AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244380 MtrunA17_Chr2g0298101 98.750 320 2 1 1 320 1 318 0.0 653
Msa0244380 MtrunA17_Chr5g0396951 67.347 294 94 1 12 305 13 304 9.99e-156 437
Msa0244380 MtrunA17_Chr4g0049381 65.781 301 100 2 16 315 16 314 2.91e-151 427
Msa0244380 MtrunA17_Chr7g0275331 65.116 301 102 2 16 315 16 314 3.14e-151 427
Msa0244380 MtrunA17_Chr6g0449291 60.535 299 113 4 21 319 10 303 3.60e-129 370
Msa0244380 MtrunA17_Chr4g0000451 81.868 182 33 0 136 317 6 187 7.13e-114 327
Msa0244380 MtrunA17_Chr4g0000441 68.103 116 37 0 19 134 31 146 5.30e-57 181
Msa0244380 MtrunA17_Chr5g0404381 34.146 287 168 7 16 300 43 310 7.67e-42 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244380 AT5G57330.1 80.000 305 61 0 14 318 8 312 0.0 528
Msa0244380 AT3G61610.1 65.667 300 100 2 16 314 16 313 4.10e-151 427
Msa0244380 AT3G61610.2 65.667 300 100 2 16 314 10 307 4.41e-151 426
Msa0244380 AT3G01590.1 63.880 299 104 3 21 319 10 304 3.51e-143 406
Msa0244380 AT3G01590.2 63.880 299 104 3 21 319 10 304 3.51e-143 406
Msa0244380 AT5G14500.1 63.211 299 106 3 21 319 10 304 5.78e-142 403
Msa0244380 AT4G23730.1 63.356 292 103 3 16 305 17 306 2.46e-140 399
Msa0244380 AT4G23730.3 62.416 298 102 4 16 305 17 312 3.10e-138 394
Msa0244380 AT5G14500.2 58.333 324 106 4 21 319 10 329 7.78e-136 389
Msa0244380 AT4G23730.2 64.207 271 93 3 37 305 3 271 8.94e-133 379
Msa0244380 AT4G25900.1 59.170 289 111 3 17 305 34 315 8.23e-128 368
Msa0244380 AT5G66530.4 34.237 295 173 8 8 300 2 277 2.99e-46 158
Msa0244380 AT5G66530.1 34.237 295 173 8 8 300 30 305 5.56e-46 158
Msa0244380 AT5G66530.2 34.237 295 173 8 8 300 30 305 5.56e-46 158
Msa0244380 AT5G66530.3 34.237 295 173 8 8 300 30 305 5.56e-46 158

Find 132 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCATTCACTTAGTATTT+TGG 0.138940 2_2:-22641383 Msa0244380:three_prime_UTR
ACTTTATGATTATAATTTAA+AGG 0.190641 2_2:-22641293 Msa0244380:three_prime_UTR
TTTAATAATAAACAAATTAT+AGG 0.212964 2_2:+22641349 None:intergenic
TGTTTATTATTAAATGCTAT+TGG 0.238326 2_2:-22641340 Msa0244380:three_prime_UTR
TTGAAAATCTGTTGAATTGT+AGG 0.238694 2_2:+22641444 None:intergenic
TATGAATTTCTCGGGTTCTT+TGG 0.244157 2_2:+22647748 None:intergenic
CAAAGTCTATGGCTGATTTC+GGG 0.245986 2_2:-22642349 Msa0244380:CDS
GTAGCTTGTTGCAAAGTTAA+TGG 0.276283 2_2:-22641679 Msa0244380:three_prime_UTR
TAAGCAAATGTGAACGAAAA+TGG 0.285438 2_2:+22644769 None:intergenic
AGCATATATTTAAAATAAAA+AGG 0.287974 2_2:+22641186 None:intergenic
CAGGTTGTGTCAAATATTTA+TGG 0.297497 2_2:-22641249 Msa0244380:three_prime_UTR
GCAAAGTCTATGGCTGATTT+CGG 0.300409 2_2:-22642350 Msa0244380:CDS
CCACATTAGTCATCCATTAT+AGG 0.307361 2_2:+22641540 None:intergenic
TTAATAATAAACAAATTATA+GGG 0.310118 2_2:+22641350 None:intergenic
TGATCCCCAGAGAGTTCTTC+AGG 0.316466 2_2:-22642192 Msa0244380:CDS
CTTTATGATTATAATTTAAA+GGG 0.321424 2_2:-22641292 Msa0244380:three_prime_UTR
CACATGGATTTGCTAGAAAT+CGG 0.325106 2_2:-22645137 Msa0244380:CDS
TTCAGTGAAGTTCGGGTAGA+AGG 0.327252 2_2:-22643792 Msa0244380:intron
TACTAGTGGTGTGGAATCCT+TGG 0.327612 2_2:-22642382 Msa0244380:intron
AAAAGGAATCCCTCTGGGTC+TGG 0.331384 2_2:+22641406 None:intergenic
ACATGCAGGGGCAAAATTAC+AGG 0.335699 2_2:+22641640 None:intergenic
GGTAAAGAAGTGGGGAAAAC+AGG 0.340045 2_2:+22641207 None:intergenic
GTTTATTATTAAATGCTATT+GGG 0.347612 2_2:-22641339 Msa0244380:three_prime_UTR
TCAATGATTGCAATCTTTGT+AGG 0.348711 2_2:+22642958 None:intergenic
CATACTTGTGGAAAGCATAT+TGG 0.354504 2_2:+22646189 None:intergenic
CCTAACAGTTGAAGCTCTAT+AGG 0.364297 2_2:+22647613 None:intergenic
CTCAAATTATTTGTTGGAAA+AGG 0.368191 2_2:+22645087 None:intergenic
CTTCCTTTCCATTCTTCTCC+AGG 0.370137 2_2:+22642260 None:intergenic
CACATTAGTCATCCATTATA+GGG 0.370282 2_2:+22641541 None:intergenic
TGATGTTGACATCTCGAATT+CGG 0.375753 2_2:-22644813 Msa0244380:CDS
ATCGAGACCATTGATACCTT+TGG 0.378504 2_2:+22647512 None:intergenic
CAAGGAGCGCTTTACTGAAC+AGG 0.381888 2_2:-22643733 Msa0244380:CDS
GATTTGCTAGAAATCGGGTT+TGG 0.388396 2_2:-22645131 Msa0244380:CDS
GCATGTGTTCAGTGAAGTTC+GGG 0.389823 2_2:-22643799 Msa0244380:intron
TGCATGTGTTCAGTGAAGTT+CGG 0.389851 2_2:-22643800 Msa0244380:intron
CGCCGTGTGTATGAATTTCT+CGG 0.391393 2_2:+22647739 None:intergenic
AGGTTGTGTCAAATATTTAT+GGG 0.393955 2_2:-22641248 Msa0244380:three_prime_UTR
CCTATAGAGCTTCAACTGTT+AGG 0.395768 2_2:-22647613 Msa0244380:five_prime_UTR
AAGATGAATTCATGTTGGTT+AGG 0.399082 2_2:-22641602 Msa0244380:three_prime_UTR
ATTTGCTAGAAATCGGGTTT+GGG 0.400244 2_2:-22645130 Msa0244380:CDS
GTACCGTCTGAGGGTAGCTT+TGG 0.409016 2_2:-22644851 Msa0244380:CDS
CTGAAGAAGACATGAAGATC+TGG 0.413789 2_2:-22645032 Msa0244380:CDS
AGCTGCCCTGAAGAACTCTC+TGG 0.420120 2_2:+22642186 None:intergenic
GTTTGCAAACCATGGAAACT+TGG 0.421066 2_2:-22645163 Msa0244380:CDS
AAAGTGTTTAGTGTCGTTGT+TGG 0.426061 2_2:+22647705 None:intergenic
GGATAAGAAAGCAAAGTCTA+TGG 0.429417 2_2:-22642360 Msa0244380:CDS
GCTTTGCTCAAATTATTTGT+TGG 0.430674 2_2:+22645081 None:intergenic
CTGTGTTCTGTGTCCTGTAC+AGG 0.434353 2_2:-22642151 Msa0244380:intron
ACTAGTGGTGTGGAATCCTT+GGG 0.437044 2_2:-22642381 Msa0244380:intron
ATCTTCATGTCTTCTTCAGA+GGG 0.440145 2_2:+22645036 None:intergenic
TACCGTCTGAGGGTAGCTTT+GGG 0.445671 2_2:-22644850 Msa0244380:CDS
TTGGGTAATTACTACATCCT+TGG 0.451032 2_2:-22641321 Msa0244380:three_prime_UTR
GATCTTCATGTCTTCTTCAG+AGG 0.451439 2_2:+22645035 None:intergenic
CATGTGATTCCAAGTTTCCA+TGG 0.458751 2_2:+22645154 None:intergenic
ACATGGATTTGCTAGAAATC+GGG 0.458820 2_2:-22645136 Msa0244380:CDS
AGATAGTACTGACCAGCATC+AGG 0.460058 2_2:+22642892 None:intergenic
AAAGGAATCCCTCTGGGTCT+GGG 0.469403 2_2:+22641407 None:intergenic
TTTGCAGTATTTACCTGTAC+AGG 0.472229 2_2:+22642138 None:intergenic
