AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1193940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193940 MtrunA17_Chr5g0397621 72.514 895 236 7 27 919 13 899 0.0 1331
Msa1193940 MtrunA17_Chr8g0374321 98.492 597 9 0 25 621 104 700 0.0 1214
Msa1193940 MtrunA17_Chr8g0339181 56.502 892 371 6 26 911 77 957 0.0 980
Msa1193940 MtrunA17_Chr8g0339181 27.273 154 108 2 40 192 15 165 5.16e-12 70.1
Msa1193940 MtrunA17_Chr2g0297051 48.040 893 444 7 25 905 129 1013 0.0 800
Msa1193940 MtrunA17_Chr4g0052521 46.760 926 465 10 7 913 73 989 0.0 797
Msa1193940 MtrunA17_Chr8g0374331 97.984 248 5 0 672 919 1 248 3.85e-167 486
Msa1193940 MtrunA17_Chr8g0374391 97.925 241 5 0 679 919 1 241 6.57e-162 473
Msa1193940 MtrunA17_Chr8g0374371 98.930 187 2 0 358 544 1 187 6.83e-127 382
Msa1193940 MtrunA17_Chr4g0050431 38.915 645 352 10 274 900 287 907 4.26e-126 404
Msa1193940 MtrunA17_Chr3g0136331 35.596 663 380 13 274 906 241 886 1.78e-110 361
Msa1193940 MtrunA17_Chr4g0071991 31.516 587 344 16 323 899 159 697 1.88e-68 247
Msa1193940 MtrunA17_Chr2g0297871 28.694 582 338 16 344 904 22 547 3.04e-68 240
Msa1193940 MtrunA17_Chr4g0053441 27.244 624 393 19 290 880 174 769 5.45e-45 175
Msa1193940 MtrunA17_Chr4g0072131 24.096 581 354 12 382 897 147 705 5.53e-25 112
Msa1193940 MtrunA17_Chr1g0147981 23.941 543 332 10 382 869 161 677 1.01e-24 111
Msa1193940 MtrunA17_Chr8g0335291 24.731 558 336 15 382 880 152 684 1.15e-24 111
Msa1193940 MtrunA17_Chr8g0365021 23.941 543 332 10 382 869 214 730 1.22e-24 111
Msa1193940 MtrunA17_Chr2g0298031 24.453 548 324 11 382 869 149 666 2.68e-24 109
Msa1193940 MtrunA17_Chr1g0148031 23.573 543 334 10 382 869 144 660 3.78e-23 106
Msa1193940 MtrunA17_Chr6g0452721 24.596 557 339 15 382 880 146 679 4.04e-23 106
Msa1193940 MtrunA17_Chr3g0138931 23.573 543 334 10 382 869 144 660 1.22e-22 104
Msa1193940 MtrunA17_Chr2g0333721 24.364 550 320 13 382 861 142 665 9.34e-22 101
Msa1193940 MtrunA17_Chr5g0401211 33.898 177 88 3 714 861 649 825 3.21e-21 100
Msa1193940 MtrunA17_Chr2g0304941 23.713 544 317 13 382 858 145 657 5.66e-21 99.0
Msa1193940 MtrunA17_Chr3g0134771 33.523 176 89 3 714 861 652 827 1.51e-20 97.8
Msa1193940 MtrunA17_Chr4g0059961 22.792 566 338 13 382 880 148 681 2.51e-20 97.1
Msa1193940 MtrunA17_Chr4g0054021 32.768 177 90 3 714 861 572 748 6.54e-20 95.9
Msa1193940 MtrunA17_Chr7g0276551 25.060 415 234 12 530 880 41 442 1.31e-18 91.3
Msa1193940 MtrunA17_Chr4g0020551 32.768 177 91 3 713 861 584 760 1.85e-18 90.9
Msa1193940 MtrunA17_Chr8g0382071 31.667 180 94 3 713 863 648 827 2.08e-17 87.8
Msa1193940 MtrunA17_Chr8g0340261 29.508 183 97 3 713 863 193 375 2.32e-17 86.7
Msa1193940 MtrunA17_Chr4g0002331 27.830 212 115 4 687 863 684 892 2.68e-17 87.4
Msa1193940 MtrunA17_Chr2g0298871 27.717 184 100 2 713 863 696 879 3.35e-17 87.0
Msa1193940 MtrunA17_Chr1g0173111 31.461 178 93 3 713 861 645 822 6.73e-17 85.9
Msa1193940 MtrunA17_Chr6g0456201 29.032 186 100 3 710 863 638 823 7.03e-17 85.9
Msa1193940 MtrunA17_Chr7g0263361 27.004 237 117 4 659 858 586 803 1.40e-16 85.1
Msa1193940 MtrunA17_Chr7g0260401 27.568 185 100 2 713 863 672 856 2.03e-16 84.3
Msa1193940 MtrunA17_Chr4g0065481 30.319 188 94 2 712 869 481 661 7.57e-16 82.4
Msa1193940 MtrunA17_Chr8g0381711 29.412 187 105 3 684 843 486 672 1.24e-15 81.6
Msa1193940 MtrunA17_Chr3g0134951 26.904 197 110 2 710 872 580 776 9.66e-15 79.0
Msa1193940 MtrunA17_Chr8g0346461 30.178 169 84 3 713 847 619 787 1.38e-14 78.6
Msa1193940 MtrunA17_Chr8g0355421 30.488 164 85 3 713 847 639 802 6.99e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193940 AT1G63440.1 72.049 898 240 6 26 919 103 993 0.0 1330
Msa1193940 AT1G63440.1 26.994 163 103 4 33 190 40 191 7.27e-11 67.0
Msa1193940 AT5G44790.1 48.226 902 444 7 25 913 107 998 0.0 818
Msa1193940 AT5G21930.2 35.407 675 376 16 274 911 232 883 1.61e-115 375
Msa1193940 AT5G21930.1 35.407 675 376 16 274 911 232 883 1.61e-115 375
Msa1193940 AT4G33520.2 38.378 641 357 13 274 900 300 916 5.51e-113 369
Msa1193940 AT4G33520.3 38.378 641 357 13 274 900 300 916 7.28e-113 369
Msa1193940 AT5G21930.3 34.074 675 362 17 274 911 232 860 8.13e-104 343
Msa1193940 AT5G21930.4 33.838 594 337 15 274 832 232 804 1.04e-89 303
Msa1193940 AT4G30110.1 29.545 660 400 18 258 906 95 700 4.27e-71 254
Msa1193940 AT4G30110.2 29.545 660 400 18 258 906 95 700 4.27e-71 254
Msa1193940 AT2G19110.2 29.951 611 362 19 324 915 166 729 1.28e-63 234
Msa1193940 AT2G19110.3 29.951 611 362 19 324 915 166 729 1.28e-63 234
Msa1193940 AT2G19110.1 29.951 611 362 19 324 915 166 729 1.28e-63 234
Msa1193940 AT4G30120.2 30.812 357 213 11 324 678 3 327 9.34e-41 155
Msa1193940 AT4G30120.1 30.812 357 213 11 324 678 162 486 7.98e-40 155
Msa1193940 AT4G37270.1 27.769 605 367 20 314 880 192 764 1.16e-39 159
Msa1193940 AT1G17260.1 24.680 547 323 11 381 861 149 672 1.18e-27 121
Msa1193940 AT3G60330.4 25.089 562 327 18 382 880 145 675 4.15e-25 112
Msa1193940 AT3G60330.3 25.089 562 327 18 382 880 145 675 4.15e-25 112
Msa1193940 AT3G60330.2 24.911 562 328 18 382 880 145 675 8.69e-25 112
Msa1193940 AT3G60330.1 24.911 562 328 18 382 880 145 675 8.69e-25 112
Msa1193940 AT3G47950.1 24.776 557 338 16 382 880 150 683 1.12e-22 105
Msa1193940 AT3G47950.2 24.776 557 338 16 382 880 150 683 1.12e-22 105
Msa1193940 AT5G62670.1 24.237 557 341 16 382 880 146 679 1.57e-22 104
Msa1193940 AT2G18960.1 24.324 555 315 14 382 869 142 658 3.62e-22 103
Msa1193940 AT2G18960.3 24.324 555 315 14 382 869 78 594 4.21e-22 103
Msa1193940 AT2G18960.2 24.324 555 315 14 382 869 78 594 4.21e-22 103
Msa1193940 AT3G42640.1 24.561 570 327 19 379 880 144 678 5.37e-22 102
Msa1193940 AT2G24520.3 23.886 561 310 16 382 869 124 640 8.81e-21 99.0
Msa1193940 AT2G24520.1 23.886 561 310 16 382 869 124 640 8.81e-21 99.0
Msa1193940 AT2G24520.2 23.886 561 310 16 382 869 187 703 9.43e-21 99.0
Msa1193940 AT4G29900.1 22.801 614 353 14 370 863 249 861 1.61e-20 98.2
Msa1193940 AT4G29900.2 22.801 614 353 14 370 863 249 861 1.61e-20 98.2
Msa1193940 AT4G37640.1 32.768 177 90 3 714 861 649 825 6.90e-20 96.3
Msa1193940 AT1G27770.4 32.768 177 90 3 714 861 652 828 2.91e-19 94.0
Msa1193940 AT1G27770.1 32.768 177 90 3 714 861 652 828 2.91e-19 94.0
Msa1193940 AT1G27770.3 32.768 177 90 3 714 861 589 765 3.02e-19 94.0
Msa1193940 AT2G41560.2 32.402 179 93 2 713 863 541 719 3.47e-19 94.0
Msa1193940 AT2G41560.3 32.402 179 93 2 713 863 541 719 3.47e-19 94.0
Msa1193940 AT2G41560.4 32.402 179 93 2 713 863 541 719 3.47e-19 94.0
