Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023840 | XP_013467847.1 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 8.67e-101 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023840 | sp|Q9M1A8|RPB8B_ARATH | 61.702 | 141 | 53 | 1 | 5 | 145 | 7 | 146 | 3.35e-63 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003300 | Msa0023840 | -0.815044 | 1.130959e-51 | -8.615850e-47 |
| Msa0017070 | Msa0023840 | -0.809013 | 2.334178e-50 | -8.615850e-47 |
| Msa0023840 | Msa0039330 | -0.808756 | 2.648571e-50 | -8.615850e-47 |
| Msa0023840 | Msa0050380 | -0.800511 | 1.392781e-48 | -8.615850e-47 |
| Msa0023840 | Msa0183010 | 0.803499 | 3.386729e-49 | -8.615850e-47 |
| Msa0023840 | Msa0201070 | -0.806236 | 9.073228e-50 | -8.615850e-47 |
| Msa0023840 | Msa0230640 | 0.826232 | 3.037619e-54 | -8.615850e-47 |
| Msa0023840 | Msa0305190 | -0.807108 | 5.938546e-50 | -8.615850e-47 |
| Msa0023840 | Msa0342070 | -0.815655 | 8.269488e-52 | -8.615850e-47 |
| Msa0023840 | Msa0344690 | 0.856951 | 2.273601e-62 | -8.615850e-47 |
| Msa0023840 | Msa0350320 | 0.810643 | 1.041014e-50 | -8.615850e-47 |
| Msa0023840 | Msa0350870 | -0.811800 | 5.839674e-51 | -8.615850e-47 |
| Msa0023840 | Msa0392040 | 0.817235 | 3.663813e-52 | -8.615850e-47 |
| Msa0023840 | Msa0436370 | -0.809979 | 1.447601e-50 | -8.615850e-47 |
| Msa0023840 | Msa0469940 | 0.859893 | 3.017139e-63 | -8.615850e-47 |
| Msa0023840 | Msa0486170 | 0.822383 | 2.439746e-53 | -8.615850e-47 |
| Msa0023840 | Msa0572480 | -0.818535 | 1.863807e-52 | -8.615850e-47 |
| Msa0023840 | Msa0574760 | 0.805587 | 1.242377e-49 | -8.615850e-47 |
| Msa0023840 | Msa0613460 | -0.825467 | 4.613277e-54 | -8.615850e-47 |
| Msa0023840 | Msa0766630 | -0.808544 | 2.940195e-50 | -8.615850e-47 |
| Msa0023840 | Msa0807030 | -0.823256 | 1.527249e-53 | -8.615850e-47 |
| Msa0023840 | Msa0832970 | -0.803603 | 3.222410e-49 | -8.615850e-47 |
| Msa0023840 | Msa0874630 | -0.814413 | 1.560669e-51 | -8.615850e-47 |
| Msa0023840 | Msa0886330 | 0.804049 | 2.603144e-49 | -8.615850e-47 |
| Msa0023840 | Msa0967280 | -0.800297 | 1.539359e-48 | -8.615850e-47 |
| Msa0023840 | Msa0967580 | -0.805314 | 1.417064e-49 | -8.615850e-47 |
| Msa0023840 | Msa1068200 | 0.826571 | 2.521576e-54 | -8.615850e-47 |
| Msa0023840 | Msa1075080 | 0.802867 | 4.575986e-49 | -8.615850e-47 |
| Msa0023840 | Msa1075220 | 0.818305 | 2.100573e-52 | -8.615850e-47 |
| Msa0023840 | Msa1090260 | -0.808784 | 2.612365e-50 | -8.615850e-47 |
| Msa0023840 | Msa1121490 | -0.812267 | 4.620625e-51 | -8.615850e-47 |
| Msa0023840 | Msa1139000 | 0.811565 | 6.568807e-51 | -8.615850e-47 |
| Msa0023840 | Msa1144720 | 0.850898 | 1.260457e-60 | -8.615850e-47 |
| Msa0023840 | Msa1156340 | 0.833654 | 4.709477e-56 | -8.615850e-47 |
| Msa0023840 | Msa1162550 | 0.828685 | 7.835364e-55 | -8.615850e-47 |
