AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837410 MtrunA17_Chr5g0403851 99.415 171 1 0 1 171 1 171 1.32e-126 352
Msa0837410 MtrunA17_Chr3g0141491 67.416 89 26 2 48 133 6 94 1.73e-34 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837410 AT4G36660.1 70.588 170 40 2 1 160 1 170 1.12e-78 232
Msa0837410 AT5G65650.1 69.186 172 46 2 1 165 1 172 2.76e-76 226
Msa0837410 AT1G19380.1 54.622 119 53 1 30 147 25 143 6.15e-37 125

Find 71 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAGGAAGGTACAAATTT+TGG 0.094967 5_4:+11389543 Msa0837410:CDS
ATACATAATCATCTTGCTTA+TGG 0.256319 5_4:-11393246 None:intergenic
TTCCTTTGTCAGCTTGCTTA+AGG 0.283386 5_4:-11393095 None:intergenic
AACATGGATTCAGGTTTGTT+TGG 0.284349 5_4:+11389521 Msa0837410:CDS
GGATCAGGTTGCCGAGGTTT+TGG 0.290545 5_4:+11389869 Msa0837410:CDS
ACTTGTGCATTTAGCATAGT+TGG 0.331228 5_4:-11393383 None:intergenic
ACATGGATTCAGGTTTGTTT+GGG 0.340632 5_4:+11389522 Msa0837410:CDS
ACCGTTTCTCTTCGTTGGTC+TGG 0.356252 5_4:+11389614 Msa0837410:CDS
GACGGCGGCGATTAACAAAA+AGG 0.382742 5_4:+11389496 Msa0837410:CDS
AACTGACTATATGTTCTTGT+AGG 0.392162 5_4:+11393355 Msa0837410:three_prime_UTR
CTGGTACCGTTTCTCTTCGT+TGG 0.412184 5_4:+11389609 Msa0837410:CDS
AATGGAGGAGAGGGAGAAAG+TGG 0.421490 5_4:+11389810 Msa0837410:CDS
CGATCTGATTGTGTAAATGA+AGG 0.432492 5_4:-11389285 None:intergenic
TCAAGGGTCTGGCTTGTGCT+TGG 0.446945 5_4:+11393159 Msa0837410:three_prime_UTR
ACATCGAGATCGTCGTGAAT+CGG 0.453320 5_4:-11389671 None:intergenic
AGAAAGTGGTGAGGCATATG+TGG 0.462069 5_4:+11389824 Msa0837410:CDS
AGTATCGAGGTCACTGGATA+AGG 0.465982 5_4:-11389648 None:intergenic
CTCTATTATTATTATTGTTG+TGG 0.469091 5_4:-11389343 None:intergenic
ATTATTGTAGATTATTAGAT+CGG 0.476671 5_4:+11389442 Msa0837410:five_prime_UTR
AAGGAAAACTAACCGTGGAT+TGG 0.488593 5_4:-11390014 None:intergenic
TGTTGTGGTAGATGAACAAC+GGG 0.490230 5_4:-11389328 None:intergenic
CAGGTTTGTTTGGGAAAGGA+AGG 0.501755 5_4:+11389531 Msa0837410:CDS
ACACCAACAGCCGTAGGATC+AGG 0.511562 5_4:+11389854 Msa0837410:CDS
ATAAATCAATAACGCGGTGC+CGG 0.513005 5_4:+11389242 Msa0837410:five_prime_UTR
TTAATCGCCGCCGTCGTCGT+TGG 0.517902 5_4:-11389488 None:intergenic
TCTAGGAGCAGTCAAGGGTC+TGG 0.518590 5_4:+11393148 Msa0837410:three_prime_UTR
GACCACTCTAGGAGCAGTCA+AGG 0.524656 5_4:+11393142 Msa0837410:three_prime_UTR
GATTATTAGATCGGAAATGA+AGG 0.534187 5_4:+11389451 Msa0837410:exon
GATTCAGGTTTGTTTGGGAA+AGG 0.536575 5_4:+11389527 Msa0837410:CDS
CAACCTGATCCTACGGCTGT+TGG 0.537984 5_4:-11389857 None:intergenic
GCGTGCTTAAAGACCACTCT+AGG 0.544127 5_4:+11393131 Msa0837410:exon
CTTCATTTACACAATCAGAT+CGG 0.547440 5_4:+11389286 Msa0837410:five_prime_UTR
CGGAAATGAAGGATGACGAT+GGG 0.550371 5_4:+11389462 Msa0837410:exon
ACCAGACCAACGAAGAGAAA+CGG 0.550644 5_4:-11389615 None:intergenic
GAAAGTGGTGAGGCATATGT+GGG 0.551973 5_4:+11389825 Msa0837410:CDS
ACCCTTGACTGCTCCTAGAG+TGG 0.554244 5_4:-11393144 None:intergenic
ACCGTGGATTGGATAGGAGG+TGG 0.560306 5_4:-11390003 None:intergenic
CTAACCGTGGATTGGATAGG+AGG 0.562418 5_4:-11390006 None:intergenic
AAACTAACCGTGGATTGGAT+AGG 0.566662 5_4:-11390009 None:intergenic
AATCAATAACGCGGTGCCGG+TGG 0.566971 5_4:+11389245 Msa0837410:five_prime_UTR
TGTGTAGGAAATGGAGGAGA+GGG 0.567688 5_4:+11389801 Msa0837410:intron
AATCGGAGTATCGAGGTCAC+TGG 0.567901 5_4:-11389654 None:intergenic
TTTGTGTGTGTAGGAAATGG+AGG 0.573209 5_4:+11389795 Msa0837410:intron