Msa1193940 AT3G57330.1 32.402 179 93 2 713 863 640 818 3.59e-19 94.0
Msa1193940 AT2G41560.1 32.402 179 93 2 713 863 643 821 3.76e-19 94.0
Msa1193940 AT3G57330.2 32.402 179 93 2 713 863 585 763 3.93e-19 93.6
Msa1193940 AT2G22950.1 31.638 177 92 3 714 861 650 826 4.09e-19 93.6
Msa1193940 AT3G21180.1 28.261 184 99 2 713 863 691 874 1.63e-17 88.6
Msa1193940 AT5G57110.1 27.717 184 100 2 713 863 674 857 3.55e-17 87.4
Msa1193940 AT5G57110.3 27.717 184 100 2 713 863 674 857 3.55e-17 87.4
Msa1193940 AT5G57110.2 27.717 184 100 2 713 863 674 857 3.55e-17 87.4
Msa1193940 AT2G24520.4 25.243 412 210 11 530 869 12 397 1.50e-16 85.1
Msa1193940 AT5G57350.3 31.915 188 91 3 712 869 217 397 1.68e-16 84.7
Msa1193940 AT1G07670.2 27.528 178 97 2 713 858 621 798 1.70e-16 85.1
Msa1193940 AT1G07670.1 27.528 178 97 2 713 858 621 798 1.70e-16 85.1
Msa1193940 AT1G07810.1 27.528 178 97 2 713 858 621 798 1.95e-16 85.1
Msa1193940 AT4G30190.1 31.915 188 91 2 712 869 478 658 2.30e-16 84.7
Msa1193940 AT5G57350.4 31.915 188 91 3 712 869 479 659 2.58e-16 84.7
Msa1193940 AT5G57350.2 31.915 188 91 3 712 869 479 659 2.58e-16 84.7
Msa1193940 AT5G57350.1 31.915 188 91 3 712 869 479 659 2.58e-16 84.7
Msa1193940 AT3G22910.1 28.261 184 99 2 713 863 636 819 7.14e-16 83.2
Msa1193940 AT1G10130.1 27.451 204 110 3 707 872 572 775 8.98e-16 82.8
Msa1193940 AT3G63380.1 27.451 204 114 3 694 863 620 823 1.49e-15 82.0
Msa1193940 AT2G07560.1 31.250 176 92 1 712 858 481 656 1.50e-15 82.0
Msa1193940 AT1G80660.2 29.944 177 94 1 712 858 354 530 2.29e-14 78.2
Msa1193940 AT1G80660.1 29.944 177 94 1 712 858 483 659 2.95e-14 77.8
Msa1193940 AT1G80660.3 29.944 177 94 1 712 858 483 659 3.33e-14 77.8
Msa1193940 AT1G80660.4 29.944 177 94 1 712 858 483 659 3.48e-14 77.8
Msa1193940 AT4G00900.2 28.994 169 86 3 713 847 615 783 8.98e-14 76.3
Msa1193940 AT4G00900.1 28.994 169 86 3 713 847 615 783 8.98e-14 76.3
Msa1193940 AT4G30190.2 41.414 99 51 1 771 869 600 691 3.70e-12 71.2

Find 179 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCAATTGTTGCAGTATT+TGG 0.098139 8_1:+40835438 Msa1193940:CDS
GAAGATGGTATCCATGATTT+TGG 0.127712 8_1:-40838541 None:intergenic
GATACTTTAAATTATTAATT+TGG 0.147332 8_1:+40837249 Msa1193940:CDS
TACTATTGGAACAAAGTATT+TGG 0.149803 8_1:-40838056 None:intergenic
TTCCCCTTTGCTTATTAATA+TGG 0.161916 8_1:-40836958 None:intergenic
CTAAATTACATTTGGGCTTT+AGG 0.167127 8_1:+40840745 Msa1193940:CDS
AAATCTGGTCAGCATATTTC+TGG 0.175185 8_1:-40838033 None:intergenic
CATGGCTCAAACAGGAATTT+TGG 0.195063 8_1:+40839589 Msa1193940:CDS
ACCTTTGCTCAAAGCTTTAT+AGG 0.215149 8_1:-40837447 None:intergenic
TGGGGAAATTGTTGGAGTTT+TGG 0.216418 8_1:+40839622 Msa1193940:CDS
TTCTATTCTGTTTATGTTGT+TGG 0.237087 8_1:+40837518 Msa1193940:CDS
TAATGGTGACAGGTGATAAT+TGG 0.244399 8_1:+40839717 Msa1193940:CDS
TTCTGATTCGGCTAAGCTTA+TGG 0.249809 8_1:+40835396 Msa1193940:CDS
TAAATTATTAATTTGGAGTT+TGG 0.252288 8_1:+40837256 Msa1193940:CDS
TATTCTACTTGGCAAGTATT+TGG 0.258143 8_1:+40837610 Msa1193940:CDS
CTGAATAACTTGGAGATTAA+TGG 0.264775 8_1:+40840925 Msa1193940:CDS
TGAGTGTAGGTTATAATCTT+TGG 0.269067 8_1:-40836900 None:intergenic
ATTGTCAATATGTTGAATAT+TGG 0.273141 8_1:+40837356 Msa1193940:CDS
ATGAGTTCAATGAAGGTTCT+TGG 0.287670 8_1:-40837140 None:intergenic
TATACTTGGTGGCAGAATTC+TGG 0.290037 8_1:+40840532 Msa1193940:intron
TACTAAAGTAAAGGAATTAC+AGG 0.304850 8_1:+40839814 Msa1193940:CDS
GAACAAAGTATTTGGAAATC+TGG 0.307030 8_1:-40838048 None:intergenic
AAAATTGAACTTAAAATTGA+TGG 0.308965 8_1:+40836990 Msa1193940:CDS
ACTATCATCTTCCATGGATT+TGG 0.319744 8_1:-40836721 None:intergenic
TCTTATGAAGAGTAACTTAG+AGG 0.322084 8_1:+40840672 Msa1193940:CDS
AATGTCTAAATATGTTTCTA+TGG 0.322277 8_1:-40837078 None:intergenic
CTCTTTCAACATGGATATCA+TGG 0.327399 8_1:+40838491 Msa1193940:CDS
GTTCTTGGACCAGTCATATA+AGG 0.332926 8_1:-40837125 None:intergenic
ATTGAACTCATTGAATCTTC+AGG 0.339049 8_1:+40837152 Msa1193940:CDS
AAAGAATTTGTGTCTATTGC+AGG 0.339636 8_1:+40839446 Msa1193940:CDS
ATAGCTTGTCCTTGTGCTCT+AGG 0.346551 8_1:+40838613 Msa1193940:CDS
TCCCCTTTGCTTATTAATAT+GGG 0.351772 8_1:-40836957 None:intergenic
TGTTCAAAACAAGGAAATAA+TGG 0.352157 8_1:+40839487 Msa1193940:CDS
GTTAGTAAGGTTGCTGTATC+AGG 0.355494 8_1:-40837689 None:intergenic
ATTTGGAAGTGTTGGCTAAA+GGG 0.358609 8_1:+40837627 Msa1193940:CDS
TCAACAATGGACTTTGCTAT+TGG 0.359587 8_1:-40839368 None:intergenic
TTTGAGCTTGCACTTCAGTT+TGG 0.367139 8_1:+40838574 Msa1193940:CDS
ATATCATTGAACAATCTCTT+AGG 0.367455 8_1:+40837036 Msa1193940:CDS
CTCATTGAATCTTCAGGATC+AGG 0.369788 8_1:+40837158 Msa1193940:CDS
TATACGTCTAAATTACATTT+GGG 0.371723 8_1:+40840738 Msa1193940:CDS
AAGACAGGAACTCTGACTAT+TGG 0.375068 8_1:+40838849 Msa1193940:CDS
AATGGTGACAGGTGATAATT+GGG 0.389397 8_1:+40839718 Msa1193940:CDS
ACTAACTCTTGATGATGATA+AGG 0.390882 8_1:+40837706 Msa1193940:CDS
GTATACGTCTAAATTACATT+TGG 0.391057 8_1:+40840737 Msa1193940:CDS
TATAACCTACACTCAACTAA+TGG 0.394905 8_1:+40836908 Msa1193940:CDS
ATCATCATCAAGAGTTAGTA+AGG 0.402245 8_1:-40837702 None:intergenic
ACTTTAGTAGCTTTAGTCTC+AGG 0.403729 8_1:-40839800 None:intergenic
CATGGATTTGTTGATAGCAT+TGG 0.403773 8_1:+40837478 Msa1193940:CDS
ATGGATTTGTTGATAGCATT+GGG 0.405336 8_1:+40837479 Msa1193940:CDS
GATGATAAGGGAAATGTTAT+AGG 0.408930 8_1:+40837719 Msa1193940:CDS
CTAACTCTTGATGATGATAA+GGG 0.413373 8_1:+40837707 Msa1193940:CDS
TGAATATTGGATTGCTCATA+AGG 0.413770 8_1:+40837369 Msa1193940:CDS
AAAAGTATGCCAGCAGCAAT+AGG 0.418214 8_1:-40840787 None:intergenic
TCATAACATAGCTATTTCAT+TGG 0.421787 8_1:+40839535 Msa1193940:CDS
TCACCCTTCATCTTAGCAAC+AGG 0.422708 8_1:-40837881 None:intergenic
ATCCCATATTAATAAGCAAA+GGG 0.425227 8_1:+40836955 Msa1193940:CDS
AGACAGGAACTCTGACTATT+GGG 0.427560 8_1:+40838850 Msa1193940:CDS
CTAGCCATTCCTATTGCTGC+TGG 0.431313 8_1:+40840778 Msa1193940:CDS
GGTAACCTAAATCTAGTAGA+AGG 0.435103 8_1:-40840811 None:intergenic
ACACCGGTACAGTTTGTCAT+AGG 0.443143 8_1:+40837404 Msa1193940:CDS
TATTTGAAACGAAGTGTTGT+TGG 0.443830 8_1:-40836745 None:intergenic
TGCTAAGATGAAGGGTGATA+TGG 0.444253 8_1:+40837886 Msa1193940:CDS
AAAATCACTTCCTTCAAAAT+GGG 0.444783 8_1:-40837558 None:intergenic
TGCATTGTGTTTGATAAGAC+AGG 0.453034 8_1:+40838834 Msa1193940:CDS
TTCTGCTTCTTCAGTTGCTA+AGG 0.455731 8_1:-40836865 None:intergenic
CATGTTAAGGTGACAAGGGT+TGG 0.456643 8_1:+40837944 Msa1193940:CDS
CATTGAAGATGCTGGATTTG+AGG 0.464702 8_1:+40836698 Msa1193940:CDS
TTGGATTGCTGGAGCTGCAA+TGG 0.464751 8_1:+40840837 Msa1193940:CDS
GCTGAAAACATGGCTCAAAC+AGG 0.465875 8_1:+40839581 Msa1193940:CDS
