Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020510 | sp|Q9M2A1|PP263_ARATH | 51.908 | 393 | 175 | 4 | 14 | 400 | 31 | 415 | 5.51e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0020510 | 0.803244 | 3.823721e-49 | -8.615850e-47 |
| Msa0011720 | Msa0020510 | 0.805345 | 1.396009e-49 | -8.615850e-47 |
| Msa0020510 | Msa0094100 | 0.815294 | 9.950246e-52 | -8.615850e-47 |
| Msa0020510 | Msa0105340 | 0.819279 | 1.262551e-52 | -8.615850e-47 |
| Msa0020510 | Msa0151690 | 0.824022 | 1.011074e-53 | -8.615850e-47 |
| Msa0020510 | Msa0162030 | 0.800406 | 1.463205e-48 | -8.615850e-47 |
| Msa0020510 | Msa0162050 | 0.801538 | 8.588743e-49 | -8.615850e-47 |
| Msa0020510 | Msa0162070 | 0.802000 | 6.902800e-49 | -8.615850e-47 |
| Msa0020510 | Msa0208630 | 0.812322 | 4.493553e-51 | -8.615850e-47 |
| Msa0020510 | Msa0217400 | 0.800778 | 1.228415e-48 | -8.615850e-47 |
| Msa0020510 | Msa0265820 | 0.822580 | 2.195147e-53 | -8.615850e-47 |
| Msa0020510 | Msa0342200 | 0.802540 | 5.345898e-49 | -8.615850e-47 |
| Msa0020510 | Msa0371610 | 0.819214 | 1.306334e-52 | -8.615850e-47 |
| Msa0020510 | Msa0409820 | 0.802296 | 6.002043e-49 | -8.615850e-47 |
| Msa0020510 | Msa0419970 | 0.800213 | 1.601599e-48 | -8.615850e-47 |
| Msa0020510 | Msa0437710 | 0.848904 | 4.551216e-60 | -8.615850e-47 |
| Msa0020510 | Msa0442880 | 0.804861 | 1.762456e-49 | -8.615850e-47 |
| Msa0020510 | Msa0490300 | 0.814305 | 1.648776e-51 | -8.615850e-47 |
| Msa0020510 | Msa0490350 | 0.801461 | 8.908852e-49 | -8.615850e-47 |
| Msa0020510 | Msa0508200 | 0.805373 | 1.377748e-49 | -8.615850e-47 |
| Msa0020510 | Msa0509970 | 0.848732 | 5.081457e-60 | -8.615850e-47 |
| Msa0020510 | Msa0511890 | 0.816036 | 6.802963e-52 | -8.615850e-47 |
| Msa0020510 | Msa0546380 | 0.804067 | 2.580820e-49 | -8.615850e-47 |
| Msa0020510 | Msa0549740 | 0.814821 | 1.267046e-51 | -8.615850e-47 |
| Msa0020510 | Msa0581340 | 0.805848 | 1.094812e-49 | -8.615850e-47 |
| Msa0020510 | Msa0620640 | 0.800841 | 1.192823e-48 | -8.615850e-47 |
| Msa0020510 | Msa0621890 | 0.824162 | 9.371686e-54 | -8.615850e-47 |
| Msa0020510 | Msa0647000 | 0.819898 | 9.119903e-53 | -8.615850e-47 |
| Msa0020510 | Msa0726610 | 0.814367 | 1.597711e-51 | -8.615850e-47 |
| Msa0020510 | Msa0769800 | 0.816154 | 6.402039e-52 | -8.615850e-47 |
| Msa0020510 | Msa0770430 | 0.800640 | 1.310615e-48 | -8.615850e-47 |
| Msa0020510 | Msa0792510 | 0.810512 | 1.110963e-50 | -8.615850e-47 |
| Msa0020510 | Msa0835510 | 0.803062 | 4.170252e-49 | -8.615850e-47 |
| Msa0020510 | Msa0908170 | 0.800467 | 1.421418e-48 | -8.615850e-47 |
| Msa0020510 | Msa0951720 | 0.820679 | 6.037600e-53 | -8.615850e-47 |
| Msa0020510 | Msa0969570 | 0.800207 | 1.605744e-48 | -8.615850e-47 |
| Msa0020510 | Msa0969700 | 0.800688 | 1.281866e-48 | -8.615850e-47 |
| Msa0020510 | Msa0988500 | 0.817768 | 2.778653e-52 | -8.615850e-47 |
| Msa0020510 | Msa1008490 | 0.843168 | 1.653626e-58 | -8.615850e-47 |
| Msa0020510 | Msa1020710 | 0.812586 | 3.935611e-51 | -8.615850e-47 |
| Msa0020510 | Msa1036390 | 0.809812 | 1.572871e-50 | -8.615850e-47 |
| Msa0020510 | Msa1069300 | 0.804298 | 2.309774e-49 | -8.615850e-47 |
| Msa0020510 | Msa1076680 | 0.814374 | 1.591527e-51 | -8.615850e-47 |
| Msa0020510 | Msa1099030 | 0.816628 | 5.014845e-52 | -8.615850e-47 |
| Msa0020510 | Msa1151960 | 0.801780 | 7.660961e-49 | -8.615850e-47 |
