AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261350 MtrunA17_Chr2g0323371 99.563 229 1 0 1 229 1 229 7.70e-169 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261350 AT4G03280.1 75.000 232 52 4 1 229 1 229 1.09e-108 312
Msa0261350 AT4G03280.2 78.365 208 41 3 25 229 4 210 1.26e-102 296

Find 99 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGAAATGTTTGAATTTC+AGG 0.103896 2_2:-59676850 None:intergenic
TTCTTCTCAGCTTGATTAAA+TGG 0.193267 2_2:-59676007 None:intergenic
ACCTTGAATCTTCTTCTTCT+TGG 0.209001 2_2:+59674799 Msa0261350:CDS
GCTGGAATGCTTGTTCCTTA+TGG 0.229044 2_2:+59674841 Msa0261350:CDS
CCTTTCAAAACCAACTTATA+AGG 0.278531 2_2:-59677058 None:intergenic
TACTCTTACACAAGGATTAA+AGG 0.280573 2_2:+59675686 Msa0261350:CDS
CCAATCATCTGAGTCCTTGT+TGG 0.323325 2_2:-59674697 None:intergenic
GGAATTTCATGTCCTTCAAT+AGG 0.337281 2_2:+59674661 Msa0261350:CDS
TAATCTAAATTTGAGGTTGA+TGG 0.337574 2_2:+59674329 None:intergenic
GATACCTGAGAAGGGGTTGC+AGG 0.393811 2_2:-59674533 None:intergenic
AATAATAAGATGATTATGTT+TGG 0.402981 2_2:-59674442 None:intergenic
GCTCTTTCACTTCCTACTGC+TGG 0.406855 2_2:+59674823 Msa0261350:CDS
TGTGAGAGGACCTGCTCCTT+TGG 0.407122 2_2:+59676078 Msa0261350:CDS
ATGGTTGATGAGGAAGATTT+TGG 0.420808 2_2:-59674491 None:intergenic
ATCTCCTGCAACCCCTTCTC+AGG 0.423342 2_2:+59674529 Msa0261350:CDS
GGATCCTTCCTTGTTCCACC+AGG 0.427870 2_2:+59674862 Msa0261350:CDS
GGAAGGTTGTGTTTGTTCCA+TGG 0.434059 2_2:+59676742 Msa0261350:CDS
GTTGAAACAGATTTCAGAAC+AGG 0.439951 2_2:+59676765 Msa0261350:CDS
TGTCAATTGAAGCTGGTATA+AGG 0.450070 2_2:+59676916 Msa0261350:three_prime_UTR
GTCTCTCTCTTACTCATGTC+AGG 0.452312 2_2:-59674778 None:intergenic
GTCCTCTCACAACTCTTCCT+TGG 0.456035 2_2:-59676066 None:intergenic
CTGAAATCTGTTTCAACCCA+TGG 0.465352 2_2:-59676759 None:intergenic
ACCAAGAAGAAGAAGATTCA+AGG 0.470226 2_2:-59674800 None:intergenic
AGCATCACTTGCCAGGCTAC+AGG 0.471775 2_2:+59674736 Msa0261350:CDS
GAAGCTGGTATAAGGTGAAA+AGG 0.478867 2_2:+59676924 Msa0261350:three_prime_UTR
TCAGATGATTGGTAAAGGTA+AGG 0.479300 2_2:+59674708 Msa0261350:CDS
GTGATTGGCTAAAGAATTTG+TGG 0.483008 2_2:+59674354 Msa0261350:five_prime_UTR
TTGAGGTTGATGGTTGTGAT+TGG 0.486493 2_2:+59674339 Msa0261350:five_prime_UTR
AAGAATTTGTGGCACCTACA+TGG 0.488848 2_2:+59674365 Msa0261350:five_prime_UTR
CACCACAATTGTCATGGATA+AGG 0.491093 2_2:-59674396 None:intergenic
GGGAATGAGCATCACTTGCC+AGG 0.491362 2_2:+59674729 Msa0261350:CDS
CAGCAGGAATGCCTGTAGCC+TGG 0.498499 2_2:-59674747 None:intergenic
GAAGGTTGTGTTTGTTCCAT+GGG 0.499364 2_2:+59676743 Msa0261350:CDS
TTCACAAGTAATCCTATTGA+AGG 0.499776 2_2:-59674673 None:intergenic
ATGCCGTATGCACTCACCTC+GGG 0.502003 2_2:+59675975 Msa0261350:CDS
AGGGGTTGCAGGAGATAGAG+TGG 0.502616 2_2:-59674522 None:intergenic
AGAAACGTAATCTAAATTTG+AGG 0.506943 2_2:+59674322 None:intergenic
