AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340700 MtrunA17_Chr2g0323371 99.127 229 2 0 1 229 1 229 1.66e-168 463
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340700 AT4G03280.1 75.000 232 52 4 1 229 1 229 9.78e-109 312
Msa0340700 AT4G03280.2 78.365 208 41 3 25 229 4 210 1.36e-102 296

Find 99 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGAAATGTTTGAATTTC+AGG 0.103896 2_4:+62076412 None:intergenic
TTCTTCTCAGCTTGATTAAA+TGG 0.193267 2_4:+62077255 None:intergenic
ACCTTGAATCTTCTTCTTCT+TGG 0.209001 2_4:-62078484 Msa0340700:CDS
GCTGGAATGCTTGTTCCTTA+TGG 0.229044 2_4:-62078442 Msa0340700:CDS
CCTTTCAAAACCAACTTATA+AGG 0.278531 2_4:+62076204 None:intergenic
TACTCTTACACAAGGATTAA+AGG 0.280573 2_4:-62077576 Msa0340700:intron
CCAATCATCTGAGTCCTTGT+TGG 0.323325 2_4:+62078586 None:intergenic
TAATCTAAATTTGAGGTTGA+TGG 0.337574 2_4:-62078955 None:intergenic
TGTCAATTGAAGCTGGTATA+AGG 0.374595 2_4:-62076346 Msa0340700:three_prime_UTR
GGAATTGCATGTCCTTCAAT+AGG 0.388895 2_4:-62078622 Msa0340700:CDS
GATACCTGAGAAGGGGTTGC+AGG 0.393811 2_4:+62078751 None:intergenic
AATAATAAGATGATTATGTT+TGG 0.402981 2_4:+62078842 None:intergenic
GCTCTTTCACTTCCTACTGC+TGG 0.406855 2_4:-62078460 Msa0340700:CDS
TGTGAGAGGACCTGCTCCTT+TGG 0.407122 2_4:-62077184 Msa0340700:intron
ATGGTTGATGAGGAAGATTT+TGG 0.420808 2_4:+62078793 None:intergenic
ATCTCCTGCAACCCCTTCTC+AGG 0.423342 2_4:-62078755 Msa0340700:intron
GGATCCTTCCTTGTTCCACC+AGG 0.427870 2_4:-62078421 Msa0340700:CDS
GGAAGGTTGTGTTTGTTCCA+TGG 0.434059 2_4:-62076520 Msa0340700:CDS
GTTGAAACAGATTTCAGAAC+AGG 0.439951 2_4:-62076497 Msa0340700:CDS
GTCTCTCTCTTACTCATGTC+AGG 0.452312 2_4:+62078505 None:intergenic
GTCCTCTCACAACTCTTCCT+TGG 0.456035 2_4:+62077196 None:intergenic
CTGAAATCTGTTTCAACCCA+TGG 0.465352 2_4:+62076503 None:intergenic
ACCAAGAAGAAGAAGATTCA+AGG 0.470226 2_4:+62078483 None:intergenic
AGCATCACTTGCCAGGCTAC+AGG 0.471775 2_4:-62078547 Msa0340700:CDS
GAAGCTGGTATAAGGTGAAA+AGG 0.478867 2_4:-62076338 Msa0340700:three_prime_UTR
TCAGATGATTGGTAAAGGTA+AGG 0.479300 2_4:-62078575 Msa0340700:CDS
GTGATTGGCTAAAGAATTTG+TGG 0.483008 2_4:-62078930 Msa0340700:five_prime_UTR
TTGAGGTTGATGGTTGTGAT+TGG 0.486493 2_4:-62078945 Msa0340700:five_prime_UTR
AAGAATTTGTGGCACCTACA+TGG 0.488848 2_4:-62078919 Msa0340700:five_prime_UTR
CACCACAATTGTCATGGATA+AGG 0.491093 2_4:+62078888 None:intergenic
GGGAATGAGCATCACTTGCC+AGG 0.491362 2_4:-62078554 Msa0340700:CDS
CAGCAGGAATGCCTGTAGCC+TGG 0.498499 2_4:+62078536 None:intergenic
GAAGGTTGTGTTTGTTCCAT+GGG 0.499364 2_4:-62076519 Msa0340700:CDS
TTCACAAGTAATCCTATTGA+AGG 0.499776 2_4:+62078610 None:intergenic
ATGCCGTATGCACTCACCTC+GGG 0.502003 2_4:-62077287 Msa0340700:CDS
AGGGGTTGCAGGAGATAGAG+TGG 0.502616 2_4:+62078762 None:intergenic
AGAAACGTAATCTAAATTTG+AGG 0.506943 2_4:-62078962 None:intergenic