| Msa0020510 | Msa1154160 | 0.828797 | 7.363948e-55 | -8.615850e-47 |
| Msa0020510 | Msa1206020 | 0.801706 | 7.933298e-49 | -8.615850e-47 |
| Msa0020510 | Msa1220230 | 0.803055 | 4.183812e-49 | -8.615850e-47 |
| Msa0020510 | Msa1221260 | 0.800452 | 1.431819e-48 | -8.615850e-47 |
| Msa0020510 | Msa1295010 | 0.802802 | 4.718650e-49 | -8.615850e-47 |
| Msa0020510 | Msa1329990 | 0.803561 | 3.287351e-49 | -8.615850e-47 |
| Msa0020510 | Msa1337340 | 0.827929 | 1.192161e-54 | -8.615850e-47 |
| Msa0020510 | Msa1373950 | 0.824505 | 7.782628e-54 | -8.615850e-47 |
| Msa0020510 | Msa1386520 | 0.828591 | 8.256016e-55 | -8.615850e-47 |
| Msa0020510 | Msa1429420 | 0.801535 | 8.599406e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020510 | MtrunA17_Chr4g0020931 | 94.527 | 402 | 17 | 3 | 1 | 400 | 1 | 399 | 0.0 | 747 |
| Msa0020510 | MtrunA17_Chr1g0171891 | 94.030 | 402 | 18 | 3 | 1 | 400 | 1 | 398 | 0.0 | 734 |
| Msa0020510 | MtrunA17_Chr5g0428491 | 83.203 | 256 | 36 | 2 | 45 | 300 | 73 | 321 | 2.22e-141 | 405 |
| Msa0020510 | MtrunA17_Chr5g0428501 | 82.540 | 63 | 11 | 0 | 337 | 399 | 1 | 63 | 2.81e-32 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020510 | AT3G42630.1 | 51.908 | 393 | 175 | 4 | 14 | 400 | 31 | 415 | 5.60e-142 | 410 |
| Msa0020510 | AT4G14190.1 | 26.426 | 333 | 222 | 7 | 70 | 388 | 172 | 495 | 9.67e-22 | 97.4 |
Find 73 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTACGACGTTTAATATT+AGG | 0.162570 | 1_1:+35550013 | Msa0020510:CDS |
| ATAGGAGGAACCAGATATTT+TGG | 0.193003 | 1_1:+35550361 | Msa0020510:CDS |
| TAGAAAGCTTGGAAGGAATT+TGG | 0.211995 | 1_1:+35550158 | Msa0020510:CDS |
| GTTCCTGATTTGGTTACTTA+TGG | 0.229795 | 1_1:+35550111 | Msa0020510:CDS |
| GAAGAGAAAATTCTATGAAT+TGG | 0.262799 | 1_1:+35549843 | Msa0020510:CDS |
| ATGTTACACTACACACAAAA+TGG | 0.264591 | 1_1:+35549403 | Msa0020510:CDS |
| AACAACAGAAATGGAGTTAT+AGG | 0.284479 | 1_1:+35550307 | Msa0020510:CDS |
| GCTTGCAGAGAGAGTTTGTT+AGG | 0.289369 | 1_1:+35549965 | Msa0020510:CDS |
| GTTAGTAGTTCCAAAATATC+TGG | 0.291120 | 1_1:-35550371 | None:intergenic |
| TGTTACGACGTTTAATATTA+GGG | 0.297675 | 1_1:+35550014 | Msa0020510:CDS |
| ATTGTGAATAAGTAATGAAT+TGG | 0.304763 | 1_1:-35549326 | None:intergenic |
| GTGATTAGGGCTATGGCTTA+TGG | 0.328397 | 1_1:+35549811 | Msa0020510:CDS |
| AATGAAATGGAGAATGCTTA+TGG | 0.332682 | 1_1:+35549751 | Msa0020510:CDS |
| GATTGAGGAAAATGTGATTA+GGG | 0.333668 | 1_1:+35549798 | Msa0020510:CDS |
| TGAAAAGGTTGTTCCTGATT+TGG | 0.336453 | 1_1:+35550101 | Msa0020510:CDS |
| TCATTGGCAATATCTTGTTT+TGG | 0.336662 | 1_1:+35549607 | Msa0020510:CDS |
| TACAGATCCGTTTGTGTTTG+AGG | 0.346471 | 1_1:+35550227 | Msa0020510:CDS |
| ACAACAGAAATGGAGTTATA+GGG | 0.350987 | 1_1:+35550308 | Msa0020510:CDS |
| TTTGTTAGGATGGTTGAATC+AGG | 0.352533 | 1_1:+35549979 | Msa0020510:CDS |
| TGATTGAGGAAAATGTGATT+AGG | 0.365093 | 1_1:+35549797 | Msa0020510:CDS |
| ATGGAAGGTTTAAGAGATCT+AGG | 0.371453 | 1_1:+35549770 | Msa0020510:CDS |
| AATATCTTAAGAAACATTAT+AGG | 0.375645 | 1_1:+35550343 | Msa0020510:CDS |
| GGTTTAGGTAGGAGAAATGT+TGG | 0.378690 | 1_1:+35549886 | Msa0020510:CDS |
| TGCAGGAAACTTAAAATTGA+TGG | 0.380524 | 1_1:+35549633 | Msa0020510:CDS |
| AAGAGAAAATTCTATGAATT+GGG | 0.388525 | 1_1:+35549844 | Msa0020510:CDS |
| TTTGTTAGAGATGTTGGTTT+AGG | 0.396561 | 1_1:+35549871 | Msa0020510:CDS |
