AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647000 MtrunA17_Chr4g0035491 90.864 405 31 2 18 416 21 425 0.0 720
Msa0647000 MtrunA17_Chr4g0035511 94.286 140 8 0 408 547 39 178 5.45e-86 263
Msa0647000 MtrunA17_Chr7g0269501 63.380 142 51 1 401 541 33 174 5.88e-51 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647000 AT2G38780.1 54.570 372 155 7 50 416 84 446 2.49e-130 388
Msa0647000 AT2G38780.4 55.053 376 147 8 50 416 88 450 3.88e-130 388
Msa0647000 AT2G38780.6 51.646 395 154 8 50 416 88 473 1.97e-125 377
Msa0647000 AT2G38780.12 55.088 285 116 5 50 330 84 360 8.45e-99 304
Msa0647000 AT2G38780.5 55.709 289 108 6 50 330 88 364 1.43e-98 303
Msa0647000 AT2G38780.2 55.477 283 114 5 50 328 88 362 2.74e-98 303
Msa0647000 AT2G38780.3 52.453 265 114 5 50 310 88 344 2.78e-83 263
Msa0647000 AT2G38780.9 52.453 265 114 5 50 310 88 344 2.78e-83 263
Msa0647000 AT2G38780.11 52.453 265 114 5 50 310 88 344 2.78e-83 263
Msa0647000 AT2G38780.8 52.453 265 114 5 50 310 88 344 2.78e-83 263
Msa0647000 AT2G38780.7 52.453 265 114 5 50 310 88 344 2.78e-83 263
Msa0647000 AT2G38780.13 52.453 265 114 5 50 310 84 340 3.32e-83 263
Msa0647000 AT2G38780.10 52.453 265 114 5 50 310 88 344 6.61e-83 264
Msa0647000 AT4G02250.1 32.090 134 88 1 412 542 26 159 1.36e-14 72.0
Msa0647000 AT1G55770.1 35.052 97 60 1 449 542 79 175 2.01e-14 72.0

Find 113 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACATGTTTCGCTCTTTA+TGG 0.089370 4_3:-52972751 None:intergenic
TGAATTCCTGGGTCCAAATT+TGG 0.160047 4_3:-52977434 None:intergenic
ACAATTCATGTACAGCTTTC+AGG 0.201984 4_3:+52975602 Msa0647000:CDS
TTATTAAACGCAAGCTTTAT+AGG 0.218801 4_3:-52972976 None:intergenic
TACATTCTTGTTCATGTTCA+TGG 0.226253 4_3:+52972839 Msa0647000:CDS
CATTGCTGTTGCCGTTAATA+AGG 0.234346 4_3:+52977664 Msa0647000:CDS
GATGATCGACGATCCAAATT+TGG 0.256060 4_3:+52977421 Msa0647000:CDS
GCTGCTTACAAGAAGAAATA+TGG 0.267605 4_3:+52974372 Msa0647000:CDS
GAAGGATGGTGACTTCTTAA+TGG 0.279378 4_3:+52974740 Msa0647000:CDS
GCCAAACCTTGTTGAATTCC+TGG 0.321141 4_3:-52977446 None:intergenic
CGGTGCTGATGGAGGGAAAA+AGG 0.321282 4_3:+52973056 Msa0647000:CDS
ACACCCCATGTAGAAACTTT+TGG 0.326916 4_3:-52974123 None:intergenic
GATTAAATCAAACTCTGGTT+TGG 0.332351 4_3:+52973020 Msa0647000:CDS
CCTTGACCTGTTCAGTTTGG+AGG 0.348105 4_3:+52974267 Msa0647000:intron
GTCAATGACTTTCTCATAGT+AGG 0.348199 4_3:-52974790 None:intergenic
TTTAGAGAGTGAAGAAGAAA+AGG 0.358296 4_3:+52974317 Msa0647000:CDS
CCTGAGGTGGAGCTTATTAT+CGG 0.363802 4_3:+52974021 Msa0647000:CDS
TCATCATCCTTAGTCTGTTC+AGG 0.364395 4_3:-52974084 None:intergenic
TGATTGCAAGGAGACTTTAT+TGG 0.364633 4_3:+52977469 Msa0647000:CDS
TCTGAGAAGGAGTCTGAAAA+AGG 0.367037 4_3:-52973988 None:intergenic
TTGAGCCACTTCATCTTTAA+CGG 0.367047 4_3:-52976496 None:intergenic
ATTAAATCAAACTCTGGTTT+GGG 0.367973 4_3:+52973021 Msa0647000:CDS
CCAAACGTGATGCTCAATTA+TGG 0.371905 4_3:+52977540 Msa0647000:CDS
ATTATGGTTGCAAGCAGCTT+TGG 0.380601 4_3:+52977556 Msa0647000:CDS
CCCAGGAATTCAACAAGGTT+TGG 0.387218 4_3:+52977445 Msa0647000:CDS
TGAGCCACTTCATCTTTAAC+GGG 0.391252 4_3:-52976495 None:intergenic
TTCTTGCCTACTTTAACACT+TGG 0.395553 4_3:-52975573 None:intergenic
AAGGAGGGAGTGAGAGTACT+TGG 0.407449 4_3:+52973842 Msa0647000:CDS
AGAATTGTCTGTTTCAAAGA+TGG 0.414379 4_3:+52973903 Msa0647000:CDS
ATGTGTGTTGGTCCTTTCTT+CGG 0.414944 4_3:+52977301 Msa0647000:CDS
CATTGACAAATTACCCTTCA+AGG 0.416440 4_3:+52974806 Msa0647000:CDS
ATCTGTCATAGCCTTATTAA+CGG 0.417652 4_3:-52977675 None:intergenic
ATTTAGAAGTTTACCTTGAA+GGG 0.427228 4_3:-52974819 None:intergenic
TTTGAAATATTGTTAGGTCT+AGG 0.441867 4_3:-52974150 None:intergenic
ATAATATTTATAGGCATTGA+AGG 0.443328 4_3:+52974722 Msa0647000:intron
CCATAATTGAGCATCACGTT+TGG 0.443848 4_3:-52977540 None:intergenic
TCCTTAGTCTGTTCAGGCTG+TGG 0.450969 4_3:-52974078 None:intergenic
ATTGCGATCTTCACAGAAAC+CGG 0.455646 4_3:-52973084 None:intergenic
TGACAATAGTGTTGGTAAGA+AGG 0.457261 4_3:+52973879 Msa0647000:CDS
AATTTAGAAGTTTACCTTGA+AGG 0.460312 4_3:-52974820 None:intergenic
GGCTCACTTTGTCCGAAGAA+AGG 0.464221 4_3:-52977313 None:intergenic
AAGGGGATTGCCACCTGGAC+TGG 0.466766 4_3:+52973963 Msa0647000:CDS
TGACCTGTTCAGTTTGGAGG+TGG 0.468485 4_3:+52974270 Msa0647000:intron
TCAAGAAAGTGAAATCAATC+AGG 0.474812 4_3:+52976515 Msa0647000:CDS
CCAAACCTTGTTGAATTCCT+GGG 0.480592 4_3:-52977445 None:intergenic
TCCACAGCCTGAACAGACTA+AGG 0.482156 4_3:+52974077 Msa0647000:CDS
GACAATAGTGTTGGTAAGAA+GGG 0.482595 4_3:+52973880 Msa0647000:CDS
TCAATGACTTTCTCATAGTA+GGG 0.487497 4_3:-52974789 None:intergenic