CTGAGGGTAGCTTTGGGACC+CGG 0.476818 2_2:-22644844 Msa0244380:CDS
CTTTGAAACCTGGAGAAGAA+TGG 0.477692 2_2:-22642268 Msa0244380:CDS
GACTTTGCTTTCTTATCCCA+AGG 0.482545 2_2:+22642365 None:intergenic
GATACCTTTGGTTAACGTAA+AGG 0.483563 2_2:+22647524 None:intergenic
TATATTTATACTCGTTGTTG+TGG 0.486476 2_2:+22647636 None:intergenic
TGTCAACATCAAATCTCCTC+CGG 0.489606 2_2:+22644825 None:intergenic
ACGTTAACCAAAGGTATCAA+TGG 0.500062 2_2:-22647519 Msa0244380:CDS
GCCGTGTGTATGAATTTCTC+GGG 0.505192 2_2:+22647740 None:intergenic
TTATTTGTTGGAAAAGGAGG+AGG 0.506185 2_2:+22645093 None:intergenic
CAGACTTACTTCTGATTCAA+AGG 0.510507 2_2:+22643698 None:intergenic
TGCCCACTACAGTAACTAGA+TGG 0.512664 2_2:+22642218 None:intergenic
AGAGGCTGCTAATATTGAAA+AGG 0.515286 2_2:-22642297 Msa0244380:CDS
AAAGATGGCCTTCCTGATGC+TGG 0.515378 2_2:-22642904 Msa0244380:intron
TTGCAAAGTTAATGGATGAA+AGG 0.516792 2_2:-22641671 Msa0244380:three_prime_UTR
AGAGTCCACATTTCTTGCCA+TGG 0.516946 2_2:-22641483 Msa0244380:three_prime_UTR
TTCCATCTAGTTACTGTAGT+GGG 0.517507 2_2:-22642220 Msa0244380:CDS
AGGTATCAATGGTCTCGATA+AGG 0.518328 2_2:-22647508 Msa0244380:CDS
TGATTCAAAAGGAATCCCTC+TGG 0.522994 2_2:+22641400 None:intergenic
AGGAGGAGGGTCATCTTCAA+TGG 0.524499 2_2:+22645107 None:intergenic
GGTAGAAGGATTAGAGACCT+TGG 0.525941 2_2:-22643778 Msa0244380:CDS
TACTAAGTGAATGATTCAAA+AGG 0.527311 2_2:+22641389 None:intergenic
AAATTATTTGTTGGAAAAGG+AGG 0.527511 2_2:+22645090 None:intergenic
GCTGCCCTGAAGAACTCTCT+GGG 0.528642 2_2:+22642187 None:intergenic
GGCTATCTTTAAGCCTCCTA+AGG 0.532351 2_2:-22646229 Msa0244380:CDS
ATCCCTCCACGAATAGCCTT+AGG 0.532408 2_2:+22646213 None:intergenic
ACATGAAGATCTGGAATCAC+AGG 0.534377 2_2:-22645023 Msa0244380:intron
CATGGAAACTTGGAATCACA+TGG 0.537927 2_2:-22645153 Msa0244380:CDS
CCTGCATGTTCCATCTGTGT+TGG 0.550080 2_2:-22641626 Msa0244380:three_prime_UTR
AAGCCTCCTAAGGCTATTCG+TGG 0.556125 2_2:-22646219 Msa0244380:CDS
TATTTGCAGTTTGCAAACCA+TGG 0.562559 2_2:-22645171 Msa0244380:intron
CCAACACAGATGGAACATGC+AGG 0.562888 2_2:+22641626 None:intergenic
TAAGCATATGCTTTGTGTAG+AGG 0.564500 2_2:-22642315 Msa0244380:CDS
GATTCAAAAGGAATCCCTCT+GGG 0.564747 2_2:+22641401 None:intergenic
ATTCATCTTTCCAACACAGA+TGG 0.565820 2_2:+22641616 None:intergenic
TTCGGAACACAAACAGTGAT+GGG 0.567587 2_2:-22644795 Msa0244380:CDS
GATCCCCAGAGAGTTCTTCA+GGG 0.569162 2_2:-22642191 Msa0244380:CDS
ATTCGGAACACAAACAGTGA+TGG 0.572579 2_2:-22644796 Msa0244380:CDS
AAGGCTATCACTTTGAAACC+TGG 0.573783 2_2:-22642278 Msa0244380:CDS
TTGGAAAGATGAATTCATGT+TGG 0.574760 2_2:-22641607 Msa0244380:three_prime_UTR
ACGGTGGACATGTGACTTCG+TGG 0.575222 2_2:-22647139 Msa0244380:CDS
CTCCTAAGGCTATTCGTGGA+GGG 0.577936 2_2:-22646215 Msa0244380:CDS
TATTTGTTGGAAAAGGAGGA+GGG 0.579815 2_2:+22645094 None:intergenic
TCTTGACAACTTGCAGAACA+AGG 0.580190 2_2:-22643751 Msa0244380:CDS
TGCATGACAGAATCGTCGAC+AGG 0.580658 2_2:-22641268 Msa0244380:three_prime_UTR
GTCAACATCAAATCTCCTCC+GGG 0.583810 2_2:+22644826 None:intergenic
CAAGTTGTCAAGATAATCCA+AGG 0.585326 2_2:+22643761 None:intergenic
TCTTCCTTTACGTTAACCAA+AGG 0.595171 2_2:-22647528 Msa0244380:CDS
CATGCAGGGGCAAAATTACA+GGG 0.598780 2_2:+22641641 None:intergenic
TTTAAGAATCAAATCAACAA+AGG 0.599913 2_2:+22645059 None:intergenic
CCTCCACGAATAGCCTTAGG+AGG 0.604158 2_2:+22646216 None:intergenic
ATCTCGTGGCGCTTCCGCTG+AGG 0.604527 2_2:-22647472 Msa0244380:intron
GTTCTTCTTCGTGAATCTCG+TGG 0.608797 2_2:-22647486 Msa0244380:CDS
CCTATAATGGATGACTAATG+TGG 0.609923 2_2:-22641540 Msa0244380:three_prime_UTR
CAACACAGATGGAACATGCA+GGG 0.612106 2_2:+22641627 None:intergenic
AAACCTGGAGAAGAATGGAA+AGG 0.623143 2_2:-22642263 Msa0244380:CDS
TTGTAGATTTATCTGTACGG+TGG 0.625261 2_2:-22647155 Msa0244380:intron
AAAGTCTATGGCTGATTTCG+GGG 0.626184 2_2:-22642348 Msa0244380:CDS
GATTTGTAGATTTATCTGTA+CGG 0.629615 2_2:-22647158 Msa0244380:intron
GTCCCAAAGCTACCCTCAGA+CGG 0.631656 2_2:+22644848 None:intergenic
AACACAGATGGAACATGCAG+GGG 0.635228 2_2:+22641628 None:intergenic
TAATCATAAAGTATTCTCCA+AGG 0.638797 2_2:+22641304 None:intergenic
CCTCCTAAGGCTATTCGTGG+AGG 0.641484 2_2:-22646216 Msa0244380:CDS
AGTACTGACCAGCATCAGGA+AGG 0.642555 2_2:+22642896 None:intergenic
GTTCCATCTAGTTACTGTAG+TGG 0.643465 2_2:-22642221 Msa0244380:CDS
TTGAATGGCCCAGACCCAGA+GGG 0.654178 2_2:-22641415 Msa0244380:three_prime_UTR
ACCCGAGAAATTCATACACA+CGG 0.664013 2_2:-22647741 Msa0244380:five_prime_UTR
AAGGAGCGCTTTACTGAACA+GGG 0.674715 2_2:-22643732 Msa0244380:CDS
CTGCCCTGAAGAACTCTCTG+GGG 0.675919 2_2:+22642188 None:intergenic
ATTAGTCATCCATTATAGGG+AGG 0.677435 2_2:+22641544 None:intergenic
GTGGAAGAATGATCATGCTG+AGG 0.679697 2_2:-22647120 Msa0244380:CDS
AGGGTAGCTTTGGGACCCGG+AGG 0.683403 2_2:-22644841 Msa0244380:CDS
GTTGAATGGCCCAGACCCAG+AGG 0.688567 2_2:-22641416 Msa0244380:three_prime_UTR
CGGTTACGATTATACCTCAG+CGG 0.755309 2_2:+22647458 None:intergenic
CGAGAAATTCATACACACGG+CGG 0.820577 2_2:-22647738 Msa0244380:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTCAAAAAAAAATAAAA+AGG + chr2_2:22642833-22642852 None:intergenic 10.0%
!! TTAATTATATCAATTTCTAT+TGG + chr2_2:22643678-22643697 None:intergenic 10.0%
!! CAAATTAATATACTATTAAT+TGG - chr2_2:22644430-22644449 Msa0244380:intron 10.0%
!!! ATAACTTTTTTTTGAAAAAA+AGG - chr2_2:22645411-22645430 Msa0244380:intron 10.0%
!!! TTATTATTTTTTTTTACTAG+TGG - chr2_2:22646588-22646607 Msa0244380:intron 10.0%
!!! ATTTAACTTTTTTAATCTTT+TGG + chr2_2:22647058-22647077 None:intergenic 10.0%
!! ACTTTATGATTATAATTTAA+AGG - chr2_2:22647691-22647710 Msa0244380:five_prime_UTR 10.0%
!! CTTTATGATTATAATTTAAA+GGG - chr2_2:22647692-22647711 Msa0244380:five_prime_UTR 10.0%
!!! AGCATATATTTAAAATAAAA+AGG + chr2_2:22647801-22647820 None:intergenic 10.0%