| Msa0023840 | Msa1184550 | -0.809419 | 1.910152e-50 | -8.615850e-47 |
| Msa0023840 | Msa1255060 | -0.802247 | 6.143028e-49 | -8.615850e-47 |
| Msa0023840 | Msa1257800 | 0.817587 | 3.052574e-52 | -8.615850e-47 |
| Msa0023840 | Msa1262990 | 0.812339 | 4.456155e-51 | -8.615850e-47 |
| Msa0023840 | Msa1317320 | 0.815548 | 8.736149e-52 | -8.615850e-47 |
| Msa0023840 | Msa1379850 | -0.811038 | 8.548112e-51 | -8.615850e-47 |
| Msa0023840 | Msa1451620 | 0.828519 | 8.594688e-55 | -8.615850e-47 |
| Msa0023840 | Msa1461710 | -0.813796 | 2.134571e-51 | -8.615850e-47 |
| Msa0023840 | Msa1461810 | 0.801568 | 8.469073e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023840 | MtrunA17_Chr1g0177291 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 7.97e-105 | 295 |
| Msa0023840 | MtrunA17_Chr4g0075731 | 44.295 | 149 | 68 | 4 | 1 | 145 | 1 | 138 | 8.76e-34 | 115 |
| Msa0023840 | MtrunA17_Chr6g0487181 | 44.295 | 149 | 68 | 4 | 1 | 145 | 1 | 138 | 8.76e-34 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023840 | AT3G59600.1 | 61.702 | 141 | 53 | 1 | 5 | 145 | 7 | 146 | 3.40e-64 | 193 |
| Msa0023840 | AT1G54250.1 | 61.702 | 141 | 53 | 1 | 5 | 145 | 7 | 146 | 1.70e-63 | 191 |
Find 53 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCTGTCCCATCTTTA+AGG | 0.163307 | 1_1:+45618493 | None:intergenic |
| GATGATTTAAAACAAATATT+TGG | 0.195820 | 1_1:-45616340 | Msa0023840:three_prime_UTR |
| GGATTATAGTAGCCAGTATC+TGG | 0.234479 | 1_1:+45618431 | None:intergenic |
| CACTTCTTGAAGATATCTTT+AGG | 0.284321 | 1_1:-45618734 | Msa0023840:CDS |
| AGGGAGTTGAATATTTCTTT+TGG | 0.310558 | 1_1:-45616555 | Msa0023840:CDS |
| ACTTCTTGAAGATATCTTTA+GGG | 0.337546 | 1_1:-45618733 | Msa0023840:CDS |
| CCTGATGGCACCCCAGATAC+TGG | 0.345604 | 1_1:-45618443 | Msa0023840:CDS |
| CAGCATGACTATCTAGTTTG+TGG | 0.355058 | 1_1:-45616244 | Msa0023840:three_prime_UTR |
| AATTTCTGTCCCATCTTTAA+GGG | 0.357752 | 1_1:+45618494 | None:intergenic |
| GAGGAGGAACGGTGGTGGAT+AGG | 0.368114 | 1_1:+45620392 | None:intergenic |
| CACCGTTCCTCCTCTTCTCT+TGG | 0.372762 | 1_1:-45620383 | Msa0023840:intron |
| TCCCACCTCTCACTGATTCC+CGG | 0.373185 | 1_1:-45620425 | Msa0023840:five_prime_UTR |
| CCAGTATCTGGGGTGCCATC+AGG | 0.417512 | 1_1:+45618443 | None:intergenic |
| GTGGATAGGAGGAGCTGCGC+CGG | 0.433526 | 1_1:+45620406 | None:intergenic |
| AACTATGAATATGTCATGTA+TGG | 0.442578 | 1_1:-45617759 | Msa0023840:CDS |
| AAACAAGCTTTCTTCACTCT+TGG | 0.445244 | 1_1:+45616429 | None:intergenic |
| TACAGAGTAACAGAGGGTTC+AGG | 0.455659 | 1_1:-45617729 | Msa0023840:CDS |
| GATAGTCATGCTGCAATCCT+TGG | 0.470526 | 1_1:+45616254 | None:intergenic |
| GGTAATCATGAAGTAACTTC+CGG | 0.471518 | 1_1:-45616319 | Msa0023840:three_prime_UTR |
| TTGTTTCTAACATCAATGTA+TGG | 0.476810 | 1_1:-45616412 | Msa0023840:three_prime_UTR |