GGTGGAAGAACTATACGTCC+TGG 0.503929 4_3:+52974288 Msa0647000:CDS
TAAAGAGCGAAACATGTTCA+TGG 0.506795 4_3:+52972754 Msa0647000:five_prime_UTR
ACCTGGCTATGATATCACTA+AGG 0.507932 4_3:+52977354 Msa0647000:CDS
ACAAGGTTTGGCTGATTGCA+AGG 0.508120 4_3:+52977457 Msa0647000:CDS
TCTGTTAGTGAAACTGATCA+AGG 0.516186 4_3:+52973144 Msa0647000:CDS
AGGAGGGAGTGAGAGTACTT+GGG 0.519057 4_3:+52973843 Msa0647000:CDS
TCTTGCCTACTTTAACACTT+GGG 0.521824 4_3:-52975572 None:intergenic
GAATCGATTAAATCAAACTC+TGG 0.521956 4_3:+52973015 Msa0647000:CDS
ATTGAGCAAAACGGTGCTGA+TGG 0.524701 4_3:+52973045 Msa0647000:CDS
TATTTATAGGCATTGAAGGA+TGG 0.534214 4_3:+52974726 Msa0647000:intron
AAAGTATAAGCAGAATAAAG+AGG 0.535033 4_3:+52973119 Msa0647000:CDS
ACAAGCCAAAAGTTTCTACA+TGG 0.538624 4_3:+52974118 Msa0647000:CDS
CCGATAATAAGCTCCACCTC+AGG 0.545209 4_3:-52974021 None:intergenic
TCTCACCCAAGTGTTAAAGT+AGG 0.553096 4_3:+52975567 Msa0647000:CDS
GTGGAAGAACTATACGTCCT+GGG 0.553555 4_3:+52974289 Msa0647000:CDS
TGGCCGCTTCAAACGCGACC+GGG 0.557203 4_3:+52977378 Msa0647000:CDS
GTGGCCGCTTCAAACGCGAC+CGG 0.557441 4_3:+52977377 Msa0647000:CDS
CTACCCCGTTAAAGATGAAG+TGG 0.559497 4_3:+52976491 Msa0647000:CDS
ACATGTGATGCTTCAATACC+TGG 0.560104 4_3:+52977590 Msa0647000:CDS
CCCTTAGTGATATCATAGCC+AGG 0.560549 4_3:-52977355 None:intergenic
TGTGAAGATCGCAATGGAGA+AGG 0.561367 4_3:+52973092 Msa0647000:CDS
TAAATGCATCAAAATAACTC+TGG 0.561561 4_3:-52976452 None:intergenic
GCAGGCTATGGAAATGATGA+AGG 0.561630 4_3:+52976389 Msa0647000:intron
CTGCCACAGTATCCTCAAGC+TGG 0.563269 4_3:-52977502 None:intergenic
AAGACAAGGGGATTGCCACC+TGG 0.574035 4_3:+52973958 Msa0647000:CDS
AGGCAAGTCATCGTCTGAGA+AGG 0.577048 4_3:-52974001 None:intergenic
AGACGATGACTTGCCTGAGG+TGG 0.579966 4_3:+52974008 Msa0647000:CDS
AATGGACGCGGGAAAACTGA+AGG 0.586192 4_3:+52974758 Msa0647000:CDS
AGCAAAACGGTGCTGATGGA+GGG 0.586859 4_3:+52973049 Msa0647000:CDS
GGAGGGAGTGAGAGTACTTG+GGG 0.587353 4_3:+52973844 Msa0647000:CDS
GAGCAAAACGGTGCTGATGG+AGG 0.587753 4_3:+52973048 Msa0647000:CDS
TGGTGACTTCTTAATGGACG+CGG 0.588889 4_3:+52974746 Msa0647000:CDS
TCACTCTCTAAAATCTCCCC+AGG 0.590984 4_3:-52974306 None:intergenic
TCGGACAATAAGAAGACAAG+GGG 0.602369 4_3:+52973946 Msa0647000:CDS
GACGATCCAAATTTGGACCC+AGG 0.607875 4_3:+52977428 Msa0647000:CDS
AATGTGAATGACAATAGTGT+TGG 0.608670 4_3:+52973871 Msa0647000:CDS
CTTTGCAAACATACCTACTG+AGG 0.611061 4_3:-52975158 None:intergenic
TTTGTCAAGACTCCCTCAGT+AGG 0.612816 4_3:+52975145 Msa0647000:CDS
TTTCACATCGGATAGTATCC+CGG 0.613806 4_3:-52977396 None:intergenic
CAAGCCAAAAGTTTCTACAT+GGG 0.621826 4_3:+52974119 Msa0647000:CDS
TATCCCGGTCGCGTTTGAAG+CGG 0.622386 4_3:-52977381 None:intergenic
CCTGGCTATGATATCACTAA+GGG 0.625300 4_3:+52977355 Msa0647000:CDS
TTTCGGACAATAAGAAGACA+AGG 0.625969 4_3:+52973944 Msa0647000:CDS
GGATGCAGAAAGCCAGCTTG+AGG 0.627877 4_3:+52977490 Msa0647000:CDS
CTCAGACGATGACTTGCCTG+AGG 0.631457 4_3:+52974005 Msa0647000:CDS
GGTTTGGGAATTGAGCAAAA+CGG 0.633600 4_3:+52973036 Msa0647000:CDS
GCCCTGCAGAGTGAGCTACA+TGG 0.636806 4_3:+52975099 Msa0647000:intron
GAGAGAACATCATCATCACC+AGG 0.641144 4_3:-52977608 None:intergenic
GGTGACTTCTTAATGGACGC+GGG 0.642391 4_3:+52974747 Msa0647000:CDS
ATGGATTAGCTGCTTTACAG+TGG 0.643271 4_3:+52975118 Msa0647000:CDS
GGCTATGATATCACTAAGGG+TGG 0.644684 4_3:+52977358 Msa0647000:CDS
TTGGACCCAGGAATTCAACA+AGG 0.653837 4_3:+52977440 Msa0647000:CDS
CGTTGCGCATGAAACCAACA+AGG 0.659063 4_3:+52972869 Msa0647000:CDS
TTCGGACAATAAGAAGACAA+GGG 0.664199 4_3:+52973945 Msa0647000:CDS
TGGAAGAACTATACGTCCTG+GGG 0.672309 4_3:+52974290 Msa0647000:CDS
AAGCCAAAAGTTTCTACATG+GGG 0.672588 4_3:+52974120 Msa0647000:CDS
ACAAGCGACTCTAAAAGACC+TGG 0.672920 4_3:+52977337 Msa0647000:CDS
TTTGCAAACATACCTACTGA+GGG 0.676039 4_3:-52975157 None:intergenic
TAACAAGGAACAATGTGTGT+TGG 0.683179 4_3:+52977289 Msa0647000:intron
GGTTTCTGTGAAGATCGCAA+TGG 0.683254 4_3:+52973086 Msa0647000:CDS
AAGCCAGCTTGAGGATACTG+TGG 0.683517 4_3:+52977499 Msa0647000:CDS
GAGCCACTTCATCTTTAACG+GGG 0.710162 4_3:-52976494 None:intergenic
AGAGCGAAACATGTTCATGG+TGG 0.717217 4_3:+52972757 Msa0647000:five_prime_UTR
TATGAACCAAGAAAACAACA+AGG 0.765280 4_3:+52972918 Msa0647000:CDS
TCATGGTGGTAAGTTCTGAG+TGG 0.772718 4_3:+52972771 Msa0647000:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATTTTTAATTAA+TGG + chr4_3:52972804-52972823 Msa0647000:exon 0.0%
!! GAATTGTATATAATATTTAT+AGG + chr4_3:52974713-52974732 Msa0647000:intron 10.0%
!! GAAAAATATTTATTTACAAA+TGG + chr4_3:52975987-52976006 Msa0647000:intron 10.0%
!!! AAAATTAGAGTATTAATTTA+GGG - chr4_3:52976989-52977008 None:intergenic 10.0%