| GGTGAGTTTGTTAGAGATGT+TGG | 0.404844 | 1_1:+35549865 | Msa0020510:CDS |
| AATCAATGAAATGGTTTCAA+AGG | 0.408380 | 1_1:+35549663 | Msa0020510:CDS |
| AAGGGTGAAATGAACTGTTT+AGG | 0.410470 | 1_1:-35549462 | None:intergenic |
| GGAAGAAACAATCAATGAAA+TGG | 0.415135 | 1_1:+35549654 | Msa0020510:CDS |
| CAACCATAAGTAACCAAATC+AGG | 0.419881 | 1_1:-35550114 | None:intergenic |
| ACAAGACACAACAACAGAAA+TGG | 0.420204 | 1_1:+35550298 | Msa0020510:CDS |
| TTGTGTTGTGGAGGCTTACT+TGG | 0.423615 | 1_1:+35550134 | Msa0020510:CDS |
| ATCAATGAAATGGTTTCAAA+GGG | 0.437570 | 1_1:+35549664 | Msa0020510:CDS |
| ATCTTAGTATTGAACATATG+AGG | 0.444340 | 1_1:+35550076 | Msa0020510:CDS |
| AGGTGACTTTCATTTGAGTT+CGG | 0.445273 | 1_1:+35550260 | Msa0020510:CDS |
| GACGTTTAATATTAGGGCTA+TGG | 0.449092 | 1_1:+35550020 | Msa0020510:CDS |
| CGAGAATGATGGGGTATTTG+TGG | 0.450056 | 1_1:-35549265 | None:intergenic |
| ATGAGTAAAACTGAGGCAAA+AGG | 0.460758 | 1_1:-35549588 | None:intergenic |
| GGAAAATGTGATTAGGGCTA+TGG | 0.480637 | 1_1:+35549804 | Msa0020510:CDS |
| GCTTACTTGGATAGAAAGCT+TGG | 0.481941 | 1_1:+35550147 | Msa0020510:CDS |
| GGTTGAATCAGGGTTTCGTC+CGG | 0.489825 | 1_1:+35549990 | Msa0020510:CDS |
| GCAGAGAGAGTTTGTTAGGA+TGG | 0.492223 | 1_1:+35549969 | Msa0020510:CDS |
| GTTTAGGTAGGAGAAATGTT+GGG | 0.493418 | 1_1:+35549887 | Msa0020510:CDS |
| TTGTGAATAAGTAATGAATT+GGG | 0.501393 | 1_1:-35549325 | None:intergenic |
| ATATTAAACGTCGTAACATC+CGG | 0.502209 | 1_1:-35550009 | None:intergenic |
| TTAGAGATGTTGGTTTAGGT+AGG | 0.503038 | 1_1:+35549875 | Msa0020510:CDS |
| AATATTATTATGAGAAGAGA+GGG | 0.513544 | 1_1:-35549203 | None:intergenic |
| TTGTTAGGATGGTTGAATCA+GGG | 0.518440 | 1_1:+35549980 | Msa0020510:CDS |
| TGATGATGTTACGAGAATGA+TGG | 0.522137 | 1_1:-35549276 | None:intergenic |
| TGAACATATGAGGAGTGAAA+AGG | 0.526259 | 1_1:+35550086 | Msa0020510:CDS |
| CCTAAAACCTCAAACACAAA+CGG | 0.528045 | 1_1:-35550234 | None:intergenic |
| GAATATTATTATGAGAAGAG+AGG | 0.528055 | 1_1:-35549204 | None:intergenic |
| TGAGTAAAACTGAGGCAAAA+GGG | 0.534756 | 1_1:-35549587 | None:intergenic |
| TACTTATGGTTGTGTTGTGG+AGG | 0.538029 | 1_1:+35550125 | Msa0020510:CDS |
| TAGAAATGAAATGAAGAGAA+GGG | 0.540554 | 1_1:-35549480 | None:intergenic |
| GGTTACTTATGGTTGTGTTG+TGG | 0.542271 | 1_1:+35550122 | Msa0020510:CDS |
| TTAGAAATGAAATGAAGAGA+AGG | 0.544711 | 1_1:-35549481 | None:intergenic |
| ATTATGAGAAGAGAGGGAAA+TGG | 0.544864 | 1_1:-35549197 | None:intergenic |
| ACTTGGATAGAAAGCTTGGA+AGG | 0.554688 | 1_1:+35550151 | Msa0020510:CDS |
| AAATGGAGAATGCTTATGGA+AGG | 0.557066 | 1_1:+35549755 | Msa0020510:CDS |
| GATGATGTTACGAGAATGAT+GGG | 0.563809 | 1_1:-35549275 | None:intergenic |
| AACGGATCTGTAAACAATCT+CGG | 0.566471 | 1_1:-35550216 | None:intergenic |
| TTCATCAATCTCAAACCACA+TGG | 0.575866 | 1_1:+35549431 | Msa0020510:CDS |
| TGACTTTCATTTGAGTTCGG+AGG | 0.582232 | 1_1:+35550263 | Msa0020510:CDS |
| ATCTTAAGAAACATTATAGG+AGG | 0.601959 | 1_1:+35550346 | Msa0020510:CDS |
| GTTTAGGAGTTGTTCCCATG+TGG | 0.602834 | 1_1:-35549446 | None:intergenic |
| TTGTGGTGAAGATGAAGATG+AGG | 0.606333 | 1_1:-35549248 | None:intergenic |
| TGATATGATCAAATTTGCGT+TGG | 0.613777 | 1_1:-35549525 | None:intergenic |
| GTGTAGTGTAACATCAATGA+AGG | 0.639366 | 1_1:-35549394 | None:intergenic |
| TCATCAATCTCAAACCACAT+GGG | 0.663308 | 1_1:+35549432 | Msa0020510:CDS |
| ATTGCCAATGAGTAAAACTG+AGG | 0.682844 | 1_1:-35549595 | None:intergenic |