ACCTCGGCAACCTGATCCTA+CGG 0.573548 5_4:-11389864 None:intergenic
AGCCTTAAGCAAGCTGACAA+AGG 0.595487 5_4:+11393093 Msa0837410:CDS
GAATTGACAAGTGATGTTCC+TGG 0.596743 5_4:+11389919 Msa0837410:CDS
CATCATATTTCAGAGAGCAC+AGG 0.597960 5_4:+11393059 Msa0837410:intron
GCTGTGATGCAAAATGAAGA+TGG 0.601135 5_4:-11389199 None:intergenic
AGGAGAGGGAGAAAGTGGTG+AGG 0.601765 5_4:+11389815 Msa0837410:CDS
TGGGCTTCCAACGACGACGG+CGG 0.609391 5_4:+11389481 Msa0837410:CDS
TTGTTGTGGTAGATGAACAA+CGG 0.611604 5_4:-11389329 None:intergenic
AGAAACGGTACCAGTAAACA+TGG 0.615388 5_4:-11389600 None:intergenic
GCCGTAGGATCAGGTTGCCG+AGG 0.615991 5_4:+11389863 Msa0837410:CDS
ATGTGAATGTGAGACACCAC+CGG 0.617048 5_4:-11389261 None:intergenic
AAAGCCTCTTGCCAAAACCT+CGG 0.619602 5_4:-11389880 None:intergenic
AAATGAAGATGGTGAAATGA+CGG 0.622155 5_4:-11389188 None:intergenic
GTATAAATTGAATTTATGTG+TGG 0.628850 5_4:+11393457 Msa0837410:three_prime_UTR
CGATGGGCTTCCAACGACGA+CGG 0.632047 5_4:+11389478 Msa0837410:CDS
TCCACCTCCTATCCAATCCA+CGG 0.641814 5_4:+11390002 Msa0837410:CDS
TCGGAAATGAAGGATGACGA+TGG 0.646801 5_4:+11389461 Msa0837410:exon
ACCACTCTAGGAGCAGTCAA+GGG 0.647727 5_4:+11393143 Msa0837410:three_prime_UTR
AAAAGATTGCGAAGAAACAG+TGG 0.656108 5_4:+11393192 Msa0837410:three_prime_UTR
GTGTGTAGGAAATGGAGGAG+AGG 0.656261 5_4:+11389800 Msa0837410:intron
GATTGCGAAGAAACAGTGGT+GGG 0.658478 5_4:+11393196 Msa0837410:three_prime_UTR
AGATTGCGAAGAAACAGTGG+TGG 0.662809 5_4:+11393195 Msa0837410:three_prime_UTR
AATTTGTACGACAACAAACG+TGG 0.674259 5_4:-11393331 None:intergenic
CGTCGTGAATCGGAGTATCG+AGG 0.677291 5_4:-11389661 None:intergenic
ATAGCATCATCTCTAACACC+AGG 0.678366 5_4:-11389937 None:intergenic
ATGTGTACACCAACAGCCGT+AGG 0.683663 5_4:+11389848 Msa0837410:CDS
CTGATAATAAATCAATAACG+CGG 0.702407 5_4:+11389236 Msa0837410:five_prime_UTR
ACAAAGGAAAAGAAGCGATG+CGG 0.741207 5_4:+11393109 Msa0837410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTATTTTTAATAAA+GGG - chr5_4:11392225-11392244 None:intergenic 0.0%
!!! TTTATTTTTATTTTTAATAA+AGG - chr5_4:11392226-11392245 None:intergenic 0.0%
!!! ATTATATTTTAATTATTATT+TGG + chr5_4:11393413-11393432 Msa0837410:three_prime_UTR 0.0%
!! TAAATATTTAAGTAATATCT+TGG - chr5_4:11389760-11389779 None:intergenic 10.0%
!! ATAAATCTTTATATGTTTAT+AGG - chr5_4:11390663-11390682 None:intergenic 10.0%
!! ATTATTGTAGATTATTAGAT+CGG + chr5_4:11389442-11389461 Msa0837410:five_prime_UTR 15.0%
!! TTAAATATGAATGAGATTAA+AGG - chr5_4:11389715-11389734 None:intergenic 15.0%
!!! TTTACAATTTGTATGTTTTT+TGG + chr5_4:11391017-11391036 Msa0837410:intron 15.0%
!!! AGATGATTATGTATTTTAAT+AGG + chr5_4:11393255-11393274 Msa0837410:three_prime_UTR 15.0%
!!! TTGGTAAACAAATATTTTAT+TGG + chr5_4:11393432-11393451 Msa0837410:three_prime_UTR 15.0%
!!! TGGTAAACAAATATTTTATT+GGG + chr5_4:11393433-11393452 Msa0837410:three_prime_UTR 15.0%
!! CTCTATTATTATTATTGTTG+TGG - chr5_4:11389346-11389365 None:intergenic 20.0%
!!! ACTCATTGTTAATTTGTTAT+TGG + chr5_4:11390107-11390126 Msa0837410:intron 20.0%
!! ATAATATTGCACAAGAAATT+TGG + chr5_4:11390161-11390180 Msa0837410:intron 20.0%
!! GAACAAAAGATAAATTAAAG+TGG - chr5_4:11390394-11390413 None:intergenic 20.0%
!!! TTTTTAAATGTTGTTTCGTT+TGG + chr5_4:11390623-11390642 Msa0837410:intron 20.0%
!! TATATGTTTATAGGTGTTTA+TGG - chr5_4:11390654-11390673 None:intergenic 20.0%
!! TGTAAGTAAATAGACAAAAA+AGG - chr5_4:11391299-11391318 None:intergenic 20.0%