!!! TAAAATTAGAGTATTAATTT+AGG - chr4_3:52976990-52977009 None:intergenic 10.0%
!! TCTATAGTATTATTAAATAG+CGG - chr4_3:52973456-52973475 None:intergenic 15.0%
!!! CTAAAAAATGCTTTAAAAAA+GGG - chr4_3:52974955-52974974 None:intergenic 15.0%
!! ATAAATATAAATAATCGGAT+AGG - chr4_3:52975340-52975359 None:intergenic 15.0%
!! TCATTACAAAATAAATGTAA+CGG + chr4_3:52975933-52975952 Msa0647000:intron 15.0%
!! TATTATTTGCAAAGTAAAAT+TGG - chr4_3:52976141-52976160 None:intergenic 15.0%
!!! TTTTACTTTGCAAATAATAA+TGG + chr4_3:52976142-52976161 Msa0647000:intron 15.0%
!!! AAACTATGAAATTTTTAGAA+AGG + chr4_3:52976167-52976186 Msa0647000:intron 15.0%
!! CATTAACAATTAAAAAGAAA+TGG - chr4_3:52976651-52976670 None:intergenic 15.0%
!! GATATTTATATGTATATAGT+AGG + chr4_3:52976756-52976775 Msa0647000:intron 15.0%
!!! TTTATTCTGCTTATACTTTT+TGG - chr4_3:52973118-52973137 None:intergenic 20.0%
!!! AATAAGACCATACTTATTTT+GGG - chr4_3:52973522-52973541 None:intergenic 20.0%
!!! TAATAAGACCATACTTATTT+TGG - chr4_3:52973523-52973542 None:intergenic 20.0%
!! TTATTATAAAACGAAGTCAT+TGG + chr4_3:52973561-52973580 Msa0647000:intron 20.0%
!!! TATAGACATTGATAATGAAA+AGG + chr4_3:52973757-52973776 Msa0647000:intron 20.0%
!!! AATTTATTTTTAGGATTGCA+AGG + chr4_3:52973823-52973842 Msa0647000:intron 20.0%
!!! ACTGTTTTTGAAATATTGTT+AGG - chr4_3:52974159-52974178 None:intergenic 20.0%
!! TTCATGAAATAAATCATGTT+GGG - chr4_3:52974696-52974715 None:intergenic 20.0%
!! ATTCATGAAATAAATCATGT+TGG - chr4_3:52974697-52974716 None:intergenic 20.0%
!!! ATAATATTTATAGGCATTGA+AGG + chr4_3:52974722-52974741 Msa0647000:intron 20.0%
!!! GCTAAAAAATGCTTTAAAAA+AGG - chr4_3:52974956-52974975 None:intergenic 20.0%
!! AAACTAGGAAAACATATATA+TGG + chr4_3:52975035-52975054 Msa0647000:intron 20.0%
!! TAGGTATAGATAATATAGTT+AGG - chr4_3:52975321-52975340 None:intergenic 20.0%
!! TCATCAAATCAAAATATGTT+TGG - chr4_3:52975503-52975522 None:intergenic 20.0%
!!! TCATCAAACTTTTTTATTTG+TGG + chr4_3:52975786-52975805 Msa0647000:intron 20.0%
!!! TACTTTTAACACTCTTTAAA+AGG - chr4_3:52976017-52976036 None:intergenic 20.0%
!!! TATGAAAGTATTGAATTCAA+AGG - chr4_3:52976078-52976097 None:intergenic 20.0%
!! ACAACTTAATAGATATGTAT+AGG + chr4_3:52976715-52976734 Msa0647000:intron 20.0%
!! TTATATGTATATAGTAGGAT+AGG + chr4_3:52976761-52976780 Msa0647000:intron 20.0%
!!! ATTCTAAAAAATACTTCATG+TGG + chr4_3:52976905-52976924 Msa0647000:intron 20.0%
!!! ACTCATTACTTTTCTATTTT+TGG - chr4_3:52976943-52976962 None:intergenic 20.0%
!! TTTGTTTATAAACTATTGTG+AGG - chr4_3:52977101-52977120 None:intergenic 20.0%
!! TTATTAAACGCAAGCTTTAT+AGG - chr4_3:52972979-52972998 None:intergenic 25.0%
!! ATTAAATCAAACTCTGGTTT+GGG + chr4_3:52973021-52973040 Msa0647000:CDS 25.0%
! AAAGTATAAGCAGAATAAAG+AGG + chr4_3:52973119-52973138 Msa0647000:CDS 25.0%
! AAGTGCTTAATTAATGTGTT+AGG + chr4_3:52973318-52973337 Msa0647000:intron 25.0%
! GCTTATAGAAAATATGCTTA+TGG + chr4_3:52973402-52973421 Msa0647000:intron 25.0%
! TAATCAAAGACATCAACTAA+TGG - chr4_3:52973606-52973625 None:intergenic 25.0%
!! TTTGAAATATTGTTAGGTCT+AGG - chr4_3:52974153-52974172 None:intergenic 25.0%
! GGTAAACATATCATATCTAT+TGG + chr4_3:52974434-52974453 Msa0647000:intron 25.0%
!! AAGGATGGTAAGAATATTTT+GGG - chr4_3:52974463-52974482 None:intergenic 25.0%
!! AAAGGATGGTAAGAATATTT+TGG - chr4_3:52974464-52974483 None:intergenic 25.0%
! TTGCAATATTTGTTTGCATA+TGG + chr4_3:52974514-52974533 Msa0647000:intron 25.0%
!!! TTCTTAACTTGTTGAAATGA+AGG + chr4_3:52974615-52974634 Msa0647000:intron 25.0%
! ATTTAGAAGTTTACCTTGAA+GGG - chr4_3:52974822-52974841 None:intergenic 25.0%
! AATTTAGAAGTTTACCTTGA+AGG - chr4_3:52974823-52974842 None:intergenic 25.0%
! ATTATGTACAAGATGTTTAG+AGG + chr4_3:52974840-52974859 Msa0647000:intron 25.0%
!! GGTGTTTTGCTTATTATTTA+TGG + chr4_3:52975447-52975466 Msa0647000:intron 25.0%
!!! ATTTTGATTTGATGATTGAC+AGG + chr4_3:52975508-52975527 Msa0647000:intron 25.0%
! AATATTCCACAGTAACATTA+TGG + chr4_3:52975709-52975728 Msa0647000:intron 25.0%
!! TTAATTTTACAGTGTAATGC+AGG - chr4_3:52975857-52975876 None:intergenic 25.0%
! ACAAGCTTTCATGTAAAAAA+TGG - chr4_3:52976101-52976120 None:intergenic 25.0%
! TGCAAAGTAAAATTGGATAA+TGG - chr4_3:52976134-52976153 None:intergenic 25.0%
! AGCAAAGAAAATCATTACTA+CGG - chr4_3:52976288-52976307 None:intergenic 25.0%
! TAAATGCATCAAAATAACTC+TGG - chr4_3:52976455-52976474 None:intergenic 25.0%
! AGAAGTAGTACAACAAAAAT+AGG - chr4_3:52976570-52976589 None:intergenic 25.0%
!! ATCTATTAAGTTGTTCAAAC+TGG - chr4_3:52976709-52976728 None:intergenic 25.0%