TGCATTCATACCCAAAATCA+TGG 0.468723 8_1:+40838530 Msa1193940:CDS
GCCTATAAAGCTTTGAGCAA+AGG 0.468765 8_1:+40837446 Msa1193940:CDS
AAAGAAAATAAAGAGCATAA+TGG 0.469550 8_1:+40839700 Msa1193940:CDS
GCCACAATATTTCCAAATGA+TGG 0.473095 8_1:+40837191 Msa1193940:CDS
TGTGTGCACTTTCTAATGCT+TGG 0.473648 8_1:-40838708 None:intergenic
TATTTGGAAGTGTTGGCTAA+AGG 0.475035 8_1:+40837626 Msa1193940:CDS
GTTGGAATGGCAATTGGTGC+TGG 0.477758 8_1:+40840616 Msa1193940:CDS
CAGCTCTTCAATCCCTTCGT+GGG 0.479337 8_1:+40836823 Msa1193940:CDS
TGGCAAGTATTTGGAAGTGT+TGG 0.481436 8_1:+40837619 Msa1193940:CDS
CTCAAATCCAGCATCTTCAA+TGG 0.486228 8_1:-40836697 None:intergenic
TCAGCTCTTCAATCCCTTCG+TGG 0.486525 8_1:+40836822 Msa1193940:CDS
GCACTAGTAGCAGCTGATGT+TGG 0.489521 8_1:+40840598 Msa1193940:CDS
TGGATATCATGGTTTGTAGC+TGG 0.490244 8_1:+40838502 Msa1193940:CDS
TGGTTCTTATGTATATACCT+GGG 0.491603 8_1:+40837309 Msa1193940:CDS
GTTGGAACTATCATCTTCCA+TGG 0.493276 8_1:-40836727 None:intergenic
TCCAAGTTATTCAGCTTGGT+TGG 0.493343 8_1:-40840916 None:intergenic
AATCTCCAAGTTATTCAGCT+TGG 0.494811 8_1:-40840920 None:intergenic
TGCTATTTGCACCCCACGAA+GGG 0.498106 8_1:-40836835 None:intergenic
ACCAACCAAGCTGAATAACT+TGG 0.498362 8_1:+40840915 Msa1193940:CDS
CGTGAGGCCATTGAAGATGC+TGG 0.500885 8_1:+40836690 Msa1193940:CDS
ACCATCATTTGGAAATATTG+TGG 0.502032 8_1:-40837192 None:intergenic
ACTTATAAACCTTATATGAC+TGG 0.504265 8_1:+40837116 Msa1193940:CDS
AATTCTATTGCTAGACAAGC+TGG 0.504479 8_1:+40839749 Msa1193940:CDS
TCATTGGATGGGGAAATTGT+TGG 0.506185 8_1:+40839614 Msa1193940:CDS
ACTTGTTGAGTCTGCTCAGA+TGG 0.506554 8_1:+40837997 Msa1193940:CDS
AAGAGCTGATTGCACATTGG+AGG 0.507470 8_1:-40836808 None:intergenic
GCTGATGTTGGAATGGCAAT+TGG 0.508224 8_1:+40840610 Msa1193940:CDS
TCAAAACTATTCATAGAAGA+TGG 0.509674 8_1:-40838556 None:intergenic
AAAGCCTGTTGCTAAGATGA+AGG 0.510906 8_1:+40837877 Msa1193940:CDS
AGCCACTCCTACAGCGGTCA+TGG 0.513949 8_1:+40838639 Msa1193940:CDS
ATGAAGGGTGATATGGTGAT+TGG 0.516775 8_1:+40837893 Msa1193940:CDS
TGGTCAGCATATTTCTGGAC+AGG 0.518694 8_1:-40838028 None:intergenic
GTGAAAGAGAAATTGATAGC+AGG 0.519960 8_1:+40837741 Msa1193940:CDS
GTCATGGTTGGTACCGGAGT+TGG 0.522797 8_1:+40838655 Msa1193940:CDS
GTAAATGAGAGTATGATAAC+TGG 0.523529 8_1:+40837848 Msa1193940:CDS
GGATACACTGTAGGAATGGT+AGG 0.525626 8_1:+40840553 Msa1193940:CDS
AGATTCAATGAGTTCAATGA+AGG 0.527436 8_1:-40837147 None:intergenic
GACTAAAGCTACTAAAGTAA+AGG 0.529942 8_1:+40839805 Msa1193940:CDS
TGTGTCTGATCCATTGAAAC+CGG 0.530867 8_1:+40839646 Msa1193940:CDS
TTTCTATGGTTTCAACACCT+TGG 0.531148 8_1:-40837064 None:intergenic
ATTGCAGCTCCAGCAATCCA+AGG 0.533220 8_1:-40840835 None:intergenic
ACAGCGGTCATGGTTGGTAC+CGG 0.534259 8_1:+40838649 Msa1193940:CDS
ATGGTTCTTATGTATATACC+TGG 0.535608 8_1:+40837308 Msa1193940:CDS
CAAAACAAGGAAATAATGGT+TGG 0.535760 8_1:+40839491 Msa1193940:CDS
TTGTTGCTGCAGCAGAGGCA+AGG 0.537822 8_1:+40838934 Msa1193940:CDS
ACATCAGCTGCTACTAGTGC+TGG 0.539899 8_1:-40840595 None:intergenic
TGATGTGATCAAAGTTGTGC+CGG 0.544422 8_1:+40837778 Msa1193940:CDS
GCAGGCTATTGCGAAACTCA+TGG 0.545601 8_1:+40837658 Msa1193940:CDS
ATAAAGAGCATAATGGTGAC+AGG 0.549153 8_1:+40839707 Msa1193940:CDS
AGTTTCCATTAGTTGAGTGT+AGG 0.555320 8_1:-40836913 None:intergenic
GGCTAAAGGGAAAACATCGC+AGG 0.555402 8_1:+40837640 Msa1193940:CDS
TTCTGGATACACTGTAGGAA+TGG 0.557596 8_1:+40840549 Msa1193940:CDS
AATCCCATATTAATAAGCAA+AGG 0.557696 8_1:+40836954 Msa1193940:CDS
CAGAATTCTGGATACACTGT+AGG 0.561507 8_1:+40840544 Msa1193940:intron
ATGAACAAAATCATTCATCA+TGG 0.562767 8_1:+40839414 Msa1193940:CDS
TTGCAGCTCCAGCAATCCAA+GGG 0.565670 8_1:-40840834 None:intergenic
TCAGTTTGGAATTTCAGTCA+TGG 0.566870 8_1:+40838588 Msa1193940:CDS
GTGGCTAGGCCTAGAGCACA+AGG 0.569251 8_1:-40838622 None:intergenic
ACCTTGAGTTGCACCAACTC+CGG 0.571323 8_1:-40838668 None:intergenic
GAGCAAAGGTTATGCAAACA+TGG 0.571538 8_1:+40837460 Msa1193940:CDS
TATTGGATTGCTCATAAGGT+GGG 0.575330 8_1:+40837373 Msa1193940:CDS
TTTGTGTCTATTGCAGGACA+TGG 0.575380 8_1:+40839452 Msa1193940:CDS
ACCGGAGTTGGTGCAACTCA+AGG 0.578148 8_1:+40838667 Msa1193940:CDS
TTGTGTTATCTCTTTCAACA+TGG 0.578715 8_1:+40838482 Msa1193940:CDS
AGCATTAGAAAGTGCACACA+AGG 0.580174 8_1:+40838711 Msa1193940:CDS
GGTGGTACTGTGAATGAGAA+TGG 0.580964 8_1:+40837914 Msa1193940:CDS
ACTAGCAGAAGCTGAAAACA+TGG 0.583541 8_1:+40839571 Msa1193940:CDS
AGTAGCAGCTGATGTTGGAA+TGG 0.584059 8_1:+40840603 Msa1193940:CDS
AAGGGTGATATGGTGATTGG+TGG 0.590370 8_1:+40837896 Msa1193940:CDS
CTTCCTATGACAAACTGTAC+CGG 0.598308 8_1:-40837407 None:intergenic
TCATTGAATCTTCAGGATCA+GGG 0.598992 8_1:+40837159 Msa1193940:CDS
AACCATGACCGCTGTAGGAG+TGG 0.599538 8_1:-40838641 None:intergenic
ACAATATTTCCAAATGATGG+TGG 0.600705 8_1:+40837194 Msa1193940:CDS
AAGCCTGTTGCTAAGATGAA+GGG 0.600773 8_1:+40837878 Msa1193940:CDS
TTGAAGAGCTGATTGCACAT+TGG 0.601857 8_1:-40836811 None:intergenic
TGACCGCTGTAGGAGTGGCT+AGG 0.602822 8_1:-40838636 None:intergenic
TGGATTTGAGGCCAAATCCA+TGG 0.603953 8_1:+40836710 Msa1193940:CDS
TCTAAAACATCTTTAACCCC+AGG 0.606301 8_1:-40837326 None:intergenic
TGAACTTGTTGCTGCAGCAG+AGG 0.606446 8_1:+40838929 Msa1193940:CDS
GGTTCTTATGTATATACCTG+GGG 0.606705 8_1:+40837310 Msa1193940:CDS
TGGGGTGCAAATAGCACAAG+TGG 0.611430 8_1:+40836842 Msa1193940:CDS
ACTGTAGGAATGGTAGGAGA+TGG 0.612600 8_1:+40840559 Msa1193940:CDS
CAAGGTGTGTTGATCAAAGG+TGG 0.614870 8_1:+40838685 Msa1193940:CDS
ACTCCTACAGCGGTCATGGT+TGG 0.617392 8_1:+40838643 Msa1193940:CDS
TCTGATGCTACTTTCGCGCC+CGG 0.621662 8_1:-40837797 None:intergenic
TATTGAAACTGTCATGGCTG+AGG 0.621886 8_1:+40839772 Msa1193940:CDS
GGCGCGAAAGTAGCATCAGA+TGG 0.625314 8_1:+40837800 Msa1193940:CDS
GATGTGATCAAAGTTGTGCC+GGG 0.629015 8_1:+40837779 Msa1193940:CDS
GTGCTATTTGCACCCCACGA+AGG 0.629621 8_1:-40836836 None:intergenic
ATATTGGATTGCTCATAAGG+TGG 0.629989 8_1:+40837372 Msa1193940:CDS
AGCTCTTCAATCCCTTCGTG+GGG 0.630501 8_1:+40836824 Msa1193940:CDS
AAGAAAAGCACATAAACAAG+AGG 0.631153 8_1:+40837217 Msa1193940:CDS
GTACCAACCATGACCGCTGT+AGG 0.635820 8_1:-40838646 None:intergenic
CAAATATGTAGAGTACACAT+AGG 0.636295 8_1:+40836762 Msa1193940:CDS
TATTGCAGGACATGGAGTGA+AGG 0.637874 8_1:+40839460 Msa1193940:CDS
TATGCCAGCAGCAATAGGAA+TGG 0.645015 8_1:-40840782 None:intergenic
GAAGGCAGTTGTTCAAAACA+AGG 0.645068 8_1:+40839478 Msa1193940:CDS
AGGCCTAGCCACTCCTACAG+CGG 0.649430 8_1:+40838633 Msa1193940:CDS
CAATCTCTTAGGACACTCCA+AGG 0.653190 8_1:+40837047 Msa1193940:CDS
ACTCAAGGTGTGTTGATCAA+AGG 0.657349 8_1:+40838682 Msa1193940:CDS
ATGGAAACTATATCAAACAC+AGG 0.661215 8_1:+40836927 Msa1193940:CDS