!! GATATTGTTAGTTAGATAAA+AGG + chr5_4:11391508-11391527 Msa0837410:intron 20.0%
!!! TTCATATTTGATAGTTTAAC+TGG + chr5_4:11391547-11391566 Msa0837410:intron 20.0%
!!! TGTTTATGTCAATGATTTTA+AGG + chr5_4:11392156-11392175 Msa0837410:intron 20.0%
!!! GTTTATGTCAATGATTTTAA+GGG + chr5_4:11392157-11392176 Msa0837410:intron 20.0%
!!! TGTTTAGTTTTGTTTTCTAA+GGG - chr5_4:11392466-11392485 None:intergenic 20.0%
!!! ATGTTTAGTTTTGTTTTCTA+AGG - chr5_4:11392467-11392486 None:intergenic 20.0%
!! TAAAATGAATGTTTGAATAG+AGG - chr5_4:11392526-11392545 None:intergenic 20.0%
!!! ATCATTTTGGAAACATTTTA+AGG + chr5_4:11392605-11392624 Msa0837410:intron 20.0%
!!! TCATTTTGGAAACATTTTAA+GGG + chr5_4:11392606-11392625 Msa0837410:intron 20.0%
!! TAATCTAAATTAACTGAGAA+TGG - chr5_4:11392751-11392770 None:intergenic 20.0%
!! TCATACTAGAGTATATATTA+TGG + chr5_4:11393020-11393039 Msa0837410:intron 20.0%
!!! TTATGTATTTTAATAGGTTG+TGG + chr5_4:11393261-11393280 Msa0837410:three_prime_UTR 20.0%
!! GTATAAATTGAATTTATGTG+TGG + chr5_4:11393457-11393476 Msa0837410:three_prime_UTR 20.0%
! CTGATAATAAATCAATAACG+CGG + chr5_4:11389236-11389255 Msa0837410:five_prime_UTR 25.0%
! GATTAACAAAAAGGAAAACA+TGG + chr5_4:11389505-11389524 Msa0837410:CDS 25.0%
! TGAATGAGATTAAAGGAAAA+TGG - chr5_4:11389708-11389727 None:intergenic 25.0%
!! TTCATCATTTCAAGTAAGTA+TGG - chr5_4:11390080-11390099 None:intergenic 25.0%
!!! TTGTTAATTTGTTATTGGTC+TGG + chr5_4:11390112-11390131 Msa0837410:intron 25.0%
!!! TTTTTTGTCAAGTCTTTTTG+TGG - chr5_4:11390510-11390529 None:intergenic 25.0%
! CAGACTAATTTCAACTAATA+CGG - chr5_4:11390594-11390613 None:intergenic 25.0%
!!! GATTGGTTTTATTTTGAATG+TGG + chr5_4:11390765-11390784 Msa0837410:intron 25.0%
! TATGTTTGCAATTTGCAAAT+GGG + chr5_4:11390810-11390829 Msa0837410:intron 25.0%
!! CATTATTTAAAGCATTTCCT+GGG + chr5_4:11390862-11390881 Msa0837410:intron 25.0%
!!! TCTTTGTTGTTTGCATAATA+CGG + chr5_4:11391062-11391081 Msa0837410:intron 25.0%
!! ATTCAACTTTAAAAGTGATG+TGG - chr5_4:11391239-11391258 None:intergenic 25.0%
!!! CATCACTTTTAAAGTTGAAT+TGG + chr5_4:11391239-11391258 Msa0837410:intron 25.0%
! AAAAGTTTATAAGTGTGTGT+AGG - chr5_4:11391275-11391294 None:intergenic 25.0%
! CAATTACATGGTAGAAATAA+TGG + chr5_4:11391373-11391392 Msa0837410:intron 25.0%
!! TCCAATTTGCATAAACTTTT+AGG + chr5_4:11391418-11391437 Msa0837410:intron 25.0%
! TCCTAAAAGTTTATGCAAAT+TGG - chr5_4:11391422-11391441 None:intergenic 25.0%
! TTAAGTGAACAAGAATTAGA+AGG + chr5_4:11391670-11391689 Msa0837410:intron 25.0%
!! CTTAAAAGTATAGTTAGAGA+GGG - chr5_4:11391735-11391754 None:intergenic 25.0%
!!! TAAAAGTTGAGCCTTTTTTA+GGG - chr5_4:11392039-11392058 None:intergenic 25.0%
!! AAAAACTCAATTTTAGATGG+AGG - chr5_4:11392105-11392124 None:intergenic 25.0%
!! CACAAAAACTCAATTTTAGA+TGG - chr5_4:11392108-11392127 None:intergenic 25.0%
!!! AATGATTTTAAGGGACAATA+TGG + chr5_4:11392166-11392185 Msa0837410:intron 25.0%
! AAGTTTAGAAACTATTCTCA+AGG - chr5_4:11392359-11392378 None:intergenic 25.0%
! TTGAGAATAGTTTCTAAACT+TGG + chr5_4:11392358-11392377 Msa0837410:intron 25.0%
!! TAAACTTGGCATTTTTGTAT+TGG + chr5_4:11392372-11392391 Msa0837410:intron 25.0%
! AGTCTTCAAGAAAAATAAAC+TGG + chr5_4:11392489-11392508 Msa0837410:intron 25.0%
! GTCTTCAAGAAAAATAAACT+GGG + chr5_4:11392490-11392509 Msa0837410:intron 25.0%
! AAAGTAGAAAGAGATGTTAT+TGG + chr5_4:11392640-11392659 Msa0837410:intron 25.0%