| TGAGCTATATCCCTTAAAGA+TGG | 0.478515 | 1_1:-45618504 | Msa0023840:CDS |
| GATTATAGTAGCCAGTATCT+GGG | 0.489343 | 1_1:+45618432 | None:intergenic |
| GAGGAACGGTGGTGGATAGG+AGG | 0.498730 | 1_1:+45620395 | None:intergenic |
| TGACTATCTAGTTTGTGGAT+TGG | 0.499748 | 1_1:-45616239 | Msa0023840:three_prime_UTR |
| TACCGTTTGTAATTCTAATG+TGG | 0.528373 | 1_1:-45616379 | Msa0023840:three_prime_UTR |
| AGATACTGGCTACTATAATC+CGG | 0.532782 | 1_1:-45618429 | Msa0023840:intron |
| TGGATAGGAGGAGCTGCGCC+GGG | 0.537171 | 1_1:+45620407 | None:intergenic |
| GAGAAGAGGAGGAACGGTGG+TGG | 0.539747 | 1_1:+45620387 | None:intergenic |
| CGCCGGGAATCAGTGAGAGG+TGG | 0.541797 | 1_1:+45620423 | None:intergenic |
| TGGGCTTCTGATGATGCTGA+AGG | 0.547894 | 1_1:-45616532 | Msa0023840:CDS |
| ATCCACATTAGAATTACAAA+CGG | 0.550991 | 1_1:+45616377 | None:intergenic |
| GAGCTATATCCCTTAAAGAT+GGG | 0.563262 | 1_1:-45618503 | Msa0023840:CDS |
| AGTGAGCTGAACTGCTACAA+TGG | 0.571239 | 1_1:-45618763 | Msa0023840:exon |
| AATCCTTGGTCTGATATCAC+AGG | 0.579037 | 1_1:+45616268 | None:intergenic |
| AGAGTAACAGAGGGTTCAGG+AGG | 0.579301 | 1_1:-45617726 | Msa0023840:CDS |
| ACAAGTTTGAGCTTGATCAA+AGG | 0.582436 | 1_1:-45616491 | Msa0023840:CDS |
| GCCGGGAATCAGTGAGAGGT+GGG | 0.592745 | 1_1:+45620424 | None:intergenic |
| TGACTCACCAAGAGAAGAGG+AGG | 0.598727 | 1_1:+45620376 | None:intergenic |
| GTGTGACTCACCAAGAGAAG+AGG | 0.599795 | 1_1:+45620373 | None:intergenic |
| GGGCTTCTGATGATGCTGAA+GGG | 0.605774 | 1_1:-45616531 | Msa0023840:CDS |
| AAAGGTTGTATCTTCTGATG+AGG | 0.609382 | 1_1:-45616473 | Msa0023840:CDS |
| CACCAAGAGAAGAGGAGGAA+CGG | 0.616450 | 1_1:+45620381 | None:intergenic |
| GTTCCAACACTCAATCCTGA+TGG | 0.623194 | 1_1:-45618458 | Msa0023840:CDS |
| GTAAACATGCATGAAAAGAA+CGG | 0.623774 | 1_1:+45616169 | None:intergenic |
| CTGCGCCGGGAATCAGTGAG+AGG | 0.629639 | 1_1:+45620420 | None:intergenic |
| GTGCCATCAGGATTGAGTGT+TGG | 0.642346 | 1_1:+45618455 | None:intergenic |
| GAGCTGAACTGCTACAATGG+TGG | 0.645893 | 1_1:-45618760 | Msa0023840:exon |
| GAGTAACAGAGGGTTCAGGA+GGG | 0.649006 | 1_1:-45617725 | Msa0023840:CDS |
| AAGCTTTACAGAGTAACAGA+GGG | 0.656174 | 1_1:-45617735 | Msa0023840:CDS |
| AAAGCTTTACAGAGTAACAG+AGG | 0.672431 | 1_1:-45617736 | Msa0023840:CDS |
| ATTATAGTAGCCAGTATCTG+GGG | 0.679143 | 1_1:+45618433 | None:intergenic |
| CAAGAGAAGAGGAGGAACGG+TGG | 0.695512 | 1_1:+45620384 | None:intergenic |
| ATTCCTGTGATATCAGACCA+AGG | 0.711879 | 1_1:-45616271 | Msa0023840:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATATTGTTTTTGATTTT+AGG | - | chr1_1:45616673-45616692 | Msa0023840:intron | 15.0% |
| !! | AAGATAAAATAAAGTTGAAT+TGG | - | chr1_1:45616799-45616818 | Msa0023840:intron | 15.0% |
| !!! | TTTTATCTATAAGATATGTT+AGG | + | chr1_1:45617045-45617064 | None:intergenic | 15.0% |
| !!! | ATTTGAAATTTTGAGAAAAT+TGG | + | chr1_1:45617224-45617243 | None:intergenic | 15.0% |