| ATGATGTTACGAGAATGATG+GGG | 0.803014 | 1_1:-35549274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATCTTAAGAAACATTAT+AGG | + | chr1_1:35550343-35550362 | Msa0020510:CDS | 15.0% |
| !! | AATATCTTAAGAAACATTAT+AGG | + | chr1_1:35550343-35550362 | Msa0020510:CDS | 15.0% |
| !! | AATATTATTATGAGAAGAGA+GGG | - | chr1_1:35549206-35549225 | None:intergenic | 20.0% |
| !! | TTGTGAATAAGTAATGAATT+GGG | - | chr1_1:35549328-35549347 | None:intergenic | 20.0% |
| !! | ATTGTGAATAAGTAATGAAT+TGG | - | chr1_1:35549329-35549348 | None:intergenic | 20.0% |
| !!! | CTTTTGTATTATAGTGTTTT+TGG | + | chr1_1:35549721-35549740 | Msa0020510:CDS | 20.0% |
| !! | AAGAGAAAATTCTATGAATT+GGG | + | chr1_1:35549844-35549863 | Msa0020510:CDS | 20.0% |
| !! | AATATTATTATGAGAAGAGA+GGG | - | chr1_1:35549206-35549225 | None:intergenic | 20.0% |
| !! | TTGTGAATAAGTAATGAATT+GGG | - | chr1_1:35549328-35549347 | None:intergenic | 20.0% |
| !! | ATTGTGAATAAGTAATGAAT+TGG | - | chr1_1:35549329-35549348 | None:intergenic | 20.0% |
| !!! | CTTTTGTATTATAGTGTTTT+TGG | + | chr1_1:35549721-35549740 | Msa0020510:CDS | 20.0% |
| !! | AAGAGAAAATTCTATGAATT+GGG | + | chr1_1:35549844-35549863 | Msa0020510:CDS | 20.0% |
| ! | GAATATTATTATGAGAAGAG+AGG | - | chr1_1:35549207-35549226 | None:intergenic | 25.0% |
| !!! | TTGCTGAAAAATTGGTTTTT+TGG | - | chr1_1:35549305-35549324 | None:intergenic | 25.0% |
| ! | TAGAAATGAAATGAAGAGAA+GGG | - | chr1_1:35549483-35549502 | None:intergenic | 25.0% |
| ! | TTAGAAATGAAATGAAGAGA+AGG | - | chr1_1:35549484-35549503 | None:intergenic | 25.0% |
| ! | AATCAATGAAATGGTTTCAA+AGG | + | chr1_1:35549663-35549682 | Msa0020510:CDS | 25.0% |
| ! | ATCAATGAAATGGTTTCAAA+GGG | + | chr1_1:35549664-35549683 | Msa0020510:CDS | 25.0% |
| !! | TTTCGACTTGATTCAAAAAT+AGG | + | chr1_1:35549688-35549707 | Msa0020510:CDS | 25.0% |
| !!! | TTTTGGTAGTTTGAATGAAA+TGG | + | chr1_1:35549738-35549757 | Msa0020510:CDS | 25.0% |
| ! | GAAGAGAAAATTCTATGAAT+TGG | + | chr1_1:35549843-35549862 | Msa0020510:CDS | 25.0% |
| ! | ATGTTACGACGTTTAATATT+AGG | + | chr1_1:35550013-35550032 | Msa0020510:CDS | 25.0% |
| ! | TGTTACGACGTTTAATATTA+GGG | + | chr1_1:35550014-35550033 | Msa0020510:CDS | 25.0% |
| !! | ATCTTAGTATTGAACATATG+AGG | + | chr1_1:35550076-35550095 | Msa0020510:CDS | 25.0% |
| !!! | GGAGTTTGTTTTGAATAAAA+TGG | + | chr1_1:35550179-35550198 | Msa0020510:CDS | 25.0% |
| !!! | TGTTTTGAATAAAATGGATG+TGG | + | chr1_1:35550185-35550204 | Msa0020510:CDS | 25.0% |
| ! | ATCTTAAGAAACATTATAGG+AGG | + | chr1_1:35550346-35550365 | Msa0020510:CDS | 25.0% |
| ! | GAATATTATTATGAGAAGAG+AGG | - | chr1_1:35549207-35549226 | None:intergenic | 25.0% |
| !!! | TTGCTGAAAAATTGGTTTTT+TGG | - | chr1_1:35549305-35549324 | None:intergenic | 25.0% |
| ! | TAGAAATGAAATGAAGAGAA+GGG | - | chr1_1:35549483-35549502 | None:intergenic | 25.0% |
| ! | TTAGAAATGAAATGAAGAGA+AGG | - | chr1_1:35549484-35549503 | None:intergenic | 25.0% |
| ! | AATCAATGAAATGGTTTCAA+AGG | + | chr1_1:35549663-35549682 | Msa0020510:CDS | 25.0% |
| ! | ATCAATGAAATGGTTTCAAA+GGG | + | chr1_1:35549664-35549683 | Msa0020510:CDS | 25.0% |
| !! | TTTCGACTTGATTCAAAAAT+AGG | + | chr1_1:35549688-35549707 | Msa0020510:CDS | 25.0% |
| !!! | TTTTGGTAGTTTGAATGAAA+TGG | + | chr1_1:35549738-35549757 | Msa0020510:CDS | 25.0% |