! GAAAGACTAATTAAAACAAC+AGG - chr5_4:11392719-11392738 None:intergenic 25.0%
!!! GCAATAGTAGTTTTAAATGT+AGG + chr5_4:11392817-11392836 Msa0837410:intron 25.0%
! TTCTAAGCTCAATTATTTGA+AGG + chr5_4:11392886-11392905 Msa0837410:intron 25.0%
! TCTAAGCTCAATTATTTGAA+GGG + chr5_4:11392887-11392906 Msa0837410:intron 25.0%
! CTTATGTGAAAAAAATGAGT+TGG + chr5_4:11392932-11392951 Msa0837410:intron 25.0%
! ATACATAATCATCTTGCTTA+TGG - chr5_4:11393249-11393268 None:intergenic 25.0%
AAATGAAGATGGTGAAATGA+CGG - chr5_4:11389191-11389210 None:intergenic 30.0%
CTTCATTTACACAATCAGAT+CGG + chr5_4:11389286-11389305 Msa0837410:five_prime_UTR 30.0%
GATTATTAGATCGGAAATGA+AGG + chr5_4:11389451-11389470 Msa0837410:exon 30.0%
AAAAAGGAAAACATGGATTC+AGG + chr5_4:11389512-11389531 Msa0837410:CDS 30.0%
!! GAAAGGAAGGTACAAATTTT+GGG + chr5_4:11389544-11389563 Msa0837410:CDS 30.0%
! TAGATGTAATTTGTGTGTGT+AGG + chr5_4:11389786-11389805 Msa0837410:intron 30.0%
! TAATTTGTGTGTGTAGGAAA+TGG + chr5_4:11389792-11389811 Msa0837410:intron 30.0%
ATATTGCTGATCAAACTCAA+TGG + chr5_4:11390231-11390250 Msa0837410:intron 30.0%
AAGACTTAATTGAACGCTTA+TGG - chr5_4:11390462-11390481 None:intergenic 30.0%
GGAGAAATTTAACTCATGTT+TGG - chr5_4:11390489-11390508 None:intergenic 30.0%
CTATGTTTGCAATTTGCAAA+TGG + chr5_4:11390809-11390828 Msa0837410:intron 30.0%
ATGTTTGCAATTTGCAAATG+GGG + chr5_4:11390811-11390830 Msa0837410:intron 30.0%
! GCATTATTTAAAGCATTTCC+TGG + chr5_4:11390861-11390880 Msa0837410:intron 30.0%
AATTGTAAACCAACGAATCT+CGG - chr5_4:11391006-11391025 None:intergenic 30.0%
TGAAATCAGTTTCCATTACA+AGG + chr5_4:11391096-11391115 Msa0837410:intron 30.0%
!!! GAGATCTTGTTTTCTTTGAA+AGG + chr5_4:11391196-11391215 Msa0837410:intron 30.0%
TGTCTATTTACTTACACTGT+TGG + chr5_4:11391303-11391322 Msa0837410:intron 30.0%
!! TGCATAAACTTTTAGGAAGA+TGG + chr5_4:11391425-11391444 Msa0837410:intron 30.0%
ATATGAAGAACATTGCAACA+GGG - chr5_4:11391534-11391553 None:intergenic 30.0%
AATATGAAGAACATTGCAAC+AGG - chr5_4:11391535-11391554 None:intergenic 30.0%
TCTTCTTTCCTTGAATCTTT+GGG - chr5_4:11391595-11391614 None:intergenic 30.0%
TTCTTCTTTCCTTGAATCTT+TGG - chr5_4:11391596-11391615 None:intergenic 30.0%
TAGCATCTTGGATCAATTAA+AGG - chr5_4:11391635-11391654 None:intergenic 30.0%
TTAATTGATCCAAGATGCTA+AGG + chr5_4:11391635-11391654 Msa0837410:intron 30.0%
GAATTTCCTGTACTAAATAG+AGG - chr5_4:11391699-11391718 None:intergenic 30.0%
! CCTTAAAAGTATAGTTAGAG+AGG - chr5_4:11391736-11391755 None:intergenic 30.0%
! CCTCTCTAACTATACTTTTA+AGG + chr5_4:11391733-11391752 Msa0837410:intron 30.0%
TAATTGGTGAAGATCCATTA+TGG + chr5_4:11391979-11391998 Msa0837410:intron 30.0%
! AGAAAATACAGGTTCTAGTT+TGG + chr5_4:11392012-11392031 Msa0837410:intron 30.0%
!!! CTAAAAGTTGAGCCTTTTTT+AGG - chr5_4:11392040-11392059 None:intergenic 30.0%
GATGCAATCTAGGAATTTAA+AGG - chr5_4:11392258-11392277 None:intergenic 30.0%
! TTGAATTTAAGACTGAGCTA+AGG - chr5_4:11392994-11393013 None:intergenic 30.0%
TATGATGCAGTAAATACATC+AGG - chr5_4:11393046-11393065 None:intergenic 30.0%
AACTGACTATATGTTCTTGT+AGG + chr5_4:11393355-11393374 Msa0837410:three_prime_UTR 30.0%
CGATCTGATTGTGTAAATGA+AGG - chr5_4:11389288-11389307 None:intergenic 35.0%
TTGTTGTGGTAGATGAACAA+CGG - chr5_4:11389332-11389351 None:intergenic 35.0%
! AACATGGATTCAGGTTTGTT+TGG + chr5_4:11389521-11389540 Msa0837410:CDS 35.0%