!! TATATCATAATACTAAATTG+CGG + chr2_2:22642221-22642240 None:intergenic 15.0%
!! AAATCATTACAATTTCTAAA+TGG - chr2_2:22643723-22643742 Msa0244380:CDS 15.0%
!!! TTACAATTTTTTTTAATACC+TGG - chr2_2:22644011-22644030 Msa0244380:intron 15.0%
!! TAAAATTAATGAAATGTTGT+TGG + chr2_2:22644405-22644424 None:intergenic 15.0%
!! AAAAAAGTTATTCAAATGAA+AGG + chr2_2:22645402-22645421 None:intergenic 15.0%
!! TAAATATAAAAGAACAGATA+AGG - chr2_2:22646156-22646175 Msa0244380:intron 15.0%
!!! ATAAACCTTTTATTACAATT+AGG - chr2_2:22646517-22646536 Msa0244380:intron 15.0%
!!! TTTTTTGTATCAAAAACTAA+AGG + chr2_2:22646952-22646971 None:intergenic 15.0%
!! TGTTTATTATTAAATGCTAT+TGG - chr2_2:22647644-22647663 Msa0244380:five_prime_UTR 15.0%
!! GTTTATTATTAAATGCTATT+GGG - chr2_2:22647645-22647664 Msa0244380:five_prime_UTR 15.0%
!!! GAATCTAGAATAATTGAAAT+CGG + chr2_2:22641613-22641632 None:intergenic 20.0%
!! CATTAATCGTTGTTAATTAA+CGG - chr2_2:22641684-22641703 Msa0244380:intron 20.0%
!! AAAAGGAAAATGAAAAATAG+AGG - chr2_2:22642058-22642077 Msa0244380:intron 20.0%
!! ATTACAACAACAACAAAAAA+AGG + chr2_2:22642162-22642181 None:intergenic 20.0%
!! TTGAAGCAAATATTAATATC+AGG + chr2_2:22642555-22642574 None:intergenic 20.0%
!! GATATTAATATTTGCTTCAA+TGG - chr2_2:22642555-22642574 Msa0244380:intron 20.0%
!! TTGATTAGATGATTGATATA+TGG - chr2_2:22642695-22642714 Msa0244380:intron 20.0%
!! TTAACAACAATGTTAATTGA+GGG - chr2_2:22643204-22643223 Msa0244380:intron 20.0%
!!! AAAGAAAGTTTTCATTATCT+TGG + chr2_2:22643570-22643589 None:intergenic 20.0%
!! TTTAAGAATCAAATCAACAA+AGG + chr2_2:22643928-22643947 None:intergenic 20.0%
!!! TGCTTATCATACTTATTTTT+CGG - chr2_2:22644232-22644251 Msa0244380:intron 20.0%
!! AAAAGAACAAGAAATATATG+TGG + chr2_2:22645095-22645114 None:intergenic 20.0%
!!! TAGCTTTACTTTCTAAAAAT+TGG - chr2_2:22645115-22645134 Msa0244380:CDS 20.0%
!! ATTCATTTGACTGAAATAAA+TGG - chr2_2:22645369-22645388 Msa0244380:intron 20.0%
!! AGAATAAGTATAGAATAAAG+GGG + chr2_2:22645689-22645708 None:intergenic 20.0%
!! CAGAATAAGTATAGAATAAA+GGG + chr2_2:22645690-22645709 None:intergenic 20.0%
!! ACAGAATAAGTATAGAATAA+AGG + chr2_2:22645691-22645710 None:intergenic 20.0%
!! TTCTATACTTATTCTGTAAT+AGG - chr2_2:22645694-22645713 Msa0244380:intron 20.0%
!! TCTATACTTATTCTGTAATA+GGG - chr2_2:22645695-22645714 Msa0244380:intron 20.0%
!! ATTAGAGTTTAGAAAAATAC+AGG + chr2_2:22645864-22645883 None:intergenic 20.0%
!! TACAACCTAATTGTAATAAA+AGG + chr2_2:22646525-22646544 None:intergenic 20.0%
!! ATATATAGACTTAAAAACTG+TGG + chr2_2:22646992-22647011 None:intergenic 20.0%
!! AGATATTTAAATGGATATGA+AGG + chr2_2:22647256-22647275 None:intergenic 20.0%
!! TTCATATCCATTTAAATATC+TGG - chr2_2:22647255-22647274 Msa0244380:intron 20.0%
!! AAATAAAAAGGTAAAGAAGT+GGG + chr2_2:22647789-22647808 None:intergenic 20.0%
!! AAAATAAAAAGGTAAAGAAG+TGG + chr2_2:22647790-22647809 None:intergenic 20.0%
! TATATTTATACTCGTTGTTG+TGG + chr2_2:22641351-22641370 None:intergenic 25.0%
! ATAGATCAAGAACAGAAAAA+CGG + chr2_2:22641549-22641568 None:intergenic 25.0%
! ATTTGACTGTGAAATTTAGA+AGG - chr2_2:22641741-22641760 Msa0244380:intron 25.0%
! GATTTGTAGATTTATCTGTA+CGG - chr2_2:22641826-22641845 Msa0244380:intron 25.0%
!! TCGATAATTTTCTATCGAAA+AGG - chr2_2:22642041-22642060 Msa0244380:intron 25.0%
!!! CTGTATTCTTTTTTAGATCA+CGG - chr2_2:22642084-22642103 Msa0244380:intron 25.0%
!! CGATTAATTAGAGTATCTTT+AGG - chr2_2:22642323-22642342 Msa0244380:CDS 25.0%
! CAGAGCTAACTAATTAAAAT+TGG - chr2_2:22642473-22642492 Msa0244380:intron 25.0%
!! AAAATTGGCTTCAAAATGAA+CGG - chr2_2:22642488-22642507 Msa0244380:intron 25.0%
! AAATAGTAAGTACATACTTG+TGG + chr2_2:22642810-22642829 None:intergenic 25.0%
!!! AAAGTCAGAGTTTAAGTTTT+AGG + chr2_2:22642900-22642919 None:intergenic 25.0%
! TAAGCTAGGATTTATATTTG+TGG + chr2_2:22642935-22642954 None:intergenic 25.0%
!!! ATCGAATTTAATTTTCTCAC+AGG + chr2_2:22642965-22642984 None:intergenic 25.0%
!! TATCTAATATGTTGACTACT+TGG + chr2_2:22643163-22643182 None:intergenic 25.0%
! GTTAACAACAATGTTAATTG+AGG - chr2_2:22643203-22643222 Msa0244380:intron 25.0%
! TATGTGCATACAAGTTATTA+TGG - chr2_2:22643341-22643360 Msa0244380:intron 25.0%
! AGTTTAATGTTGTGATTTAG+AGG + chr2_2:22643380-22643399 None:intergenic 25.0%
!! AAATTATTTGTTGGAAAAGG+AGG + chr2_2:22643897-22643916 None:intergenic 25.0%
!! CTCAAATTATTTGTTGGAAA+AGG + chr2_2:22643900-22643919 None:intergenic 25.0%
! GAAGATATTAAAGTTAAACC+AGG + chr2_2:22644032-22644051 None:intergenic 25.0%
! CAGCTGAATTTATAATAGAA+AGG - chr2_2:22644476-22644495 Msa0244380:intron 25.0%
!!! TTTGTTTTTTGTATAGCTCA+AGG - chr2_2:22644590-22644609 Msa0244380:intron 25.0%
!!! TTGTTTTTTGTATAGCTCAA+GGG - chr2_2:22644591-22644610 Msa0244380:intron 25.0%
!! AAATTTGTAGCTTGCAAATT+CGG - chr2_2:22644946-22644965 Msa0244380:intron 25.0%
! TAAAAGCAAGAAACATATGT+AGG + chr2_2:22645067-22645086 None:intergenic 25.0%
!! TACTTTCTAAAAATTGGTTG+TGG - chr2_2:22645121-22645140 Msa0244380:CDS 25.0%
! TAACCTGAAACTAAATAGAA+GGG + chr2_2:22645318-22645337 None:intergenic 25.0%
! TTAACCTGAAACTAAATAGA+AGG + chr2_2:22645319-22645338 None:intergenic 25.0%
! TCAATATTTCACATAACAAG+CGG + chr2_2:22645445-22645464 None:intergenic 25.0%
! ACAATATATAGTTCCTGAAA+AGG - chr2_2:22645466-22645485 Msa0244380:intron 25.0%
!! AAAAAATGAAAAGCCTTTTC+AGG + chr2_2:22645482-22645501 None:intergenic 25.0%
! TTTGGTATGAATTCATCAAT+AGG + chr2_2:22645528-22645547 None:intergenic 25.0%
! CTATACTTATTCTGTAATAG+GGG - chr2_2:22645696-22645715 Msa0244380:intron 25.0%
!!! TTCACAGGTTTTTTTTTTTG+AGG - chr2_2:22645917-22645936 Msa0244380:intron 25.0%
! ATCATTTCAAGAAAAAGAGA+AGG + chr2_2:22645980-22645999 None:intergenic 25.0%
!! TCTCTTTTTCTTGAAATGAT+AGG - chr2_2:22645980-22645999 Msa0244380:intron 25.0%