| !!! | AGCATTTCTTAATATTTTTA+GGG | + | chr1_1:45617295-45617314 | None:intergenic | 15.0% |
| !! | CTATATAATAATCACTTAAT+AGG | - | chr1_1:45618480-45618499 | Msa0023840:CDS | 15.0% |
| !! | TAAATGTTTAATTACCAAAA+TGG | - | chr1_1:45619146-45619165 | Msa0023840:intron | 15.0% |
| !! | AAATGTTTAATTACCAAAAT+GGG | - | chr1_1:45619147-45619166 | Msa0023840:intron | 15.0% |
| !!! | CACTTTTTTTTAAATATCAT+AGG | + | chr1_1:45619393-45619412 | None:intergenic | 15.0% |
| !! | AATTTCATAAGAAATAGAAA+CGG | - | chr1_1:45619517-45619536 | Msa0023840:intron | 15.0% |
| !!! | TGTTCTTAATATATTACTTT+TGG | - | chr1_1:45620035-45620054 | Msa0023840:intron | 15.0% |
| !!! | GATGATTTAAAACAAATATT+TGG | - | chr1_1:45620274-45620293 | Msa0023840:intron | 15.0% |
| !!! | ACATTTGTTAATTGAGATTT+TGG | - | chr1_1:45616563-45616582 | Msa0023840:intron | 20.0% |
| !! | AAAACTTAGTATTATGTGTT+TGG | - | chr1_1:45616943-45616962 | Msa0023840:intron | 20.0% |
| !!! | TAATATTTTTAGGGTATGTT+TGG | + | chr1_1:45617286-45617305 | None:intergenic | 20.0% |
| !!! | CAGCATTTCTTAATATTTTT+AGG | + | chr1_1:45617296-45617315 | None:intergenic | 20.0% |
| !!! | CTTTTATTCAATTTAAGTGT+TGG | - | chr1_1:45617341-45617360 | Msa0023840:intron | 20.0% |
| !! | GACAAAAAGTTATTTGAAAA+AGG | - | chr1_1:45617924-45617943 | Msa0023840:intron | 20.0% |
| !!! | TTATTTTTCGATTCTTTTAG+TGG | - | chr1_1:45617961-45617980 | Msa0023840:intron | 20.0% |
| !!! | TATTTTTCGATTCTTTTAGT+GGG | - | chr1_1:45617962-45617981 | Msa0023840:intron | 20.0% |
| !! | AAATAAGTTCAAATATCTTG+TGG | + | chr1_1:45618334-45618353 | None:intergenic | 20.0% |
| !! | AATAAGTTCAAAATAGCTTA+TGG | + | chr1_1:45618368-45618387 | None:intergenic | 20.0% |
| !! | TAATAATCACTTAATAGGAA+CGG | - | chr1_1:45618485-45618504 | Msa0023840:CDS | 20.0% |
| !!! | CAATTTTATTTTGCATTACT+TGG | + | chr1_1:45618715-45618734 | None:intergenic | 20.0% |
| !!! | TGCTAATTTTTTTATTTTCC+AGG | - | chr1_1:45618809-45618828 | Msa0023840:intron | 20.0% |
| !!! | GCTAATTTTTTTATTTTCCA+GGG | - | chr1_1:45618810-45618829 | Msa0023840:intron | 20.0% |
| !!! | TTTTATCAATTCATGTTGTT+TGG | - | chr1_1:45619100-45619119 | Msa0023840:intron | 20.0% |
| !!! | AGTATGTATGTATTTGTTTT+AGG | - | chr1_1:45619190-45619209 | Msa0023840:intron | 20.0% |
| !!! | ACATTGTTTCTGTAAAAAAA+AGG | - | chr1_1:45619303-45619322 | Msa0023840:intron | 20.0% |
| !! | AGTACTATAATGTTAATCAA+TGG | - | chr1_1:45619897-45619916 | Msa0023840:intron | 20.0% |
| !! | TCTTAAAAAAAAACTCTAAC+CGG | + | chr1_1:45619944-45619963 | None:intergenic | 20.0% |
| !!! | TTAATATATTACTTTTGGCA+GGG | - | chr1_1:45620040-45620059 | Msa0023840:intron | 20.0% |
| !!! | ATTTGTTTTAAATCATCATC+AGG | + | chr1_1:45620271-45620290 | None:intergenic | 20.0% |
| !!! | ATTTTGGTGCTTTTGTTTAT+TGG | - | chr1_1:45616579-45616598 | Msa0023840:intron | 25.0% |