AATTTGCTTACCAAAGGAGC+AGG 0.507050 2_4:+62077174 None:intergenic
TACAGCTCAGGTTCTTCCAC+TGG 0.509786 2_4:-62077677 Msa0340700:intron
TTAATCCTTGTGTAAGAGTA+CGG 0.511377 2_4:+62077579 None:intergenic
ACACCCGAGGTGAGTGCATA+CGG 0.514765 2_4:+62077284 None:intergenic
AAGTTCATCTGCCCCTGCCA+TGG 0.525212 2_4:-62077234 Msa0340700:CDS
TTGTGTAAGAGTACGGTCAC+CGG 0.527077 2_4:+62077586 None:intergenic
AATATCATGTCAATTGAAGC+TGG 0.530245 2_4:-62076353 Msa0340700:three_prime_UTR
CCAACAAGGACTCAGATGAT+TGG 0.533278 2_4:-62078586 Msa0340700:CDS
CGCCTTATCCATGACAATTG+TGG 0.535744 2_4:-62078890 Msa0340700:five_prime_UTR
TTGGTTGGCTTGAGAATGAA+AGG 0.542637 2_4:+62078812 None:intergenic
CAGATGATTGGTAAAGGTAA+GGG 0.543592 2_4:-62078574 Msa0340700:CDS
AACGACCACCACAATTGTCA+TGG 0.547551 2_4:+62078882 None:intergenic
CACTGGTGGTACTGTAGCAA+AGG 0.547649 2_4:-62077660 Msa0340700:CDS
GATCCTTCCTTGTTCCACCA+GGG 0.557310 2_4:-62078420 Msa0340700:intron
TGTTGGACAGTCTCTTGCGT+TGG 0.563000 2_4:-62076570 Msa0340700:intron
ATGTCAGGTACACGATCAGC+AGG 0.563729 2_4:+62078520 None:intergenic
CAGCTATGTTCTGGAAAGAG+TGG 0.564531 2_4:-62078643 Msa0340700:CDS
AGATAGAGTGGTGGAAGACA+TGG 0.564996 2_4:+62078774 None:intergenic
GTGATGTTAGTGTGGATGAT+GGG 0.565796 2_4:-62076541 Msa0340700:CDS
ATGATGTAGTTGCAGCGGAA+TGG 0.567006 2_4:-62077625 Msa0340700:CDS
AGCTCAGGTTCTTCCACTGG+TGG 0.569111 2_4:-62077674 Msa0340700:CDS
AGGACTCAGATGATTGGTAA+AGG 0.572119 2_4:-62078580 Msa0340700:CDS
TGTGATGTTAGTGTGGATGA+TGG 0.576215 2_4:-62076542 Msa0340700:CDS
TGTGTAAGAGTACGGTCACC+GGG 0.581349 2_4:+62077587 None:intergenic
ATTGTACTGAGATCCATGGC+AGG 0.582961 2_4:+62077221 None:intergenic
TGGCTAAAGTCACATGGACC+CGG 0.583593 2_4:-62077605 Msa0340700:CDS
TAACTAACCCTGGTGGAACA+AGG 0.585258 2_4:+62078413 None:intergenic
TCAGAACAGGTGATGCTCCA+TGG 0.585443 2_4:-62076484 Msa0340700:CDS
ACTGTAGCAAAGGATGCCGT+TGG 0.586270 2_4:-62077650 Msa0340700:CDS
GGAACAAGGAAGGATCCATA+AGG 0.588651 2_4:+62078427 None:intergenic
GGAACAAGCATTCCAGCAGT+AGG 0.593273 2_4:+62078448 None:intergenic
TGTTAGTGTGGATGATGGGA+AGG 0.602477 2_4:-62076537 Msa0340700:CDS
TTTGCAATGATACCTGAGAA+GGG 0.603738 2_4:+62078743 None:intergenic
GGTTGCAGGAGATAGAGTGG+TGG 0.603869 2_4:+62078765 None:intergenic
CTCTCTACCACAAGGTAGGT+AGG 0.607504 2_4:+62077339 None:intergenic
TTGCAATGATACCTGAGAAG+GGG 0.608443 2_4:+62078744 None:intergenic
TGCAACTACATCATTGCCAA+CGG 0.609037 2_4:+62077634 None:intergenic
TAACCCTGGTGGAACAAGGA+AGG 0.611521 2_4:+62078417 None:intergenic
AATGCCGTATGCACTCACCT+CGG 0.615718 2_4:-62077288 Msa0340700:CDS
GGTGGAAGACATGGTTGATG+AGG 0.617287 2_4:+62078783 None:intergenic
TTGTCATGGATAAGGCGCTA+AGG 0.619828 2_4:+62078896 None:intergenic
TTGTACTGAGATCCATGGCA+GGG 0.620918 2_4:+62077222 None:intergenic
GGTCATTGTACTGAGATCCA+TGG 0.630621 2_4:+62077217 None:intergenic
CTTATCCATGACAATTGTGG+TGG 0.640311 2_4:-62078887 Msa0340700:five_prime_UTR