! ACATGGATTCAGGTTTGTTT+GGG + chr5_4:11389522-11389541 Msa0837410:CDS 35.0%
!! GGAAAGGAAGGTACAAATTT+TGG + chr5_4:11389543-11389562 Msa0837410:CDS 35.0%
! AGTTTTCCTTTCTCAATCCA+TGG + chr5_4:11390027-11390046 Msa0837410:intron 35.0%
CAAGTAGTTAGTTATGTCAG+TGG - chr5_4:11390287-11390306 None:intergenic 35.0%
AAAACCAATCAACAAGACTC+AGG - chr5_4:11390755-11390774 None:intergenic 35.0%
AATTTGCAAATGGGGTTGTT+TGG + chr5_4:11390819-11390838 Msa0837410:intron 35.0%
! TTTTCCTACATAAGTCTCAC+AGG - chr5_4:11390942-11390961 None:intergenic 35.0%
ATTGTAAACCAACGAATCTC+GGG - chr5_4:11391005-11391024 None:intergenic 35.0%
ATAGTTTAACTGGAAGTTCC+TGG + chr5_4:11391557-11391576 Msa0837410:intron 35.0%
TACAATCACCCAAAGATTCA+AGG + chr5_4:11391584-11391603 Msa0837410:intron 35.0%
GATCAATTAAAGGACACTCT+GGG - chr5_4:11391625-11391644 None:intergenic 35.0%
CAATTATGACCTTAGCATCT+TGG - chr5_4:11391647-11391666 None:intergenic 35.0%
AGGTTTCCTCTATTTAGTAC+AGG + chr5_4:11391690-11391709 Msa0837410:intron 35.0%
CTTCGTCTTGGATCAATTAA+AGG - chr5_4:11391765-11391784 None:intergenic 35.0%
CAAACTTGTGACGAATTAGA+TGG + chr5_4:11391800-11391819 Msa0837410:intron 35.0%
GTCATGTCAAGTCATAAGTA+TGG + chr5_4:11391835-11391854 Msa0837410:intron 35.0%
!! CCACACTATTTCTGCATTAT+CGG - chr5_4:11391933-11391952 None:intergenic 35.0%
AATGCAGAAATAGTGTGGTT+AGG + chr5_4:11391935-11391954 Msa0837410:intron 35.0%
! TCTAGTTTGGTCCCTAAAAA+AGG + chr5_4:11392025-11392044 Msa0837410:intron 35.0%
! CTCAATTTTAGATGGAGGTT+GGG - chr5_4:11392100-11392119 None:intergenic 35.0%
! ACTCAATTTTAGATGGAGGT+TGG - chr5_4:11392101-11392120 None:intergenic 35.0%
AATGTTTGAATAGAGGACTC+AGG - chr5_4:11392519-11392538 None:intergenic 35.0%
TTTCCAAAATGATGACACAG+TGG - chr5_4:11392598-11392617 None:intergenic 35.0%
AGATAATCACTTGACTCTCA+AGG + chr5_4:11392773-11392792 Msa0837410:intron 35.0%
GATAATCACTTGACTCTCAA+GGG + chr5_4:11392774-11392793 Msa0837410:intron 35.0%
AAAAGATTGCGAAGAAACAG+TGG + chr5_4:11393192-11393211 Msa0837410:three_prime_UTR 35.0%
GAAGCATGAAAAACTGAGTA+GGG - chr5_4:11393227-11393246 None:intergenic 35.0%
AATTTGTACGACAACAAACG+TGG - chr5_4:11393334-11393353 None:intergenic 35.0%
ACTTGTGCATTTAGCATAGT+TGG - chr5_4:11393386-11393405 None:intergenic 35.0%
GCTGTGATGCAAAATGAAGA+TGG - chr5_4:11389202-11389221 None:intergenic 40.0%
ATAAATCAATAACGCGGTGC+CGG + chr5_4:11389242-11389261 Msa0837410:five_prime_UTR 40.0%
TGTTGTGGTAGATGAACAAC+GGG - chr5_4:11389331-11389350 None:intergenic 40.0%
! GATTCAGGTTTGTTTGGGAA+AGG + chr5_4:11389527-11389546 Msa0837410:CDS 40.0%
!! CGATTTTGCTTCTCGCTTTT+TGG + chr5_4:11389576-11389595 Msa0837410:CDS 40.0%
!! GCTTTTTGGTCCATGTTTAC+TGG + chr5_4:11389590-11389609 Msa0837410:CDS 40.0%
AGAAACGGTACCAGTAAACA+TGG - chr5_4:11389603-11389622 None:intergenic 40.0%
TTTGTGTGTGTAGGAAATGG+AGG + chr5_4:11389795-11389814 Msa0837410:intron 40.0%
GAATTGACAAGTGATGTTCC+TGG + chr5_4:11389919-11389938 Msa0837410:CDS 40.0%
ATAGCATCATCTCTAACACC+AGG - chr5_4:11389940-11389959 None:intergenic 40.0%
!! AAACTAACCGTGGATTGGAT+AGG - chr5_4:11390012-11390031 None:intergenic 40.0%
AAGGAAAACTAACCGTGGAT+TGG - chr5_4:11390017-11390036 None:intergenic 40.0%
TGAGAAAGGAAAACTAACCG+TGG - chr5_4:11390022-11390041 None:intergenic 40.0%
AACATTAACTAACTGCGCCA+TGG - chr5_4:11390047-11390066 None:intergenic 40.0%
TCAAACTCAATGGTCCTGTT+TGG + chr5_4:11390241-11390260 Msa0837410:intron 40.0%