AATTTGCTTACCAAAGGAGC+AGG 0.507050 2_2:-59676088 None:intergenic
TACAGCTCAGGTTCTTCCAC+TGG 0.509786 2_2:+59675585 Msa0261350:intron
TTAATCCTTGTGTAAGAGTA+CGG 0.511377 2_2:-59675683 None:intergenic
ACACCCGAGGTGAGTGCATA+CGG 0.514765 2_2:-59675978 None:intergenic
AAGTTCATCTGCCCCTGCCA+TGG 0.525212 2_2:+59676028 Msa0261350:CDS
TTGTGTAAGAGTACGGTCAC+CGG 0.527077 2_2:-59675676 None:intergenic
CCAACAAGGACTCAGATGAT+TGG 0.533278 2_2:+59674697 Msa0261350:CDS
CGCCTTATCCATGACAATTG+TGG 0.535744 2_2:+59674394 Msa0261350:five_prime_UTR
TTGGTTGGCTTGAGAATGAA+AGG 0.542637 2_2:-59674472 None:intergenic
CAGATGATTGGTAAAGGTAA+GGG 0.543592 2_2:+59674709 Msa0261350:CDS
AATATGATGTCAATTGAAGC+TGG 0.545250 2_2:+59676909 Msa0261350:three_prime_UTR
AACGACCACCACAATTGTCA+TGG 0.547551 2_2:-59674402 None:intergenic
CACTGGTGGTACTGTAGCAA+AGG 0.547649 2_2:+59675602 Msa0261350:CDS
GATCCTTCCTTGTTCCACCA+GGG 0.557310 2_2:+59674863 Msa0261350:CDS
TGTTGGACAGTCTCTTGCGT+TGG 0.563000 2_2:+59676692 Msa0261350:intron
ATGTCAGGTACACGATCAGC+AGG 0.563729 2_2:-59674763 None:intergenic
CAGCTATGTTCTGGAAAGAG+TGG 0.564531 2_2:+59674640 Msa0261350:intron
AGATAGAGTGGTGGAAGACA+TGG 0.564996 2_2:-59674510 None:intergenic
GTGATGTTAGTGTGGATGAT+GGG 0.565796 2_2:+59676721 Msa0261350:CDS
ATGATGTAGTTGCAGCGGAA+TGG 0.567006 2_2:+59675637 Msa0261350:CDS
AGCTCAGGTTCTTCCACTGG+TGG 0.569111 2_2:+59675588 Msa0261350:intron
AGGACTCAGATGATTGGTAA+AGG 0.572119 2_2:+59674703 Msa0261350:CDS
TGTGATGTTAGTGTGGATGA+TGG 0.576215 2_2:+59676720 Msa0261350:CDS
TGTGTAAGAGTACGGTCACC+GGG 0.581349 2_2:-59675675 None:intergenic
ATTGTACTGAGATCCATGGC+AGG 0.582961 2_2:-59676041 None:intergenic
TGGCTAAAGTCACATGGACC+CGG 0.583593 2_2:+59675657 Msa0261350:CDS
TAACTAACCCTGGTGGAACA+AGG 0.585258 2_2:-59674870 None:intergenic
TCAGAACAGGTGATGCTCCA+TGG 0.585443 2_2:+59676778 Msa0261350:CDS
ACTGTAGCAAAGGATGCCGT+TGG 0.586270 2_2:+59675612 Msa0261350:CDS
GGAACAAGGAAGGATCCATA+AGG 0.588651 2_2:-59674856 None:intergenic
GGAACAAGCATTCCAGCAGT+AGG 0.593273 2_2:-59674835 None:intergenic
TGTTAGTGTGGATGATGGGA+AGG 0.602477 2_2:+59676725 Msa0261350:CDS
TTTGCAATGATACCTGAGAA+GGG 0.603738 2_2:-59674541 None:intergenic
GGTTGCAGGAGATAGAGTGG+TGG 0.603869 2_2:-59674519 None:intergenic
CTCTCTACCACAAGGTAGGT+AGG 0.607504 2_2:-59675923 None:intergenic
TTGCAATGATACCTGAGAAG+GGG 0.608443 2_2:-59674540 None:intergenic
TGCAACTACATCATTGCCAA+CGG 0.609037 2_2:-59675628 None:intergenic
TAACCCTGGTGGAACAAGGA+AGG 0.611521 2_2:-59674866 None:intergenic
AATGCCGTATGCACTCACCT+CGG 0.615718 2_2:+59675974 Msa0261350:CDS
GGTGGAAGACATGGTTGATG+AGG 0.617287 2_2:-59674501 None:intergenic
TTGTCATGGATAAGGCGCTA+AGG 0.619828 2_2:-59674388 None:intergenic
TTGTACTGAGATCCATGGCA+GGG 0.620918 2_2:-59676040 None:intergenic
GGTCATTGTACTGAGATCCA+TGG 0.630621 2_2:-59676045 None:intergenic