GATTACTTGTGAAGCCAACA+AGG 0.642319 2_4:-62078600 Msa0340700:CDS
TGTACTGAGATCCATGGCAG+GGG 0.644236 2_4:+62077223 None:intergenic
TGGCAATGATGTAGTTGCAG+CGG 0.645737 2_4:-62077630 Msa0340700:CDS
GACCAAGGAAGAGTTGTGAG+AGG 0.654345 2_4:-62077198 Msa0340700:CDS
GGCACATTGTGATGTTAGTG+TGG 0.657647 2_4:-62076549 Msa0340700:CDS
ATAAGGCGCTAAGGCCATGT+AGG 0.660590 2_4:+62078905 None:intergenic
CTTTGCTACAGTACCACCAG+TGG 0.660969 2_4:+62077661 None:intergenic
GCGGAATGGCTAAAGTCACA+TGG 0.661778 2_4:-62077611 Msa0340700:CDS
AATAAAATAACTAACCCTGG+TGG 0.665632 2_4:+62078406 None:intergenic
GTATAAGGTGAAAAGGAACA+TGG 0.666831 2_4:-62076331 Msa0340700:three_prime_UTR
GTCACTCTCTACCACAAGGT+AGG 0.679600 2_4:+62077335 None:intergenic
TTCTGTCACTCTCTACCACA+AGG 0.682304 2_4:+62077331 None:intergenic
GGGTGATCCTACCTACCTTG+TGG 0.688352 2_4:-62077346 Msa0340700:CDS
GGATCTCAGTACAATGACCA+AGG 0.691042 2_4:-62077213 Msa0340700:CDS
TAAGATGTCTAAGACCACCA+TGG 0.706343 2_4:+62076467 None:intergenic
GGTGACCGTACTCTTACACA+AGG 0.707111 2_4:-62077584 Msa0340700:CDS
GAACAGGTGATGCTCCATGG+TGG 0.711317 2_4:-62076481 Msa0340700:CDS
TAAATGGCACGACACACCCG+AGG 0.714387 2_4:+62077271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTATTTATTTATTTT+TGG - chr2_4:62076463-62076482 Msa0340700:exon 0.0%
!!! TTTTTTAATATCTAATCTAA+AGG - chr2_4:62076430-62076449 Msa0340700:three_prime_UTR 10.0%
!!! TTTTTAATATCTAATCTAAA+GGG - chr2_4:62076431-62076450 Msa0340700:three_prime_UTR 10.0%
!!! TTAAGATTTTATTCTATATT+TGG - chr2_4:62076839-62076858 Msa0340700:intron 10.0%
!! ATTTATCAAATTAGTTATTA+TGG + chr2_4:62077757-62077776 None:intergenic 10.0%
!!! AACAAATTTATTTATTTTTC+AGG + chr2_4:62078445-62078464 None:intergenic 10.0%
!! AATAATAAGATGATTATGTT+TGG + chr2_4:62076293-62076312 None:intergenic 15.0%
!! AATTTGATAAATTCAATAAC+AGG - chr2_4:62077765-62077784 Msa0340700:intron 15.0%
!! ATTTGATAAATTCAATAACA+GGG - chr2_4:62077766-62077785 Msa0340700:intron 15.0%
!! AATAAGATGAAAATAGTTTA+TGG + chr2_4:62078167-62078186 None:intergenic 15.0%
!! TAATTAAATTGTTTAGTGAT+AGG - chr2_4:62078309-62078328 Msa0340700:intron 15.0%
!!! AAATAAATTTGTTTAGTGAT+AGG - chr2_4:62078452-62078471 Msa0340700:CDS 15.0%
!! ATAAATAAAATAACTAACCC+TGG + chr2_4:62076732-62076751 None:intergenic 20.0%
!! ATTAAATCAAGTGTATGTTT+AGG - chr2_4:62076920-62076939 Msa0340700:intron 20.0%
!! TATCAAATTAGTTATTATGG+TGG + chr2_4:62077754-62077773 None:intergenic 20.0%
!!! CTTTTTATGATTTGTTTCTT+GGG - chr2_4:62078053-62078072 Msa0340700:intron 20.0%
!! ATAATGTTCATTAATATTCC+AGG + chr2_4:62078533-62078552 None:intergenic 20.0%
!! GGAATATTAATGAACATTAT+TGG - chr2_4:62078533-62078552 Msa0340700:CDS 20.0%
! TATGTAATGTTGTGTAGTAT+AGG - chr2_4:62076977-62076996 Msa0340700:intron 25.0%
! GCAACATATAATTAGCAATA+TGG + chr2_4:62077355-62077374 None:intergenic 25.0%
!!! TTAAAGCATCGTAAAACTTT+TGG + chr2_4:62077387-62077406 None:intergenic 25.0%