AGCTGGTATTGAAACTGTCA+TGG 0.661486 8_1:+40839766 Msa1193940:CDS
TCCCATATTAATAAGCAAAG+GGG 0.670647 8_1:+40836956 Msa1193940:CDS
TTTGCATGTTAAGGTGACAA+GGG 0.685743 8_1:+40837940 Msa1193940:CDS
ATATGTAGAGTACACATAGG+TGG 0.685983 8_1:+40836765 Msa1193940:CDS
TCTGACTATTGGGAAGCCAG+TGG 0.686617 8_1:+40838860 Msa1193940:CDS
ACAGGAAGAGAGCATACGTG+AGG 0.715485 8_1:+40836674 Msa1193940:intron
TGCAGCTCCAGCAATCCAAG+GGG 0.715856 8_1:-40840833 None:intergenic
GCAGCTCCAGCAATCCAAGG+GGG 0.765481 8_1:-40840832 None:intergenic
ATGGTGACAGGTGATAATTG+GGG 0.767964 8_1:+40839719 Msa1193940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTATTTAAATTAATTT+TGG + chr8_1:40838140-40838159 Msa1193940:intron 0.0%
!!! AATAGTATTTAGTATATTTT+AGG - chr8_1:40835687-40835706 None:intergenic 10.0%
!!! TACTAAATACTATTTTTTTT+AGG + chr8_1:40835693-40835712 Msa1193940:intron 10.0%
!!! TATTGATTTTCTTTTTTTTT+TGG + chr8_1:40835889-40835908 Msa1193940:intron 10.0%
!!! TATATTTTTTTAGTAGATAA+CGG + chr8_1:40836603-40836622 Msa1193940:intron 10.0%
!! GATACTTTAAATTATTAATT+TGG + chr8_1:40837249-40837268 Msa1193940:CDS 10.0%
!!! ATTATTTAAATTAATTTTGG+AGG + chr8_1:40838143-40838162 Msa1193940:intron 10.0%
!! ATTCTATTATTTGAATTAAA+TGG - chr8_1:40838420-40838439 None:intergenic 10.0%
!! ATATACTATATAGATTAAAT+TGG + chr8_1:40839159-40839178 Msa1193940:intron 10.0%
!! TATACTATATAGATTAAATT+GGG + chr8_1:40839160-40839179 Msa1193940:intron 10.0%
!! CTTAAAAAAAAAAAATTGTA+TGG + chr8_1:40840457-40840476 Msa1193940:intron 10.0%
!! TATTGTCTAAATATTATATA+GGG - chr8_1:40840500-40840519 None:intergenic 10.0%
!! TTATTGTCTAAATATTATAT+AGG - chr8_1:40840501-40840520 None:intergenic 10.0%
!! AGAAAAACAATACTTAAAAA+GGG - chr8_1:40835613-40835632 None:intergenic 15.0%
!! AAGAAAAACAATACTTAAAA+AGG - chr8_1:40835614-40835633 None:intergenic 15.0%
!!! GTAATTTGTTTTTTTTTTGT+TGG - chr8_1:40836060-40836079 None:intergenic 15.0%
!! AATATAAATATGCCAATTAT+AGG - chr8_1:40836589-40836608 None:intergenic 15.0%
!! AAAATTGAACTTAAAATTGA+TGG + chr8_1:40836990-40837009 Msa1193940:CDS 15.0%
!!! TAAATTATTAATTTGGAGTT+TGG + chr8_1:40837256-40837275 Msa1193940:CDS 15.0%
!! TTAAAAGATCAAAATCATAT+TGG - chr8_1:40838118-40838137 None:intergenic 15.0%
!! ATAGTTATATCTATATGATT+AGG + chr8_1:40839331-40839350 Msa1193940:intron 15.0%
!! AATCTAAACAAAATATTTAG+AGG + chr8_1:40840150-40840169 Msa1193940:intron 15.0%
!! ATCTAAACAAAATATTTAGA+GGG + chr8_1:40840151-40840170 Msa1193940:intron 15.0%
!! TAATATTTGACATATATACT+TGG + chr8_1:40840518-40840537 Msa1193940:intron 15.0%
!!! CAATTAAAATGAAACAGTTT+TGG - chr8_1:40835638-40835657 None:intergenic 20.0%
!! ATTCCAAAAAAAGTTATCAT+GGG - chr8_1:40836162-40836181 None:intergenic 20.0%
!!! AATGTCTAAATATGTTTCTA+TGG - chr8_1:40837081-40837100 None:intergenic 20.0%
!! ATTGTCAATATGTTGAATAT+TGG + chr8_1:40837356-40837375 Msa1193940:CDS 20.0%
!!! CTTATTTCTTTTATTCTACT+TGG + chr8_1:40837599-40837618 Msa1193940:CDS 20.0%
!! TAGTAATTTAGACTTACTAT+TGG - chr8_1:40838073-40838092 None:intergenic 20.0%
!!! AGAATTGATTTTAACATGTT+TGG - chr8_1:40838194-40838213 None:intergenic 20.0%
!! TTAGTCTATTTGGAAATTAA+TGG + chr8_1:40839273-40839292 Msa1193940:intron 20.0%
!!! AAAGAAAATAAAGAGCATAA+TGG + chr8_1:40839700-40839719 Msa1193940:CDS 20.0%
!! TACAGGTATATACAAAATTA+TGG + chr8_1:40839831-40839850 Msa1193940:intron 20.0%
!!! ATAGGACATTTATTCAATTT+TGG + chr8_1:40839923-40839942 Msa1193940:intron 20.0%
!!! TCTCAACAAAAAATTTTACA+AGG - chr8_1:40839996-40840015 None:intergenic 20.0%
!! TATACGTCTAAATTACATTT+GGG + chr8_1:40840738-40840757 Msa1193940:CDS 20.0%
! AACAATACTTAAAAAGGGAA+CGG - chr8_1:40835608-40835627 None:intergenic 25.0%
! TACCTCAAAATATAATCTAG+AGG + chr8_1:40836077-40836096 Msa1193940:intron 25.0%
!! TTCCTCTAGATTATATTTTG+AGG - chr8_1:40836082-40836101 None:intergenic 25.0%
! AAAAAAAGTTATCATGGGAA+TGG - chr8_1:40836157-40836176 None:intergenic 25.0%
!!! ATTCCCATGATAACTTTTTT+TGG + chr8_1:40836156-40836175 Msa1193940:intron 25.0%
! GATTCCAAAAAAAGTTATCA+TGG - chr8_1:40836163-40836182 None:intergenic 25.0%
!!! TAAGAGGAATTCTTTTGATT+TGG - chr8_1:40836267-40836286 None:intergenic 25.0%
! ACAAAATATATGCGTTGTTA+TGG - chr8_1:40836652-40836671 None:intergenic 25.0%
! AATCCCATATTAATAAGCAA+AGG + chr8_1:40836954-40836973 Msa1193940:CDS 25.0%
! ATCCCATATTAATAAGCAAA+GGG + chr8_1:40836955-40836974 Msa1193940:CDS 25.0%
! ATATCATTGAACAATCTCTT+AGG + chr8_1:40837036-40837055 Msa1193940:CDS 25.0%
! ACTTATAAACCTTATATGAC+TGG + chr8_1:40837116-40837135 Msa1193940:CDS 25.0%
!!! TCCTGTTTTTTTAACATCTA+TGG + chr8_1:40837289-40837308 Msa1193940:CDS 25.0%
! ACCATAGATGTTAAAAAAAC+AGG - chr8_1:40837293-40837312 None:intergenic 25.0%
!! ATAGGAAGAAGATTTTATGT+TGG + chr8_1:40837422-40837441 Msa1193940:CDS 25.0%
! TTCTATTCTGTTTATGTTGT+TGG + chr8_1:40837518-40837537 Msa1193940:CDS 25.0%
! AAAATCACTTCCTTCAAAAT+GGG - chr8_1:40837561-40837580 None:intergenic 25.0%
! AAAAATCACTTCCTTCAAAA+TGG - chr8_1:40837562-40837581 None:intergenic 25.0%
!! TACTATTGGAACAAAGTATT+TGG - chr8_1:40838059-40838078 None:intergenic 25.0%
! AAAGATCAAAATCATATTGG+AGG - chr8_1:40838115-40838134 None:intergenic 25.0%
!!! ATTGATTTTAACATGTTTGG+AGG - chr8_1:40838191-40838210 None:intergenic 25.0%
!!! TCTAGTTTTTGCAAAAATCA+CGG - chr8_1:40838316-40838335 None:intergenic 25.0%
! TCAAAACTATTCATAGAAGA+TGG - chr8_1:40838559-40838578 None:intergenic 25.0%
!! GACAGATTTTATACACTTTA+CGG - chr8_1:40839034-40839053 None:intergenic 25.0%
!! TACTTTAGAGATTAAAACGA+TGG + chr8_1:40839106-40839125 Msa1193940:intron 25.0%
!! TTCATCTTGTGTGATATTTT+TGG - chr8_1:40839399-40839418 None:intergenic 25.0%
! ATGAACAAAATCATTCATCA+TGG + chr8_1:40839414-40839433 Msa1193940:CDS 25.0%
! TGTTCAAAACAAGGAAATAA+TGG + chr8_1:40839487-40839506 Msa1193940:CDS 25.0%
!! TCATAACATAGCTATTTCAT+TGG + chr8_1:40839535-40839554 Msa1193940:CDS 25.0%
! TACTAAAGTAAAGGAATTAC+AGG + chr8_1:40839814-40839833 Msa1193940:CDS 25.0%
!! TTTAAGACTTTGTTCACTAT+AGG + chr8_1:40839905-40839924 Msa1193940:intron 25.0%
! AATCCCAACAAATACAATAA+AGG + chr8_1:40840019-40840038 Msa1193940:intron 25.0%
! CATCCTTTATTGTATTTGTT+GGG - chr8_1:40840025-40840044 None:intergenic 25.0%
! ACATCCTTTATTGTATTTGT+TGG - chr8_1:40840026-40840045 None:intergenic 25.0%
! AATCGTTACAAATTCAAACA+CGG - chr8_1:40840129-40840148 None:intergenic 25.0%
! TATTTGACATATATACTTGG+TGG + chr8_1:40840521-40840540 Msa1193940:intron 25.0%
! GTATACGTCTAAATTACATT+TGG + chr8_1:40840737-40840756 Msa1193940:CDS 25.0%