CTTATCCATGACAATTGTGG+TGG 0.640311 2_2:+59674397 Msa0261350:five_prime_UTR
GATTACTTGTGAAGCCAACA+AGG 0.642319 2_2:+59674683 Msa0261350:CDS
TGTACTGAGATCCATGGCAG+GGG 0.644236 2_2:-59676039 None:intergenic
TGGCAATGATGTAGTTGCAG+CGG 0.645737 2_2:+59675632 Msa0261350:CDS
GACCAAGGAAGAGTTGTGAG+AGG 0.654345 2_2:+59676064 Msa0261350:CDS
GGCACATTGTGATGTTAGTG+TGG 0.657647 2_2:+59676713 Msa0261350:CDS
ATAAGGCGCTAAGGCCATGT+AGG 0.660590 2_2:-59674379 None:intergenic
CTTTGCTACAGTACCACCAG+TGG 0.660969 2_2:-59675601 None:intergenic
GCGGAATGGCTAAAGTCACA+TGG 0.661778 2_2:+59675651 Msa0261350:CDS
AATAAAATAACTAACCCTGG+TGG 0.665632 2_2:-59674877 None:intergenic
GTATAAGGTGAAAAGGAACA+TGG 0.666831 2_2:+59676931 Msa0261350:three_prime_UTR
GTCACTCTCTACCACAAGGT+AGG 0.679600 2_2:-59675927 None:intergenic
TTCTGTCACTCTCTACCACA+AGG 0.682304 2_2:-59675931 None:intergenic
GGGTGATCCTACCTACCTTG+TGG 0.688352 2_2:+59675916 Msa0261350:intron
GGATCTCAGTACAATGACCA+AGG 0.691042 2_2:+59676049 Msa0261350:CDS
TAAGATGTCTAAGACCACCA+TGG 0.706343 2_2:-59676795 None:intergenic
GGTGACCGTACTCTTACACA+AGG 0.707111 2_2:+59675678 Msa0261350:CDS
GAACAGGTGATGCTCCATGG+TGG 0.711317 2_2:+59676781 Msa0261350:CDS
TAAATGGCACGACACACCCG+AGG 0.714387 2_2:-59675991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTATTTATTTATTT+TGG + chr2_2:59674614-59674633 Msa0261350:intron 0.0%
!!! TTTTTTAATATCTAATCTAA+AGG + chr2_2:59674582-59674601 Msa0261350:intron 10.0%
!!! TTTTTAATATCTAATCTAAA+GGG + chr2_2:59674583-59674602 Msa0261350:intron 10.0%
!!! AACAAATTTATTTATTTTTC+AGG - chr2_2:59676575-59676594 None:intergenic 10.0%
!! AATAATAAGATGATTATGTT+TGG - chr2_2:59674445-59674464 None:intergenic 15.0%
!!! TTAAGGTTTTATTCTATATT+TGG + chr2_2:59674990-59675009 Msa0261350:intron 15.0%
!! ATTTATCAAAGTAGTTATTA+TGG - chr2_2:59675887-59675906 None:intergenic 15.0%
!! AATAAGATGAAAATAGTTTA+TGG - chr2_2:59676297-59676316 None:intergenic 15.0%
!! TAATTAAATTGTTTAGTGAT+AGG + chr2_2:59676439-59676458 Msa0261350:intron 15.0%
!!! AAATAAATTTGTTTAGTGAT+AGG + chr2_2:59676582-59676601 Msa0261350:intron 15.0%
!! ATAAATAAAATAACTAACCC+TGG - chr2_2:59674883-59674902 None:intergenic 20.0%
!! ATTAAATCAAGTGTATGTTT+AGG + chr2_2:59675071-59675090 Msa0261350:intron 20.0%
!! ACTTTGATAAATTCAATAAC+AGG + chr2_2:59675895-59675914 Msa0261350:intron 20.0%
!! CTTTGATAAATTCAATAACA+GGG + chr2_2:59675896-59675915 Msa0261350:intron 20.0%
!!! CTTTTTATGATTTGTTTCTT+GGG + chr2_2:59676183-59676202 Msa0261350:intron 20.0%
!! ATAATGTTCATTAATATTCC+AGG - chr2_2:59676663-59676682 None:intergenic 20.0%
!! GGAATATTAATGAACATTAT+TGG + chr2_2:59676663-59676682 Msa0261350:intron 20.0%
!!! CATGTTTTTAGCTCAAATTA+AGG + chr2_2:59674973-59674992 Msa0261350:intron 25.0%
! TATGTAATGTTGTGTAGTAT+AGG + chr2_2:59675128-59675147 Msa0261350:intron 25.0%
! GCAACATATAATTAGCAATA+TGG - chr2_2:59675485-59675504 None:intergenic 25.0%