TCAATGGTCCTGTTTGGATT+GGG + chr5_4:11390247-11390266 Msa0837410:intron 40.0%
TCGTATAACCCAATCCAAAC+AGG - chr5_4:11390258-11390277 None:intergenic 40.0%
GAGTTGTCAACACCTTGTAA+TGG - chr5_4:11391111-11391130 None:intergenic 40.0%
GTGATGTGGATGCATAAAGA+GGG - chr5_4:11391225-11391244 None:intergenic 40.0%
AGTGATGTGGATGCATAAAG+AGG - chr5_4:11391226-11391245 None:intergenic 40.0%
GTGTCATCACGAGTTAGTAA+AGG - chr5_4:11391349-11391368 None:intergenic 40.0%
GATGACACGACTCAATTACA+TGG + chr5_4:11391361-11391380 Msa0837410:intron 40.0%
GGATCAATTAAAGGACACTC+TGG - chr5_4:11391626-11391645 None:intergenic 40.0%
! ATGAACTGTTAGCTTCGTCT+TGG - chr5_4:11391777-11391796 None:intergenic 40.0%
CCGATAATGCAGAAATAGTG+TGG + chr5_4:11391930-11391949 Msa0837410:intron 40.0%
AAGATCCATTATGGTCACTG+AGG + chr5_4:11391988-11392007 Msa0837410:intron 40.0%
TTCTTCCTCAGTGACCATAA+TGG - chr5_4:11391996-11392015 None:intergenic 40.0%
GTCACTGAGGAAGAAAATAC+AGG + chr5_4:11392001-11392020 Msa0837410:intron 40.0%
GTCCTCGCAACAAATAAACT+AGG + chr5_4:11392059-11392078 Msa0837410:intron 40.0%
! GTCCTAGTTTATTTGTTGCG+AGG - chr5_4:11392064-11392083 None:intergenic 40.0%
TCAGTCTGTAGTCATTGTCA+GGG - chr5_4:11392193-11392212 None:intergenic 40.0%
TCAGGAAGAAGATGCAATCT+AGG - chr5_4:11392268-11392287 None:intergenic 40.0%
CTATTCTCAAGGACCAGAAT+AGG - chr5_4:11392348-11392367 None:intergenic 40.0%
TGCTCCTTGAGAAAAAAACC+TGG + chr5_4:11392427-11392446 Msa0837410:intron 40.0%
GCTCCTTGAGAAAAAAACCT+GGG + chr5_4:11392428-11392447 Msa0837410:intron 40.0%
!!! GTTCCCAGGTTTTTTTCTCA+AGG - chr5_4:11392434-11392453 None:intergenic 40.0%
AAAAAACCTGGGAACCAGTT+TGG + chr5_4:11392439-11392458 Msa0837410:intron 40.0%
!! TGTTTTCTAAGGGACCAAAC+TGG - chr5_4:11392456-11392475 None:intergenic 40.0%
! TGTCCACTGTGTCATCATTT+TGG + chr5_4:11392592-11392611 Msa0837410:intron 40.0%
ACAGGAATGCAAATGTGAAG+AGG - chr5_4:11392701-11392720 None:intergenic 40.0%
GGAATTTAGCGAAAGTAGAG+AGG + chr5_4:11392795-11392814 Msa0837410:intron 40.0%
! CATCATATTTCAGAGAGCAC+AGG + chr5_4:11393059-11393078 Msa0837410:intron 40.0%
! TTCCTTTGTCAGCTTGCTTA+AGG - chr5_4:11393098-11393117 None:intergenic 40.0%
ACAAAGGAAAAGAAGCGATG+CGG + chr5_4:11393109-11393128 Msa0837410:CDS 40.0%
! GGAAGCATGAAAAACTGAGT+AGG - chr5_4:11393228-11393247 None:intergenic 40.0%
ATGTGAATGTGAGACACCAC+CGG - chr5_4:11389264-11389283 None:intergenic 45.0%
TCGGAAATGAAGGATGACGA+TGG + chr5_4:11389461-11389480 Msa0837410:exon 45.0%
CGGAAATGAAGGATGACGAT+GGG + chr5_4:11389462-11389481 Msa0837410:exon 45.0%
! CAGGTTTGTTTGGGAAAGGA+AGG + chr5_4:11389531-11389550 Msa0837410:CDS 45.0%
ACCAGACCAACGAAGAGAAA+CGG - chr5_4:11389618-11389637 None:intergenic 45.0%
! AGTATCGAGGTCACTGGATA+AGG - chr5_4:11389651-11389670 None:intergenic 45.0%
ACATCGAGATCGTCGTGAAT+CGG - chr5_4:11389674-11389693 None:intergenic 45.0%
TGTGTAGGAAATGGAGGAGA+GGG + chr5_4:11389801-11389820 Msa0837410:intron 45.0%
AGAAAGTGGTGAGGCATATG+TGG + chr5_4:11389824-11389843 Msa0837410:CDS 45.0%
GAAAGTGGTGAGGCATATGT+GGG + chr5_4:11389825-11389844 Msa0837410:CDS 45.0%
AAAGCCTCTTGCCAAAACCT+CGG - chr5_4:11389883-11389902 None:intergenic 45.0%
!! GTTTTGGCAAGAGGCTTTTG+AGG + chr5_4:11389885-11389904 Msa0837410:CDS 45.0%
CTCAATGGTCCTGTTTGGAT+TGG + chr5_4:11390246-11390265 Msa0837410:intron 45.0%
CCAATCAACAAGACTCAGGT+TGG - chr5_4:11390751-11390770 None:intergenic 45.0%