! CTTAAGAAAACGACTTATAA+TGG + chr2_4:62077615-62077634 None:intergenic 25.0%
!!! GCTTTTTATGATTTGTTTCT+TGG - chr2_4:62078052-62078071 Msa0340700:intron 25.0%
! TATATAAGTTCAATCCAAAC+AGG + chr2_4:62078079-62078098 None:intergenic 25.0%
! AGCTATAAATTAACCTCTTA+AGG + chr2_4:62078408-62078427 None:intergenic 25.0%
!!! AACATTATTGGTCTTTATGT+TGG - chr2_4:62078545-62078564 Msa0340700:CDS 25.0%
! AACAGAAATGTTTGAATTTC+AGG + chr2_4:62078723-62078742 None:intergenic 25.0%
!! ACATTTTTCACCTTATAAGT+TGG - chr2_4:62078918-62078937 Msa0340700:five_prime_UTR 25.0%
TTCACAAGTAATCCTATTGA+AGG + chr2_4:62076525-62076544 None:intergenic 30.0%
AATAAAATAACTAACCCTGG+TGG + chr2_4:62076729-62076748 None:intergenic 30.0%
TTGTGTTTACATGTCAGTAT+CGG + chr2_4:62077037-62077056 None:intergenic 30.0%
! CAATTTGAAATCGTGTTCAA+GGG + chr2_4:62077144-62077163 None:intergenic 30.0%
! TCAATTTGAAATCGTGTTCA+AGG + chr2_4:62077145-62077164 None:intergenic 30.0%
AGTGTATAGCAAATAACCAT+CGG - chr2_4:62077215-62077234 Msa0340700:CDS 30.0%
GATACATGACTACATGAATT+AGG + chr2_4:62077264-62077283 None:intergenic 30.0%
ATCAAATCATTAACCAGTCT+CGG - chr2_4:62077424-62077443 Msa0340700:intron 30.0%
TTAATCCTTGTGTAAGAGTA+CGG + chr2_4:62077556-62077575 None:intergenic 30.0%
TACTCTTACACAAGGATTAA+AGG - chr2_4:62077556-62077575 Msa0340700:intron 30.0%
TAAGCACTTAAGATACTGTT+TGG - chr2_4:62077699-62077718 Msa0340700:intron 30.0%
TTCTTCTCAGCTTGATTAAA+TGG + chr2_4:62077880-62077899 None:intergenic 30.0%
!! TTTTCCAATTTGCTTACCAA+AGG + chr2_4:62077967-62077986 None:intergenic 30.0%
! AACTAGTTTGTCAAGTGATA+AGG + chr2_4:62077990-62078009 None:intergenic 30.0%
!! CTTATTTCTATATGCTCTCT+AGG - chr2_4:62078181-62078200 Msa0340700:intron 30.0%
TACCAATTAAGTTAAGCTCA+CGG + chr2_4:62078338-62078357 None:intergenic 30.0%
TGAGCTTAACTTAATTGGTA+GGG - chr2_4:62078338-62078357 Msa0340700:intron 30.0%
GAGGTTAATTTATAGCTACT+AGG - chr2_4:62078411-62078430 Msa0340700:intron 30.0%
TTTAGTGATAGGATAGCTTA+GGG - chr2_4:62078463-62078482 Msa0340700:CDS 30.0%
AATATCATGTCAATTGAAGC+TGG - chr2_4:62078779-62078798 Msa0340700:exon 30.0%
! GCAAAAAGTGCAAATTTATG+GGG + chr2_4:62078842-62078861 None:intergenic 30.0%
! CGCAAAAAGTGCAAATTTAT+GGG + chr2_4:62078843-62078862 None:intergenic 30.0%
! ACGCAAAAAGTGCAAATTTA+TGG + chr2_4:62078844-62078863 None:intergenic 30.0%
CCTTTCAAAACCAACTTATA+AGG + chr2_4:62078931-62078950 None:intergenic 30.0%
!!! CCTTATAAGTTGGTTTTGAA+AGG - chr2_4:62078928-62078947 Msa0340700:five_prime_UTR 30.0%
! GTGATTGGCTAAAGAATTTG+TGG - chr2_4:62076202-62076221 Msa0340700:three_prime_UTR 35.0%
!! TTGATGAGGAAGATTTTGGT+TGG + chr2_4:62076338-62076357 None:intergenic 35.0%
!!! ATGGTTGATGAGGAAGATTT+TGG + chr2_4:62076342-62076361 None:intergenic 35.0%
TTTGCAATGATACCTGAGAA+GGG + chr2_4:62076392-62076411 None:intergenic 35.0%