!!! TTAAAGCATCGTAAAACTTT+TGG - chr2_2:59675517-59675536 None:intergenic 25.0%
! CTTATGAAAACGACTTATAA+TGG - chr2_2:59675745-59675764 None:intergenic 25.0%
! TATCAAAGTAGTTATTATGG+TGG - chr2_2:59675884-59675903 None:intergenic 25.0%
!!! GCTTTTTATGATTTGTTTCT+TGG + chr2_2:59676182-59676201 Msa0261350:intron 25.0%
! AGCTATAAATTAACCTCTTA+AGG - chr2_2:59676538-59676557 None:intergenic 25.0%
!!! AACATTATTGGTCTTTATGT+TGG + chr2_2:59676675-59676694 Msa0261350:intron 25.0%
! AACAGAAATGTTTGAATTTC+AGG - chr2_2:59676853-59676872 None:intergenic 25.0%
!! ACATTTTTCACCTTATAAGT+TGG + chr2_2:59677048-59677067 Msa0261350:three_prime_UTR 25.0%
TTCACAAGTAATCCTATTGA+AGG - chr2_2:59674676-59674695 None:intergenic 30.0%
AATAAAATAACTAACCCTGG+TGG - chr2_2:59674880-59674899 None:intergenic 30.0%
TTGTGTTTACATGTCAGTAT+CGG - chr2_2:59675188-59675207 None:intergenic 30.0%
! CAATTTGAAATCGTGTTCAA+GGG - chr2_2:59675295-59675314 None:intergenic 30.0%
! TCAATTTGAAATCGTGTTCA+AGG - chr2_2:59675296-59675315 None:intergenic 30.0%
AGTGTATAGCAAATAACCAT+CGG + chr2_2:59675344-59675363 Msa0261350:intron 30.0%
GATACATGACTACATGAATT+AGG - chr2_2:59675394-59675413 None:intergenic 30.0%
ATCAAATCATTAACCAGTCT+CGG + chr2_2:59675554-59675573 Msa0261350:intron 30.0%
TTAATCCTTGTGTAAGAGTA+CGG - chr2_2:59675686-59675705 None:intergenic 30.0%
TACTCTTACACAAGGATTAA+AGG + chr2_2:59675686-59675705 Msa0261350:CDS 30.0%
TAAGCACTTAAGATACTGTT+TGG + chr2_2:59675829-59675848 Msa0261350:intron 30.0%
TTCTTCTCAGCTTGATTAAA+TGG - chr2_2:59676010-59676029 None:intergenic 30.0%
!! TTTTCCAATTTGCTTACCAA+AGG - chr2_2:59676097-59676116 None:intergenic 30.0%
! AACTAGTTTGTCAAGTGATA+AGG - chr2_2:59676120-59676139 None:intergenic 30.0%
!! CTTATTTCTATATGCTCTCT+AGG + chr2_2:59676311-59676330 Msa0261350:intron 30.0%
GAGGTTAATTTATAGCTACT+AGG + chr2_2:59676541-59676560 Msa0261350:intron 30.0%
TTTAGTGATAGGATAGCTTA+GGG + chr2_2:59676593-59676612 Msa0261350:intron 30.0%
AATATGATGTCAATTGAAGC+TGG + chr2_2:59676909-59676928 Msa0261350:three_prime_UTR 30.0%
! GCAAAAAGTGCAAATTTATG+GGG - chr2_2:59676972-59676991 None:intergenic 30.0%
! CGCAAAAAGTGCAAATTTAT+GGG - chr2_2:59676973-59676992 None:intergenic 30.0%
! ACGCAAAAAGTGCAAATTTA+TGG - chr2_2:59676974-59676993 None:intergenic 30.0%
CCTTTCAAAACCAACTTATA+AGG - chr2_2:59677061-59677080 None:intergenic 30.0%
!!! CCTTATAAGTTGGTTTTGAA+AGG + chr2_2:59677058-59677077 Msa0261350:three_prime_UTR 30.0%
! GTGATTGGCTAAAGAATTTG+TGG + chr2_2:59674354-59674373 Msa0261350:five_prime_UTR 35.0%
!! TTGATGAGGAAGATTTTGGT+TGG - chr2_2:59674490-59674509 None:intergenic 35.0%
!!! ATGGTTGATGAGGAAGATTT+TGG - chr2_2:59674494-59674513 None:intergenic 35.0%
TTTGCAATGATACCTGAGAA+GGG - chr2_2:59674544-59674563 None:intergenic 35.0%
! TTTTGCAATGATACCTGAGA+AGG - chr2_2:59674545-59674564 None:intergenic 35.0%