!! TTTTTCCTTCTACTAGATTT+AGG + chr8_1:40840806-40840825 Msa1193940:CDS 25.0%
! ACCATAAAGTGTTTGATATG+CGG - chr8_1:40835477-40835496 None:intergenic 30.0%
! CGATCAAATTTTCAACTCAA+AGG - chr8_1:40836209-40836228 None:intergenic 30.0%
CAAGTGTTTAGGAGTAATTT+CGG - chr8_1:40836356-40836375 None:intergenic 30.0%
! ATAGTTAGGACGAATTGTTT+TGG - chr8_1:40836428-40836447 None:intergenic 30.0%
AGTTACCTAAACGAATAGTT+AGG - chr8_1:40836442-40836461 None:intergenic 30.0%
CAAATTTGCACATGTTAGAA+AGG + chr8_1:40836504-40836523 Msa1193940:intron 30.0%
! AACGCATATATTTTGTACAC+AGG + chr8_1:40836656-40836675 Msa1193940:intron 30.0%
!! TATTTGAAACGAAGTGTTGT+TGG - chr8_1:40836748-40836767 None:intergenic 30.0%
CAAATATGTAGAGTACACAT+AGG + chr8_1:40836762-40836781 Msa1193940:CDS 30.0%
TGAGTGTAGGTTATAATCTT+TGG - chr8_1:40836903-40836922 None:intergenic 30.0%
TATAACCTACACTCAACTAA+TGG + chr8_1:40836908-40836927 Msa1193940:CDS 30.0%
ATGGAAACTATATCAAACAC+AGG + chr8_1:40836927-40836946 Msa1193940:CDS 30.0%
TCCCATATTAATAAGCAAAG+GGG + chr8_1:40836956-40836975 Msa1193940:CDS 30.0%
TCCCCTTTGCTTATTAATAT+GGG - chr8_1:40836960-40836979 None:intergenic 30.0%
TTCCCCTTTGCTTATTAATA+TGG - chr8_1:40836961-40836980 None:intergenic 30.0%
AGATTCAATGAGTTCAATGA+AGG - chr8_1:40837150-40837169 None:intergenic 30.0%
ATTGAACTCATTGAATCTTC+AGG + chr8_1:40837152-40837171 Msa1193940:CDS 30.0%
ACCATCATTTGGAAATATTG+TGG - chr8_1:40837195-40837214 None:intergenic 30.0%
ACAATATTTCCAAATGATGG+TGG + chr8_1:40837194-40837213 Msa1193940:CDS 30.0%
! AAGAAAAGCACATAAACAAG+AGG + chr8_1:40837217-40837236 Msa1193940:CDS 30.0%
ATGGTTCTTATGTATATACC+TGG + chr8_1:40837308-40837327 Msa1193940:CDS 30.0%
TGGTTCTTATGTATATACCT+GGG + chr8_1:40837309-40837328 Msa1193940:CDS 30.0%
TGAATATTGGATTGCTCATA+AGG + chr8_1:40837369-40837388 Msa1193940:CDS 30.0%
!! ATGGATTTGTTGATAGCATT+GGG + chr8_1:40837479-40837498 Msa1193940:CDS 30.0%
! ACATTTTCTTCCCATTTTGA+AGG + chr8_1:40837548-40837567 Msa1193940:CDS 30.0%
TATTCTACTTGGCAAGTATT+TGG + chr8_1:40837610-40837629 Msa1193940:CDS 30.0%
ATCATCATCAAGAGTTAGTA+AGG - chr8_1:40837705-40837724 None:intergenic 30.0%
!! ACTAACTCTTGATGATGATA+AGG + chr8_1:40837706-40837725 Msa1193940:CDS 30.0%
!! CTAACTCTTGATGATGATAA+GGG + chr8_1:40837707-40837726 Msa1193940:CDS 30.0%
GATGATAAGGGAAATGTTAT+AGG + chr8_1:40837719-40837738 Msa1193940:CDS 30.0%
!!! ATCAGATGGTTTTGTTGTTT+GGG + chr8_1:40837814-40837833 Msa1193940:CDS 30.0%
! GTAAATGAGAGTATGATAAC+TGG + chr8_1:40837848-40837867 Msa1193940:CDS 30.0%
! GAACAAAGTATTTGGAAATC+TGG - chr8_1:40838051-40838070 None:intergenic 30.0%
ACATGTACACAGTGTATATT+TGG - chr8_1:40838254-40838273 None:intergenic 30.0%
ATATACACTGTGTACATGTT+TGG + chr8_1:40838255-40838274 Msa1193940:intron 30.0%
TTGTGTTATCTCTTTCAACA+TGG + chr8_1:40838482-40838501 Msa1193940:CDS 30.0%
! AAGATGGTATCCATGATTTT+GGG - chr8_1:40838543-40838562 None:intergenic 30.0%
TGAGTTTCCTAATGTTGAAA+TGG - chr8_1:40838786-40838805 None:intergenic 30.0%
!! CTTGTTACTTACAATTTTGC+AGG + chr8_1:40838806-40838825 Msa1193940:intron 30.0%
TCTCTGCTATTAAGATGTTA+TGG + chr8_1:40839061-40839080 Msa1193940:intron 30.0%
!! GTAAATAGTCATTTTAGTCC+TGG + chr8_1:40839184-40839203 Msa1193940:intron 30.0%
!!! ATTTTTGGCATGATCAACAA+TGG - chr8_1:40839384-40839403 None:intergenic 30.0%
AAAGAATTTGTGTCTATTGC+AGG + chr8_1:40839446-40839465 Msa1193940:CDS 30.0%
CAAAACAAGGAAATAATGGT+TGG + chr8_1:40839491-40839510 Msa1193940:CDS 30.0%
!! AACAGGAATTTTGGTATCAT+TGG + chr8_1:40839598-40839617 Msa1193940:CDS 30.0%
!! GAATTTTGGTATCATTGGAT+GGG + chr8_1:40839603-40839622 Msa1193940:CDS 30.0%
!! AATTTTGGTATCATTGGATG+GGG + chr8_1:40839604-40839623 Msa1193940:CDS 30.0%
! GAAATAACTTCTTTTGCATC+CGG - chr8_1:40839668-40839687 None:intergenic 30.0%
GACTAAAGCTACTAAAGTAA+AGG + chr8_1:40839805-40839824 Msa1193940:CDS 30.0%
AAGCAATAATTTGGGAATTG+GGG - chr8_1:40839858-40839877 None:intergenic 30.0%
GAAGCAATAATTTGGGAATT+GGG - chr8_1:40839859-40839878 None:intergenic 30.0%
TGAAGCAATAATTTGGGAAT+TGG - chr8_1:40839860-40839879 None:intergenic 30.0%
AAGGAGTGAAGCAATAATTT+GGG - chr8_1:40839866-40839885 None:intergenic 30.0%
AAAGGAGTGAAGCAATAATT+TGG - chr8_1:40839867-40839886 None:intergenic 30.0%
AATTATTGCTTCACTCCTTT+AGG + chr8_1:40839867-40839886 Msa1193940:intron 30.0%
ATTATTGCTTCACTCCTTTA+GGG + chr8_1:40839868-40839887 Msa1193940:intron 30.0%
TCAATGCAGTTATAGTGTAT+TGG + chr8_1:40839963-40839982 Msa1193940:intron 30.0%
! CAATTTTTCGTCAGACTTTA+TGG + chr8_1:40840262-40840281 Msa1193940:intron 30.0%
!!! TGTTAACACTCCGTTTTTTT+AGG - chr8_1:40840297-40840316 None:intergenic 30.0%
! CTTGCAATTATTGTGTGTTT+TGG - chr8_1:40840348-40840367 None:intergenic 30.0%
TCTTATGAAGAGTAACTTAG+AGG + chr8_1:40840672-40840691 Msa1193940:CDS 30.0%
CTAAATTACATTTGGGCTTT+AGG + chr8_1:40840745-40840764 Msa1193940:CDS 30.0%
CTGAATAACTTGGAGATTAA+TGG + chr8_1:40840925-40840944 Msa1193940:CDS 30.0%
CTCTCAATTGTTGCAGTATT+TGG + chr8_1:40835438-40835457 Msa1193940:CDS 35.0%
AAAGCAGAGATAAGTACAAG+AGG + chr8_1:40835983-40836002 Msa1193940:intron 35.0%
TTATCATGGGAATGGTTCAT+GGG - chr8_1:40836149-40836168 None:intergenic 35.0%
AAAGGATCTCAAAGTTGAAG+AGG - chr8_1:40836191-40836210 None:intergenic 35.0%
GACGTTGTGGCTTATTTAAA+AGG - chr8_1:40836239-40836258 None:intergenic 35.0%
! GAAAAAGGCAATGCTTTAAG+AGG - chr8_1:40836283-40836302 None:intergenic 35.0%
TCAGACTTCTTCAAGTGTTT+AGG - chr8_1:40836367-40836386 None:intergenic 35.0%
TTCTCACAAAAAATCGAACC+TGG + chr8_1:40836397-40836416 Msa1193940:intron 35.0%
!!! CGAATTGTTTTGGATAATCC+AGG - chr8_1:40836418-40836437 None:intergenic 35.0%
TTCGTCCTAACTATTCGTTT+AGG + chr8_1:40836434-40836453 Msa1193940:intron 35.0%
ACTATCATCTTCCATGGATT+TGG - chr8_1:40836724-40836743 None:intergenic 35.0%
ATATGTAGAGTACACATAGG+TGG + chr8_1:40836765-40836784 Msa1193940:CDS 35.0%
AGTTTCCATTAGTTGAGTGT+AGG - chr8_1:40836916-40836935 None:intergenic 35.0%
TTTCTATGGTTTCAACACCT+TGG - chr8_1:40837067-40837086 None:intergenic 35.0%
ATGAGTTCAATGAAGGTTCT+TGG - chr8_1:40837143-40837162 None:intergenic 35.0%
TCATTGAATCTTCAGGATCA+GGG + chr8_1:40837159-40837178 Msa1193940:CDS 35.0%
GCCACAATATTTCCAAATGA+TGG + chr8_1:40837191-40837210 Msa1193940:CDS 35.0%
GGTTCTTATGTATATACCTG+GGG + chr8_1:40837310-40837329 Msa1193940:CDS 35.0%
! TCTAAAACATCTTTAACCCC+AGG - chr8_1:40837329-40837348 None:intergenic 35.0%
!! TGGGGTTAAAGATGTTTTAG+AGG + chr8_1:40837328-40837347 Msa1193940:CDS 35.0%
ATATTGGATTGCTCATAAGG+TGG + chr8_1:40837372-40837391 Msa1193940:CDS 35.0%
TATTGGATTGCTCATAAGGT+GGG + chr8_1:40837373-40837392 Msa1193940:CDS 35.0%