| ! | GAAGAGAAAATTCTATGAAT+TGG | + | chr1_1:35549843-35549862 | Msa0020510:CDS | 25.0% |
| ! | ATGTTACGACGTTTAATATT+AGG | + | chr1_1:35550013-35550032 | Msa0020510:CDS | 25.0% |
| ! | TGTTACGACGTTTAATATTA+GGG | + | chr1_1:35550014-35550033 | Msa0020510:CDS | 25.0% |
| !! | ATCTTAGTATTGAACATATG+AGG | + | chr1_1:35550076-35550095 | Msa0020510:CDS | 25.0% |
| !!! | GGAGTTTGTTTTGAATAAAA+TGG | + | chr1_1:35550179-35550198 | Msa0020510:CDS | 25.0% |
| !!! | TGTTTTGAATAAAATGGATG+TGG | + | chr1_1:35550185-35550204 | Msa0020510:CDS | 25.0% |
| ! | ATCTTAAGAAACATTATAGG+AGG | + | chr1_1:35550346-35550365 | Msa0020510:CDS | 25.0% |
| ATGTTACACTACACACAAAA+TGG | + | chr1_1:35549403-35549422 | Msa0020510:CDS | 30.0% | |
| TGATATGATCAAATTTGCGT+TGG | - | chr1_1:35549528-35549547 | None:intergenic | 30.0% | |
| !! | TCATTGGCAATATCTTGTTT+TGG | + | chr1_1:35549607-35549626 | Msa0020510:CDS | 30.0% |
| !!! | ATATCTTGTTTTGGAAATGC+AGG | + | chr1_1:35549616-35549635 | Msa0020510:CDS | 30.0% |
| TGCAGGAAACTTAAAATTGA+TGG | + | chr1_1:35549633-35549652 | Msa0020510:CDS | 30.0% | |
| GGAAGAAACAATCAATGAAA+TGG | + | chr1_1:35549654-35549673 | Msa0020510:CDS | 30.0% | |
| AATGAAATGGAGAATGCTTA+TGG | + | chr1_1:35549751-35549770 | Msa0020510:CDS | 30.0% | |
| TGATTGAGGAAAATGTGATT+AGG | + | chr1_1:35549797-35549816 | Msa0020510:CDS | 30.0% | |
| GATTGAGGAAAATGTGATTA+GGG | + | chr1_1:35549798-35549817 | Msa0020510:CDS | 30.0% | |
| !! | TTTGTTAGAGATGTTGGTTT+AGG | + | chr1_1:35549871-35549890 | Msa0020510:CDS | 30.0% |
| ATATTAAACGTCGTAACATC+CGG | - | chr1_1:35550012-35550031 | None:intergenic | 30.0% | |
| AACAACAGAAATGGAGTTAT+AGG | + | chr1_1:35550307-35550326 | Msa0020510:CDS | 30.0% | |
| ACAACAGAAATGGAGTTATA+GGG | + | chr1_1:35550308-35550327 | Msa0020510:CDS | 30.0% | |
| ATGTTACACTACACACAAAA+TGG | + | chr1_1:35549403-35549422 | Msa0020510:CDS | 30.0% | |
| TGATATGATCAAATTTGCGT+TGG | - | chr1_1:35549528-35549547 | None:intergenic | 30.0% | |
| !! | TCATTGGCAATATCTTGTTT+TGG | + | chr1_1:35549607-35549626 | Msa0020510:CDS | 30.0% |
| !!! | ATATCTTGTTTTGGAAATGC+AGG | + | chr1_1:35549616-35549635 | Msa0020510:CDS | 30.0% |
| TGCAGGAAACTTAAAATTGA+TGG | + | chr1_1:35549633-35549652 | Msa0020510:CDS | 30.0% | |
| GGAAGAAACAATCAATGAAA+TGG | + | chr1_1:35549654-35549673 | Msa0020510:CDS | 30.0% | |
| AATGAAATGGAGAATGCTTA+TGG | + | chr1_1:35549751-35549770 | Msa0020510:CDS | 30.0% | |
| TGATTGAGGAAAATGTGATT+AGG | + | chr1_1:35549797-35549816 | Msa0020510:CDS | 30.0% | |
| GATTGAGGAAAATGTGATTA+GGG | + | chr1_1:35549798-35549817 | Msa0020510:CDS | 30.0% | |
| !! | TTTGTTAGAGATGTTGGTTT+AGG | + | chr1_1:35549871-35549890 | Msa0020510:CDS | 30.0% |
| ATATTAAACGTCGTAACATC+CGG | - | chr1_1:35550012-35550031 | None:intergenic | 30.0% | |
| AACAACAGAAATGGAGTTAT+AGG | + | chr1_1:35550307-35550326 | Msa0020510:CDS | 30.0% | |
| ACAACAGAAATGGAGTTATA+GGG | + | chr1_1:35550308-35550327 | Msa0020510:CDS | 30.0% | |
| ATTATGAGAAGAGAGGGAAA+TGG | - | chr1_1:35549200-35549219 | None:intergenic | 35.0% | |
| ATGATGTTACGAGAATGATG+GGG | - | chr1_1:35549277-35549296 | None:intergenic | 35.0% | |
| GATGATGTTACGAGAATGAT+GGG | - | chr1_1:35549278-35549297 | None:intergenic | 35.0% | |
| ! | TGATGATGTTACGAGAATGA+TGG | - | chr1_1:35549279-35549298 | None:intergenic | 35.0% |
| ! | GAATTGGGTTGCTGAAAAAT+TGG | - | chr1_1:35549313-35549332 | None:intergenic | 35.0% |