! TCATTGATCATGAAAAAAAG+AGG - chr2_2:22646042-22646061 Msa0244380:intron 25.0%
! ACAACTTTACAGGAAAATAT+TGG + chr2_2:22646254-22646273 None:intergenic 25.0%
! AGTATATCTTACAACTTTAC+AGG + chr2_2:22646264-22646283 None:intergenic 25.0%
!!! TTGTAATACAGTAGTCTTAT+GGG - chr2_2:22646412-22646431 Msa0244380:intron 25.0%
! TTAATTTCATACTTGAGTGT+AGG + chr2_2:22646483-22646502 None:intergenic 25.0%
! TCTAAGTTATCAAATTTGAG+TGG - chr2_2:22646548-22646567 Msa0244380:intron 25.0%
!!! ATTTTTTTTTACTAGTGGTG+TGG - chr2_2:22646593-22646612 Msa0244380:intron 25.0%
! TTGTATCAAAAACTAAAGGT+AGG + chr2_2:22646948-22646967 None:intergenic 25.0%
!! TTTAAAAGCACATAATTGTC+TGG + chr2_2:22647134-22647153 None:intergenic 25.0%
!! TCATTAGAGTATCAAGATAT+GGG + chr2_2:22647165-22647184 None:intergenic 25.0%
!! ATCATTAGAGTATCAAGATA+TGG + chr2_2:22647166-22647185 None:intergenic 25.0%
! AAGACCAGAAAAAAAAAAAG+AGG + chr2_2:22647214-22647233 None:intergenic 25.0%
!! AGATTAGCCAGATATTTAAA+TGG + chr2_2:22647265-22647284 None:intergenic 25.0%
! TTGAAAATCTGTTGAATTGT+AGG + chr2_2:22647543-22647562 None:intergenic 25.0%
! TACTAAGTGAATGATTCAAA+AGG + chr2_2:22647598-22647617 None:intergenic 25.0%
!! GAATCATTCACTTAGTATTT+TGG - chr2_2:22647601-22647620 Msa0244380:five_prime_UTR 25.0%
!! TAATCATAAAGTATTCTCCA+AGG + chr2_2:22647683-22647702 None:intergenic 25.0%
! AGGTTGTGTCAAATATTTAT+GGG - chr2_2:22647736-22647755 Msa0244380:five_prime_UTR 25.0%
! AATAAAAAGGTAAAGAAGTG+GGG + chr2_2:22647788-22647807 None:intergenic 25.0%
AATTATTCTAGATTCCGATC+TGG - chr2_2:22641618-22641637 Msa0244380:three_prime_UTR 30.0%
!!! ATTGCTTTTTCTCAGTAGTA+AGG - chr2_2:22641888-22641907 Msa0244380:intron 30.0%
! TTACGAAACTGTGTTTGTTT+TGG - chr2_2:22641926-22641945 Msa0244380:intron 30.0%
!!! GTTTTGGTTGATTTTAGTGT+TGG - chr2_2:22641942-22641961 Msa0244380:intron 30.0%
CGAAAAATCTTCTATCGAAA+AGG - chr2_2:22641999-22642018 Msa0244380:intron 30.0%
TACATACAATGCTTCATTGT+CGG + chr2_2:22642406-22642425 None:intergenic 30.0%
!! CAATGAAGCATTGTATGTAT+CGG - chr2_2:22642407-22642426 Msa0244380:intron 30.0%
! AAATTGGCTTCAAAATGAAC+GGG - chr2_2:22642489-22642508 Msa0244380:intron 30.0%
CAAAACATTTACCCTTAATC+CGG + chr2_2:22642589-22642608 None:intergenic 30.0%
GATGCAACAAAATCAAATCA+AGG + chr2_2:22643052-22643071 None:intergenic 30.0%
TTGTTAACTACTCTAAGTAG+AGG + chr2_2:22643191-22643210 None:intergenic 30.0%
! TAGAATTGTTGCTTCTAGAT+TGG + chr2_2:22643443-22643462 None:intergenic 30.0%
AGCAACAATTCTAGATATCT+AGG - chr2_2:22643450-22643469 Msa0244380:intron 30.0%
GATGAAATTACTGAAAACAG+AGG - chr2_2:22643520-22643539 Msa0244380:intron 30.0%
!! TATTGGTTTCGTTGTTTCTT+GGG + chr2_2:22643661-22643680 None:intergenic 30.0%
ATAACAACAAACACAAGTTC+TGG + chr2_2:22643753-22643772 None:intergenic 30.0%
GCTTTGCTCAAATTATTTGT+TGG + chr2_2:22643906-22643925 None:intergenic 30.0%
TAAGCAAATGTGAACGAAAA+TGG + chr2_2:22644218-22644237 None:intergenic 30.0%
!! ATTTTTCGGTATCAGACATA+AGG - chr2_2:22644246-22644265 Msa0244380:intron 30.0%
! TTTTGTCTGTTTTGTAACCA+TGG - chr2_2:22644365-22644384 Msa0244380:intron 30.0%
! GGTTTAGTTGTTGTATCTTT+TGG - chr2_2:22644658-22644677 Msa0244380:intron 30.0%
TGAACTTACAAAAACAAGTG+TGG - chr2_2:22644833-22644852 Msa0244380:CDS 30.0%
TTTGAATCAGAAGTAAGTCT+GGG - chr2_2:22645288-22645307 Msa0244380:intron 30.0%
! TTTCCCTTCTATTTAGTTTC+AGG - chr2_2:22645312-22645331 Msa0244380:intron 30.0%
!!! TTAAGAGATGCTGGTTTTAT+AGG - chr2_2:22645335-22645354 Msa0244380:intron 30.0%
GTTTCATTCAGATATAGGTT+GGG + chr2_2:22645788-22645807 None:intergenic 30.0%
TGTTTCATTCAGATATAGGT+TGG + chr2_2:22645789-22645808 None:intergenic 30.0%
GACATGTTTCATTCAGATAT+AGG + chr2_2:22645793-22645812 None:intergenic 30.0%
!! TTTTTGAGGAAATGTTTCAC+AGG - chr2_2:22645931-22645950 Msa0244380:intron 30.0%
!!! ATGTTTCACAGGTTTTTTGT+TGG - chr2_2:22645942-22645961 Msa0244380:intron 30.0%
TCAATGATTGCAATCTTTGT+AGG + chr2_2:22646029-22646048 None:intergenic 30.0%
!!! ACATTTGTTTTGCGTAAAGA+TGG - chr2_2:22646065-22646084 Msa0244380:intron 30.0%
TTACAGGAAAATATTGGACA+TGG + chr2_2:22646248-22646267 None:intergenic 30.0%
TACTACCAAGTAACAATACA+AGG - chr2_2:22646280-22646299 Msa0244380:intron 30.0%
ACTTTCCTTGTATTGTTACT+TGG + chr2_2:22646288-22646307 None:intergenic 30.0%
! GTTGTAATACAGTAGTCTTA+TGG - chr2_2:22646411-22646430 Msa0244380:intron 30.0%
AGGTAGGATAATGTAAGTAA+AGG + chr2_2:22646932-22646951 None:intergenic 30.0%
!! TATTTTAAGCATAACAGAGC+AGG - chr2_2:22647009-22647028 Msa0244380:intron 30.0%
TGATACTCTAATGATCTGAT+TGG - chr2_2:22647171-22647190 Msa0244380:intron 30.0%
!!! GGAACCTCTTTTTTTTTTTC+TGG - chr2_2:22647207-22647226 Msa0244380:intron 30.0%
! CTTTTGAATGATTTATCTGC+AGG - chr2_2:22647283-22647302 Msa0244380:intron 30.0%
! TTGCAAAGTTAATGGATGAA+AGG - chr2_2:22647313-22647332 Msa0244380:intron 30.0%
TTGGAAAGATGAATTCATGT+TGG - chr2_2:22647377-22647396 Msa0244380:intron 30.0%
! AAGATGAATTCATGTTGGTT+AGG - chr2_2:22647382-22647401 Msa0244380:intron 30.0%
!!! TTTTTTCTTCCTCCCTATAA+TGG - chr2_2:22647431-22647450 Msa0244380:intron 30.0%
CACATTAGTCATCCATTATA+GGG + chr2_2:22647446-22647465 None:intergenic 30.0%
!!! GCAGTAATTTTGTTTTTCCA+TGG + chr2_2:22647521-22647540 None:intergenic 30.0%
!!! GATTTTCAAGTTGAGTTGAA+TGG - chr2_2:22647554-22647573 Msa0244380:CDS 30.0%
CAGGTTGTGTCAAATATTTA+TGG - chr2_2:22647735-22647754 Msa0244380:five_prime_UTR 30.0%
TATGAATTTCTCGGGTTCTT+TGG + chr2_2:22641239-22641258 None:intergenic 35.0%
! AAAGTGTTTAGTGTCGTTGT+TGG + chr2_2:22641282-22641301 None:intergenic 35.0%
TCTTCCTTTACGTTAACCAA+AGG - chr2_2:22641456-22641475 Msa0244380:three_prime_UTR 35.0%
GATACCTTTGGTTAACGTAA+AGG + chr2_2:22641463-22641482 None:intergenic 35.0%