!!! TTTTGGTTTCAGCTATGTTC+TGG + chr2_2:59674631-59674650 Msa0261350:intron 35.0%
GGAATTTCATGTCCTTCAAT+AGG + chr2_2:59674661-59674680 Msa0261350:CDS 35.0%
TCAGATGATTGGTAAAGGTA+AGG + chr2_2:59674708-59674727 Msa0261350:CDS 35.0%
CAGATGATTGGTAAAGGTAA+GGG + chr2_2:59674709-59674728 Msa0261350:CDS 35.0%
ACCTTGAATCTTCTTCTTCT+TGG + chr2_2:59674799-59674818 Msa0261350:CDS 35.0%
ACCAAGAAGAAGAAGATTCA+AGG - chr2_2:59674803-59674822 None:intergenic 35.0%
TCTTGTCTCATTAGCATCAA+AGG + chr2_2:59675426-59675445 Msa0261350:intron 35.0%
! ATTTGTTTCTTGGGTCTGTT+TGG + chr2_2:59676192-59676211 Msa0261350:intron 35.0%
TTACATAGACACACTGTTTG+AGG + chr2_2:59676240-59676259 Msa0261350:intron 35.0%
TACCAACTAAGTTAAGCTCA+CGG - chr2_2:59676468-59676487 None:intergenic 35.0%
! TGAGCTTAACTTAGTTGGTA+GGG + chr2_2:59676468-59676487 Msa0261350:intron 35.0%
GACGTTGCATAATATATGCA+GGG + chr2_2:59676490-59676509 Msa0261350:intron 35.0%
ACCTCTTAAGGTGAATAAGT+GGG - chr2_2:59676526-59676545 None:intergenic 35.0%
AACCTCTTAAGGTGAATAAG+TGG - chr2_2:59676527-59676546 None:intergenic 35.0%
GTTTAGTGATAGGATAGCTT+AGG + chr2_2:59676592-59676611 Msa0261350:intron 35.0%
GTTGAAACAGATTTCAGAAC+AGG + chr2_2:59676765-59676784 Msa0261350:CDS 35.0%
TGTCAATTGAAGCTGGTATA+AGG + chr2_2:59676916-59676935 Msa0261350:three_prime_UTR 35.0%
GTATAAGGTGAAAAGGAACA+TGG + chr2_2:59676931-59676950 Msa0261350:three_prime_UTR 35.0%
!! TTGAGGTTGATGGTTGTGAT+TGG + chr2_2:59674339-59674358 Msa0261350:five_prime_UTR 40.0%
AAGAATTTGTGGCACCTACA+TGG + chr2_2:59674365-59674384 Msa0261350:five_prime_UTR 40.0%
CACCACAATTGTCATGGATA+AGG - chr2_2:59674399-59674418 None:intergenic 40.0%
CTTATCCATGACAATTGTGG+TGG + chr2_2:59674397-59674416 Msa0261350:five_prime_UTR 40.0%
!! TTGGTTGGCTTGAGAATGAA+AGG - chr2_2:59674475-59674494 None:intergenic 40.0%
TTGCAATGATACCTGAGAAG+GGG - chr2_2:59674543-59674562 None:intergenic 40.0%
GATTACTTGTGAAGCCAACA+AGG + chr2_2:59674683-59674702 Msa0261350:CDS 40.0%
AGGACTCAGATGATTGGTAA+AGG + chr2_2:59674703-59674722 Msa0261350:CDS 40.0%
CGACATAACTTCGATACATG+TGG - chr2_2:59675247-59675266 None:intergenic 40.0%
TGCTATCTAGCAGACTAGTA+TGG - chr2_2:59675324-59675343 None:intergenic 40.0%
GACTACATGAATTAGGTGCA+AGG - chr2_2:59675387-59675406 None:intergenic 40.0%
! CTGTAATTGTTTTCCGAGAC+TGG - chr2_2:59675570-59675589 None:intergenic 40.0%
TCGGAAAACAATTACAGCTC+AGG + chr2_2:59675573-59675592 Msa0261350:intron 40.0%
TGCAACTACATCATTGCCAA+CGG - chr2_2:59675631-59675650 None:intergenic 40.0%
GCAAGTGTACAATTGCAAAC+TGG + chr2_2:59675708-59675727 Msa0261350:intron 40.0%
! ATTATGGTGGAAGCTTGAGA+AGG - chr2_2:59675871-59675890 None:intergenic 40.0%
! AATTTGCTTACCAAAGGAGC+AGG - chr2_2:59676091-59676110 None:intergenic 40.0%
TGCTCCTTTGGTAAGCAAAT+TGG + chr2_2:59676090-59676109 Msa0261350:intron 40.0%