! TTTTGCAATGATACCTGAGA+AGG + chr2_4:62076393-62076412 None:intergenic 35.0%
!!! TTTTGGTTTCAGCTATGTTC+TGG - chr2_4:62076480-62076499 Msa0340700:CDS 35.0%
TCAGATGATTGGTAAAGGTA+AGG - chr2_4:62076557-62076576 Msa0340700:CDS 35.0%
CAGATGATTGGTAAAGGTAA+GGG - chr2_4:62076558-62076577 Msa0340700:CDS 35.0%
ACCTTGAATCTTCTTCTTCT+TGG - chr2_4:62076648-62076667 Msa0340700:intron 35.0%
ACCAAGAAGAAGAAGATTCA+AGG + chr2_4:62076652-62076671 None:intergenic 35.0%
CGACATAACTTCAATACATG+TGG + chr2_4:62077096-62077115 None:intergenic 35.0%
CAATATCTAGCAGACTAGTA+TGG + chr2_4:62077173-62077192 None:intergenic 35.0%
TCTTGTCTCATTAGCATCAA+AGG - chr2_4:62077296-62077315 Msa0340700:CDS 35.0%
TTACATAGACACACTGTTTG+AGG - chr2_4:62078110-62078129 Msa0340700:intron 35.0%
ACCAATTAAGTTAAGCTCAC+GGG + chr2_4:62078337-62078356 None:intergenic 35.0%
GTGAGCTTAACTTAATTGGT+AGG - chr2_4:62078337-62078356 Msa0340700:intron 35.0%
GACGTTGCATAATATATGCA+GGG - chr2_4:62078360-62078379 Msa0340700:intron 35.0%
ACCTCTTAAGGTGAATAAGT+GGG + chr2_4:62078396-62078415 None:intergenic 35.0%
AACCTCTTAAGGTGAATAAG+TGG + chr2_4:62078397-62078416 None:intergenic 35.0%
GTTTAGTGATAGGATAGCTT+AGG - chr2_4:62078462-62078481 Msa0340700:CDS 35.0%
GTTGAAACAGATTTCAGAAC+AGG - chr2_4:62078635-62078654 Msa0340700:CDS 35.0%
TGTCAATTGAAGCTGGTATA+AGG - chr2_4:62078786-62078805 Msa0340700:exon 35.0%
GTATAAGGTGAAAAGGAACA+TGG - chr2_4:62078801-62078820 Msa0340700:five_prime_UTR 35.0%
!! TTGAGGTTGATGGTTGTGAT+TGG - chr2_4:62076187-62076206 Msa0340700:three_prime_UTR 40.0%
AAGAATTTGTGGCACCTACA+TGG - chr2_4:62076213-62076232 Msa0340700:three_prime_UTR 40.0%
CACCACAATTGTCATGGATA+AGG + chr2_4:62076247-62076266 None:intergenic 40.0%
CTTATCCATGACAATTGTGG+TGG - chr2_4:62076245-62076264 Msa0340700:three_prime_UTR 40.0%
!! TTGGTTGGCTTGAGAATGAA+AGG + chr2_4:62076323-62076342 None:intergenic 40.0%
TTGCAATGATACCTGAGAAG+GGG + chr2_4:62076391-62076410 None:intergenic 40.0%
GGAATTGCATGTCCTTCAAT+AGG - chr2_4:62076510-62076529 Msa0340700:CDS 40.0%
GATTACTTGTGAAGCCAACA+AGG - chr2_4:62076532-62076551 Msa0340700:CDS 40.0%
AGGACTCAGATGATTGGTAA+AGG - chr2_4:62076552-62076571 Msa0340700:CDS 40.0%
TATAGTACATCGAAAGCCGA+TGG + chr2_4:62077234-62077253 None:intergenic 40.0%
GACTACATGAATTAGGTGCA+AGG + chr2_4:62077257-62077276 None:intergenic 40.0%
! CTGTAATTGTTTTCCGAGAC+TGG + chr2_4:62077440-62077459 None:intergenic 40.0%
TCGGAAAACAATTACAGCTC+AGG - chr2_4:62077443-62077462 Msa0340700:intron 40.0%
TGCAACTACATCATTGCCAA+CGG + chr2_4:62077501-62077520 None:intergenic 40.0%
GCAAGTGTACAATTGCAAAC+TGG - chr2_4:62077578-62077597 Msa0340700:CDS 40.0%
! ATTATGGTGGAAGCTTGAGA+AGG + chr2_4:62077741-62077760 None:intergenic 40.0%
! AATTTGCTTACCAAAGGAGC+AGG + chr2_4:62077961-62077980 None:intergenic 40.0%
TGCTCCTTTGGTAAGCAAAT+TGG - chr2_4:62077960-62077979 Msa0340700:intron 40.0%