!! ACGTTAACCAAAGGTATCAA+TGG - chr2_2:22641465-22641484 Msa0244380:three_prime_UTR 35.0%
CGAAATATACCTAACCAGAT+CGG + chr2_2:22641635-22641654 None:intergenic 35.0%
TGACTGTGAAATTTAGAAGG+AGG - chr2_2:22641744-22641763 Msa0244380:intron 35.0%
TAGAAGGAGGAAGAAGAAAA+AGG - chr2_2:22641757-22641776 Msa0244380:intron 35.0%
TTGTAGATTTATCTGTACGG+TGG - chr2_2:22641829-22641848 Msa0244380:intron 35.0%
! AGATTTTTCGCCAACAAACT+CGG + chr2_2:22641989-22642008 None:intergenic 35.0%
!! TAGATCACGGTTCTAAATTG+TGG - chr2_2:22642097-22642116 Msa0244380:intron 35.0%
ACCCATGATATCAAAGTTCA+CGG + chr2_2:22642123-22642142 None:intergenic 35.0%
GGTCTACAACTACAACATAA+AGG + chr2_2:22642200-22642219 None:intergenic 35.0%
! ACACATTCCATTAGAAGTGT+CGG - chr2_2:22642445-22642464 Msa0244380:intron 35.0%
CATCTAATCAACATGAAAGC+TGG + chr2_2:22642686-22642705 None:intergenic 35.0%
TATTATCTTGTTCCTTGTGC+AGG - chr2_2:22642734-22642753 Msa0244380:intron 35.0%
! CATACTTGTGGAAAGCATAT+TGG + chr2_2:22642798-22642817 None:intergenic 35.0%
TCACAGGAATGTAATAAGCT+AGG + chr2_2:22642949-22642968 None:intergenic 35.0%
AGCATAAGTCGTATTGAAGA+AGG - chr2_2:22642985-22643004 Msa0244380:CDS 35.0%
GCATAAGTCGTATTGAAGAA+GGG - chr2_2:22642986-22643005 Msa0244380:intron 35.0%
CATAAGTCGTATTGAAGAAG+GGG - chr2_2:22642987-22643006 Msa0244380:intron 35.0%
AATATGCCCAGTTCTCAAAA+CGG + chr2_2:22643105-22643124 None:intergenic 35.0%
ATTGAGGGTCTATGTAAGAT+TGG - chr2_2:22643219-22643238 Msa0244380:intron 35.0%
TTGAGGGTCTATGTAAGATT+GGG - chr2_2:22643220-22643239 Msa0244380:intron 35.0%
!! CTATTGGTTTCGTTGTTTCT+TGG + chr2_2:22643662-22643681 None:intergenic 35.0%
TATTTGCAGTTTGCAAACCA+TGG - chr2_2:22643813-22643832 Msa0244380:intron 35.0%
!! CACATGGATTTGCTAGAAAT+CGG - chr2_2:22643847-22643866 Msa0244380:intron 35.0%
!! ACATGGATTTGCTAGAAATC+GGG - chr2_2:22643848-22643867 Msa0244380:intron 35.0%
! ATTTGCTAGAAATCGGGTTT+GGG - chr2_2:22643854-22643873 Msa0244380:intron 35.0%
! TATTTGTTGGAAAAGGAGGA+GGG + chr2_2:22643893-22643912 None:intergenic 35.0%
! TTATTTGTTGGAAAAGGAGG+AGG + chr2_2:22643894-22643913 None:intergenic 35.0%
ATCTTCATGTCTTCTTCAGA+GGG + chr2_2:22643951-22643970 None:intergenic 35.0%
TGATGTTGACATCTCGAATT+CGG - chr2_2:22644171-22644190 Msa0244380:intron 35.0%
!!! CATCGCTGTTTAGTTTTAAC+TGG - chr2_2:22644302-22644321 Msa0244380:intron 35.0%
! TCTGTTTTGTAACCATGGTT+AGG - chr2_2:22644370-22644389 Msa0244380:intron 35.0%
AAGTGAGGTTTGACCAAATA+AGG + chr2_2:22644628-22644647 None:intergenic 35.0%
AAACCTCACTTAGTCTGATA+AGG - chr2_2:22644637-22644656 Msa0244380:intron 35.0%
AAACCTTATCAGACTAAGTG+AGG + chr2_2:22644643-22644662 None:intergenic 35.0%
! TGGTTGAAATCTAGTTCAAG+AGG - chr2_2:22644678-22644697 Msa0244380:intron 35.0%
GTACTGAACTATGCTATGAT+TGG - chr2_2:22644704-22644723 Msa0244380:intron 35.0%
CTATGCTATGATTGGCAATT+TGG - chr2_2:22644712-22644731 Msa0244380:intron 35.0%
!! TCATTTACTTTTCCCTCATG+TGG - chr2_2:22644764-22644783 Msa0244380:CDS 35.0%
!! CATTTACTTTTCCCTCATGT+GGG - chr2_2:22644765-22644784 Msa0244380:CDS 35.0%
GTTGTGTCAAATCTGAAAGT+TGG - chr2_2:22644807-22644826 Msa0244380:CDS 35.0%
! GTGTGGATTTTTGTACATGA+TGG - chr2_2:22644850-22644869 Msa0244380:CDS 35.0%
TTATTTCCCAACTCAGTTAG+TGG - chr2_2:22645020-22645039 Msa0244380:intron 35.0%
TTAACTCCACTAACTGAGTT+GGG + chr2_2:22645029-22645048 None:intergenic 35.0%
TTTAACTCCACTAACTGAGT+TGG + chr2_2:22645030-22645049 None:intergenic 35.0%
CAAGTTGTCAAGATAATCCA+AGG + chr2_2:22645226-22645245 None:intergenic 35.0%
CAGACTTACTTCTGATTCAA+AGG + chr2_2:22645289-22645308 None:intergenic 35.0%
CTTTGAATCAGAAGTAAGTC+TGG - chr2_2:22645287-22645306 Msa0244380:intron 35.0%
ATATAAGCAAGAAAACGCAG+AGG + chr2_2:22645643-22645662 None:intergenic 35.0%
ACTTATTCTGTAATAGGGGT+AGG - chr2_2:22645700-22645719 Msa0244380:intron 35.0%
CTAAAAACAGAGTTTCTGCA+AGG + chr2_2:22646317-22646336 None:intergenic 35.0%
!! AAAGGTATTCAAGTGAGACT+TGG + chr2_2:22646356-22646375 None:intergenic 35.0%
ATACCTTTGAATGCCTTGAT+TGG - chr2_2:22646368-22646387 Msa0244380:intron 35.0%
TACCTTTGAATGCCTTGATT+GGG - chr2_2:22646369-22646388 Msa0244380:intron 35.0%
TATCAAATTTGAGTGGCTGT+TGG - chr2_2:22646555-22646574 Msa0244380:intron 35.0%
GGATAAGAAAGCAAAGTCTA+TGG - chr2_2:22646624-22646643 Msa0244380:intron 35.0%
TAAGCATATGCTTTGTGTAG+AGG - chr2_2:22646669-22646688 Msa0244380:intron 35.0%
AGAGGCTGCTAATATTGAAA+AGG - chr2_2:22646687-22646706 Msa0244380:intron 35.0%
TTCCATCTAGTTACTGTAGT+GGG - chr2_2:22646764-22646783 Msa0244380:intron 35.0%
TTTGCAGTATTTACCTGTAC+AGG + chr2_2:22646849-22646868 None:intergenic 35.0%
!! GTAGCTTGTTGCAAAGTTAA+TGG - chr2_2:22647305-22647324 Msa0244380:intron 35.0%
ATTCATCTTTCCAACACAGA+TGG + chr2_2:22647371-22647390 None:intergenic 35.0%
ATTAGTCATCCATTATAGGG+AGG + chr2_2:22647443-22647462 None:intergenic 35.0%
CCACATTAGTCATCCATTAT+AGG + chr2_2:22647447-22647466 None:intergenic 35.0%
!! CCTATAATGGATGACTAATG+TGG - chr2_2:22647444-22647463 Msa0244380:intron 35.0%
! TTTTTCCATGGCAAGAAATG+TGG + chr2_2:22647509-22647528 None:intergenic 35.0%
TTGGGTAATTACTACATCCT+TGG - chr2_2:22647663-22647682 Msa0244380:five_prime_UTR 35.0%
ACCCGAGAAATTCATACACA+CGG - chr2_2:22641243-22641262 Msa0244380:three_prime_UTR 40.0%
CCTAACAGTTGAAGCTCTAT+AGG + chr2_2:22641374-22641393 None:intergenic 40.0%
CCTATAGAGCTTCAACTGTT+AGG - chr2_2:22641371-22641390 Msa0244380:three_prime_UTR 40.0%
ATCGAGACCATTGATACCTT+TGG + chr2_2:22641475-22641494 None:intergenic 40.0%
AGGTATCAATGGTCTCGATA+AGG - chr2_2:22641476-22641495 Msa0244380:three_prime_UTR 40.0%
TTCTAGATTCCGATCTGGTT+AGG - chr2_2:22641623-22641642 Msa0244380:three_prime_UTR 40.0%
AGTTTAGTTGCCGAGTTTGT+TGG - chr2_2:22641976-22641995 Msa0244380:intron 40.0%
GCCGTGAACTTTGATATCAT+GGG - chr2_2:22642119-22642138 Msa0244380:intron 40.0%