! TATGACATAAGATTGGAATT+TGG + chr4_3:52976785-52976804 Msa0647000:intron 25.0%
!!! TTCTATTTTTGGCTAAACTA+GGG - chr4_3:52976932-52976951 None:intergenic 25.0%
!!! TTTCTATTTTTGGCTAAACT+AGG - chr4_3:52976933-52976952 None:intergenic 25.0%
! AGGGTTAAATTGTTTGTAAT+TGG - chr4_3:52977067-52977086 None:intergenic 25.0%
! TCAACATAGAAGAAAAAGAA+TGG + chr4_3:52977157-52977176 Msa0647000:intron 25.0%
TACATTCTTGTTCATGTTCA+TGG + chr4_3:52972839-52972858 Msa0647000:CDS 30.0%
AACCAACAAGGTTAAAAACT+AGG + chr4_3:52972881-52972900 Msa0647000:CDS 30.0%
!! TTCCTAGTTTTTAACCTTGT+TGG - chr4_3:52972886-52972905 None:intergenic 30.0%
TATGAACCAAGAAAACAACA+AGG + chr4_3:52972918-52972937 Msa0647000:CDS 30.0%
!!! AAGATTCCTTGTTGTTTTCT+TGG - chr4_3:52972927-52972946 None:intergenic 30.0%
GAATCGATTAAATCAAACTC+TGG + chr4_3:52973015-52973034 Msa0647000:CDS 30.0%
GATTAAATCAAACTCTGGTT+TGG + chr4_3:52973020-52973039 Msa0647000:CDS 30.0%
! TAGCATAAGCAAAGTACTTA+TGG - chr4_3:52973297-52973316 None:intergenic 30.0%
TTAAGCACCCAAAATAAGTA+TGG + chr4_3:52973512-52973531 Msa0647000:intron 30.0%
!! AATGAAAAGGTGTGTACTTT+TGG + chr4_3:52973770-52973789 Msa0647000:intron 30.0%
!! GGGTGTCTGAATTTATTTTT+AGG + chr4_3:52973814-52973833 Msa0647000:intron 30.0%
!!! TTATTTTTAGGATTGCAAGG+AGG + chr4_3:52973826-52973845 Msa0647000:intron 30.0%
!!! TATTTTTAGGATTGCAAGGA+GGG + chr4_3:52973827-52973846 Msa0647000:intron 30.0%
AATGTGAATGACAATAGTGT+TGG + chr4_3:52973871-52973890 Msa0647000:CDS 30.0%
AGAATTGTCTGTTTCAAAGA+TGG + chr4_3:52973903-52973922 Msa0647000:CDS 30.0%
!! TGTTTCAAAGATGGATTTTG+TGG + chr4_3:52973912-52973931 Msa0647000:CDS 30.0%
!! GTTTCAAAGATGGATTTTGT+GGG + chr4_3:52973913-52973932 Msa0647000:CDS 30.0%
!! TTTCAAAGATGGATTTTGTG+GGG + chr4_3:52973914-52973933 Msa0647000:CDS 30.0%
!!! GTTTTTTCTGCAAGAAGATT+TGG - chr4_3:52974198-52974217 None:intergenic 30.0%
AAGGAAAGGGTAAATTTGAA+AGG - chr4_3:52974247-52974266 None:intergenic 30.0%
TTTAGAGAGTGAAGAAGAAA+AGG + chr4_3:52974317-52974336 Msa0647000:CDS 30.0%
GAAAAAACACGCTAAAAAGA+AGG - chr4_3:52974487-52974506 None:intergenic 30.0%
ATGTAGTGTATCATTAGCAA+TGG + chr4_3:52974582-52974601 Msa0647000:intron 30.0%
!! TATTTATAGGCATTGAAGGA+TGG + chr4_3:52974726-52974745 Msa0647000:intron 30.0%
TCAATGACTTTCTCATAGTA+GGG - chr4_3:52974792-52974811 None:intergenic 30.0%
CCAACTAATACAAACCAAAA+GGG + chr4_3:52974918-52974937 Msa0647000:intron 30.0%
CTAGGAAAACATATATATGG+AGG + chr4_3:52975038-52975057 Msa0647000:intron 30.0%
CATATATATGGAGGATTTAG+AGG + chr4_3:52975047-52975066 Msa0647000:intron 30.0%
AGTCTATGTAGAACATAACA+TGG - chr4_3:52975217-52975236 None:intergenic 30.0%
CATTGAACTCAATAAAGACA+GGG - chr4_3:52975657-52975676 None:intergenic 30.0%
TCATTGAACTCAATAAAGAC+AGG - chr4_3:52975658-52975677 None:intergenic 30.0%
TGATGAGTATATGCACTAAT+AGG - chr4_3:52975772-52975791 None:intergenic 30.0%
ACAAAGCTAGATCGAAATAT+AGG - chr4_3:52976222-52976241 None:intergenic 30.0%
TGAAACAAAGTTTAAGCACA+AGG - chr4_3:52976263-52976282 None:intergenic 30.0%
TCAAGAAAGTGAAATCAATC+AGG + chr4_3:52976515-52976534 Msa0647000:CDS 30.0%
ATTGTTAATGATCAAGTCCT+TGG + chr4_3:52976661-52976680 Msa0647000:intron 30.0%
GATAGGATATGACATAAGAT+TGG + chr4_3:52976778-52976797 Msa0647000:intron 30.0%
ACATAAGATTGGAATTTGGA+TGG + chr4_3:52976789-52976808 Msa0647000:intron 30.0%
GTAACCATCCAATAAAATTG+AGG + chr4_3:52977027-52977046 Msa0647000:intron 30.0%
! TTGACCTCAATTTTATTGGA+TGG - chr4_3:52977034-52977053 None:intergenic 30.0%
CACAAAATACTTATCTCTCT+TGG + chr4_3:52977184-52977203 Msa0647000:intron 30.0%
! CTTGGTGGTTTAATAAAATG+AGG - chr4_3:52977217-52977236 None:intergenic 30.0%
! TGCACATACTTTGTTGATTA+GGG - chr4_3:52977261-52977280 None:intergenic 30.0%
! TTGCACATACTTTGTTGATT+AGG - chr4_3:52977262-52977281 None:intergenic 30.0%
!! ATCTGTCATAGCCTTATTAA+CGG - chr4_3:52977678-52977697 None:intergenic 30.0%
TAAAGAGCGAAACATGTTCA+TGG + chr4_3:52972754-52972773 Msa0647000:five_prime_UTR 35.0%
TCTGTTAGTGAAACTGATCA+AGG + chr4_3:52973144-52973163 Msa0647000:CDS 35.0%
! TTGCTTCACCTATTTTGCAT+CGG + chr4_3:52973363-52973382 Msa0647000:intron 35.0%
TATAAGCACCCAATTATCTC+CGG - chr4_3:52973389-52973408 None:intergenic 35.0%
CCACAAATAGTGAAGAGATA+GGG - chr4_3:52973433-52973452 None:intergenic 35.0%
!!! TTATTTTGGGTGCTTAAGTG+GGG - chr4_3:52973509-52973528 None:intergenic 35.0%
!!! CTTATTTTGGGTGCTTAAGT+GGG - chr4_3:52973510-52973529 None:intergenic 35.0%
!!! ACTTATTTTGGGTGCTTAAG+TGG - chr4_3:52973511-52973530 None:intergenic 35.0%
TGTATCTTTGGCTACAATTG+AGG - chr4_3:52973692-52973711 None:intergenic 35.0%