! TGACAAACTAGTTTAGCTGC+AGG - chr2_4:62077997-62078016 Msa0340700:intron 40.0%
! ATTTGTTTCTTGGGCCTGTT+TGG - chr2_4:62078062-62078081 Msa0340700:intron 40.0%
CTAGGACAGCTTATAGCTTA+TGG - chr2_4:62078199-62078218 Msa0340700:intron 40.0%
CCAATTAAGTTAAGCTCACG+GGG + chr2_4:62078336-62078355 None:intergenic 40.0%
GGACGTTGCATAATATATGC+AGG - chr2_4:62078359-62078378 Msa0340700:intron 40.0%
CCTCTTAAGGTGAATAAGTG+GGG + chr2_4:62078395-62078414 None:intergenic 40.0%
ATGCATCATGTAGTTGTTCC+TGG - chr2_4:62078512-62078531 Msa0340700:CDS 40.0%
TGTGATGTTAGTGTGGATGA+TGG - chr2_4:62078590-62078609 Msa0340700:CDS 40.0%
GTGATGTTAGTGTGGATGAT+GGG - chr2_4:62078591-62078610 Msa0340700:CDS 40.0%
GAAGGTTGTGTTTGTTCCAT+GGG - chr2_4:62078613-62078632 Msa0340700:CDS 40.0%
CTGAAATCTGTTTCAACCCA+TGG + chr2_4:62078632-62078651 None:intergenic 40.0%
! TAAGATGTCTAAGACCACCA+TGG + chr2_4:62078668-62078687 None:intergenic 40.0%
GAAGCTGGTATAAGGTGAAA+AGG - chr2_4:62078794-62078813 Msa0340700:exon 40.0%
! TTGTCATGGATAAGGCGCTA+AGG + chr2_4:62076239-62076258 None:intergenic 45.0%
CGCCTTATCCATGACAATTG+TGG - chr2_4:62076242-62076261 Msa0340700:three_prime_UTR 45.0%
AACGACCACCACAATTGTCA+TGG + chr2_4:62076253-62076272 None:intergenic 45.0%
! AGATAGAGTGGTGGAAGACA+TGG + chr2_4:62076361-62076380 None:intergenic 45.0%
!! CAGCTATGTTCTGGAAAGAG+TGG - chr2_4:62076489-62076508 Msa0340700:CDS 45.0%
CCAATCATCTGAGTCCTTGT+TGG + chr2_4:62076549-62076568 None:intergenic 45.0%
CCAACAAGGACTCAGATGAT+TGG - chr2_4:62076546-62076565 Msa0340700:CDS 45.0%
GTCTCTCTCTTACTCATGTC+AGG + chr2_4:62076630-62076649 None:intergenic 45.0%
GCTGGAATGCTTGTTCCTTA+TGG - chr2_4:62076690-62076709 Msa0340700:intron 45.0%
GGAACAAGGAAGGATCCATA+AGG + chr2_4:62076708-62076727 None:intergenic 45.0%
TAACTAACCCTGGTGGAACA+AGG + chr2_4:62076722-62076741 None:intergenic 45.0%
TGGCAATGATGTAGTTGCAG+CGG - chr2_4:62077502-62077521 Msa0340700:intron 45.0%
ATGATGTAGTTGCAGCGGAA+TGG - chr2_4:62077507-62077526 Msa0340700:intron 45.0%
! TTGTGTAAGAGTACGGTCAC+CGG + chr2_4:62077549-62077568 None:intergenic 45.0%
TTCTGTCACTCTCTACCACA+AGG + chr2_4:62077804-62077823 None:intergenic 45.0%
TTGTACTGAGATCCATGGCA+GGG + chr2_4:62077913-62077932 None:intergenic 45.0%
ATTGTACTGAGATCCATGGC+AGG + chr2_4:62077914-62077933 None:intergenic 45.0%
GGTCATTGTACTGAGATCCA+TGG + chr2_4:62077918-62077937 None:intergenic 45.0%
GGATCTCAGTACAATGACCA+AGG - chr2_4:62077919-62077938 Msa0340700:intron 45.0%
CCCCGTGAGCTTAACTTAAT+TGG - chr2_4:62078333-62078352 Msa0340700:intron 45.0%
CCCCACTTATTCACCTTAAG+AGG - chr2_4:62078392-62078411 Msa0340700:intron 45.0%
GGCACATTGTGATGTTAGTG+TGG - chr2_4:62078583-62078602 Msa0340700:CDS 45.0%
!! TGTTAGTGTGGATGATGGGA+AGG - chr2_4:62078595-62078614 Msa0340700:CDS 45.0%
GGAAGGTTGTGTTTGTTCCA+TGG - chr2_4:62078612-62078631 Msa0340700:CDS 45.0%
! ATAAGGCGCTAAGGCCATGT+AGG + chr2_4:62076230-62076249 None:intergenic 50.0%