TACAATGCTTCATTGTCGGT+TGG + chr2_2:22642402-22642421 None:intergenic 40.0%
CTTCTAATGGAATGTGTGTC+CGG + chr2_2:22642442-22642461 None:intergenic 40.0%
TGTAGAACCGACACTTCTAA+TGG + chr2_2:22642455-22642474 None:intergenic 40.0%
TGCTTCAATGGCAGTTAATC+CGG - chr2_2:22642567-22642586 Msa0244380:intron 40.0%
ATGGCAGTTAATCCGGATTA+AGG - chr2_2:22642574-22642593 Msa0244380:intron 40.0%
TGGCAGTTAATCCGGATTAA+GGG - chr2_2:22642575-22642594 Msa0244380:intron 40.0%
CTAATCAACATGAAAGCTGG+AGG + chr2_2:22642683-22642702 None:intergenic 40.0%
! CTGTTTTCCTTAGAGATGAG+AGG - chr2_2:22642865-22642884 Msa0244380:intron 40.0%
GGTTGAAAGATTGAAACTCG+AGG - chr2_2:22643247-22643266 Msa0244380:intron 40.0%
ATCGTAAGATCCTACCAACA+GGG - chr2_2:22643282-22643301 Msa0244380:intron 40.0%
!!! TACACTTTTTCCCTGTTGGT+AGG + chr2_2:22643295-22643314 None:intergenic 40.0%
!!! CACATACACTTTTTCCCTGT+TGG + chr2_2:22643299-22643318 None:intergenic 40.0%
GAGGATGAAGACGACTATAT+TGG + chr2_2:22643483-22643502 None:intergenic 40.0%
TATAGTCGTCTTCATCCTCA+TGG - chr2_2:22643484-22643503 Msa0244380:intron 40.0%
TTATCTTGGTTTCCTCTGTG+CGG + chr2_2:22643556-22643575 None:intergenic 40.0%
AGACAGCAGTGAAATCTAGA+AGG + chr2_2:22643604-22643623 None:intergenic 40.0%
ATTTCCATCACCATGTCATC+TGG + chr2_2:22643785-22643804 None:intergenic 40.0%
GTTTGCAAACCATGGAAACT+TGG - chr2_2:22643821-22643840 Msa0244380:intron 40.0%
CATGTGATTCCAAGTTTCCA+TGG + chr2_2:22643833-22643852 None:intergenic 40.0%
CATGGAAACTTGGAATCACA+TGG - chr2_2:22643831-22643850 Msa0244380:intron 40.0%
!! GATTTGCTAGAAATCGGGTT+TGG - chr2_2:22643853-22643872 Msa0244380:intron 40.0%
GATCTTCATGTCTTCTTCAG+AGG + chr2_2:22643952-22643971 None:intergenic 40.0%
CTGAAGAAGACATGAAGATC+TGG - chr2_2:22643952-22643971 Msa0244380:intron 40.0%
! ACATGAAGATCTGGAATCAC+AGG - chr2_2:22643961-22643980 Msa0244380:intron 40.0%
!!! TAGTTTTGAGTACCGTCTGA+GGG - chr2_2:22644124-22644143 Msa0244380:intron 40.0%
TGTCAACATCAAATCTCCTC+CGG + chr2_2:22644162-22644181 None:intergenic 40.0%
ATTCGGAACACAAACAGTGA+TGG - chr2_2:22644188-22644207 Msa0244380:intron 40.0%
TTCGGAACACAAACAGTGAT+GGG - chr2_2:22644189-22644208 Msa0244380:intron 40.0%
!! TATTGCCGGGGCTTTTAATT+TGG - chr2_2:22644511-22644530 Msa0244380:intron 40.0%
!! TATAGCTCAAGGGCTTTAAG+TGG - chr2_2:22644601-22644620 Msa0244380:intron 40.0%
!! GGCTTTAAGTGGTCCTTATT+TGG - chr2_2:22644612-22644631 Msa0244380:intron 40.0%
GTTAGTGGAGTTAAAGACTG+TGG - chr2_2:22645035-22645054 Msa0244380:CDS 40.0%
TGCATGTGTTCAGTGAAGTT+CGG - chr2_2:22645184-22645203 Msa0244380:intron 40.0%
TCTTGACAACTTGCAGAACA+AGG - chr2_2:22645233-22645252 Msa0244380:intron 40.0%
!! AGTTTCAGGTTAAGAGATGC+TGG - chr2_2:22645326-22645345 Msa0244380:intron 40.0%
! TTCATACCAAAAGTGTGCAC+TGG - chr2_2:22645537-22645556 Msa0244380:intron 40.0%
GTGTGTAGCTAATGTTTCAC+AGG - chr2_2:22645902-22645921 Msa0244380:intron 40.0%
ACCTTTGAATGCCTTGATTG+GGG - chr2_2:22646370-22646389 Msa0244380:intron 40.0%
GACTTTGCTTTCTTATCCCA+AGG + chr2_2:22646622-22646641 None:intergenic 40.0%
! GCAAAGTCTATGGCTGATTT+CGG - chr2_2:22646634-22646653 Msa0244380:intron 40.0%
! CAAAGTCTATGGCTGATTTC+GGG - chr2_2:22646635-22646654 Msa0244380:intron 40.0%
! AAAGTCTATGGCTGATTTCG+GGG - chr2_2:22646636-22646655 Msa0244380:intron 40.0%
!! AAGGCTATCACTTTGAAACC+TGG - chr2_2:22646706-22646725 Msa0244380:intron 40.0%
!! CTTTGAAACCTGGAGAAGAA+TGG - chr2_2:22646716-22646735 Msa0244380:intron 40.0%
AAACCTGGAGAAGAATGGAA+AGG - chr2_2:22646721-22646740 Msa0244380:intron 40.0%
GTTCCATCTAGTTACTGTAG+TGG - chr2_2:22646763-22646782 Msa0244380:intron 40.0%
GATTCAAAAGGAATCCCTCT+GGG + chr2_2:22647586-22647605 None:intergenic 40.0%
TGATTCAAAAGGAATCCCTC+TGG + chr2_2:22647587-22647606 None:intergenic 40.0%
CTCTGTGTGTGTGTGAAATG+GGG + chr2_2:22641213-22641232 None:intergenic 45.0%
CCTCTGTGTGTGTGTGAAAT+GGG + chr2_2:22641214-22641233 None:intergenic 45.0%
TCCTCTGTGTGTGTGTGAAA+TGG + chr2_2:22641215-22641234 None:intergenic 45.0%
GCCGTGTGTATGAATTTCTC+GGG + chr2_2:22641247-22641266 None:intergenic 45.0%
CGCCGTGTGTATGAATTTCT+CGG + chr2_2:22641248-22641267 None:intergenic 45.0%
CGAGAAATTCATACACACGG+CGG - chr2_2:22641246-22641265 Msa0244380:three_prime_UTR 45.0%
GTTCTTCTTCGTGAATCTCG+TGG - chr2_2:22641498-22641517 Msa0244380:three_prime_UTR 45.0%
CGGTTACGATTATACCTCAG+CGG + chr2_2:22641529-22641548 None:intergenic 45.0%
GTGGAAGAATGATCATGCTG+AGG - chr2_2:22641864-22641883 Msa0244380:intron 45.0%
GGCCGTGAACTTTGATATCA+TGG - chr2_2:22642118-22642137 Msa0244380:intron 45.0%
!! TATGTATCGGTGTCAAACGC+CGG - chr2_2:22642420-22642439 Msa0244380:intron 45.0%
GCTTAAAGATAGCCTGCACA+AGG + chr2_2:22642749-22642768 None:intergenic 45.0%
GGCTATCTTTAAGCCTCCTA+AGG - chr2_2:22642755-22642774 Msa0244380:intron 45.0%
CCTTTCACCTCTCATCTCTA+AGG + chr2_2:22642875-22642894 None:intergenic 45.0%
CCTTAGAGATGAGAGGTGAA+AGG - chr2_2:22642872-22642891 Msa0244380:intron 45.0%
AAGTCGTATTGAAGAAGGGG+TGG - chr2_2:22642990-22643009 Msa0244380:intron 45.0%
AGTCGTATTGAAGAAGGGGT+GGG - chr2_2:22642991-22643010 Msa0244380:intron 45.0%
AGTGAGCTGCTCTCTTTGTA+GGG + chr2_2:22643081-22643100 None:intergenic 45.0%
!!! TCACTGCCGTTTTGAGAACT+GGG - chr2_2:22643096-22643115 Msa0244380:intron 45.0%
AGGGTCTATGTAAGATTGGG+AGG - chr2_2:22643223-22643242 Msa0244380:intron 45.0%
GGGTCTATGTAAGATTGGGA+GGG - chr2_2:22643224-22643243 Msa0244380:intron 45.0%
GGTCTATGTAAGATTGGGAG+GGG - chr2_2:22643225-22643244 Msa0244380:intron 45.0%
GTCTATGTAAGATTGGGAGG+GGG - chr2_2:22643226-22643245 Msa0244380:intron 45.0%
GAAACTCGAGGATTGTAGCA+CGG - chr2_2:22643259-22643278 Msa0244380:intron 45.0%
GATCGTAAGATCCTACCAAC+AGG - chr2_2:22643281-22643300 Msa0244380:intron 45.0%
