsG0780036247.01 | MsG0880045165.01 | -0.829339 | 5.441980e-55 | 5.554333e-52 |
| MsG0780036247.01 | MsG0880045479.01 | -0.810774 | 9.751038e-51 | 5.930930e-48 |
| MsG0780036247.01 | MsG0880045619.01 | -0.804361 | 2.241473e-49 | 1.153428e-46 |
| MsG0780036247.01 | MsG0880045631.01 | -0.828886 | 7.005346e-55 | 7.053618e-52 |
| MsG0780036247.01 | MsG0880045656.01 | -0.811890 | 5.582520e-51 | 3.497039e-48 |
| MsG0780036247.01 | MsG0880045705.01 | 0.858720 | 6.785000e-63 | 1.748255e-59 |
| MsG0780036247.01 | MsG0880046058.01 | -0.835753 | 1.396967e-56 | 1.724505e-53 |
| MsG0780036247.01 | MsG0880046068.01 | -0.802371 | 5.791108e-49 | 2.832089e-46 |
| MsG0780036247.01 | MsG0880046074.01 | -0.816428 | 5.558985e-52 | 3.937694e-49 |
| MsG0780036247.01 | MsG0880046177.01 | -0.818500 | 1.898067e-52 | 1.423209e-49 |
| MsG0780036247.01 | MsG0880046244.01 | -0.802256 | 6.114495e-49 | 2.981366e-46 |
| MsG0780036247.01 | MsG0880046329.01 | -0.809313 | 2.012513e-50 | 1.177671e-47 |
| MsG0780036247.01 | MsG0880046342.01 | -0.800942 | 1.137616e-48 | 5.365308e-46 |
| MsG0780036247.01 | MsG0880046933.01 | -0.808491 | 3.017821e-50 | 1.727906e-47 |
| MsG0780036247.01 | MsG0880047019.01 | -0.832857 | 7.438542e-56 | 8.418907e-53 |
| MsG0780036247.01 | MsG0880047038.01 | -0.804454 | 2.143823e-49 | 1.105786e-46 |
| MsG0780036247.01 | MsG0880047116.01 | -0.809789 | 1.590351e-50 | 9.425204e-48 |
| MsG0780036247.01 | MsG0880047143.01 | -0.818477 | 1.921032e-52 | 1.439559e-49 |
| MsG0780036247.01 | MsG0880047328.01 | 0.820895 | 5.385557e-53 | 4.315933e-50 |
| MsG0780036247.01 | MsG0880047428.01 | -0.813722 | 2.216538e-51 | 1.458720e-48 |
| MsG0780036247.01 | MsG0880047590.01 | -0.823024 | 1.730721e-53 | 1.472967e-50 |
| MsG0780036247.01 | MsG0880047607.01 | -0.844200 | 8.758575e-59 | 1.403574e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036247.01.T01 | MTR_5g008420 | 87.755 | 49 | 6 | 0 | 18 | 66 | 628 | 676 | 9.59e-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACCTGGTTGCCCATAAC+CGG | 0.242390 | 7:+5219254 | None:intergenic |
| CCTGGTGGACAACCCGGTTA+TGG | 0.315095 | 7:-5219267 | MsG0780036247.01.T01:CDS |
| CGCATAACTAGGTGCGGCCT+GGG | 0.374054 | 7:+5219233 | None:intergenic |
| CAAGCAGCATATCCTACATA+TGG | 0.383624 | 7:-5219361 | MsG0780036247.01.T01:CDS |
| CTGGTGGACAACCCGGTTAT+GGG | 0.385117 | 7:-5219266 | MsG0780036247.01.T01:CDS |
| GCGCATAACTAGGTGCGGCC+TGG | 0.388775 | 7:+5219232 | None:intergenic |
| TATGCGCAAGTTGGTCATAC+TGG | 0.399918 | 7:-5219216 | MsG0780036247.01.T01:CDS |