| !!! | TTTTGGTGCTTTTGTTTATT+GGG | - | chr1_1:45616580-45616599 | Msa0023840:intron | 25.0% |
| !!! | ACATAATACTAAGTTTTGTG+AGG | + | chr1_1:45616940-45616959 | None:intergenic | 25.0% |
| ! | ATAAGATATGTTAGGCTTTA+CGG | + | chr1_1:45617037-45617056 | None:intergenic | 25.0% |
| ! | AATATTAAGAAATGCTGTCT+TGG | - | chr1_1:45617299-45617318 | Msa0023840:intron | 25.0% |
| !!! | CGGTTTTAGTGTTAAAAATA+CGG | - | chr1_1:45617495-45617514 | Msa0023840:intron | 25.0% |
| !!! | GGTTTTAGTGTTAAAAATAC+GGG | - | chr1_1:45617496-45617515 | Msa0023840:intron | 25.0% |
| !!! | CAAAGAAAATTGATTGGTTT+GGG | - | chr1_1:45617538-45617557 | Msa0023840:intron | 25.0% |
| ! | GTAGAGAATGAAATAAAGTA+GGG | + | chr1_1:45617626-45617645 | None:intergenic | 25.0% |
| ! | AGTAGAGAATGAAATAAAGT+AGG | + | chr1_1:45617627-45617646 | None:intergenic | 25.0% |
| ! | TAAACCAAAGACAAATCAAA+AGG | + | chr1_1:45617798-45617817 | None:intergenic | 25.0% |
| ! | GAAACTTAAAAATAAGGTGA+AGG | + | chr1_1:45617831-45617850 | None:intergenic | 25.0% |
| ! | CTCACTGAAACTTAAAAATA+AGG | + | chr1_1:45617837-45617856 | None:intergenic | 25.0% |
| ! | ACTTCTTGAAGATATCTTTA+GGG | - | chr1_1:45617881-45617900 | Msa0023840:intron | 25.0% |
| !! | CAAATAACTTTTTGTCATCT+GGG | + | chr1_1:45617920-45617939 | None:intergenic | 25.0% |
| !! | TCAAATAACTTTTTGTCATC+TGG | + | chr1_1:45617921-45617940 | None:intergenic | 25.0% |
| ! | ACGATTAATGAATGTAATAC+CGG | + | chr1_1:45618207-45618226 | None:intergenic | 25.0% |
| ! | TAACCAAATTTAGTACAGAT+AGG | + | chr1_1:45618648-45618667 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTCCAGGGTAAT+CGG | - | chr1_1:45618817-45618836 | Msa0023840:intron | 25.0% |
| ! | AACTATGAATATGTCATGTA+TGG | - | chr1_1:45618855-45618874 | Msa0023840:intron | 25.0% |
| !! | TGACAGAATTGATTTATGTT+TGG | - | chr1_1:45619056-45619075 | Msa0023840:intron | 25.0% |
| !! | TCTAGAGGTTTTTATATCAA+AGG | + | chr1_1:45619366-45619385 | None:intergenic | 25.0% |
| !! | AATATCATAGGTTTTTCTAG+AGG | + | chr1_1:45619381-45619400 | None:intergenic | 25.0% |
| ! | TATAAAACAAACTGTTACTG+CGG | - | chr1_1:45619426-45619445 | Msa0023840:intron | 25.0% |
| !!! | AAAGATAAAAGTGTTTAGGT+TGG | + | chr1_1:45619494-45619513 | None:intergenic | 25.0% |
| !!! | TTGCAAAGATAAAAGTGTTT+AGG | + | chr1_1:45619498-45619517 | None:intergenic | 25.0% |
| ! | CTTAAAAAAAAACTCTAACC+GGG | + | chr1_1:45619943-45619962 | None:intergenic | 25.0% |
| !!! | CTTAATATATTACTTTTGGC+AGG | - | chr1_1:45620039-45620058 | Msa0023840:intron | 25.0% |
| !! | AGTTGAATATTTCTTTTGGT+GGG | - | chr1_1:45620063-45620082 | Msa0023840:intron | 25.0% |
| !!! | TTGTTTCTAACATCAATGTA+TGG | - | chr1_1:45620202-45620221 | Msa0023840:intron | 25.0% |
| ! | ATCCACATTAGAATTACAAA+CGG | + | chr1_1:45620240-45620259 | None:intergenic | 25.0% |