! ACCTTTGCTCAAAGCTTTAT+AGG - chr8_1:40837450-40837469 None:intergenic 35.0%
!! CATGGATTTGTTGATAGCAT+TGG + chr8_1:40837478-40837497 Msa1193940:CDS 35.0%
!! TATTTGGAAGTGTTGGCTAA+AGG + chr8_1:40837626-40837645 Msa1193940:CDS 35.0%
!! ATTTGGAAGTGTTGGCTAAA+GGG + chr8_1:40837627-40837646 Msa1193940:CDS 35.0%
! GTGAAAGAGAAATTGATAGC+AGG + chr8_1:40837741-40837760 Msa1193940:CDS 35.0%
!!! CATCAGATGGTTTTGTTGTT+TGG + chr8_1:40837813-40837832 Msa1193940:CDS 35.0%
!!! TCAGATGGTTTTGTTGTTTG+GGG + chr8_1:40837815-40837834 Msa1193940:CDS 35.0%
! GAATGGTGTTTTGCATGTTA+AGG + chr8_1:40837931-40837950 Msa1193940:CDS 35.0%
! TTTTGCATGTTAAGGTGACA+AGG + chr8_1:40837939-40837958 Msa1193940:CDS 35.0%
TTTGCATGTTAAGGTGACAA+GGG + chr8_1:40837940-40837959 Msa1193940:CDS 35.0%
AAATCTGGTCAGCATATTTC+TGG - chr8_1:40838036-40838055 None:intergenic 35.0%
AATATTGTCTCCTTCGAAAG+AGG + chr8_1:40838226-40838245 Msa1193940:intron 35.0%
! ATATTTGGTTCCTCTTTCGA+AGG - chr8_1:40838239-40838258 None:intergenic 35.0%
! ACATGTTTGGACTCATTTTG+AGG + chr8_1:40838268-40838287 Msa1193940:intron 35.0%
ATAGAGCTTCAATGAAATCC+CGG + chr8_1:40838338-40838357 Msa1193940:intron 35.0%
CTCTTTCAACATGGATATCA+TGG + chr8_1:40838491-40838510 Msa1193940:CDS 35.0%
TGCATTCATACCCAAAATCA+TGG + chr8_1:40838530-40838549 Msa1193940:CDS 35.0%
! GAAGATGGTATCCATGATTT+TGG - chr8_1:40838544-40838563 None:intergenic 35.0%
! TCAGTTTGGAATTTCAGTCA+TGG + chr8_1:40838588-40838607 Msa1193940:CDS 35.0%
! CAACTTGCCATTTCAACATT+AGG + chr8_1:40838776-40838795 Msa1193940:intron 35.0%
TGCATTGTGTTTGATAAGAC+AGG + chr8_1:40838834-40838853 Msa1193940:CDS 35.0%
!! AGTTTTGTAGTTACAACCAC+TGG - chr8_1:40838879-40838898 None:intergenic 35.0%
! TCAACAATGGACTTTGCTAT+TGG - chr8_1:40839371-40839390 None:intergenic 35.0%
! GACACAAATTCTTTTGCTTC+TGG - chr8_1:40839440-40839459 None:intergenic 35.0%
!! GGAATTTTGGTATCATTGGA+TGG + chr8_1:40839602-40839621 Msa1193940:CDS 35.0%
! ATAAAGAGCATAATGGTGAC+AGG + chr8_1:40839707-40839726 Msa1193940:CDS 35.0%
TAATGGTGACAGGTGATAAT+TGG + chr8_1:40839717-40839736 Msa1193940:CDS 35.0%
AATGGTGACAGGTGATAATT+GGG + chr8_1:40839718-40839737 Msa1193940:CDS 35.0%
AATTCTATTGCTAGACAAGC+TGG + chr8_1:40839749-40839768 Msa1193940:CDS 35.0%
!! ACTTTAGTAGCTTTAGTCTC+AGG - chr8_1:40839803-40839822 None:intergenic 35.0%
!! AGTCTTTAACGTCGACTTAT+TGG + chr8_1:40840050-40840069 Msa1193940:intron 35.0%
AATCCGAGTTTGATTCTTGA+TGG + chr8_1:40840236-40840255 Msa1193940:intron 35.0%
TTGCCATCAAGAATCAAACT+CGG - chr8_1:40840242-40840261 None:intergenic 35.0%
!!! ACTCCGTTTTTTTAGGAGAA+GGG - chr8_1:40840290-40840309 None:intergenic 35.0%
! AGTTTTCTTTGCAAGGTCAA+TGG - chr8_1:40840710-40840729 None:intergenic 35.0%
! GTGAGAAAGTTTTCTTTGCA+AGG - chr8_1:40840717-40840736 None:intergenic 35.0%
GGTAACCTAAATCTAGTAGA+AGG - chr8_1:40840814-40840833 None:intergenic 35.0%
AATCTCCAAGTTATTCAGCT+TGG - chr8_1:40840923-40840942 None:intergenic 35.0%
!! TTCTGATTCGGCTAAGCTTA+TGG + chr8_1:40835396-40835415 Msa1193940:CDS 40.0%
! TAAAGTGTTTGATATGCGGC+TGG - chr8_1:40835473-40835492 None:intergenic 40.0%
GCCGCATATCAAACACTTTA+TGG + chr8_1:40835473-40835492 Msa1193940:intron 40.0%
GTTATCATGGGAATGGTTCA+TGG - chr8_1:40836150-40836169 None:intergenic 40.0%
TCTACATCCTTGGTGGAAAA+AGG - chr8_1:40836298-40836317 None:intergenic 40.0%
! TTTTTCCACCAAGGATGTAG+AGG + chr8_1:40836297-40836316 Msa1193940:intron 40.0%
GTGTTTAGGAGTAATTTCGG+TGG - chr8_1:40836353-40836372 None:intergenic 40.0%
TGAACGCTAGTGCCTATAAT+TGG + chr8_1:40836574-40836593 Msa1193940:intron 40.0%
TGCGTTGTTATGGTATGCAA+TGG - chr8_1:40836642-40836661 None:intergenic 40.0%
CTCAAATCCAGCATCTTCAA+TGG - chr8_1:40836700-40836719 None:intergenic 40.0%
CATTGAAGATGCTGGATTTG+AGG + chr8_1:40836698-40836717 Msa1193940:CDS 40.0%
GTTGGAACTATCATCTTCCA+TGG - chr8_1:40836730-40836749 None:intergenic 40.0%
TTGAAGAGCTGATTGCACAT+TGG - chr8_1:40836814-40836833 None:intergenic 40.0%
TTCTGCTTCTTCAGTTGCTA+AGG - chr8_1:40836868-40836887 None:intergenic 40.0%
GTTCTTGGACCAGTCATATA+AGG - chr8_1:40837128-40837147 None:intergenic 40.0%
CTCATTGAATCTTCAGGATC+AGG + chr8_1:40837158-40837177 Msa1193940:CDS 40.0%
! GCTTTTCTTCCACCATCATT+TGG - chr8_1:40837206-40837225 None:intergenic 40.0%
CTTCCTATGACAAACTGTAC+CGG - chr8_1:40837410-40837429 None:intergenic 40.0%
!! GCCTATAAAGCTTTGAGCAA+AGG + chr8_1:40837446-40837465 Msa1193940:CDS 40.0%
GAGCAAAGGTTATGCAAACA+TGG + chr8_1:40837460-40837479 Msa1193940:CDS 40.0%
! TGGCAAGTATTTGGAAGTGT+TGG + chr8_1:40837619-40837638 Msa1193940:CDS 40.0%
GTTAGTAAGGTTGCTGTATC+AGG - chr8_1:40837692-40837711 None:intergenic 40.0%
TGATGTGATCAAAGTTGTGC+CGG + chr8_1:40837778-40837797 Msa1193940:CDS 40.0%
AAAGCCTGTTGCTAAGATGA+AGG + chr8_1:40837877-40837896 Msa1193940:CDS 40.0%
AAGCCTGTTGCTAAGATGAA+GGG + chr8_1:40837878-40837897 Msa1193940:CDS 40.0%
TGCTAAGATGAAGGGTGATA+TGG + chr8_1:40837886-40837905 Msa1193940:CDS 40.0%
ATGAAGGGTGATATGGTGAT+TGG + chr8_1:40837893-40837912 Msa1193940:CDS 40.0%
TGACAAAATCATGTTGACGC+CGG - chr8_1:40838360-40838379 None:intergenic 40.0%
!!! TTACTAGTGCCTGTTTTTGC+AGG + chr8_1:40838456-40838475 Msa1193940:intron 40.0%
ACACAATCACCTGCAAAAAC+AGG - chr8_1:40838468-40838487 None:intergenic 40.0%
! TGGATATCATGGTTTGTAGC+TGG + chr8_1:40838502-40838521 Msa1193940:CDS 40.0%
TTTGAGCTTGCACTTCAGTT+TGG + chr8_1:40838574-40838593 Msa1193940:CDS 40.0%
! ACTCAAGGTGTGTTGATCAA+AGG + chr8_1:40838682-40838701 Msa1193940:CDS 40.0%
TGTGTGCACTTTCTAATGCT+TGG - chr8_1:40838711-40838730 None:intergenic 40.0%
! AGCATTAGAAAGTGCACACA+AGG + chr8_1:40838711-40838730 Msa1193940:CDS 40.0%
ACAAGGTGAGTGAGTAACAT+TGG + chr8_1:40838728-40838747 Msa1193940:intron 40.0%
! ATGGCAAGTTGAGAGAACAA+TGG - chr8_1:40838767-40838786 None:intergenic 40.0%
AAGACAGGAACTCTGACTAT+TGG + chr8_1:40838849-40838868 Msa1193940:CDS 40.0%
AGACAGGAACTCTGACTATT+GGG + chr8_1:40838850-40838869 Msa1193940:CDS 40.0%
! GTGTCTCTCGTTAGTCTATT+TGG + chr8_1:40839263-40839282 Msa1193940:intron 40.0%
TTTGTGTCTATTGCAGGACA+TGG + chr8_1:40839452-40839471 Msa1193940:CDS 40.0%
GAAGGCAGTTGTTCAAAACA+AGG + chr8_1:40839478-40839497 Msa1193940:CDS 40.0%
ACTAGCAGAAGCTGAAAACA+TGG + chr8_1:40839571-40839590 Msa1193940:CDS 40.0%
! CATGGCTCAAACAGGAATTT+TGG + chr8_1:40839589-40839608 Msa1193940:CDS 40.0%
TCATTGGATGGGGAAATTGT+TGG + chr8_1:40839614-40839633 Msa1193940:CDS 40.0%
! TGGGGAAATTGTTGGAGTTT+TGG + chr8_1:40839622-40839641 Msa1193940:CDS 40.0%
TGTGTCTGATCCATTGAAAC+CGG + chr8_1:40839646-40839665 Msa1193940:CDS 40.0%