| AACCGGGTTGTCCACCAGGC+TGG | 0.415446 | 7:+5219271 | None:intergenic |
| CTATATCTATATGCATCATC+GGG | 0.416909 | 7:-5219391 | None:intergenic |
| CAAGTTGGTCATACTGGTTA+TGG | 0.420943 | 7:-5219210 | MsG0780036247.01.T01:CDS |
| CTAGGTGCGGCCTGGGCACC+TGG | 0.421749 | 7:+5219240 | None:intergenic |
| CCATAACCGGGTTGTCCACC+AGG | 0.453267 | 7:+5219267 | None:intergenic |
| ACTATATCTATATGCATCAT+CGG | 0.493050 | 7:-5219392 | None:intergenic |
| ACCGGGTTGTCCACCAGGCT+GGG | 0.494134 | 7:+5219272 | None:intergenic |
| GGCTGGGCATAAACTTGTCC+AGG | 0.498525 | 7:+5219288 | None:intergenic |
| TGACCAACTTGCGCATAACT+AGG | 0.503715 | 7:+5219222 | None:intergenic |
| AATCACCCGCAGTCTGCACC+TGG | 0.524809 | 7:-5219306 | MsG0780036247.01.T01:CDS |
| TTATGGGCAACCAGGTGCCC+AGG | 0.525214 | 7:-5219250 | MsG0780036247.01.T01:CDS |
| CTTGTCCAGGTGCAGACTGC+GGG | 0.527053 | 7:+5219301 | None:intergenic |
| GCCCAGCCTGGTGGACAACC+CGG | 0.535827 | 7:-5219273 | MsG0780036247.01.T01:CDS |
| GCACCTGGTTGCCCATAACC+GGG | 0.540537 | 7:+5219255 | None:intergenic |
| GGACAAGTTTATGCCCAGCC+TGG | 0.546505 | 7:-5219285 | MsG0780036247.01.T01:CDS |
| CACTCTGCACTAGCTGCCGA+TGG | 0.553366 | 7:-5219333 | MsG0780036247.01.T01:CDS |
| CAACCCGGTTATGGGCAACC+AGG | 0.556358 | 7:-5219258 | MsG0780036247.01.T01:CDS |
| AAGCAGCATATCCTACATAT+GGG | 0.560036 | 7:-5219360 | MsG0780036247.01.T01:CDS |
| CAGAGTGCAGACCCATATGT+AGG | 0.574828 | 7:+5219349 | None:intergenic |
| CAAGTTTATGCCCAGCCTGG+TGG | 0.621083 | 7:-5219282 | MsG0780036247.01.T01:CDS |
| CTGCGGGTGATTGTAACCAT+CGG | 0.627649 | 7:+5219317 | None:intergenic |
| GCACCTAGTTATGCGCAAGT+TGG | 0.628557 | 7:-5219225 | MsG0780036247.01.T01:CDS |
| ACTTGTCCAGGTGCAGACTG+CGG | 0.644028 | 7:+5219300 | None:intergenic |
| AACTTGCGCATAACTAGGTG+CGG | 0.662539 | 7:+5219227 | None:intergenic |
| TATATCTATATGCATCATCG+GGG | 0.741642 | 7:-5219390 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAGCAGCATATCCTACATAT+GGG | - | Chr7:5219224-5219243 | MsG0780036247.01.T01:CDS | 35.0% | |
| CAAGCAGCATATCCTACATA+TGG | - | Chr7:5219223-5219242 | MsG0780036247.01.T01:CDS | 40.0% | |
| !! | CAAGTTGGTCATACTGGTTA+TGG | - | Chr7:5219374-5219393 | MsG0780036247.01.T01:CDS | 40.0% |
| AACTTGCGCATAACTAGGTG+CGG | + | Chr7:5219360-5219379 | None:intergenic | 45.0% | |
| TGACCAACTTGCGCATAACT+AGG | + | Chr7:5219365-5219384 | None:intergenic | 45.0% | |
| !! | TATGCGCAAGTTGGTCATAC+TGG | - | Chr7:5219368-5219387 | MsG0780036247.01.T01:CDS | 45.0% |
| CAGAGTGCAGACCCATATGT+AGG | + | Chr7:5219238-5219257 | None:intergenic | 50.0% | |