! GGTGGAAGACATGGTTGATG+AGG + chr2_4:62076352-62076371 None:intergenic 50.0%
ATGTCAGGTACACGATCAGC+AGG + chr2_4:62076615-62076634 None:intergenic 50.0%
GCTCTTTCACTTCCTACTGC+TGG - chr2_4:62076672-62076691 Msa0340700:intron 50.0%
GGAACAAGCATTCCAGCAGT+AGG + chr2_4:62076687-62076706 None:intergenic 50.0%
GATCCTTCCTTGTTCCACCA+GGG - chr2_4:62076712-62076731 Msa0340700:intron 50.0%
TAACCCTGGTGGAACAAGGA+AGG + chr2_4:62076718-62076737 None:intergenic 50.0%
ATCGTGTTCAAGGGCTCGAT+AGG + chr2_4:62077135-62077154 None:intergenic 50.0%
TACAGCTCAGGTTCTTCCAC+TGG - chr2_4:62077455-62077474 Msa0340700:intron 50.0%
CTTTGCTACAGTACCACCAG+TGG + chr2_4:62077474-62077493 None:intergenic 50.0%
CACTGGTGGTACTGTAGCAA+AGG - chr2_4:62077472-62077491 Msa0340700:intron 50.0%
ACTGTAGCAAAGGATGCCGT+TGG - chr2_4:62077482-62077501 Msa0340700:intron 50.0%
GCGGAATGGCTAAAGTCACA+TGG - chr2_4:62077521-62077540 Msa0340700:intron 50.0%
TGGCTAAAGTCACATGGACC+CGG - chr2_4:62077527-62077546 Msa0340700:intron 50.0%
! TGTGTAAGAGTACGGTCACC+GGG + chr2_4:62077548-62077567 None:intergenic 50.0%
GGTGACCGTACTCTTACACA+AGG - chr2_4:62077548-62077567 Msa0340700:intron 50.0%
CTCTCTACCACAAGGTAGGT+AGG + chr2_4:62077796-62077815 None:intergenic 50.0%
GTCACTCTCTACCACAAGGT+AGG + chr2_4:62077800-62077819 None:intergenic 50.0%
AATGCCGTATGCACTCACCT+CGG - chr2_4:62077844-62077863 Msa0340700:intron 50.0%
TGTACTGAGATCCATGGCAG+GGG + chr2_4:62077912-62077931 None:intergenic 50.0%
GACCAAGGAAGAGTTGTGAG+AGG - chr2_4:62077934-62077953 Msa0340700:intron 50.0%
GTCCTCTCACAACTCTTCCT+TGG + chr2_4:62077939-62077958 None:intergenic 50.0%
AGGTGAATAAGTGGGGTGTG+CGG + chr2_4:62078388-62078407 None:intergenic 50.0%
TGTTGGACAGTCTCTTGCGT+TGG - chr2_4:62078562-62078581 Msa0340700:CDS 50.0%
TCAGAACAGGTGATGCTCCA+TGG - chr2_4:62078648-62078667 Msa0340700:intron 50.0%
GGTTGCAGGAGATAGAGTGG+TGG + chr2_4:62076370-62076389 None:intergenic 55.0%
AGGGGTTGCAGGAGATAGAG+TGG + chr2_4:62076373-62076392 None:intergenic 55.0%
ATCTCCTGCAACCCCTTCTC+AGG - chr2_4:62076377-62076396 Msa0340700:three_prime_UTR 55.0%
GATACCTGAGAAGGGGTTGC+AGG + chr2_4:62076384-62076403 None:intergenic 55.0%
GGGAATGAGCATCACTTGCC+AGG - chr2_4:62076578-62076597 Msa0340700:intron 55.0%
AGCATCACTTGCCAGGCTAC+AGG - chr2_4:62076585-62076604 Msa0340700:intron 55.0%
GGATCCTTCCTTGTTCCACC+AGG - chr2_4:62076711-62076730 Msa0340700:intron 55.0%
AGCTCAGGTTCTTCCACTGG+TGG - chr2_4:62077458-62077477 Msa0340700:intron 55.0%
GGGTGATCCTACCTACCTTG+TGG - chr2_4:62077786-62077805 Msa0340700:intron 55.0%
ATGCCGTATGCACTCACCTC+GGG - chr2_4:62077845-62077864 Msa0340700:intron 55.0%
ACACCCGAGGTGAGTGCATA+CGG + chr2_4:62077851-62077870 None:intergenic 55.0%
TAAATGGCACGACACACCCG+AGG + chr2_4:62077864-62077883 None:intergenic 55.0%
AAGTTCATCTGCCCCTGCCA+TGG - chr2_4:62077898-62077917 Msa0340700:intron 55.0%