TGTAGCCAAAGATACAACAA+TGG + chr4_3:52973696-52973715 Msa0647000:intron 35.0%
TTAGGCCATTGTTGTATCTT+TGG - chr4_3:52973704-52973723 None:intergenic 35.0%
!! TGACAATAGTGTTGGTAAGA+AGG + chr4_3:52973879-52973898 Msa0647000:CDS 35.0%
!! GACAATAGTGTTGGTAAGAA+GGG + chr4_3:52973880-52973899 Msa0647000:CDS 35.0%
TTTCGGACAATAAGAAGACA+AGG + chr4_3:52973944-52973963 Msa0647000:CDS 35.0%
TTCGGACAATAAGAAGACAA+GGG + chr4_3:52973945-52973964 Msa0647000:CDS 35.0%
ACAAGCCAAAAGTTTCTACA+TGG + chr4_3:52974118-52974137 Msa0647000:CDS 35.0%
CAAGCCAAAAGTTTCTACAT+GGG + chr4_3:52974119-52974138 Msa0647000:CDS 35.0%
AAGCCAAAAGTTTCTACATG+GGG + chr4_3:52974120-52974139 Msa0647000:CDS 35.0%
CACAAACAATTGGACTATCT+AGG - chr4_3:52974220-52974239 None:intergenic 35.0%
!! GAAAGGCATTCACAAACAAT+TGG - chr4_3:52974230-52974249 None:intergenic 35.0%
GCTGCTTACAAGAAGAAATA+TGG + chr4_3:52974372-52974391 Msa0647000:CDS 35.0%
!!! TCGCATTCGATTTTTAGCTT+TGG - chr4_3:52974411-52974430 None:intergenic 35.0%
AAAGCTAAAAATCGAATGCG+AGG + chr4_3:52974410-52974429 Msa0647000:CDS 35.0%
AACACGCTAAAAAGAAGGAA+AGG - chr4_3:52974482-52974501 None:intergenic 35.0%
!! TTGAAATGAAGGCATTCACT+TGG + chr4_3:52974626-52974645 Msa0647000:intron 35.0%
GTCAATGACTTTCTCATAGT+AGG - chr4_3:52974793-52974812 None:intergenic 35.0%
CATTGACAAATTACCCTTCA+AGG + chr4_3:52974806-52974825 Msa0647000:CDS 35.0%
ATGTACAAGATGTTTAGAGG+TGG + chr4_3:52974843-52974862 Msa0647000:intron 35.0%
TGTACAAGATGTTTAGAGGT+GGG + chr4_3:52974844-52974863 Msa0647000:intron 35.0%
GCATTCAGAGAGATGATATT+AGG - chr4_3:52974899-52974918 None:intergenic 35.0%
GCCAACTAATACAAACCAAA+AGG + chr4_3:52974917-52974936 Msa0647000:intron 35.0%
!!! CCCTTTTGGTTTGTATTAGT+TGG - chr4_3:52974921-52974940 None:intergenic 35.0%
TCATGACATATACTCTAGCA+GGG + chr4_3:52975012-52975031 Msa0647000:intron 35.0%
TTTGCAAACATACCTACTGA+GGG - chr4_3:52975160-52975179 None:intergenic 35.0%
AACCTTGCATATGCATATTG+GGG - chr4_3:52975248-52975267 None:intergenic 35.0%
CAACCTTGCATATGCATATT+GGG - chr4_3:52975249-52975268 None:intergenic 35.0%
ACAACCTTGCATATGCATAT+TGG - chr4_3:52975250-52975269 None:intergenic 35.0%
!! CAAGGTTGTTATTTCAGACT+GGG + chr4_3:52975261-52975280 Msa0647000:intron 35.0%
!! AAGGTTGTTATTTCAGACTG+GGG + chr4_3:52975262-52975281 Msa0647000:intron 35.0%
AGTTAGGTTTCAGCAAAGAA+AGG - chr4_3:52975305-52975324 None:intergenic 35.0%
TTAGTGAACGAAGTCATAGA+TGG - chr4_3:52975397-52975416 None:intergenic 35.0%
TCTTGCCTACTTTAACACTT+GGG - chr4_3:52975575-52975594 None:intergenic 35.0%
TTCTTGCCTACTTTAACACT+TGG - chr4_3:52975576-52975595 None:intergenic 35.0%
ACAATTCATGTACAGCTTTC+AGG + chr4_3:52975602-52975621 Msa0647000:CDS 35.0%
AACTCAATAAAGACAGGGTA+AGG - chr4_3:52975652-52975671 None:intergenic 35.0%
ATCTCACCATAATGTTACTG+TGG - chr4_3:52975718-52975737 None:intergenic 35.0%
ACATTATGGTGAGATGTGAT+TGG + chr4_3:52975723-52975742 Msa0647000:intron 35.0%
GCTTATATATGAACTCTTGC+AGG + chr4_3:52976371-52976390 Msa0647000:intron 35.0%
TTGAGCCACTTCATCTTTAA+CGG - chr4_3:52976499-52976518 None:intergenic 35.0%
TTCAATCTCTTTGTGTTCCA+AGG - chr4_3:52976681-52976700 None:intergenic 35.0%
!!! TCAACCCTTTTGCCATTTTT+AGG + chr4_3:52976838-52976857 Msa0647000:intron 35.0%
CCTTCCTAAAAATGGCAAAA+GGG - chr4_3:52976845-52976864 None:intergenic 35.0%
!!! CCTTTTGCCATTTTTAGGAA+GGG + chr4_3:52976843-52976862 Msa0647000:intron 35.0%
!! TTTTAGAAGCAACAAGCAAG+TGG + chr4_3:52977005-52977024 Msa0647000:intron 35.0%
TTGTGAGGAAACTTAGTAGA+GGG - chr4_3:52977086-52977105 None:intergenic 35.0%
ATTGTGAGGAAACTTAGTAG+AGG - chr4_3:52977087-52977106 None:intergenic 35.0%
! GCACATACTTTGTTGATTAG+GGG - chr4_3:52977260-52977279 None:intergenic 35.0%
AACACACATTGTTCCTTGTT+AGG - chr4_3:52977290-52977309 None:intergenic 35.0%
TAACAAGGAACAATGTGTGT+TGG + chr4_3:52977289-52977308 Msa0647000:intron 35.0%
TGATTGCAAGGAGACTTTAT+TGG + chr4_3:52977469-52977488 Msa0647000:CDS 35.0%
GGTTTGGGAATTGAGCAAAA+CGG + chr4_3:52973036-52973055 Msa0647000:CDS 40.0%
ATTGCGATCTTCACAGAAAC+CGG - chr4_3:52973087-52973106 None:intergenic 40.0%
CCCTATCTCTTCACTATTTG+TGG + chr4_3:52973430-52973449 Msa0647000:intron 40.0%
GCCACAAATAGTGAAGAGAT+AGG - chr4_3:52973434-52973453 None:intergenic 40.0%
AGTGTTAGATGATGTCTACG+AGG + chr4_3:52973630-52973649 Msa0647000:intron 40.0%
CACAATCGTGGTAGCAATTT+AGG - chr4_3:52973722-52973741 None:intergenic 40.0%
CTAAATTGCTACCACGATTG+TGG + chr4_3:52973720-52973739 Msa0647000:intron 40.0%
TCGGACAATAAGAAGACAAG+GGG + chr4_3:52973946-52973965 Msa0647000:CDS 40.0%
TCTGAGAAGGAGTCTGAAAA+AGG - chr4_3:52973991-52974010 None:intergenic 40.0%