| GTGTAGTGTAACATCAATGA+AGG | - | chr1_1:35549397-35549416 | None:intergenic | 35.0% | |
| TTCATCAATCTCAAACCACA+TGG | + | chr1_1:35549431-35549450 | Msa0020510:CDS | 35.0% | |
| TCATCAATCTCAAACCACAT+GGG | + | chr1_1:35549432-35549451 | Msa0020510:CDS | 35.0% | |
| AAGGGTGAAATGAACTGTTT+AGG | - | chr1_1:35549465-35549484 | None:intergenic | 35.0% | |
| TGAGTAAAACTGAGGCAAAA+GGG | - | chr1_1:35549590-35549609 | None:intergenic | 35.0% | |
| ATGAGTAAAACTGAGGCAAA+AGG | - | chr1_1:35549591-35549610 | None:intergenic | 35.0% | |
| ! | TTTGCCTCAGTTTTACTCAT+TGG | + | chr1_1:35549591-35549610 | Msa0020510:CDS | 35.0% |
| ATTGCCAATGAGTAAAACTG+AGG | - | chr1_1:35549598-35549617 | None:intergenic | 35.0% | |
| AAATGGAGAATGCTTATGGA+AGG | + | chr1_1:35549755-35549774 | Msa0020510:CDS | 35.0% | |
| ATGGAAGGTTTAAGAGATCT+AGG | + | chr1_1:35549770-35549789 | Msa0020510:CDS | 35.0% | |
| !! | GAGATCTAGGTTTTTGATTG+AGG | + | chr1_1:35549783-35549802 | Msa0020510:CDS | 35.0% |
| !! | TTAGAGATGTTGGTTTAGGT+AGG | + | chr1_1:35549875-35549894 | Msa0020510:CDS | 35.0% |
| GTTTAGGTAGGAGAAATGTT+GGG | + | chr1_1:35549887-35549906 | Msa0020510:CDS | 35.0% | |
| ! | GAAATGTTGGGAATCTTTTG+TGG | + | chr1_1:35549899-35549918 | Msa0020510:CDS | 35.0% |
| TTTGTTAGGATGGTTGAATC+AGG | + | chr1_1:35549979-35549998 | Msa0020510:CDS | 35.0% | |
| TTGTTAGGATGGTTGAATCA+GGG | + | chr1_1:35549980-35549999 | Msa0020510:CDS | 35.0% | |
| GACGTTTAATATTAGGGCTA+TGG | + | chr1_1:35550020-35550039 | Msa0020510:CDS | 35.0% | |
| TGAACATATGAGGAGTGAAA+AGG | + | chr1_1:35550086-35550105 | Msa0020510:CDS | 35.0% | |
| TGAAAAGGTTGTTCCTGATT+TGG | + | chr1_1:35550101-35550120 | Msa0020510:CDS | 35.0% | |
| !! | GTTCCTGATTTGGTTACTTA+TGG | + | chr1_1:35550111-35550130 | Msa0020510:CDS | 35.0% |
| CAACCATAAGTAACCAAATC+AGG | - | chr1_1:35550117-35550136 | None:intergenic | 35.0% | |
| TAGAAAGCTTGGAAGGAATT+TGG | + | chr1_1:35550158-35550177 | Msa0020510:CDS | 35.0% | |
| AACGGATCTGTAAACAATCT+CGG | - | chr1_1:35550219-35550238 | None:intergenic | 35.0% | |
| CCTAAAACCTCAAACACAAA+CGG | - | chr1_1:35550237-35550256 | None:intergenic | 35.0% | |
| !!! | GTGTTTGAGGTTTTAGGTAA+AGG | + | chr1_1:35550240-35550259 | Msa0020510:CDS | 35.0% |
| ! | AGGTGACTTTCATTTGAGTT+CGG | + | chr1_1:35550260-35550279 | Msa0020510:CDS | 35.0% |
| ACAAGACACAACAACAGAAA+TGG | + | chr1_1:35550298-35550317 | Msa0020510:CDS | 35.0% | |
| ! | ATAGGAGGAACCAGATATTT+TGG | + | chr1_1:35550361-35550380 | Msa0020510:CDS | 35.0% |
| ATTATGAGAAGAGAGGGAAA+TGG | - | chr1_1:35549200-35549219 | None:intergenic | 35.0% | |
| ATGATGTTACGAGAATGATG+GGG | - | chr1_1:35549277-35549296 | None:intergenic | 35.0% | |
| GATGATGTTACGAGAATGAT+GGG | - | chr1_1:35549278-35549297 | None:intergenic | 35.0% | |
| ! | TGATGATGTTACGAGAATGA+TGG | - | chr1_1:35549279-35549298 | None:intergenic | 35.0% |
| ! | GAATTGGGTTGCTGAAAAAT+TGG | - | chr1_1:35549313-35549332 | None:intergenic | 35.0% |
| GTGTAGTGTAACATCAATGA+AGG | - | chr1_1:35549397-35549416 | None:intergenic | 35.0% | |
| TTCATCAATCTCAAACCACA+TGG | + | chr1_1:35549431-35549450 | Msa0020510:CDS | 35.0% | |
| TCATCAATCTCAAACCACAT+GGG | + | chr1_1:35549432-35549451 | Msa0020510:CDS | 35.0% | |
| AAGGGTGAAATGAACTGTTT+AGG | - | chr1_1:35549465-35549484 | None:intergenic | 35.0% | |
| TGAGTAAAACTGAGGCAAAA+GGG | - | chr1_1:35549590-35549609 | None:intergenic | 35.0% | |