| CTGCGGGTGATTGTAACCAT+CGG | + | Chr7:5219270-5219289 | None:intergenic | 50.0% | |
| GCACCTAGTTATGCGCAAGT+TGG | - | Chr7:5219359-5219378 | MsG0780036247.01.T01:CDS | 50.0% | |
| ACTTGTCCAGGTGCAGACTG+CGG | + | Chr7:5219287-5219306 | None:intergenic | 55.0% | |
| CAAGTTTATGCCCAGCCTGG+TGG | - | Chr7:5219302-5219321 | MsG0780036247.01.T01:CDS | 55.0% | |
| GGACAAGTTTATGCCCAGCC+TGG | - | Chr7:5219299-5219318 | MsG0780036247.01.T01:CDS | 55.0% | |
| GGCTGGGCATAAACTTGTCC+AGG | + | Chr7:5219299-5219318 | None:intergenic | 55.0% | |
| ! | CTGGTGGACAACCCGGTTAT+GGG | - | Chr7:5219318-5219337 | MsG0780036247.01.T01:CDS | 55.0% |
| AATCACCCGCAGTCTGCACC+TGG | - | Chr7:5219278-5219297 | MsG0780036247.01.T01:CDS | 60.0% | |
| CAACCCGGTTATGGGCAACC+AGG | - | Chr7:5219326-5219345 | MsG0780036247.01.T01:CDS | 60.0% | |
| CACTCTGCACTAGCTGCCGA+TGG | - | Chr7:5219251-5219270 | MsG0780036247.01.T01:CDS | 60.0% | |
| CCATAACCGGGTTGTCCACC+AGG | + | Chr7:5219320-5219339 | None:intergenic | 60.0% | |
| CGCATAACTAGGTGCGGCCT+GGG | + | Chr7:5219354-5219373 | None:intergenic | 60.0% | |
| CTTGTCCAGGTGCAGACTGC+GGG | + | Chr7:5219286-5219305 | None:intergenic | 60.0% | |
| GCACCTGGTTGCCCATAACC+GGG | + | Chr7:5219332-5219351 | None:intergenic | 60.0% | |
| GGCACCTGGTTGCCCATAAC+CGG | + | Chr7:5219333-5219352 | None:intergenic | 60.0% | |
| TTATGGGCAACCAGGTGCCC+AGG | - | Chr7:5219334-5219353 | MsG0780036247.01.T01:CDS | 60.0% | |
| ! | CCTGGTGGACAACCCGGTTA+TGG | - | Chr7:5219317-5219336 | MsG0780036247.01.T01:CDS | 60.0% |
| AACCGGGTTGTCCACCAGGC+TGG | + | Chr7:5219316-5219335 | None:intergenic | 65.0% | |
| ACCGGGTTGTCCACCAGGCT+GGG | + | Chr7:5219315-5219334 | None:intergenic | 65.0% | |
| GCGCATAACTAGGTGCGGCC+TGG | + | Chr7:5219355-5219374 | None:intergenic | 65.0% | |
| ! | GCCCAGCCTGGTGGACAACC+CGG | - | Chr7:5219311-5219330 | MsG0780036247.01.T01:CDS | 70.0% |
| CTAGGTGCGGCCTGGGCACC+TGG | + | Chr7:5219347-5219366 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 5219203 | 5219403 | 5219203 | ID=MsG0780036247.01;Name=MsG0780036247.01 |
| Chr7 | mRNA | 5219203 | 5219403 | 5219203 | ID=MsG0780036247.01.T01;Parent=MsG0780036247.01;Name=MsG0780036247.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|66 |
| Chr7 | exon | 5219203 | 5219403 | 5219203 | ID=MsG0780036247.01.T01:exon:2874;Parent=MsG0780036247.01.T01 |
| Chr7 | CDS | 5219203 | 5219403 | 5219203 | ID=MsG0780036247.01.T01:cds;Parent=MsG0780036247.01.T01 |
| Gene Sequence |
| Protein sequence |