TCATCATCCTTAGTCTGTTC+AGG - chr4_3:52974087-52974106 None:intergenic 40.0%
! ACACCCCATGTAGAAACTTT+TGG - chr4_3:52974126-52974145 None:intergenic 40.0%
CGCTAAAAAGAAGGAAAGGA+TGG - chr4_3:52974478-52974497 None:intergenic 40.0%
GAAGGATGGTGACTTCTTAA+TGG + chr4_3:52974740-52974759 Msa0647000:CDS 40.0%
GTACAAGATGTTTAGAGGTG+GGG + chr4_3:52974845-52974864 Msa0647000:intron 40.0%
TACAAGATGTTTAGAGGTGG+GGG + chr4_3:52974846-52974865 Msa0647000:intron 40.0%
! GGGCAAACAAAATACCCTTT+TGG - chr4_3:52974935-52974954 None:intergenic 40.0%
GTCATGACATATACTCTAGC+AGG + chr4_3:52975011-52975030 Msa0647000:intron 40.0%
TATACTCTAGCAGGGAAACT+AGG + chr4_3:52975020-52975039 Msa0647000:intron 40.0%
!! ATGGATTAGCTGCTTTACAG+TGG + chr4_3:52975118-52975137 Msa0647000:CDS 40.0%
CTTTGCAAACATACCTACTG+AGG - chr4_3:52975161-52975180 None:intergenic 40.0%
!! GCAAGGTTGTTATTTCAGAC+TGG + chr4_3:52975260-52975279 Msa0647000:intron 40.0%
!! TTGTTATTTCAGACTGGGGA+CGG + chr4_3:52975266-52975285 Msa0647000:intron 40.0%
CCTATACTTCCAAGTCAAAG+AGG - chr4_3:52975429-52975448 None:intergenic 40.0%
!! CCTCTTTGACTTGGAAGTAT+AGG + chr4_3:52975426-52975445 Msa0647000:intron 40.0%
TCTCACCCAAGTGTTAAAGT+AGG + chr4_3:52975567-52975586 Msa0647000:CDS 40.0%
ATATGAACTCTTGCAGGCTA+TGG + chr4_3:52976377-52976396 Msa0647000:intron 40.0%
TGAGCCACTTCATCTTTAAC+GGG - chr4_3:52976498-52976517 None:intergenic 40.0%
!!! CCCTTTTGCCATTTTTAGGA+AGG + chr4_3:52976842-52976861 Msa0647000:intron 40.0%
CCCTTCCTAAAAATGGCAAA+AGG - chr4_3:52976846-52976865 None:intergenic 40.0%
! GCGCTTGACCTCAATTTTAT+TGG - chr4_3:52977038-52977057 None:intergenic 40.0%
! TGACTTGTGCAAAGGTAACT+TGG - chr4_3:52977235-52977254 None:intergenic 40.0%
ATGTGCAAACTTGCCTAACA+AGG + chr4_3:52977274-52977293 Msa0647000:intron 40.0%
! ATGTGTGTTGGTCCTTTCTT+CGG + chr4_3:52977301-52977320 Msa0647000:CDS 40.0%
ACCTGGCTATGATATCACTA+AGG + chr4_3:52977354-52977373 Msa0647000:CDS 40.0%
CCTGGCTATGATATCACTAA+GGG + chr4_3:52977355-52977374 Msa0647000:CDS 40.0%
TTTCACATCGGATAGTATCC+CGG - chr4_3:52977399-52977418 None:intergenic 40.0%
! GTCGATCATCGTTTTCACAT+CGG - chr4_3:52977411-52977430 None:intergenic 40.0%
GATGATCGACGATCCAAATT+TGG + chr4_3:52977421-52977440 Msa0647000:CDS 40.0%
TGAATTCCTGGGTCCAAATT+TGG - chr4_3:52977437-52977456 None:intergenic 40.0%
CCAAACCTTGTTGAATTCCT+GGG - chr4_3:52977448-52977467 None:intergenic 40.0%
CCATAATTGAGCATCACGTT+TGG - chr4_3:52977543-52977562 None:intergenic 40.0%
CCAAACGTGATGCTCAATTA+TGG + chr4_3:52977540-52977559 Msa0647000:CDS 40.0%
ATTATGGTTGCAAGCAGCTT+TGG + chr4_3:52977556-52977575 Msa0647000:CDS 40.0%
ACATGTGATGCTTCAATACC+TGG + chr4_3:52977590-52977609 Msa0647000:CDS 40.0%
! CATTGCTGTTGCCGTTAATA+AGG + chr4_3:52977664-52977683 Msa0647000:CDS 40.0%
AGAGCGAAACATGTTCATGG+TGG + chr4_3:52972757-52972776 Msa0647000:five_prime_UTR 45.0%
!! TCATGGTGGTAAGTTCTGAG+TGG + chr4_3:52972771-52972790 Msa0647000:five_prime_UTR 45.0%
! ATTGAGCAAAACGGTGCTGA+TGG + chr4_3:52973045-52973064 Msa0647000:CDS 45.0%
TGGAGGGAAAAAGGATTTGC+CGG + chr4_3:52973065-52973084 Msa0647000:CDS 45.0%
GGTTTCTGTGAAGATCGCAA+TGG + chr4_3:52973086-52973105 Msa0647000:CDS 45.0%
TGTGAAGATCGCAATGGAGA+AGG + chr4_3:52973092-52973111 Msa0647000:CDS 45.0%
!! TTCACCTATTTTGCATCGGC+CGG + chr4_3:52973367-52973386 Msa0647000:intron 45.0%
CGCATCAATCGAAGTTATCG+AGG - chr4_3:52973668-52973687 None:intergenic 45.0%
ATAAAGCGCAACCACAATCG+TGG - chr4_3:52973734-52973753 None:intergenic 45.0%
! GGTGTGTACTTTTGGTCATG+CGG + chr4_3:52973778-52973797 Msa0647000:intron 45.0%
TCATGCGGTTCGTGCTAAAA+TGG + chr4_3:52973793-52973812 Msa0647000:intron 45.0%
CATGCGGTTCGTGCTAAAAT+GGG + chr4_3:52973794-52973813 Msa0647000:intron 45.0%
!! AAGATGGATTTTGTGGGGCT+TGG + chr4_3:52973919-52973938 Msa0647000:CDS 45.0%
!! TTTTGTGGGGCTTGGCTTTT+CGG + chr4_3:52973927-52973946 Msa0647000:CDS 45.0%
TCTGAAAAAGGAACCAGTCC+AGG - chr4_3:52973979-52973998 None:intergenic 45.0%
CCTGAGGTGGAGCTTATTAT+CGG + chr4_3:52974021-52974040 Msa0647000:CDS 45.0%
GAACAGGTCAAGGAAGGAAA+GGG - chr4_3:52974260-52974279 None:intergenic 45.0%
TGAACAGGTCAAGGAAGGAA+AGG - chr4_3:52974261-52974280 None:intergenic 45.0%
CAAACTGAACAGGTCAAGGA+AGG - chr4_3:52974266-52974285 None:intergenic 45.0%
CTTCCTTGACCTGTTCAGTT+TGG + chr4_3:52974264-52974283 Msa0647000:intron 45.0%
GTGGAAGAACTATACGTCCT+GGG + chr4_3:52974289-52974308 Msa0647000:CDS 45.0%
TGGAAGAACTATACGTCCTG+GGG + chr4_3:52974290-52974309 Msa0647000:CDS 45.0%
!! TCACTCTCTAAAATCTCCCC+AGG - chr4_3:52974309-52974328 None:intergenic 45.0%