| !! | TTTTTGTAGATAATTTCTGC+CGG | + | chr1_1:45620317-45620336 | None:intergenic | 25.0% |
| GGAAAAAGGGTTGAAATATT+GGG | + | chr1_1:45616277-45616296 | None:intergenic | 30.0% | |
| AGGAAAAAGGGTTGAAATAT+TGG | + | chr1_1:45616278-45616297 | None:intergenic | 30.0% | |
| !!! | GATTTTTTTTCTACGACAAG+TGG | + | chr1_1:45616446-45616465 | None:intergenic | 30.0% |
| !!! | TTTTGATTTTAGGACCTGTT+TGG | - | chr1_1:45616683-45616702 | Msa0023840:intron | 30.0% |
| CATAAGTTGTTTATCCAAAC+AGG | + | chr1_1:45616700-45616719 | None:intergenic | 30.0% | |
| ! | TTTCTAGTGAAGCTACAAAT+AGG | + | chr1_1:45616972-45616991 | None:intergenic | 30.0% |
| !!! | GTTTTGGCTATATGTGAAAA+AGG | - | chr1_1:45617009-45617028 | Msa0023840:intron | 30.0% |
| AATCAAATAACCCAATCCAA+CGG | - | chr1_1:45617063-45617082 | Msa0023840:intron | 30.0% | |
| TTAGTGTTAAAAATACGGGT+TGG | - | chr1_1:45617500-45617519 | Msa0023840:intron | 30.0% | |
| !!! | AATTTTCTTTGGTTCGGTTT+GGG | + | chr1_1:45617529-45617548 | None:intergenic | 30.0% |
| ! | CCAATCAATTTTCTTTGGTT+CGG | + | chr1_1:45617535-45617554 | None:intergenic | 30.0% |
| ! | CCAAACCAATCAATTTTCTT+TGG | + | chr1_1:45617540-45617559 | None:intergenic | 30.0% |
| ! | CCAAAGAAAATTGATTGGTT+TGG | - | chr1_1:45617537-45617556 | Msa0023840:intron | 30.0% |
| !! | AAATTGATTGGTTTGGGTAT+TGG | - | chr1_1:45617544-45617563 | Msa0023840:intron | 30.0% |
| !! | AATTGATTGGTTTGGGTATT+GGG | - | chr1_1:45617545-45617564 | Msa0023840:intron | 30.0% |
| GGGATTTAGTAATTTACCAA+GGG | + | chr1_1:45617606-45617625 | None:intergenic | 30.0% | |
| AGGGATTTAGTAATTTACCA+AGG | + | chr1_1:45617607-45617626 | None:intergenic | 30.0% | |
| ACTTAAAAATAAGGTGAAGG+TGG | + | chr1_1:45617828-45617847 | None:intergenic | 30.0% | |
| CACTTCTTGAAGATATCTTT+AGG | - | chr1_1:45617880-45617899 | Msa0023840:intron | 30.0% | |
| AATTTCTGTCCCATCTTTAA+GGG | + | chr1_1:45618123-45618142 | None:intergenic | 30.0% | |
| AAATTTCTGTCCCATCTTTA+AGG | + | chr1_1:45618124-45618143 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGAACAATGTCAAA+GGG | - | chr1_1:45618588-45618607 | Msa0023840:intron | 30.0% |
| ATTACTTGGTTAAGAGCAAT+AGG | + | chr1_1:45618701-45618720 | None:intergenic | 30.0% | |
| ! | TTTTGCATATAGTGTGTGTT+TGG | - | chr1_1:45618979-45618998 | Msa0023840:intron | 30.0% |
| TGAGTTTGACAGAATTGATT+TGG | - | chr1_1:45619020-45619039 | Msa0023840:intron | 30.0% | |
| ! | ATCAATTCATGTTGTTTGGA+TGG | - | chr1_1:45619104-45619123 | Msa0023840:intron | 30.0% |
| !!! | CCAAGGTTGTATTTTGTTTT+TGG | + | chr1_1:45619339-45619358 | None:intergenic | 30.0% |
| CCAAAAACAAAATACAACCT+TGG | - | chr1_1:45619336-45619355 | Msa0023840:intron | 30.0% | |
| TTTATATCAAAGGTAAGCCA+AGG | + | chr1_1:45619356-45619375 | None:intergenic | 30.0% | |
| TTACTGCGGAAAAAATGAAT+GGG | - | chr1_1:45619440-45619459 | Msa0023840:intron | 30.0% | |