| ATGAGTAAAACTGAGGCAAA+AGG | - | chr1_1:35549591-35549610 | None:intergenic | 35.0% | |
| ! | TTTGCCTCAGTTTTACTCAT+TGG | + | chr1_1:35549591-35549610 | Msa0020510:CDS | 35.0% |
| ATTGCCAATGAGTAAAACTG+AGG | - | chr1_1:35549598-35549617 | None:intergenic | 35.0% | |
| AAATGGAGAATGCTTATGGA+AGG | + | chr1_1:35549755-35549774 | Msa0020510:CDS | 35.0% | |
| ATGGAAGGTTTAAGAGATCT+AGG | + | chr1_1:35549770-35549789 | Msa0020510:CDS | 35.0% | |
| !! | GAGATCTAGGTTTTTGATTG+AGG | + | chr1_1:35549783-35549802 | Msa0020510:CDS | 35.0% |
| !! | TTAGAGATGTTGGTTTAGGT+AGG | + | chr1_1:35549875-35549894 | Msa0020510:CDS | 35.0% |
| GTTTAGGTAGGAGAAATGTT+GGG | + | chr1_1:35549887-35549906 | Msa0020510:CDS | 35.0% | |
| ! | GAAATGTTGGGAATCTTTTG+TGG | + | chr1_1:35549899-35549918 | Msa0020510:CDS | 35.0% |
| TTTGTTAGGATGGTTGAATC+AGG | + | chr1_1:35549979-35549998 | Msa0020510:CDS | 35.0% | |
| TTGTTAGGATGGTTGAATCA+GGG | + | chr1_1:35549980-35549999 | Msa0020510:CDS | 35.0% | |
| GACGTTTAATATTAGGGCTA+TGG | + | chr1_1:35550020-35550039 | Msa0020510:CDS | 35.0% | |
| TGAACATATGAGGAGTGAAA+AGG | + | chr1_1:35550086-35550105 | Msa0020510:CDS | 35.0% | |
| TGAAAAGGTTGTTCCTGATT+TGG | + | chr1_1:35550101-35550120 | Msa0020510:CDS | 35.0% | |
| !! | GTTCCTGATTTGGTTACTTA+TGG | + | chr1_1:35550111-35550130 | Msa0020510:CDS | 35.0% |
| CAACCATAAGTAACCAAATC+AGG | - | chr1_1:35550117-35550136 | None:intergenic | 35.0% | |
| TAGAAAGCTTGGAAGGAATT+TGG | + | chr1_1:35550158-35550177 | Msa0020510:CDS | 35.0% | |
| AACGGATCTGTAAACAATCT+CGG | - | chr1_1:35550219-35550238 | None:intergenic | 35.0% | |
| CCTAAAACCTCAAACACAAA+CGG | - | chr1_1:35550237-35550256 | None:intergenic | 35.0% | |
| !!! | GTGTTTGAGGTTTTAGGTAA+AGG | + | chr1_1:35550240-35550259 | Msa0020510:CDS | 35.0% |
| ! | AGGTGACTTTCATTTGAGTT+CGG | + | chr1_1:35550260-35550279 | Msa0020510:CDS | 35.0% |
| ACAAGACACAACAACAGAAA+TGG | + | chr1_1:35550298-35550317 | Msa0020510:CDS | 35.0% | |
| ! | ATAGGAGGAACCAGATATTT+TGG | + | chr1_1:35550361-35550380 | Msa0020510:CDS | 35.0% |
| TTGTGGTGAAGATGAAGATG+AGG | - | chr1_1:35549251-35549270 | None:intergenic | 40.0% | |
| GGAAAATGTGATTAGGGCTA+TGG | + | chr1_1:35549804-35549823 | Msa0020510:CDS | 40.0% | |
| !! | GGTGAGTTTGTTAGAGATGT+TGG | + | chr1_1:35549865-35549884 | Msa0020510:CDS | 40.0% |
| GGTTTAGGTAGGAGAAATGT+TGG | + | chr1_1:35549886-35549905 | Msa0020510:CDS | 40.0% | |
| GGTTACTTATGGTTGTGTTG+TGG | + | chr1_1:35550122-35550141 | Msa0020510:CDS | 40.0% | |
| TACTTATGGTTGTGTTGTGG+AGG | + | chr1_1:35550125-35550144 | Msa0020510:CDS | 40.0% | |
| GCTTACTTGGATAGAAAGCT+TGG | + | chr1_1:35550147-35550166 | Msa0020510:CDS | 40.0% | |
| ACTTGGATAGAAAGCTTGGA+AGG | + | chr1_1:35550151-35550170 | Msa0020510:CDS | 40.0% | |
| TACAGATCCGTTTGTGTTTG+AGG | + | chr1_1:35550227-35550246 | Msa0020510:CDS | 40.0% | |
| !! | CCGTTTGTGTTTGAGGTTTT+AGG | + | chr1_1:35550234-35550253 | Msa0020510:CDS | 40.0% |
| ! | TGACTTTCATTTGAGTTCGG+AGG | + | chr1_1:35550263-35550282 | Msa0020510:CDS | 40.0% |
| TTGTGGTGAAGATGAAGATG+AGG | - | chr1_1:35549251-35549270 | None:intergenic | 40.0% | |
| GGAAAATGTGATTAGGGCTA+TGG | + | chr1_1:35549804-35549823 | Msa0020510:CDS | 40.0% | |
| !! | GGTGAGTTTGTTAGAGATGT+TGG | + | chr1_1:35549865-35549884 | Msa0020510:CDS | 40.0% |