! TGACAAACTAGTTTAGCTGC+AGG + chr2_2:59676127-59676146 Msa0261350:intron 40.0%
CTAGGACTGCTTATAGCTTA+TGG + chr2_2:59676329-59676348 Msa0261350:intron 40.0%
GTGAGCTTAACTTAGTTGGT+AGG + chr2_2:59676467-59676486 Msa0261350:intron 40.0%
GGACGTTGCATAATATATGC+AGG + chr2_2:59676489-59676508 Msa0261350:intron 40.0%
CCTCTTAAGGTGAATAAGTG+GGG - chr2_2:59676525-59676544 None:intergenic 40.0%
ATGCATCATGTAGTTGTTCC+TGG + chr2_2:59676642-59676661 Msa0261350:intron 40.0%
TGTGATGTTAGTGTGGATGA+TGG + chr2_2:59676720-59676739 Msa0261350:CDS 40.0%
GTGATGTTAGTGTGGATGAT+GGG + chr2_2:59676721-59676740 Msa0261350:CDS 40.0%
GAAGGTTGTGTTTGTTCCAT+GGG + chr2_2:59676743-59676762 Msa0261350:CDS 40.0%
CTGAAATCTGTTTCAACCCA+TGG - chr2_2:59676762-59676781 None:intergenic 40.0%
! TAAGATGTCTAAGACCACCA+TGG - chr2_2:59676798-59676817 None:intergenic 40.0%
GAAGCTGGTATAAGGTGAAA+AGG + chr2_2:59676924-59676943 Msa0261350:three_prime_UTR 40.0%
! TTGTCATGGATAAGGCGCTA+AGG - chr2_2:59674391-59674410 None:intergenic 45.0%
CGCCTTATCCATGACAATTG+TGG + chr2_2:59674394-59674413 Msa0261350:five_prime_UTR 45.0%
AACGACCACCACAATTGTCA+TGG - chr2_2:59674405-59674424 None:intergenic 45.0%
! AGATAGAGTGGTGGAAGACA+TGG - chr2_2:59674513-59674532 None:intergenic 45.0%
!! CAGCTATGTTCTGGAAAGAG+TGG + chr2_2:59674640-59674659 Msa0261350:intron 45.0%
CCAATCATCTGAGTCCTTGT+TGG - chr2_2:59674700-59674719 None:intergenic 45.0%
CCAACAAGGACTCAGATGAT+TGG + chr2_2:59674697-59674716 Msa0261350:CDS 45.0%
GTCTCTCTCTTACTCATGTC+AGG - chr2_2:59674781-59674800 None:intergenic 45.0%
GCTGGAATGCTTGTTCCTTA+TGG + chr2_2:59674841-59674860 Msa0261350:CDS 45.0%
GGAACAAGGAAGGATCCATA+AGG - chr2_2:59674859-59674878 None:intergenic 45.0%
TAACTAACCCTGGTGGAACA+AGG - chr2_2:59674873-59674892 None:intergenic 45.0%
ACAGTACAATCGAAAGCCGA+TGG - chr2_2:59675363-59675382 None:intergenic 45.0%
TGGCAATGATGTAGTTGCAG+CGG + chr2_2:59675632-59675651 Msa0261350:CDS 45.0%
ATGATGTAGTTGCAGCGGAA+TGG + chr2_2:59675637-59675656 Msa0261350:CDS 45.0%
! TTGTGTAAGAGTACGGTCAC+CGG - chr2_2:59675679-59675698 None:intergenic 45.0%
TTCTGTCACTCTCTACCACA+AGG - chr2_2:59675934-59675953 None:intergenic 45.0%
TTGTACTGAGATCCATGGCA+GGG - chr2_2:59676043-59676062 None:intergenic 45.0%
ATTGTACTGAGATCCATGGC+AGG - chr2_2:59676044-59676063 None:intergenic 45.0%
GGTCATTGTACTGAGATCCA+TGG - chr2_2:59676048-59676067 None:intergenic 45.0%
GGATCTCAGTACAATGACCA+AGG + chr2_2:59676049-59676068 Msa0261350:CDS 45.0%
CTCCGTGAGCTTAACTTAGT+TGG + chr2_2:59676463-59676482 Msa0261350:intron 45.0%
CCCCACTTATTCACCTTAAG+AGG + chr2_2:59676522-59676541 Msa0261350:intron 45.0%
GGCACATTGTGATGTTAGTG+TGG + chr2_2:59676713-59676732 Msa0261350:CDS 45.0%
!! TGTTAGTGTGGATGATGGGA+AGG + chr2_2:59676725-59676744 Msa0261350:CDS 45.0%
GGAAGGTTGTGTTTGTTCCA+TGG + chr2_2:59676742-59676761 Msa0261350:CDS 45.0%