!! CCAACCTGAGTCTTGTTGAT+TGG + chr5_4:11390748-11390767 Msa0837410:intron 45.0%
TGCAAATGGGGTTGTTTGGT+TGG + chr5_4:11390823-11390842 Msa0837410:intron 45.0%
GCAAATGGGGTTGTTTGGTT+GGG + chr5_4:11390824-11390843 Msa0837410:intron 45.0%
CAAATGGGGTTGTTTGGTTG+GGG + chr5_4:11390825-11390844 Msa0837410:intron 45.0%
CATCATGAGACTTCTTACCC+AGG - chr5_4:11390882-11390901 None:intergenic 45.0%
TTCGCCTGTGAGACTTATGT+AGG + chr5_4:11390935-11390954 Msa0837410:intron 45.0%
GTTTAACTGGAAGTTCCTGG+TGG + chr5_4:11391560-11391579 Msa0837410:intron 45.0%
ATGAAGCAAAGCTGTCTGTC+TGG + chr5_4:11391895-11391914 Msa0837410:intron 45.0%
TTTAGATGGAGGTTGGGAGA+GGG - chr5_4:11392094-11392113 None:intergenic 45.0%
! TTTTAGATGGAGGTTGGGAG+AGG - chr5_4:11392095-11392114 None:intergenic 45.0%
GTCAGTCTGTAGTCATTGTC+AGG - chr5_4:11392194-11392213 None:intergenic 45.0%
ATAACGTCCAGGACGAAGAA+AGG - chr5_4:11392295-11392314 None:intergenic 45.0%
TTCGTCCTGGACGTTATTGA+AGG + chr5_4:11392298-11392317 Msa0837410:intron 45.0%
AAGGTCCTTCAATAACGTCC+AGG - chr5_4:11392306-11392325 None:intergenic 45.0%
TGGACGTTATTGAAGGACCT+TGG + chr5_4:11392305-11392324 Msa0837410:intron 45.0%
ATTGAAGGACCTTGGAGAAC+TGG + chr5_4:11392313-11392332 Msa0837410:intron 45.0%
TCTTGAACACCAGTTCTCCA+AGG - chr5_4:11392325-11392344 None:intergenic 45.0%
CTGGTGTTCAAGACCTATTC+TGG + chr5_4:11392332-11392351 Msa0837410:intron 45.0%
AATGTGAAGAGGCTCAGATG+CGG - chr5_4:11392690-11392709 None:intergenic 45.0%
GGCTTCTTCGCATATGTTAC+TGG - chr5_4:11392973-11392992 None:intergenic 45.0%
AGCCTTAAGCAAGCTGACAA+AGG + chr5_4:11393093-11393112 Msa0837410:CDS 45.0%
AGATTGCGAAGAAACAGTGG+TGG + chr5_4:11393195-11393214 Msa0837410:three_prime_UTR 45.0%
GATTGCGAAGAAACAGTGGT+GGG + chr5_4:11393196-11393215 Msa0837410:three_prime_UTR 45.0%
!! TTTAAAAGTTAAATAATAAT+TGG + chr5_4:11391963-11391982 Msa0837410:intron 5.0%
GACGGCGGCGATTAACAAAA+AGG + chr5_4:11389496-11389515 Msa0837410:CDS 50.0%
CTGGTACCGTTTCTCTTCGT+TGG + chr5_4:11389609-11389628 Msa0837410:CDS 50.0%
ACCGTTTCTCTTCGTTGGTC+TGG + chr5_4:11389614-11389633 Msa0837410:CDS 50.0%
!! AATCGGAGTATCGAGGTCAC+TGG - chr5_4:11389657-11389676 None:intergenic 50.0%
GTGTGTAGGAAATGGAGGAG+AGG + chr5_4:11389800-11389819 Msa0837410:intron 50.0%
AATGGAGGAGAGGGAGAAAG+TGG + chr5_4:11389810-11389829 Msa0837410:CDS 50.0%
ATGTGTACACCAACAGCCGT+AGG + chr5_4:11389848-11389867 Msa0837410:CDS 50.0%
TCCACCTCCTATCCAATCCA+CGG + chr5_4:11390002-11390021 Msa0837410:CDS 50.0%
!! CTAACCGTGGATTGGATAGG+AGG - chr5_4:11390009-11390028 None:intergenic 50.0%
! ACTGCGCCATGGATTGAGAA+AGG - chr5_4:11390036-11390055 None:intergenic 50.0%
TCATGCTTCCCGAGATTCGT+TGG + chr5_4:11390994-11391013 Msa0837410:intron 50.0%
TTTGGGTGATTGTAGCCACC+AGG - chr5_4:11391578-11391597 None:intergenic 50.0%
!! AGGACGAAGAAAGGCGTTTC+AGG - chr5_4:11392286-11392305 None:intergenic 50.0%
TGAAACGCCTTTCTTCGTCC+TGG + chr5_4:11392285-11392304 Msa0837410:intron 50.0%
GCGTGCTTAAAGACCACTCT+AGG + chr5_4:11393131-11393150 Msa0837410:exon 50.0%
! ACCACTCTAGGAGCAGTCAA+GGG + chr5_4:11393143-11393162 Msa0837410:three_prime_UTR 50.0%
! AATCAATAACGCGGTGCCGG+TGG + chr5_4:11389245-11389264 Msa0837410:five_prime_UTR 55.0%
!! CGTCGTGAATCGGAGTATCG+AGG - chr5_4:11389664-11389683 None:intergenic 55.0%
AGGAGAGGGAGAAAGTGGTG+AGG + chr5_4:11389815-11389834 Msa0837410:CDS 55.0%
ACACCAACAGCCGTAGGATC+AGG + chr5_4:11389854-11389873 Msa0837410:CDS 55.0%