TCCTCATGGAAGTGAAACAG+AGG - chr2_2:22643498-22643517 Msa0244380:intron 45.0%
TCCTCTGTTTCACTTCCATG+AGG + chr2_2:22643502-22643521 None:intergenic 45.0%
TCATCACACTCCAGATGACA+TGG - chr2_2:22643772-22643791 Msa0244380:CDS 45.0%
!!! GTAGTTTTGAGTACCGTCTG+AGG - chr2_2:22644123-22644142 Msa0244380:intron 45.0%
GTCAACATCAAATCTCCTCC+GGG + chr2_2:22644161-22644180 None:intergenic 45.0%
TGGTGAAAGTAGCCTAACCA+TGG + chr2_2:22644385-22644404 None:intergenic 45.0%
! GGACCTCAAAGCATTATTGC+CGG - chr2_2:22644497-22644516 Msa0244380:intron 45.0%
! GACCTCAAAGCATTATTGCC+GGG - chr2_2:22644498-22644517 Msa0244380:intron 45.0%
! ACCTCAAAGCATTATTGCCG+GGG - chr2_2:22644499-22644518 Msa0244380:intron 45.0%
TGCCACCAAATTAAAAGCCC+CGG + chr2_2:22644519-22644538 None:intergenic 45.0%
!!! GGGCTTTTAATTTGGTGGCA+CGG - chr2_2:22644519-22644538 Msa0244380:intron 45.0%
!!! GGCTTTTAATTTGGTGGCAC+GGG - chr2_2:22644520-22644539 Msa0244380:intron 45.0%
AAGTACAACTGCCCACATGA+GGG + chr2_2:22644779-22644798 None:intergenic 45.0%
GCATGTGTTCAGTGAAGTTC+GGG - chr2_2:22645185-22645204 Msa0244380:intron 45.0%
TTCAGTGAAGTTCGGGTAGA+AGG - chr2_2:22645192-22645211 Msa0244380:intron 45.0%
GGTAGAAGGATTAGAGACCT+TGG - chr2_2:22645206-22645225 Msa0244380:intron 45.0%
!! AAGGAGCGCTTTACTGAACA+GGG - chr2_2:22645252-22645271 Msa0244380:intron 45.0%
! TAGCAACCAGTGCACACTTT+TGG + chr2_2:22645546-22645565 None:intergenic 45.0%
AAAGATAAAGCCGACAGTGG+GGG + chr2_2:22645620-22645639 None:intergenic 45.0%
GAAAGATAAAGCCGACAGTG+GGG + chr2_2:22645621-22645640 None:intergenic 45.0%
GGAAAGATAAAGCCGACAGT+GGG + chr2_2:22645622-22645641 None:intergenic 45.0%
AGGAAAGATAAAGCCGACAG+TGG + chr2_2:22645623-22645642 None:intergenic 45.0%
GGTATCAACCAGCGCATATT+GGG + chr2_2:22645731-22645750 None:intergenic 45.0%
TGGTATCAACCAGCGCATAT+TGG + chr2_2:22645732-22645751 None:intergenic 45.0%
ATGCCACCCACTTCATATCT+GGG - chr2_2:22645751-22645770 Msa0244380:intron 45.0%
CCAATGCCCAGATATGAAGT+GGG + chr2_2:22645760-22645779 None:intergenic 45.0%
ACCAATGCCCAGATATGAAG+TGG + chr2_2:22645761-22645780 None:intergenic 45.0%
!! AGATAGTACTGACCAGCATC+AGG + chr2_2:22646095-22646114 None:intergenic 45.0%
! TCCCCAATCAAGGCATTCAA+AGG + chr2_2:22646374-22646393 None:intergenic 45.0%
TACTAGTGGTGTGGAATCCT+TGG - chr2_2:22646602-22646621 Msa0244380:intron 45.0%
ACTAGTGGTGTGGAATCCTT+GGG - chr2_2:22646603-22646622 Msa0244380:intron 45.0%
CTTCCTTTCCATTCTTCTCC+AGG + chr2_2:22646727-22646746 None:intergenic 45.0%
TGCCCACTACAGTAACTAGA+TGG + chr2_2:22646769-22646788 None:intergenic 45.0%
CATGCAGGGGCAAAATTACA+GGG + chr2_2:22647346-22647365 None:intergenic 45.0%
ACATGCAGGGGCAAAATTAC+AGG + chr2_2:22647347-22647366 None:intergenic 45.0%
AACACAGATGGAACATGCAG+GGG + chr2_2:22647359-22647378 None:intergenic 45.0%
CAACACAGATGGAACATGCA+GGG + chr2_2:22647360-22647379 None:intergenic 45.0%
AGAGTCCACATTTCTTGCCA+TGG - chr2_2:22647501-22647520 Msa0244380:CDS 45.0%
GGTAAAGAAGTGGGGAAAAC+AGG + chr2_2:22647780-22647799 None:intergenic 45.0%
!! AGTAAAAAAAAATAATAAAA+AGG + chr2_2:22646586-22646605 None:intergenic 5.0%
!! TTAATAATAAACAAATTATA+GGG + chr2_2:22647637-22647656 None:intergenic 5.0%
!! TTTAATAATAAACAAATTAT+AGG + chr2_2:22647638-22647657 None:intergenic 5.0%
CCCATTTCACACACACACAG+AGG - chr2_2:22641211-22641230 Msa0244380:three_prime_UTR 50.0%
AAGCCTCCTAAGGCTATTCG+TGG - chr2_2:22642765-22642784 Msa0244380:intron 50.0%
CTCCTAAGGCTATTCGTGGA+GGG - chr2_2:22642769-22642788 Msa0244380:intron 50.0%
ATCCCTCCACGAATAGCCTT+AGG + chr2_2:22642774-22642793 None:intergenic 50.0%
GTCGTATTGAAGAAGGGGTG+GGG - chr2_2:22642992-22643011 Msa0244380:intron 50.0%
TCGTATTGAAGAAGGGGTGG+GGG - chr2_2:22642993-22643012 Msa0244380:intron 50.0%
CAGTGAGCTGCTCTCTTTGT+AGG + chr2_2:22643082-22643101 None:intergenic 50.0%
!!! CTCACTGCCGTTTTGAGAAC+TGG - chr2_2:22643095-22643114 Msa0244380:intron 50.0%
CACTCCAGATGACATGGTGA+TGG - chr2_2:22643778-22643797 Msa0244380:CDS 50.0%
AGGAGGAGGGTCATCTTCAA+TGG + chr2_2:22643880-22643899 None:intergenic 50.0%
TACCGTCTGAGGGTAGCTTT+GGG - chr2_2:22644134-22644153 Msa0244380:intron 50.0%
!!! TGCCGGGGCTTTTAATTTGG+TGG - chr2_2:22644514-22644533 Msa0244380:intron 50.0%
CAAGTACAACTGCCCACATG+AGG + chr2_2:22644780-22644799 None:intergenic 50.0%
! GTACATGATGGTGCAGAGTG+TGG - chr2_2:22644862-22644881 Msa0244380:intron 50.0%
!! CAAGGAGCGCTTTACTGAAC+AGG - chr2_2:22645251-22645270 Msa0244380:intron 50.0%
ATCCTATACTCCCCCACTGT+CGG - chr2_2:22645607-22645626 Msa0244380:intron 50.0%
CAGATATGAAGTGGGTGGCA+TGG + chr2_2:22645752-22645771 None:intergenic 50.0%
CATGCCACCCACTTCATATC+TGG - chr2_2:22645750-22645769 Msa0244380:intron 50.0%
ATGCCCAGATATGAAGTGGG+TGG + chr2_2:22645757-22645776 None:intergenic 50.0%
CCCACTTCATATCTGGGCAT+TGG - chr2_2:22645757-22645776 Msa0244380:intron 50.0%
AAAGATGGCCTTCCTGATGC+TGG - chr2_2:22646080-22646099 Msa0244380:intron 50.0%
!! AGTACTGACCAGCATCAGGA+AGG + chr2_2:22646091-22646110 None:intergenic 50.0%
CACTCGAACATCCCCAATCA+AGG + chr2_2:22646384-22646403 None:intergenic 50.0%
TGATCCCCAGAGAGTTCTTC+AGG - chr2_2:22646792-22646811 Msa0244380:intron 50.0%
GATCCCCAGAGAGTTCTTCA+GGG - chr2_2:22646793-22646812 Msa0244380:intron 50.0%
CTGTGTTCTGTGTCCTGTAC+AGG - chr2_2:22646833-22646852 Msa0244380:intron 50.0%
! CTGATTGGTCAGCGTGATCA+AGG - chr2_2:22647186-22647205 Msa0244380:intron 50.0%
CCAACACAGATGGAACATGC+AGG + chr2_2:22647361-22647380 None:intergenic 50.0%
CCTGCATGTTCCATCTGTGT+TGG - chr2_2:22647358-22647377 Msa0244380:intron 50.0%
AAAGGAATCCCTCTGGGTCT+GGG + chr2_2:22647580-22647599 None:intergenic 50.0%
AAAAGGAATCCCTCTGGGTC+TGG + chr2_2:22647581-22647600 None:intergenic 50.0%
TGCATGACAGAATCGTCGAC+AGG - chr2_2:22647716-22647735 Msa0244380:five_prime_UTR 50.0%