| GACTAAATTGAGAAATCACA+TGG | - | chr1_1:45619587-45619606 | Msa0023840:intron | 30.0% | |
| ! | CTCAAATCGATTCATATGAA+AGG | + | chr1_1:45619614-45619633 | None:intergenic | 30.0% |
| !! | CTTCAACTGGAATTGATTTT+GGG | - | chr1_1:45619659-45619678 | Msa0023840:intron | 30.0% |
| !! | TTCAACTGGAATTGATTTTG+GGG | - | chr1_1:45619660-45619679 | Msa0023840:intron | 30.0% |
| !! | GATCTTTTGATTGTGATACA+AGG | - | chr1_1:45619986-45620005 | Msa0023840:intron | 30.0% |
| !! | GTTGTACTATGATTGATTTG+TGG | - | chr1_1:45620008-45620027 | Msa0023840:intron | 30.0% |
| ! | AGGGAGTTGAATATTTCTTT+TGG | - | chr1_1:45620059-45620078 | Msa0023840:intron | 30.0% |
| ! | GAGTTGAATATTTCTTTTGG+TGG | - | chr1_1:45620062-45620081 | Msa0023840:intron | 30.0% |
| TACCGTTTGTAATTCTAATG+TGG | - | chr1_1:45620235-45620254 | Msa0023840:intron | 30.0% | |
| GTAAACATGCATGAAAAGAA+CGG | + | chr1_1:45620448-45620467 | None:intergenic | 30.0% | |
| !! | GTAGTTTTGCACTACTTCTA+GGG | - | chr1_1:45616466-45616485 | Msa0023840:CDS | 35.0% |
| !! | TAAGTTTTGTGAGGCTGTTT+GGG | + | chr1_1:45616931-45616950 | None:intergenic | 35.0% |
| TTCACATATAGCCAAAACCA+CGG | + | chr1_1:45617007-45617026 | None:intergenic | 35.0% | |
| ATCACGATGAGAACTCTTAA+GGG | - | chr1_1:45617126-45617145 | Msa0023840:intron | 35.0% | |
| ! | AGAACTCTTAAGGGTATGTT+TGG | - | chr1_1:45617135-45617154 | Msa0023840:intron | 35.0% |
| ! | TATGTTTGGAAGACAGGTTT+TGG | - | chr1_1:45617149-45617168 | Msa0023840:intron | 35.0% |
| ! | TATGTTTGGAAGTTGGGTTT+TGG | + | chr1_1:45617272-45617291 | None:intergenic | 35.0% |
| TTAGGGTATGTTTGGAAGTT+GGG | + | chr1_1:45617278-45617297 | None:intergenic | 35.0% | |
| ! | TTTAGGGTATGTTTGGAAGT+TGG | + | chr1_1:45617279-45617298 | None:intergenic | 35.0% |
| !!! | CAATTTTCTTTGGTTCGGTT+TGG | + | chr1_1:45617530-45617549 | None:intergenic | 35.0% |
| CCGAACCAAAGAAAATTGAT+TGG | - | chr1_1:45617532-45617551 | Msa0023840:intron | 35.0% | |
| !!! | ACGACCTTTTGATTTGTCTT+TGG | - | chr1_1:45617791-45617810 | Msa0023840:intron | 35.0% |
| TGAGCTATATCCCTTAAAGA+TGG | - | chr1_1:45618110-45618129 | Msa0023840:intron | 35.0% | |
| GAGCTATATCCCTTAAAGAT+GGG | - | chr1_1:45618111-45618130 | Msa0023840:intron | 35.0% | |
| ! | ACAGAAATTTTCTCTTGCAC+TGG | - | chr1_1:45618134-45618153 | Msa0023840:intron | 35.0% |
| ATTATAGTAGCCAGTATCTG+GGG | + | chr1_1:45618184-45618203 | None:intergenic | 35.0% | |
| GATTATAGTAGCCAGTATCT+GGG | + | chr1_1:45618185-45618204 | None:intergenic | 35.0% | |
| ! | AGATACTGGCTACTATAATC+CGG | - | chr1_1:45618185-45618204 | Msa0023840:intron | 35.0% |
| TCATTAATCGTTGCATGACT+TGG | - | chr1_1:45618216-45618235 | Msa0023840:intron | 35.0% | |
| CATTAATCGTTGCATGACTT+GGG | - | chr1_1:45618217-45618236 | Msa0023840:intron | 35.0% | |
| ATTAATCGTTGCATGACTTG+GGG | - | chr1_1:45618218-45618237 | Msa0023840:intron | 35.0% | |