GCTAAAAATCGAATGCGAGG+AGG + chr4_3:52974413-52974432 Msa0647000:CDS 45.0%
! TGGTGACTTCTTAATGGACG+CGG + chr4_3:52974746-52974765 Msa0647000:CDS 45.0%
TTTGTCAAGACTCCCTCAGT+AGG + chr4_3:52975145-52975164 Msa0647000:CDS 45.0%
CTCCCCAATATGCATATGCA+AGG + chr4_3:52975243-52975262 Msa0647000:intron 45.0%
!! TGTTATTTCAGACTGGGGAC+GGG + chr4_3:52975267-52975286 Msa0647000:intron 45.0%
CTACCATAGCCTCTTTGACT+TGG + chr4_3:52975417-52975436 Msa0647000:intron 45.0%
CTTCCAAGTCAAAGAGGCTA+TGG - chr4_3:52975423-52975442 None:intergenic 45.0%
GCAGGCTATGGAAATGATGA+AGG + chr4_3:52976389-52976408 Msa0647000:intron 45.0%
CTACCCCGTTAAAGATGAAG+TGG + chr4_3:52976491-52976510 Msa0647000:CDS 45.0%
GAGCCACTTCATCTTTAACG+GGG - chr4_3:52976497-52976516 None:intergenic 45.0%
!!! TGCCATTTTTAGGAAGGGAG+AGG + chr4_3:52976848-52976867 Msa0647000:intron 45.0%
GACCTCTCCCTTCCTAAAAA+TGG - chr4_3:52976853-52976872 None:intergenic 45.0%
TAGGAAGGGAGAGGTCATAT+AGG + chr4_3:52976857-52976876 Msa0647000:intron 45.0%
CTTGTGCAAAGGTAACTTGG+TGG - chr4_3:52977232-52977251 None:intergenic 45.0%
!! TAGGGGATTGACTTGTGCAA+AGG - chr4_3:52977243-52977262 None:intergenic 45.0%
!!! GGTCTTTTAGAGTCGCTTGT+TGG - chr4_3:52977337-52977356 None:intergenic 45.0%
! ACAAGCGACTCTAAAAGACC+TGG + chr4_3:52977337-52977356 Msa0647000:CDS 45.0%
CCCTTAGTGATATCATAGCC+AGG - chr4_3:52977358-52977377 None:intergenic 45.0%
GGCTATGATATCACTAAGGG+TGG + chr4_3:52977358-52977377 Msa0647000:CDS 45.0%
TTGGACCCAGGAATTCAACA+AGG + chr4_3:52977440-52977459 Msa0647000:CDS 45.0%
CCCAGGAATTCAACAAGGTT+TGG + chr4_3:52977445-52977464 Msa0647000:CDS 45.0%
GCCAAACCTTGTTGAATTCC+TGG - chr4_3:52977449-52977468 None:intergenic 45.0%
ACAAGGTTTGGCTGATTGCA+AGG + chr4_3:52977457-52977476 Msa0647000:CDS 45.0%
GAGAGAACATCATCATCACC+AGG - chr4_3:52977611-52977630 None:intergenic 45.0%
!! TAAGAATAAATATAAATAAT+CGG - chr4_3:52975345-52975364 None:intergenic 5.0%
!!! ATATTAAATCAAAATATTTT+TGG + chr4_3:52975888-52975907 Msa0647000:intron 5.0%
CGTTGCGCATGAAACCAACA+AGG + chr4_3:52972869-52972888 Msa0647000:CDS 50.0%
!! AGCAAAACGGTGCTGATGGA+GGG + chr4_3:52973049-52973068 Msa0647000:CDS 50.0%
ATCTCCGGCCGATGCAAAAT+AGG - chr4_3:52973374-52973393 None:intergenic 50.0%
! TTGCATCGGCCGGAGATAAT+TGG + chr4_3:52973377-52973396 Msa0647000:intron 50.0%
! TGCATCGGCCGGAGATAATT+GGG + chr4_3:52973378-52973397 Msa0647000:intron 50.0%
!! AAGGAGGGAGTGAGAGTACT+TGG + chr4_3:52973842-52973861 Msa0647000:CDS 50.0%
!! AGGAGGGAGTGAGAGTACTT+GGG + chr4_3:52973843-52973862 Msa0647000:CDS 50.0%
GAAAAAGGAACCAGTCCAGG+TGG - chr4_3:52973976-52973995 None:intergenic 50.0%
AGGCAAGTCATCGTCTGAGA+AGG - chr4_3:52974004-52974023 None:intergenic 50.0%
CCGATAATAAGCTCCACCTC+AGG - chr4_3:52974024-52974043 None:intergenic 50.0%
TCCACAGCCTGAACAGACTA+AGG + chr4_3:52974077-52974096 Msa0647000:CDS 50.0%
TCCTTAGTCTGTTCAGGCTG+TGG - chr4_3:52974081-52974100 None:intergenic 50.0%
CCTCCAAACTGAACAGGTCA+AGG - chr4_3:52974270-52974289 None:intergenic 50.0%
CCTTGACCTGTTCAGTTTGG+AGG + chr4_3:52974267-52974286 Msa0647000:intron 50.0%
TGACCTGTTCAGTTTGGAGG+TGG + chr4_3:52974270-52974289 Msa0647000:intron 50.0%
CTTCCACCTCCAAACTGAAC+AGG - chr4_3:52974276-52974295 None:intergenic 50.0%
GGTGGAAGAACTATACGTCC+TGG + chr4_3:52974288-52974307 Msa0647000:CDS 50.0%
! GGTGACTTCTTAATGGACGC+GGG + chr4_3:52974747-52974766 Msa0647000:CDS 50.0%
AATGGACGCGGGAAAACTGA+AGG + chr4_3:52974758-52974777 Msa0647000:CDS 50.0%
TCCATGTAGCTCACTCTGCA+GGG - chr4_3:52975103-52975122 None:intergenic 50.0%
ATCCATGTAGCTCACTCTGC+AGG - chr4_3:52975104-52975123 None:intergenic 50.0%
! GTTATTTCAGACTGGGGACG+GGG + chr4_3:52975268-52975287 Msa0647000:intron 50.0%
TTATTTCAGACTGGGGACGG+GGG + chr4_3:52975269-52975288 Msa0647000:intron 50.0%
GGCTCACTTTGTCCGAAGAA+AGG - chr4_3:52977316-52977335 None:intergenic 50.0%
GACGATCCAAATTTGGACCC+AGG + chr4_3:52977428-52977447 Msa0647000:CDS 50.0%
AAGCCAGCTTGAGGATACTG+TGG + chr4_3:52977499-52977518 Msa0647000:CDS 50.0%
!! GAGCAAAACGGTGCTGATGG+AGG + chr4_3:52973048-52973067 Msa0647000:CDS 55.0%
!! CGGTGCTGATGGAGGGAAAA+AGG + chr4_3:52973056-52973075 Msa0647000:CDS 55.0%
!! GGAGGGAGTGAGAGTACTTG+GGG + chr4_3:52973844-52973863 Msa0647000:CDS 55.0%
AAGACAAGGGGATTGCCACC+TGG + chr4_3:52973958-52973977 Msa0647000:CDS 55.0%
! CTCAGACGATGACTTGCCTG+AGG + chr4_3:52974005-52974024 Msa0647000:CDS 55.0%
! AGACGATGACTTGCCTGAGG+TGG + chr4_3:52974008-52974027 Msa0647000:CDS 55.0%
TATCCCGGTCGCGTTTGAAG+CGG - chr4_3:52977384-52977403 None:intergenic 55.0%
GGATGCAGAAAGCCAGCTTG+AGG + chr4_3:52977490-52977509 Msa0647000:CDS 55.0%