! TCTTTTGCATCCGGTTTCAA+TGG - chr8_1:40839659-40839678 None:intergenic 40.0%
ATGGTGACAGGTGATAATTG+GGG + chr8_1:40839719-40839738 Msa1193940:CDS 40.0%
! AGCTGGTATTGAAACTGTCA+TGG + chr8_1:40839766-40839785 Msa1193940:CDS 40.0%
TATTGAAACTGTCATGGCTG+AGG + chr8_1:40839772-40839791 Msa1193940:CDS 40.0%
! ACCACGTGACGTGATTTTAT+TGG + chr8_1:40840073-40840092 Msa1193940:intron 40.0%
! CCACGTGACGTGATTTTATT+GGG + chr8_1:40840074-40840093 Msa1193940:intron 40.0%
ACCAAGTGATTGAACTCAAG+TGG + chr8_1:40840178-40840197 Msa1193940:intron 40.0%
ACCACTTGAGTTCAATCACT+TGG - chr8_1:40840182-40840201 None:intergenic 40.0%
TTAATGAACTCCCCCTAAGA+CGG + chr8_1:40840201-40840220 Msa1193940:intron 40.0%
GTCCCCTTCTCCTAAAAAAA+CGG + chr8_1:40840284-40840303 Msa1193940:intron 40.0%
!!! CTCCGTTTTTTTAGGAGAAG+GGG - chr8_1:40840289-40840308 None:intergenic 40.0%
!!! CACTCCGTTTTTTTAGGAGA+AGG - chr8_1:40840291-40840310 None:intergenic 40.0%
! TATACTTGGTGGCAGAATTC+TGG + chr8_1:40840532-40840551 Msa1193940:intron 40.0%
CAGAATTCTGGATACACTGT+AGG + chr8_1:40840544-40840563 Msa1193940:intron 40.0%
TTCTGGATACACTGTAGGAA+TGG + chr8_1:40840549-40840568 Msa1193940:CDS 40.0%
! AAAAGTATGCCAGCAGCAAT+AGG - chr8_1:40840790-40840809 None:intergenic 40.0%
ACCAACCAAGCTGAATAACT+TGG + chr8_1:40840915-40840934 Msa1193940:CDS 40.0%
TCCAAGTTATTCAGCTTGGT+TGG - chr8_1:40840919-40840938 None:intergenic 40.0%
TCTCAAAGTTGAAGAGGTGG+TGG - chr8_1:40836185-40836204 None:intergenic 45.0%
GGATCTCAAAGTTGAAGAGG+TGG - chr8_1:40836188-40836207 None:intergenic 45.0%
! TGATTTGGCATACGACGTTG+TGG - chr8_1:40836252-40836271 None:intergenic 45.0%
! AGCATTGCCTTTTTCCACCA+AGG + chr8_1:40836288-40836307 Msa1193940:intron 45.0%
AGGAGTAATTTCGGTGGTGT+CGG - chr8_1:40836347-40836366 None:intergenic 45.0%
! TGGATTTGAGGCCAAATCCA+TGG + chr8_1:40836710-40836729 Msa1193940:CDS 45.0%
AAGAGCTGATTGCACATTGG+AGG - chr8_1:40836811-40836830 None:intergenic 45.0%
CAATCTCTTAGGACACTCCA+AGG + chr8_1:40837047-40837066 Msa1193940:CDS 45.0%
! AAGGTGGGAATTTTCGACAC+CGG + chr8_1:40837388-40837407 Msa1193940:CDS 45.0%
ACACCGGTACAGTTTGTCAT+AGG + chr8_1:40837404-40837423 Msa1193940:CDS 45.0%
GATGTGATCAAAGTTGTGCC+GGG + chr8_1:40837779-40837798 Msa1193940:CDS 45.0%
TCACCCTTCATCTTAGCAAC+AGG - chr8_1:40837884-40837903 None:intergenic 45.0%
AAGGGTGATATGGTGATTGG+TGG + chr8_1:40837896-40837915 Msa1193940:CDS 45.0%
GGTGGTACTGTGAATGAGAA+TGG + chr8_1:40837914-40837933 Msa1193940:CDS 45.0%
CATGTTAAGGTGACAAGGGT+TGG + chr8_1:40837944-40837963 Msa1193940:CDS 45.0%
! ACTTGTTGAGTCTGCTCAGA+TGG + chr8_1:40837997-40838016 Msa1193940:CDS 45.0%
!! TGGTCAGCATATTTCTGGAC+AGG - chr8_1:40838031-40838050 None:intergenic 45.0%
GACAAAATCATGTTGACGCC+GGG - chr8_1:40838359-40838378 None:intergenic 45.0%
! ATAGCTTGTCCTTGTGCTCT+AGG + chr8_1:40838613-40838632 Msa1193940:CDS 45.0%
! CAAGGTGTGTTGATCAAAGG+TGG + chr8_1:40838685-40838704 Msa1193940:CDS 45.0%
TATTGCAGGACATGGAGTGA+AGG + chr8_1:40839460-40839479 Msa1193940:CDS 45.0%
GCTGAAAACATGGCTCAAAC+AGG + chr8_1:40839581-40839600 Msa1193940:CDS 45.0%
!! TCCTTTAGGGTTTGCTCTCA+TGG + chr8_1:40839881-40839900 Msa1193940:intron 45.0%
ACCATGAGAGCAAACCCTAA+AGG - chr8_1:40839885-40839904 None:intergenic 45.0%
CCCAATAAAATCACGTCACG+TGG - chr8_1:40840077-40840096 None:intergenic 45.0%
TTCTGTACGATCCGTCTTAG+GGG - chr8_1:40840215-40840234 None:intergenic 45.0%
CTTCTGTACGATCCGTCTTA+GGG - chr8_1:40840216-40840235 None:intergenic 45.0%
TCTTCTGTACGATCCGTCTT+AGG - chr8_1:40840217-40840236 None:intergenic 45.0%
GGATACACTGTAGGAATGGT+AGG + chr8_1:40840553-40840572 Msa1193940:CDS 45.0%
ACTGTAGGAATGGTAGGAGA+TGG + chr8_1:40840559-40840578 Msa1193940:CDS 45.0%
AGTAGCAGCTGATGTTGGAA+TGG + chr8_1:40840603-40840622 Msa1193940:CDS 45.0%
GCTGATGTTGGAATGGCAAT+TGG + chr8_1:40840610-40840629 Msa1193940:CDS 45.0%
TATGCCAGCAGCAATAGGAA+TGG - chr8_1:40840785-40840804 None:intergenic 45.0%
! CTAGATTTAGGTTACCCCCT+TGG + chr8_1:40840818-40840837 Msa1193940:CDS 45.0%
!!! ATTAATATAGTTTTTTTTTA+AGG - chr8_1:40835724-40835743 None:intergenic 5.0%
!!! TTTTGAAATTTTAATTTATT+CGG - chr8_1:40839236-40839255 None:intergenic 5.0%
! AGTAATTTCGGTGGTGTCGG+GGG - chr8_1:40836344-40836363 None:intergenic 50.0%
! GAGTAATTTCGGTGGTGTCG+GGG - chr8_1:40836345-40836364 None:intergenic 50.0%
GGAGTAATTTCGGTGGTGTC+GGG - chr8_1:40836346-40836365 None:intergenic 50.0%
! ACAGGAAGAGAGCATACGTG+AGG + chr8_1:40836674-40836693 Msa1193940:intron 50.0%
TCAGCTCTTCAATCCCTTCG+TGG + chr8_1:40836822-40836841 Msa1193940:CDS 50.0%
CAGCTCTTCAATCCCTTCGT+GGG + chr8_1:40836823-40836842 Msa1193940:CDS 50.0%
AGCTCTTCAATCCCTTCGTG+GGG + chr8_1:40836824-40836843 Msa1193940:CDS 50.0%
! TGCTATTTGCACCCCACGAA+GGG - chr8_1:40836838-40836857 None:intergenic 50.0%
TGGGGTGCAAATAGCACAAG+TGG + chr8_1:40836842-40836861 Msa1193940:CDS 50.0%
GGCTAAAGGGAAAACATCGC+AGG + chr8_1:40837640-40837659 Msa1193940:CDS 50.0%
GCAGGCTATTGCGAAACTCA+TGG + chr8_1:40837658-40837677 Msa1193940:CDS 50.0%
! ACCTTGAGTTGCACCAACTC+CGG - chr8_1:40838671-40838690 None:intergenic 50.0%
TCTGACTATTGGGAAGCCAG+TGG + chr8_1:40838860-40838879 Msa1193940:CDS 50.0%
!! TGAACTTGTTGCTGCAGCAG+AGG + chr8_1:40838929-40838948 Msa1193940:CDS 50.0%
GTCCTGGAGTGTGACATGTT+TGG + chr8_1:40839200-40839219 Msa1193940:intron 50.0%
GACCAAACATGTCACACTCC+AGG - chr8_1:40839205-40839224 None:intergenic 50.0%
TCTGTACGATCCGTCTTAGG+GGG - chr8_1:40840214-40840233 None:intergenic 50.0%
ACATCAGCTGCTACTAGTGC+TGG - chr8_1:40840598-40840617 None:intergenic 50.0%
GCACTAGTAGCAGCTGATGT+TGG + chr8_1:40840598-40840617 Msa1193940:CDS 50.0%
GTTGGAATGGCAATTGGTGC+TGG + chr8_1:40840616-40840635 Msa1193940:CDS 50.0%
CTAGCCATTCCTATTGCTGC+TGG + chr8_1:40840778-40840797 Msa1193940:CDS 50.0%
TTGCAGCTCCAGCAATCCAA+GGG - chr8_1:40840837-40840856 None:intergenic 50.0%
ATTGCAGCTCCAGCAATCCA+AGG - chr8_1:40840838-40840857 None:intergenic 50.0%
TTGGATTGCTGGAGCTGCAA+TGG + chr8_1:40840837-40840856 Msa1193940:CDS 50.0%
CCTCACCTCTACATCCTTGG+TGG - chr8_1:40836305-40836324 None:intergenic 55.0%
CCACCAAGGATGTAGAGGTG+AGG + chr8_1:40836302-40836321 Msa1193940:intron 55.0%
GCTCCTCACCTCTACATCCT+TGG - chr8_1:40836308-40836327 None:intergenic 55.0%
GGATGTAGAGGTGAGGAGCA+AGG + chr8_1:40836309-40836328 Msa1193940:intron 55.0%
CGTGAGGCCATTGAAGATGC+TGG + chr8_1:40836690-40836709 Msa1193940:CDS 55.0%
!! GTGCTATTTGCACCCCACGA+AGG - chr8_1:40836839-40836858 None:intergenic 55.0%
!! TCTGATGCTACTTTCGCGCC+CGG - chr8_1:40837800-40837819 None:intergenic 55.0%