ACGGTGGACATGTGACTTCG+TGG - chr2_2:22641845-22641864 Msa0244380:intron 55.0%
! CCTCCACGAATAGCCTTAGG+AGG + chr2_2:22642771-22642790 None:intergenic 55.0%
CCTCCTAAGGCTATTCGTGG+AGG - chr2_2:22642768-22642787 Msa0244380:intron 55.0%
TATTGAAGAAGGGGTGGGGG+TGG - chr2_2:22642996-22643015 Msa0244380:intron 55.0%
ATTGAAGAAGGGGTGGGGGT+GGG - chr2_2:22642997-22643016 Msa0244380:intron 55.0%
GTACCGTCTGAGGGTAGCTT+TGG - chr2_2:22644133-22644152 Msa0244380:intron 55.0%
GTCCCAAAGCTACCCTCAGA+CGG + chr2_2:22644139-22644158 None:intergenic 55.0%
GCCCCGGCAATAATGCTTTG+AGG + chr2_2:22644503-22644522 None:intergenic 55.0%
! GACAGTGGGGGAGTATAGGA+TGG + chr2_2:22645608-22645627 None:intergenic 55.0%
CAACCAGCGCATATTGGGCA+AGG + chr2_2:22645726-22645745 None:intergenic 55.0%
TGGGGATGTTCGAGTGAGCT+TGG - chr2_2:22646388-22646407 Msa0244380:intron 55.0%
GGGGATGTTCGAGTGAGCTT+GGG - chr2_2:22646389-22646408 Msa0244380:intron 55.0%
CTGCCCTGAAGAACTCTCTG+GGG + chr2_2:22646799-22646818 None:intergenic 55.0%
GCTGCCCTGAAGAACTCTCT+GGG + chr2_2:22646800-22646819 None:intergenic 55.0%
AGCTGCCCTGAAGAACTCTC+TGG + chr2_2:22646801-22646820 None:intergenic 55.0%
TTGAATGGCCCAGACCCAGA+GGG - chr2_2:22647569-22647588 Msa0244380:exon 55.0%
TTGGTTTCCTCTGTGCGGCG+CGG + chr2_2:22643551-22643570 None:intergenic 60.0%
!! CTGAGGGTAGCTTTGGGACC+CGG - chr2_2:22644140-22644159 Msa0244380:intron 60.0%
! AGCCGACAGTGGGGGAGTAT+AGG + chr2_2:22645612-22645631 None:intergenic 60.0%
AGGCCTTGCCCAATATGCGC+TGG - chr2_2:22645720-22645739 Msa0244380:intron 60.0%
GTTGAATGGCCCAGACCCAG+AGG - chr2_2:22647568-22647587 Msa0244380:exon 60.0%
ATCTCGTGGCGCTTCCGCTG+AGG - chr2_2:22641512-22641531 Msa0244380:three_prime_UTR 65.0%
! AAGGGGTGGGGGTGGGTTCA+GGG - chr2_2:22643004-22643023 Msa0244380:intron 65.0%
!! AGGGTAGCTTTGGGACCCGG+AGG - chr2_2:22644143-22644162 Msa0244380:intron 65.0%
! GAAGGGGTGGGGGTGGGTTC+AGG - chr2_2:22643003-22643022 Msa0244380:intron 70.0%
GTTTCCTCTGTGCGGCGCGG+TGG + chr2_2:22643548-22643567 None:intergenic 70.0%
GGAACCACCGCGCCGCACAG+AGG - chr2_2:22643541-22643560 Msa0244380:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 22641184 22647822 22641184 ID=Msa0244380;Name=Msa0244380
chr2_2 mRNA 22641184 22647822 22641184 ID=Msa0244380-mRNA-1;Parent=Msa0244380;Name=Msa0244380-mRNA-1;_AED=0.14;_eAED=0.14;_QI=239|1|1|1|0.87|0.77|9|550|320
chr2_2 exon 22641184 22641701 22641184 ID=Msa0244380-mRNA-1:exon:8716;Parent=Msa0244380-mRNA-1
chr2_2 exon 22642152 22642398 22642152 ID=Msa0244380-mRNA-1:exon:8715;Parent=Msa0244380-mRNA-1
chr2_2 exon 22642905 22643004 22642905 ID=Msa0244380-mRNA-1:exon:8714;Parent=Msa0244380-mRNA-1
chr2_2 exon 22643707 22643809 22643707 ID=Msa0244380-mRNA-1:exon:8713;Parent=Msa0244380-mRNA-1
chr2_2 exon 22644739 22644879 22644739 ID=Msa0244380-mRNA-1:exon:8712;Parent=Msa0244380-mRNA-1
chr2_2 exon 22645024 22645184 22645024 ID=Msa0244380-mRNA-1:exon:8711;Parent=Msa0244380-mRNA-1
chr2_2 exon 22646194 22646250 22646194 ID=Msa0244380-mRNA-1:exon:8710;Parent=Msa0244380-mRNA-1
chr2_2 exon 22647097 22647171 22647097 ID=Msa0244380-mRNA-1:exon:8709;Parent=Msa0244380-mRNA-1
chr2_2 exon 22647473 22647822 22647473 ID=Msa0244380-mRNA-1:exon:8708;Parent=Msa0244380-mRNA-1
chr2_2 five_prime_UTR 22647584 22647822 22647584 ID=Msa0244380-mRNA-1:five_prime_utr;Parent=Msa0244380-mRNA-1
chr2_2 CDS 22647473 22647583 22647473 ID=Msa0244380-mRNA-1:cds;Parent=Msa0244380-mRNA-1
chr2_2 CDS 22647097 22647171 22647097 ID=Msa0244380-mRNA-1:cds;Parent=Msa0244380-mRNA-1
chr2_2 CDS 22646194 22646250 22646194 ID=Msa0244380-mRNA-1:cds;Parent=Msa0244380-mRNA-1
chr2_2 CDS 22645024 22645184 22645024 ID=Msa0244380-mRNA-1:cds;Parent=Msa0244380-mRNA-1
chr2_2 CDS 22644739 22644879 22644739 ID=Msa0244380-mRNA-1:cds;Parent=Msa0244380-mRNA-1
chr2_2 CDS 22643707 22643809 22643707 ID=Msa0244380-mRNA-1:cds;Parent=Msa0244380-mRNA-1
chr2_2 CDS 22642905 22643004 22642905 ID=Msa0244380-mRNA-1:cds;Parent=Msa0244380-mRNA-1
chr2_2 CDS 22642184 22642398 22642184 ID=Msa0244380-mRNA-1:cds;Parent=Msa0244380-mRNA-1
chr2_2 three_prime_UTR 22642152 22642183 22642152 ID=Msa0244380-mRNA-1:three_prime_utr;Parent=Msa0244380-mRNA-1
chr2_2 three_prime_UTR 22641184 22641701 22641184 ID=Msa0244380-mRNA-1:three_prime_utr;Parent=Msa0244380-mRNA-1
Gene Sequence

>Msa0244380

ATGAATAACGAAAAGCTTTCTTCTTCTTCTTCTTCTTCCTTTACGTTAACCAAAGGTATCAATGGTCTCGATAAGGTTCTTCTTCGTGAATCTCGTGGCGCTTCCGCTGAGATTTATCTGTACGGTGGACATGTGACTTCGTGGAAGAATGATCATGCTGAGGAATTGCTTTTTCTCAGTAGTAAGGCTATCTTTAAGCCTCCTAAGGCTATTCGTGGAGGGATTCCAATATGCTTTCCACAATTTGCAAACCATGGAAACTTGGAATCACATGGATTTGCTAGAAATCGGGTTTGGGCCATTGAAGATGACCCTCCTCCTTTTCCAACAAATAATTTGAGCAAAGCCTTTGTTGATTTGATTCTTAAACCCTCTGAAGAAGACATGAAGATCTGGAATCACAGTTTTGAGTACCGTCTGAGGGTAGCTTTGGGACCCGGAGGAGATTTGATGTTGACATCTCGAATTCGGAACACAAACAGTGATGGGAAGCCATTTTCGTTCACATTTGCTTATCATACTTATTTTTCGGTATCAGACATAAGTGAAGTTCGGGTAGAAGGATTAGAGACCTTGGATTATCTTGACAACTTGCAGAACAAGGAGCGCTTTACTGAACAGGGAGATGCTTTGACCTTTGAATCAGAAGTTGATAAGATATATCTTAGTACTCCTACAAAGATTGCAATCATTGATCATGAAAAAAAGAGGACATTTGTTTTGCGTAAAGATGGCCTTCCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAAGCAAAGTCTATGGCTGATTTCGGGGATGATGAGTATAAGCATATGCTTTGTGTAGAGGCTGCTAATATTGAAAAGGCTATCACTTTGAAACCTGGAGAAGAATGGAAAGGAAGACTAGAGCTTTCAGCTGTTCCATCTAGTTACTGTAGTGGGCAGCTTGATCCCCAGAGAGTTCTTCAGGGCAGCTGA

Protein sequence

>Msa0244380

MNNEKLSSSSSSSFTLTKGINGLDKVLLRESRGASAEIYLYGGHVTSWKNDHAEELLFLSSKAIFKPPKAIRGGIPICFPQFANHGNLESHGFARNRVWAIEDDPPPFPTNNLSKAFVDLILKPSEEDMKIWNHSFEYRLRVALGPGGDLMLTSRIRNTNSDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDALTFESEVDKIYLSTPTKIAIIDHEKKRTFVLRKDGLPDAVVWNPWDKKAKSMADFGDDEYKHMLCVEAANIEKAITLKPGEEWKGRLELSAVPSSYCSGQLDPQRVLQGS*