! ATAAGGCGCTAAGGCCATGT+AGG - chr2_2:59674382-59674401 None:intergenic 50.0%
! GGTGGAAGACATGGTTGATG+AGG - chr2_2:59674504-59674523 None:intergenic 50.0%
ATGTCAGGTACACGATCAGC+AGG - chr2_2:59674766-59674785 None:intergenic 50.0%
GCTCTTTCACTTCCTACTGC+TGG + chr2_2:59674823-59674842 Msa0261350:CDS 50.0%
GGAACAAGCATTCCAGCAGT+AGG - chr2_2:59674838-59674857 None:intergenic 50.0%
GATCCTTCCTTGTTCCACCA+GGG + chr2_2:59674863-59674882 Msa0261350:CDS 50.0%
TAACCCTGGTGGAACAAGGA+AGG - chr2_2:59674869-59674888 None:intergenic 50.0%
ATCGTGTTCAAGGGCTCGAT+AGG - chr2_2:59675286-59675305 None:intergenic 50.0%
TACAGCTCAGGTTCTTCCAC+TGG + chr2_2:59675585-59675604 Msa0261350:intron 50.0%
CTTTGCTACAGTACCACCAG+TGG - chr2_2:59675604-59675623 None:intergenic 50.0%
CACTGGTGGTACTGTAGCAA+AGG + chr2_2:59675602-59675621 Msa0261350:CDS 50.0%
ACTGTAGCAAAGGATGCCGT+TGG + chr2_2:59675612-59675631 Msa0261350:CDS 50.0%
GCGGAATGGCTAAAGTCACA+TGG + chr2_2:59675651-59675670 Msa0261350:CDS 50.0%
TGGCTAAAGTCACATGGACC+CGG + chr2_2:59675657-59675676 Msa0261350:CDS 50.0%
! TGTGTAAGAGTACGGTCACC+GGG - chr2_2:59675678-59675697 None:intergenic 50.0%
GGTGACCGTACTCTTACACA+AGG + chr2_2:59675678-59675697 Msa0261350:CDS 50.0%
CTCTCTACCACAAGGTAGGT+AGG - chr2_2:59675926-59675945 None:intergenic 50.0%
GTCACTCTCTACCACAAGGT+AGG - chr2_2:59675930-59675949 None:intergenic 50.0%
AATGCCGTATGCACTCACCT+CGG + chr2_2:59675974-59675993 Msa0261350:CDS 50.0%
TGTACTGAGATCCATGGCAG+GGG - chr2_2:59676042-59676061 None:intergenic 50.0%
GACCAAGGAAGAGTTGTGAG+AGG + chr2_2:59676064-59676083 Msa0261350:CDS 50.0%
GTCCTCTCACAACTCTTCCT+TGG - chr2_2:59676069-59676088 None:intergenic 50.0%
AGGTGAATAAGTGGGGTGTG+CGG - chr2_2:59676518-59676537 None:intergenic 50.0%
TGTTGGACAGTCTCTTGCGT+TGG + chr2_2:59676692-59676711 Msa0261350:intron 50.0%
TCAGAACAGGTGATGCTCCA+TGG + chr2_2:59676778-59676797 Msa0261350:CDS 50.0%
GGTTGCAGGAGATAGAGTGG+TGG - chr2_2:59674522-59674541 None:intergenic 55.0%
AGGGGTTGCAGGAGATAGAG+TGG - chr2_2:59674525-59674544 None:intergenic 55.0%
ATCTCCTGCAACCCCTTCTC+AGG + chr2_2:59674529-59674548 Msa0261350:CDS 55.0%
GATACCTGAGAAGGGGTTGC+AGG - chr2_2:59674536-59674555 None:intergenic 55.0%
GGGAATGAGCATCACTTGCC+AGG + chr2_2:59674729-59674748 Msa0261350:CDS 55.0%
AGCATCACTTGCCAGGCTAC+AGG + chr2_2:59674736-59674755 Msa0261350:CDS 55.0%
GGATCCTTCCTTGTTCCACC+AGG + chr2_2:59674862-59674881 Msa0261350:CDS 55.0%
AGCTCAGGTTCTTCCACTGG+TGG + chr2_2:59675588-59675607 Msa0261350:intron 55.0%
GGGTGATCCTACCTACCTTG+TGG + chr2_2:59675916-59675935 Msa0261350:intron 55.0%
ATGCCGTATGCACTCACCTC+GGG + chr2_2:59675975-59675994 Msa0261350:CDS 55.0%
ACACCCGAGGTGAGTGCATA+CGG - chr2_2:59675981-59676000 None:intergenic 55.0%
TAAATGGCACGACACACCCG+AGG - chr2_2:59675994-59676013 None:intergenic 55.0%
AAGTTCATCTGCCCCTGCCA+TGG + chr2_2:59676028-59676047 Msa0261350:CDS 55.0%