GGCGCGAAAGTAGCATCAGA+TGG + chr8_1:40837800-40837819 Msa1193940:CDS 55.0%
AACCATGACCGCTGTAGGAG+TGG - chr8_1:40838644-40838663 None:intergenic 55.0%
ACTCCTACAGCGGTCATGGT+TGG + chr8_1:40838643-40838662 Msa1193940:CDS 55.0%
GTACCAACCATGACCGCTGT+AGG - chr8_1:40838649-40838668 None:intergenic 55.0%
! ACAGCGGTCATGGTTGGTAC+CGG + chr8_1:40838649-40838668 Msa1193940:CDS 55.0%
! GTCATGGTTGGTACCGGAGT+TGG + chr8_1:40838655-40838674 Msa1193940:CDS 55.0%
!! ACCGGAGTTGGTGCAACTCA+AGG + chr8_1:40838667-40838686 Msa1193940:CDS 55.0%
TTGTTGCTGCAGCAGAGGCA+AGG + chr8_1:40838934-40838953 Msa1193940:CDS 55.0%
AGGTTACCCCCTTGGATTGC+TGG + chr8_1:40840826-40840845 Msa1193940:CDS 55.0%
TGCAGCTCCAGCAATCCAAG+GGG - chr8_1:40840836-40840855 None:intergenic 55.0%
GTGGCTAGGCCTAGAGCACA+AGG - chr8_1:40838625-40838644 None:intergenic 60.0%
AGGCCTAGCCACTCCTACAG+CGG + chr8_1:40838633-40838652 Msa1193940:CDS 60.0%
TGACCGCTGTAGGAGTGGCT+AGG - chr8_1:40838639-40838658 None:intergenic 60.0%
AGCCACTCCTACAGCGGTCA+TGG + chr8_1:40838639-40838658 Msa1193940:CDS 60.0%
GCAGCTCCAGCAATCCAAGG+GGG - chr8_1:40840835-40840854 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 40835388 40841010 40835388 ID=Msa1193940;Name=Msa1193940
chr8_1 mRNA 40835388 40841010 40835388 ID=Msa1193940-mRNA-1;Parent=Msa1193940;Name=Msa1193940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.4|0.16|0.83|1|1|6|47|919
chr8_1 exon 40835388 40835459 40835388 ID=Msa1193940-mRNA-1:exon:13178;Parent=Msa1193940-mRNA-1
chr8_1 exon 40836678 40838075 40836678 ID=Msa1193940-mRNA-1:exon:13179;Parent=Msa1193940-mRNA-1
chr8_1 exon 40838478 40838732 40838478 ID=Msa1193940-mRNA-1:exon:13180;Parent=Msa1193940-mRNA-1
chr8_1 exon 40838828 40838962 40838828 ID=Msa1193940-mRNA-1:exon:13181;Parent=Msa1193940-mRNA-1
chr8_1 exon 40839353 40839835 40839353 ID=Msa1193940-mRNA-1:exon:13182;Parent=Msa1193940-mRNA-1
chr8_1 exon 40840547 40841010 40840547 ID=Msa1193940-mRNA-1:exon:13183;Parent=Msa1193940-mRNA-1
chr8_1 CDS 40835388 40835459 40835388 ID=Msa1193940-mRNA-1:cds;Parent=Msa1193940-mRNA-1
chr8_1 CDS 40836678 40838075 40836678 ID=Msa1193940-mRNA-1:cds;Parent=Msa1193940-mRNA-1
chr8_1 CDS 40838478 40838732 40838478 ID=Msa1193940-mRNA-1:cds;Parent=Msa1193940-mRNA-1
chr8_1 CDS 40838828 40838962 40838828 ID=Msa1193940-mRNA-1:cds;Parent=Msa1193940-mRNA-1
chr8_1 CDS 40839353 40839835 40839353 ID=Msa1193940-mRNA-1:cds;Parent=Msa1193940-mRNA-1
chr8_1 CDS 40840547 40840963 40840547 ID=Msa1193940-mRNA-1:cds;Parent=Msa1193940-mRNA-1
chr8_1 three_prime_UTR 40840964 40841010 40840964 ID=Msa1193940-mRNA-1:three_prime_utr;Parent=Msa1193940-mRNA-1
Gene Sequence

>Msa1193940

ATGCGTTTTTCTGATTCGGCTAAGCTTATGGAATCTGCAATTTTTATTTTCTCTCAATTGTTGCAGTATTTGGAAGAGAGCATACGTGAGGCCATTGAAGATGCTGGATTTGAGGCCAAATCCATGGAAGATGATAGTTCCAACAACACTTCGTTTCAAATATGTAGAGTACACATAGGTGGCATGACTTGTACTTCTTGCTCCTCCAATGTGCAATCAGCTCTTCAATCCCTTCGTGGGGTGCAAATAGCACAAGTGGCCTTAGCAACTGAAGAAGCAGAAATTCGTTACGATCCAAAGATTATAACCTACACTCAACTAATGGAAACTATATCAAACACAGGTTTTAATCCCATATTAATAAGCAAAGGGGAACACATAAGCAAAATTGAACTTAAAATTGATGGCATAAAAAATGAACAATCAATGTATATCATTGAACAATCTCTTAGGACACTCCAAGGTGTTGAAACCATAGAAACATATTTAGACATTAATAAAATTGTCTTAACTTATAAACCTTATATGACTGGTCCAAGAACCTTCATTGAACTCATTGAATCTTCAGGATCAGGGTGTTTTAGAGCCACAATATTTCCAAATGATGGTGGAAGAAAAGCACATAAACAAGAGGAAATTAATAGATACTTTAAATTATTAATTTGGAGTTTGGTTTTTACTGTTCCTGTTTTTTTAACATCTATGGTTCTTATGTATATACCTGGGGTTAAAGATGTTTTAGAGGTTAAAATTGTCAATATGTTGAATATTGGATTGCTCATAAGGTGGGAATTTTCGACACCGGTACAGTTTGTCATAGGAAGAAGATTTTATGTTGGAGCCTATAAAGCTTTGAGCAAAGGTTATGCAAACATGGATTTGTTGATAGCATTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATGTTGTTGGAAGAGCTACATTTTCTTCCCATTTTGAAGGAAGTGATTTTTTCGAAACAAGTTCTATGCTTATTTCTTTTATTCTACTTGGCAAGTATTTGGAAGTGTTGGCTAAAGGGAAAACATCGCAGGCTATTGCGAAACTCATGGATTTAACACCTGATACAGCAACCTTACTAACTCTTGATGATGATAAGGGAAATGTTATAGGTGAAAGAGAAATTGATAGCAGGTTGATACAGAAGAATGATGTGATCAAAGTTGTGCCGGGCGCGAAAGTAGCATCAGATGGTTTTGTTGTTTGGGGACAAAGTCATGTAAATGAGAGTATGATAACTGGTGAAGCAAAGCCTGTTGCTAAGATGAAGGGTGATATGGTGATTGGTGGTACTGTGAATGAGAATGGTGTTTTGCATGTTAAGGTGACAAGGGTTGGATCAGAAACTGCACTTTCACAGATTGTTAGACTTGTTGAGTCTGCTCAGATGGCTAAAGCACCTGTCCAGAAATATGCTGACCAGATTTCCAAATACTTTGTTCCAATAGTGATTGTGTTATCTCTTTCAACATGGATATCATGGTTTGTAGCTGGAAAGTTGCATTCATACCCAAAATCATGGATACCATCTTCTATGAATAGTTTTGAGCTTGCACTTCAGTTTGGAATTTCAGTCATGGTCATAGCTTGTCCTTGTGCTCTAGGCCTAGCCACTCCTACAGCGGTCATGGTTGGTACCGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGTGGCCAAGCATTAGAAAGTGCACACAAGGTGAATTGCATTGTGTTTGATAAGACAGGAACTCTGACTATTGGGAAGCCAGTGGTTGTAACTACAAAACTCTTCAAGAATATGTCAGTTAAAGATTTCTATGAACTTGTTGCTGCAGCAGAGGCAAGGCTTCTTGTGAATAGTGAACATCCAATAGCAAAGTCCATTGTTGATCATGCCAAAAATATCACACAAGATGAACAAAATCATTCATCATGGCCAGAAGCAAAAGAATTTGTGTCTATTGCAGGACATGGAGTGAAGGCAGTTGTTCAAAACAAGGAAATAATGGTTGGAAATAAAAAACTGATGTTAGATCATAACATAGCTATTTCATTGGAAGCAGAAGAAATACTAGCAGAAGCTGAAAACATGGCTCAAACAGGAATTTTGGTATCATTGGATGGGGAAATTGTTGGAGTTTTGGCTGTGTCTGATCCATTGAAACCGGATGCAAAAGAAGTTATTTCTATTCTTAAATCAAAGAAAATAAAGAGCATAATGGTGACAGGTGATAATTGGGGAACTGCAAATTCTATTGCTAGACAAGCTGGTATTGAAACTGTCATGGCTGAGGCTCAACCTGAGACTAAAGCTACTAAAGTAAAGGAATTACAGAATTCTGGATACACTGTAGGAATGGTAGGAGATGGTATCAATGATTCACCAGCACTAGTAGCAGCTGATGTTGGAATGGCAATTGGTGCTGGAACAGACATTGCTATTGAAGCAGCTGACATTGTTCTTATGAAGAGTAACTTAGAGGATATAATAATTGCCATTGACCTTGCAAAGAAAACTTTCTCACGTATACGTCTAAATTACATTTGGGCTTTAGGTTATAATATTCTAGCCATTCCTATTGCTGCTGGCATACTTTTTCCTTCTACTAGATTTAGGTTACCCCCTTGGATTGCTGGAGCTGCAATGGCTGCTTCTTCTATCAGTGTTGTTTGCTCTTCTCTCTTGTTGAAGAAATACAAGAAACCAACCAAGCTGAATAACTTGGAGATTAATGGTATTCAGATTGAATAA

Protein sequence

>Msa1193940

MRFSDSAKLMESAIFIFSQLLQYLEESIREAIEDAGFEAKSMEDDSSNNTSFQICRVHIGGMTCTSCSSNVQSALQSLRGVQIAQVALATEEAEIRYDPKIITYTQLMETISNTGFNPILISKGEHISKIELKIDGIKNEQSMYIIEQSLRTLQGVETIETYLDINKIVLTYKPYMTGPRTFIELIESSGSGCFRATIFPNDGGRKAHKQEEINRYFKLLIWSLVFTVPVFLTSMVLMYIPGVKDVLEVKIVNMLNIGLLIRWEFSTPVQFVIGRRFYVGAYKALSKGYANMDLLIALGTNAAYFYSVYVVGRATFSSHFEGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPDTATLLTLDDDKGNVIGEREIDSRLIQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEAKPVAKMKGDMVIGGTVNENGVLHVKVTRVGSETALSQIVRLVESAQMAKAPVQKYADQISKYFVPIVIVLSLSTWISWFVAGKLHSYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVVVTTKLFKNMSVKDFYELVAAAEARLLVNSEHPIAKSIVDHAKNITQDEQNHSSWPEAKEFVSIAGHGVKAVVQNKEIMVGNKKLMLDHNIAISLEAEEILAEAENMAQTGILVSLDGEIVGVLAVSDPLKPDAKEVISILKSKKIKSIMVTGDNWGTANSIARQAGIETVMAEAQPETKATKVKELQNSGYTVGMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLAKKTFSRIRLNYIWALGYNILAIPIAAGILFPSTRFRLPPWIAGAAMAASSISVVCSSLLLKKYKKPTKLNNLEINGIQIE*