TGTGAGAGGACCTGCTCCTT+TGG - chr2_4:62077948-62077967 Msa0340700:intron 55.0%
GTGAATAAGTGGGGTGTGCG+GGG + chr2_4:62078386-62078405 None:intergenic 55.0%
GGTGAATAAGTGGGGTGTGC+GGG + chr2_4:62078387-62078406 None:intergenic 55.0%
GAACAGGTGATGCTCCATGG+TGG - chr2_4:62078651-62078670 Msa0340700:intron 55.0%
CAGCAGGAATGCCTGTAGCC+TGG + chr2_4:62076599-62076618 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 62076181 62078973 62076181 ID=Msa0340700;Name=Msa0340700
chr2_4 mRNA 62076181 62078973 62076181 ID=Msa0340700-mRNA-1;Parent=Msa0340700;Name=Msa0340700-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|1|1|1|1|1|5|294|229
chr2_4 exon 62076181 62076582 62076181 ID=Msa0340700-mRNA-1:exon:19669;Parent=Msa0340700-mRNA-1
chr2_4 exon 62077185 62077367 62077185 ID=Msa0340700-mRNA-1:exon:19668;Parent=Msa0340700-mRNA-1
chr2_4 exon 62077577 62077694 62077577 ID=Msa0340700-mRNA-1:exon:19667;Parent=Msa0340700-mRNA-1
chr2_4 exon 62078421 62078662 62078421 ID=Msa0340700-mRNA-1:exon:19666;Parent=Msa0340700-mRNA-1
chr2_4 exon 62078756 62078973 62078756 ID=Msa0340700-mRNA-1:exon:19665;Parent=Msa0340700-mRNA-1
chr2_4 five_prime_UTR 62078795 62078973 62078795 ID=Msa0340700-mRNA-1:five_prime_utr;Parent=Msa0340700-mRNA-1
chr2_4 CDS 62078756 62078794 62078756 ID=Msa0340700-mRNA-1:cds;Parent=Msa0340700-mRNA-1
chr2_4 CDS 62078421 62078662 62078421 ID=Msa0340700-mRNA-1:cds;Parent=Msa0340700-mRNA-1
chr2_4 CDS 62077577 62077694 62077577 ID=Msa0340700-mRNA-1:cds;Parent=Msa0340700-mRNA-1
chr2_4 CDS 62077185 62077367 62077185 ID=Msa0340700-mRNA-1:cds;Parent=Msa0340700-mRNA-1
chr2_4 CDS 62076475 62076582 62076475 ID=Msa0340700-mRNA-1:cds;Parent=Msa0340700-mRNA-1
chr2_4 three_prime_UTR 62076181 62076474 62076181 ID=Msa0340700-mRNA-1:three_prime_utr;Parent=Msa0340700-mRNA-1
Gene Sequence

>Msa0340700

ATGTCTTCCACCACTCTATCTCCTGCAACCCCTTCTCAGCTATGTTCTGGAAAGAGTGGAATTGCATGTCCTTCAATAGGATTACTTGTGAAGCCAACAAGGACTCAGATGATTGGTAAAGGTAAGGGAATGAGCATCACTTGCCAGGCTACAGGCATTCCTGCTGATCGTGTACCTGACATGAGTAAGAGAGAGACCTTGAATCTTCTTCTTCTTGGTGCTCTTTCACTTCCTACTGCTGGAATGCTTGTTCCTTATGGATCCTTCCTTGTTCCACCAGGCTCAGGTTCTTCCACTGGTGGTACTGTAGCAAAGGATGCCGTTGGCAATGATGTAGTTGCAGCGGAATGGCTAAAGTCACATGGACCCGGTGACCGTACTCTTACACAAGGATTAAAGGGTGATCCTACCTACCTTGTGGTAGAGAGTGACAGAACACTTGCAACATTTGCAATTAATGCCGTATGCACTCACCTCGGGTGTGTCGTGCCATTTAATCAAGCTGAGAAGAAGTTCATCTGCCCCTGCCATGGATCTCAGTACAATGACCAAGGAAGAGTTGTGAGAGGACCTGCTCCTTTGTCTCTTGCGTTGGCACATTGTGATGTTAGTGTGGATGATGGGAAGGTTGTGTTTGTTCCATGGGTTGAAACAGATTTCAGAACAGGTGATGCTCCATGGTGGTCTTAG

Protein sequence

>Msa0340700

MSSTTLSPATPSQLCSGKSGIACPSIGLLVKPTRTQMIGKGKGMSITCQATGIPADRVPDMSKRETLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVAAEWLKSHGPGDRTLTQGLKGDPTYLVVESDRTLATFAINAVCTHLGCVVPFNQAEKKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVSVDDGKVVFVPWVETDFRTGDAPWWS*