CTGCCACAGTATCCTCAAGC+TGG - chr4_3:52977505-52977524 None:intergenic 55.0%
AAGGGGATTGCCACCTGGAC+TGG + chr4_3:52973963-52973982 Msa0647000:CDS 60.0%
GCCCTGCAGAGTGAGCTACA+TGG + chr4_3:52975099-52975118 Msa0647000:intron 60.0%
GTGGCCGCTTCAAACGCGAC+CGG + chr4_3:52977377-52977396 Msa0647000:CDS 65.0%
TGGCCGCTTCAAACGCGACC+GGG + chr4_3:52977378-52977397 Msa0647000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52972754 52977712 52972754 ID=Msa0647000;Name=Msa0647000
chr4_3 mRNA 52972754 52977712 52972754 ID=Msa0647000-mRNA-1;Parent=Msa0647000;Name=Msa0647000-mRNA-1;_AED=0.14;_eAED=0.14;_QI=69|0.85|0.75|1|1|1|8|0|547
chr4_3 exon 52972754 52973165 52972754 ID=Msa0647000-mRNA-1:exon:13085;Parent=Msa0647000-mRNA-1
chr4_3 exon 52973836 52974176 52973836 ID=Msa0647000-mRNA-1:exon:13086;Parent=Msa0647000-mRNA-1
chr4_3 exon 52974282 52974434 52974282 ID=Msa0647000-mRNA-1:exon:13087;Parent=Msa0647000-mRNA-1
chr4_3 exon 52974735 52974827 52974735 ID=Msa0647000-mRNA-1:exon:13088;Parent=Msa0647000-mRNA-1
chr4_3 exon 52975108 52975166 52975108 ID=Msa0647000-mRNA-1:exon:13089;Parent=Msa0647000-mRNA-1
chr4_3 exon 52975530 52975623 52975530 ID=Msa0647000-mRNA-1:exon:13090;Parent=Msa0647000-mRNA-1
chr4_3 exon 52976393 52976536 52976393 ID=Msa0647000-mRNA-1:exon:13091;Parent=Msa0647000-mRNA-1
chr4_3 exon 52977296 52977712 52977296 ID=Msa0647000-mRNA-1:exon:13092;Parent=Msa0647000-mRNA-1
chr4_3 five_prime_UTR 52972754 52972822 52972754 ID=Msa0647000-mRNA-1:five_prime_utr;Parent=Msa0647000-mRNA-1
chr4_3 CDS 52972823 52973165 52972823 ID=Msa0647000-mRNA-1:cds;Parent=Msa0647000-mRNA-1
chr4_3 CDS 52973836 52974176 52973836 ID=Msa0647000-mRNA-1:cds;Parent=Msa0647000-mRNA-1
chr4_3 CDS 52974282 52974434 52974282 ID=Msa0647000-mRNA-1:cds;Parent=Msa0647000-mRNA-1
chr4_3 CDS 52974735 52974827 52974735 ID=Msa0647000-mRNA-1:cds;Parent=Msa0647000-mRNA-1
chr4_3 CDS 52975108 52975166 52975108 ID=Msa0647000-mRNA-1:cds;Parent=Msa0647000-mRNA-1
chr4_3 CDS 52975530 52975623 52975530 ID=Msa0647000-mRNA-1:cds;Parent=Msa0647000-mRNA-1
chr4_3 CDS 52976393 52976536 52976393 ID=Msa0647000-mRNA-1:cds;Parent=Msa0647000-mRNA-1
chr4_3 CDS 52977296 52977712 52977296 ID=Msa0647000-mRNA-1:cds;Parent=Msa0647000-mRNA-1
Gene Sequence

>Msa0647000

ATGGCTTCGTTATTATTACATTCTTGTTCATGTTCATGGTTCTCTTCGTTGCGCATGAAACCAACAAGGTTAAAAACTAGGAAGCTGTGTTGTGTTATGAACCAAGAAAACAACAAGGAATCTTCTGAAGCTGAAAAAACTGCTTCTGTTGATCCTATAAAGCTTGCGTTTAATAAAGCTAAAGCTTATAAAGAATCGATTAAATCAAACTCTGGTTTGGGAATTGAGCAAAACGGTGCTGATGGAGGGAAAAAGGATTTGCCGGTTTCTGTGAAGATCGCAATGGAGAAGGCCAAAAAGTATAAGCAGAATAAAGAGGTTTCTGTTAGTGAAACTGATCAAGGATTGCAAGGAGGGAGTGAGAGTACTTGGGGAGAAAATGTGAATGACAATAGTGTTGGTAAGAAGGGAGAATTGTCTGTTTCAAAGATGGATTTTGTGGGGCTTGGCTTTTCGGACAATAAGAAGACAAGGGGATTGCCACCTGGACTGGTTCCTTTTTCAGACTCCTTCTCAGACGATGACTTGCCTGAGGTGGAGCTTATTATCGGAGATGCAAACAACTTCGATGCTACAACAACAGCTCCACAGCCTGAACAGACTAAGGATGATGAGTCAGAACTGTACAAGCCAAAAGTTTCTACATGGGGTGTATTTCCTAGACCTAACAATATTTCAAAAACATTTGGAGGTGGAAGAACTATACGTCCTGGGGAGATTTTAGAGAGTGAAGAAGAAAAGGCTGCTAAAGAAGCACGCACGAAGCAGATGCTTGCTGCTTACAAGAAGAAATATGGATTAAATATTGATCCAAAGCTAAAAATCGAATGCGAGGAGGCATTGAAGGATGGTGACTTCTTAATGGACGCGGGAAAACTGAAGGATGCTTTACCCTACTATGAGAAAGTCATTGACAAATTACCCTTCAAGAGTGAGCTACATGGATTAGCTGCTTTACAGTGGTCGATTTGTCAAGACTCCCTCAGTAGGCACAATGAAGCTCGAAGTATGTATGAAAAGCTTCAATCTCACCCAAGTGTTAAAGTAGGCAAGAAAGCAAGACAATTCATGTACAGCTTTCAGGCTATGGAAATGATGAAGGTTAGAACAAGATCTTCTCGTTATTCAAAGAACACATTTTACCAGAGTTATTTTGATGCATTTATCGAAAACAAATCAAACTACCCCGTTAAAGATGAAGTGGCTCAAGAAAGTGAAATCAATCAGGAACAATGTGTGTTGGTCCTTTCTTCGGACAAAGTGAGCCAACAAGCGACTCTAAAAGACCTGGCTATGATATCACTAAGGGTGGCCGCTTCAAACGCGACCGGGATACTATCCGATGTGAAAACGATGATCGACGATCCAAATTTGGACCCAGGAATTCAACAAGGTTTGGCTGATTGCAAGGAGACTTTATTGGATGCAGAAAGCCAGCTTGAGGATACTGTGGCAGCTCTTTTGTCAAATGCCAAACGTGATGCTCAATTATGGTTGCAAGCAGCTTTGGCTGCAATTGATACATGTGATGCTTCAATACCTGGTGATGATGATGTTCTCTCTACAAAGAGTCGAGCATTTCGTCAATTGTGCAACATTGCTGTTGCCGTTAATAAGGCTATGACAGATGATGATAAAGCCTAA

Protein sequence

>Msa0647000

MASLLLHSCSCSWFSSLRMKPTRLKTRKLCCVMNQENNKESSEAEKTASVDPIKLAFNKAKAYKESIKSNSGLGIEQNGADGGKKDLPVSVKIAMEKAKKYKQNKEVSVSETDQGLQGGSESTWGENVNDNSVGKKGELSVSKMDFVGLGFSDNKKTRGLPPGLVPFSDSFSDDDLPEVELIIGDANNFDATTTAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTFGGGRTIRPGEILESEEEKAAKEARTKQMLAAYKKKYGLNIDPKLKIECEEALKDGDFLMDAGKLKDALPYYEKVIDKLPFKSELHGLAALQWSICQDSLSRHNEARSMYEKLQSHPSVKVGKKARQFMYSFQAMEMMKVRTRSSRYSKNTFYQSYFDAFIENKSNYPVKDEVAQESEINQEQCVLVLSSDKVSQQATLKDLAMISLRVAASNATGILSDVKTMIDDPNLDPGIQQGLADCKETLLDAESQLEDTVAALLSNAKRDAQLWLQAALAAIDTCDASIPGDDDVLSTKSRAFRQLCNIAVAVNKAMTDDDKA*