TGTGAGAGGACCTGCTCCTT+TGG + chr2_2:59676078-59676097 Msa0261350:CDS 55.0%
GTGAATAAGTGGGGTGTGCG+GGG - chr2_2:59676516-59676535 None:intergenic 55.0%
GGTGAATAAGTGGGGTGTGC+GGG - chr2_2:59676517-59676536 None:intergenic 55.0%
GAACAGGTGATGCTCCATGG+TGG + chr2_2:59676781-59676800 Msa0261350:CDS 55.0%
CAGCAGGAATGCCTGTAGCC+TGG - chr2_2:59674750-59674769 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 59674333 59677103 59674333 ID=Msa0261350;Name=Msa0261350
chr2_2 mRNA 59674333 59677103 59674333 ID=Msa0261350-mRNA-1;Parent=Msa0261350;Name=Msa0261350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=179|1|1|1|1|1|5|294|229
chr2_2 exon 59674333 59674550 59674333 ID=Msa0261350-mRNA-1:exon:18361;Parent=Msa0261350-mRNA-1
chr2_2 exon 59674643 59674884 59674643 ID=Msa0261350-mRNA-1:exon:18362;Parent=Msa0261350-mRNA-1
chr2_2 exon 59675590 59675707 59675590 ID=Msa0261350-mRNA-1:exon:18363;Parent=Msa0261350-mRNA-1
chr2_2 exon 59675917 59676099 59675917 ID=Msa0261350-mRNA-1:exon:18364;Parent=Msa0261350-mRNA-1
chr2_2 exon 59676702 59677103 59676702 ID=Msa0261350-mRNA-1:exon:18365;Parent=Msa0261350-mRNA-1
chr2_2 five_prime_UTR 59674333 59674511 59674333 ID=Msa0261350-mRNA-1:five_prime_utr;Parent=Msa0261350-mRNA-1
chr2_2 CDS 59674512 59674550 59674512 ID=Msa0261350-mRNA-1:cds;Parent=Msa0261350-mRNA-1
chr2_2 CDS 59674643 59674884 59674643 ID=Msa0261350-mRNA-1:cds;Parent=Msa0261350-mRNA-1
chr2_2 CDS 59675590 59675707 59675590 ID=Msa0261350-mRNA-1:cds;Parent=Msa0261350-mRNA-1
chr2_2 CDS 59675917 59676099 59675917 ID=Msa0261350-mRNA-1:cds;Parent=Msa0261350-mRNA-1
chr2_2 CDS 59676702 59676809 59676702 ID=Msa0261350-mRNA-1:cds;Parent=Msa0261350-mRNA-1
chr2_2 three_prime_UTR 59676810 59677103 59676810 ID=Msa0261350-mRNA-1:three_prime_utr;Parent=Msa0261350-mRNA-1
Gene Sequence

>Msa0261350

ATGTCTTCCACCACTCTATCTCCTGCAACCCCTTCTCAGCTATGTTCTGGAAAGAGTGGAATTTCATGTCCTTCAATAGGATTACTTGTGAAGCCAACAAGGACTCAGATGATTGGTAAAGGTAAGGGAATGAGCATCACTTGCCAGGCTACAGGCATTCCTGCTGATCGTGTACCTGACATGAGTAAGAGAGAGACCTTGAATCTTCTTCTTCTTGGTGCTCTTTCACTTCCTACTGCTGGAATGCTTGTTCCTTATGGATCCTTCCTTGTTCCACCAGGCTCAGGTTCTTCCACTGGTGGTACTGTAGCAAAGGATGCCGTTGGCAATGATGTAGTTGCAGCGGAATGGCTAAAGTCACATGGACCCGGTGACCGTACTCTTACACAAGGATTAAAGGGTGATCCTACCTACCTTGTGGTAGAGAGTGACAGAACACTTGCAACATTTGCAATTAATGCCGTATGCACTCACCTCGGGTGTGTCGTGCCATTTAATCAAGCTGAGAAGAAGTTCATCTGCCCCTGCCATGGATCTCAGTACAATGACCAAGGAAGAGTTGTGAGAGGACCTGCTCCTTTGTCTCTTGCGTTGGCACATTGTGATGTTAGTGTGGATGATGGGAAGGTTGTGTTTGTTCCATGGGTTGAAACAGATTTCAGAACAGGTGATGCTCCATGGTGGTCTTAG

Protein sequence

>Msa0261350

MSSTTLSPATPSQLCSGKSGISCPSIGLLVKPTRTQMIGKGKGMSITCQATGIPADRVPDMSKRETLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVAAEWLKSHGPGDRTLTQGLKGDPTYLVVESDRTLATFAINAVCTHLGCVVPFNQAEKKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVSVDDGKVVFVPWVETDFRTGDAPWWS*