| GGTTTAGGTAGGAGAAATGT+TGG | + | chr1_1:35549886-35549905 | Msa0020510:CDS | 40.0% | |
| GGTTACTTATGGTTGTGTTG+TGG | + | chr1_1:35550122-35550141 | Msa0020510:CDS | 40.0% | |
| TACTTATGGTTGTGTTGTGG+AGG | + | chr1_1:35550125-35550144 | Msa0020510:CDS | 40.0% | |
| GCTTACTTGGATAGAAAGCT+TGG | + | chr1_1:35550147-35550166 | Msa0020510:CDS | 40.0% | |
| ACTTGGATAGAAAGCTTGGA+AGG | + | chr1_1:35550151-35550170 | Msa0020510:CDS | 40.0% | |
| TACAGATCCGTTTGTGTTTG+AGG | + | chr1_1:35550227-35550246 | Msa0020510:CDS | 40.0% | |
| !! | CCGTTTGTGTTTGAGGTTTT+AGG | + | chr1_1:35550234-35550253 | Msa0020510:CDS | 40.0% |
| ! | TGACTTTCATTTGAGTTCGG+AGG | + | chr1_1:35550263-35550282 | Msa0020510:CDS | 40.0% |
| ! | CGAGAATGATGGGGTATTTG+TGG | - | chr1_1:35549268-35549287 | None:intergenic | 45.0% |
| GTTTAGGAGTTGTTCCCATG+TGG | - | chr1_1:35549449-35549468 | None:intergenic | 45.0% | |
| GTGATTAGGGCTATGGCTTA+TGG | + | chr1_1:35549811-35549830 | Msa0020510:CDS | 45.0% | |
| ! | GCTTGCAGAGAGAGTTTGTT+AGG | + | chr1_1:35549965-35549984 | Msa0020510:CDS | 45.0% |
| !! | GCAGAGAGAGTTTGTTAGGA+TGG | + | chr1_1:35549969-35549988 | Msa0020510:CDS | 45.0% |
| ! | TTAGGGCTATGGCGTTTTTG+AGG | + | chr1_1:35550031-35550050 | Msa0020510:CDS | 45.0% |
| !! | TTTTGAGGATGGCGCTGTTT+TGG | + | chr1_1:35550046-35550065 | Msa0020510:CDS | 45.0% |
| !! | TTTGAGGATGGCGCTGTTTT+GGG | + | chr1_1:35550047-35550066 | Msa0020510:CDS | 45.0% |
| TTGTGTTGTGGAGGCTTACT+TGG | + | chr1_1:35550134-35550153 | Msa0020510:CDS | 45.0% | |
| !!! | TTTGAGTTCGGAGGCGTTTT+TGG | + | chr1_1:35550272-35550291 | Msa0020510:CDS | 45.0% |
| ! | CGAGAATGATGGGGTATTTG+TGG | - | chr1_1:35549268-35549287 | None:intergenic | 45.0% |
| GTTTAGGAGTTGTTCCCATG+TGG | - | chr1_1:35549449-35549468 | None:intergenic | 45.0% | |
| GTGATTAGGGCTATGGCTTA+TGG | + | chr1_1:35549811-35549830 | Msa0020510:CDS | 45.0% | |
| ! | GCTTGCAGAGAGAGTTTGTT+AGG | + | chr1_1:35549965-35549984 | Msa0020510:CDS | 45.0% |
| !! | GCAGAGAGAGTTTGTTAGGA+TGG | + | chr1_1:35549969-35549988 | Msa0020510:CDS | 45.0% |
| ! | TTAGGGCTATGGCGTTTTTG+AGG | + | chr1_1:35550031-35550050 | Msa0020510:CDS | 45.0% |
| !! | TTTTGAGGATGGCGCTGTTT+TGG | + | chr1_1:35550046-35550065 | Msa0020510:CDS | 45.0% |
| !! | TTTGAGGATGGCGCTGTTTT+GGG | + | chr1_1:35550047-35550066 | Msa0020510:CDS | 45.0% |
| TTGTGTTGTGGAGGCTTACT+TGG | + | chr1_1:35550134-35550153 | Msa0020510:CDS | 45.0% | |
| !!! | TTTGAGTTCGGAGGCGTTTT+TGG | + | chr1_1:35550272-35550291 | Msa0020510:CDS | 45.0% |
| GGTTGAATCAGGGTTTCGTC+CGG | + | chr1_1:35549990-35550009 | Msa0020510:CDS | 50.0% | |
| !! | GGCTATGGCGTTTTTGAGGA+TGG | + | chr1_1:35550035-35550054 | Msa0020510:CDS | 50.0% |
| GGTTGAATCAGGGTTTCGTC+CGG | + | chr1_1:35549990-35550009 | Msa0020510:CDS | 50.0% | |
| !! | GGCTATGGCGTTTTTGAGGA+TGG | + | chr1_1:35550035-35550054 | Msa0020510:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 35549190 | 35550392 | 35549190 | ID=Msa0020510;Name=Msa0020510 |
| chr1_1 | mRNA | 35549190 | 35550392 | 35549190 | ID=Msa0020510-mRNA-1;Parent=Msa0020510;Name=Msa0020510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|400 |
| chr1_1 | exon | 35549190 | 35550392 | 35549190 | ID=Msa0020510-mRNA-1:exon:11349;Parent=Msa0020510-mRNA-1 |
| chr1_1 | CDS | 35549190 | 35550392 | 35549190 | ID=Msa0020510-mRNA-1:cds;Parent=Msa0020510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