CAACCTGATCCTACGGCTGT+TGG - chr5_4:11389860-11389879 None:intergenic 55.0%
ACCTCGGCAACCTGATCCTA+CGG - chr5_4:11389867-11389886 None:intergenic 55.0%
!! GGATCAGGTTGCCGAGGTTT+TGG + chr5_4:11389869-11389888 Msa0837410:CDS 55.0%
!! GTTGCCGAGGTTTTGGCAAG+AGG + chr5_4:11389876-11389895 Msa0837410:CDS 55.0%
!! ACCGTGGATTGGATAGGAGG+TGG - chr5_4:11390006-11390025 None:intergenic 55.0%
GGCTGTGTCAGCAAACAGAG+AGG + chr5_4:11391394-11391413 Msa0837410:intron 55.0%
! AAGGGACCAAACTGGTTCCC+AGG - chr5_4:11392448-11392467 None:intergenic 55.0%
GGTCCTAGACCTAGTGTTGC+CGG + chr5_4:11392661-11392680 Msa0837410:intron 55.0%
GTCCTAGACCTAGTGTTGCC+GGG + chr5_4:11392662-11392681 Msa0837410:intron 55.0%
! GACCACTCTAGGAGCAGTCA+AGG + chr5_4:11393142-11393161 Msa0837410:three_prime_UTR 55.0%
ACCCTTGACTGCTCCTAGAG+TGG - chr5_4:11393147-11393166 None:intergenic 55.0%
TCTAGGAGCAGTCAAGGGTC+TGG + chr5_4:11393148-11393167 Msa0837410:three_prime_UTR 55.0%
! TCAAGGGTCTGGCTTGTGCT+TGG + chr5_4:11393159-11393178 Msa0837410:three_prime_UTR 55.0%
! CGATGGGCTTCCAACGACGA+CGG + chr5_4:11389478-11389497 Msa0837410:CDS 60.0%
TTAATCGCCGCCGTCGTCGT+TGG - chr5_4:11389491-11389510 None:intergenic 60.0%
CACCCGGCAACACTAGGTCT+AGG - chr5_4:11392667-11392686 None:intergenic 60.0%
TGGGCTTCCAACGACGACGG+CGG + chr5_4:11389481-11389500 Msa0837410:CDS 65.0%
! GCCGTAGGATCAGGTTGCCG+AGG + chr5_4:11389863-11389882 Msa0837410:CDS 65.0%
ATGCGGCACCCGGCAACACT+AGG - chr5_4:11392673-11392692 None:intergenic 65.0%
AGAGGCTCAGATGCGGCACC+CGG - chr5_4:11392683-11392702 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 11389188 11393512 11389188 ID=Msa0837410;Name=Msa0837410
chr5_4 mRNA 11389188 11393512 11389188 ID=Msa0837410-mRNA-1;Parent=Msa0837410;Name=Msa0837410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=279|1|1|1|1|1|3|372|171
chr5_4 exon 11389188 11389697 11389188 ID=Msa0837410-mRNA-1:exon:4943;Parent=Msa0837410-mRNA-1
chr5_4 exon 11389808 11390023 11389808 ID=Msa0837410-mRNA-1:exon:4944;Parent=Msa0837410-mRNA-1
chr5_4 exon 11393072 11393512 11393072 ID=Msa0837410-mRNA-1:exon:4945;Parent=Msa0837410-mRNA-1
chr5_4 five_prime_UTR 11389188 11389466 11389188 ID=Msa0837410-mRNA-1:five_prime_utr;Parent=Msa0837410-mRNA-1
chr5_4 CDS 11389467 11389697 11389467 ID=Msa0837410-mRNA-1:cds;Parent=Msa0837410-mRNA-1
chr5_4 CDS 11389808 11390023 11389808 ID=Msa0837410-mRNA-1:cds;Parent=Msa0837410-mRNA-1
chr5_4 CDS 11393072 11393140 11393072 ID=Msa0837410-mRNA-1:cds;Parent=Msa0837410-mRNA-1
chr5_4 three_prime_UTR 11393141 11393512 11393141 ID=Msa0837410-mRNA-1:three_prime_utr;Parent=Msa0837410-mRNA-1
Gene Sequence

>Msa0837410

ATGAAGGATGACGATGGGCTTCCAACGACGACGGCGGCGATTAACAAAAAGGAAAACATGGATTCAGGTTTGTTTGGGAAAGGAAGGTACAAATTTTGGGCATTAGCTGCGATTTTGCTTCTCGCTTTTTGGTCCATGTTTACTGGTACCGTTTCTCTTCGTTGGTCTGGTAATCTTAATACCTTATCCAGTGACCTCGATACTCCGATTCACGACGATCTCGATGTTCTCGAAATGGAGGAGAGGGAGAAAGTGGTGAGGCATATGTGGGATGTGTACACCAACAGCCGTAGGATCAGGTTGCCGAGGTTTTGGCAAGAGGCTTTTGAGGCTGCTTATGAAGAATTGACAAGTGATGTTCCTGGTGTTAGAGATGATGCTATTACTGAGATCGCTAAGATGTCTGTGCGTTCTGTTAATTATGATCCACCTCCTATCCAATCCACGAGAGCACAGGAATTTAGTAAAAGCCTTAAGCAAGCTGACAAAGGAAAAGAAGCGATGCGGCGTGCTTAA

Protein sequence

>Msa0837410

MKDDDGLPTTTAAINKKENMDSGLFGKGRYKFWALAAILLLAFWSMFTGTVSLRWSGNLNTLSSDLDTPIHDDLDVLEMEEREKVVRHMWDVYTNSRRIRLPRFWQEAFEAAYEELTSDVPGVRDDAITEIAKMSVRSVNYDPPPIQSTRAQEFSKSLKQADKGKEAMRRA*