| !! | CTTATTTTCATGAGCTCTCT+AGG | - | chr1_1:45618382-45618401 | Msa0023840:intron | 35.0% |
| !!! | CGTTTTTGGAACAATGTCAA+AGG | - | chr1_1:45618587-45618606 | Msa0023840:intron | 35.0% |
| GAATACAGTGATGATTATCC+AGG | - | chr1_1:45618614-45618633 | Msa0023840:intron | 35.0% | |
| GAGCCTATCTGTACTAAATT+TGG | - | chr1_1:45618642-45618661 | Msa0023840:intron | 35.0% | |
| AAAGCTTTACAGAGTAACAG+AGG | - | chr1_1:45618878-45618897 | Msa0023840:intron | 35.0% | |
| AAGCTTTACAGAGTAACAGA+GGG | - | chr1_1:45618879-45618898 | Msa0023840:intron | 35.0% | |
| TGTAAACTGATACTCAAAGC+AGG | + | chr1_1:45618938-45618957 | None:intergenic | 35.0% | |
| GAGTATCAGTTTACAGAGAA+AGG | - | chr1_1:45618943-45618962 | Msa0023840:intron | 35.0% | |
| ! | ATGAACATTTGAGCCCATTT+TGG | + | chr1_1:45619163-45619182 | None:intergenic | 35.0% |
| GTTACTGCGGAAAAAATGAA+TGG | - | chr1_1:45619439-45619458 | Msa0023840:intron | 35.0% | |
| !! | TTGGAGAAGATAAGAGTACT+GGG | + | chr1_1:45619475-45619494 | None:intergenic | 35.0% |
| !! | ACCATGGTTGTTTTCTTCAA+AGG | - | chr1_1:45619565-45619584 | Msa0023840:intron | 35.0% |
| ! | TCCTTTGAAGAAAACAACCA+TGG | + | chr1_1:45619569-45619588 | None:intergenic | 35.0% |
| !! | GCTTCAACTGGAATTGATTT+TGG | - | chr1_1:45619658-45619677 | Msa0023840:intron | 35.0% |
| ! | GTCATTTAGAAGCTAGTTTC+TGG | - | chr1_1:45619810-45619829 | Msa0023840:intron | 35.0% |
| CACTTGAAAACAACATGCAT+CGG | + | chr1_1:45619836-45619855 | None:intergenic | 35.0% | |
| !!! | GTTTTTCTGAAACAACTTCC+CGG | - | chr1_1:45619922-45619941 | Msa0023840:intron | 35.0% |
| ACAAGTTTGAGCTTGATCAA+AGG | - | chr1_1:45620123-45620142 | Msa0023840:intron | 35.0% | |
| AAAGGTTGTATCTTCTGATG+AGG | - | chr1_1:45620141-45620160 | Msa0023840:intron | 35.0% | |
| AAACAAGCTTTCTTCACTCT+TGG | + | chr1_1:45620188-45620207 | None:intergenic | 35.0% | |
| GGTAATCATGAAGTAACTTC+CGG | - | chr1_1:45620295-45620314 | Msa0023840:intron | 35.0% | |
| ! | TGACTATCTAGTTTGTGGAT+TGG | - | chr1_1:45620375-45620394 | Msa0023840:intron | 35.0% |
| ! | AGGGTTGAAATATTGGGTTG+AGG | + | chr1_1:45616271-45616290 | None:intergenic | 40.0% |
| TGAAGTGCGTAGAGGAAAAA+GGG | + | chr1_1:45616290-45616309 | None:intergenic | 40.0% | |
| ATGAAGTGCGTAGAGGAAAA+AGG | + | chr1_1:45616291-45616310 | None:intergenic | 40.0% | |
| GAGAAAAATGAAGTGCGTAG+AGG | + | chr1_1:45616298-45616317 | None:intergenic | 40.0% | |
| AGCGAGCATAATCAGAGTAA+AGG | + | chr1_1:45616381-45616400 | None:intergenic | 40.0% | |
| !! | CGTAGTTTTGCACTACTTCT+AGG | - | chr1_1:45616465-45616484 | Msa0023840:CDS | 40.0% |
| !! | GCTGTTTTCATAAGCTGTCT+TGG | - | chr1_1:45616839-45616858 | Msa0023840:intron | 40.0% |
| !! | CTAAGTTTTGTGAGGCTGTT+TGG | + | chr1_1:45616932-45616951 | None:intergenic | 40.0% |
| TCAATACCTCATGCTTCTGT+TGG | - | chr1_1:45617103-45617122 | Msa0023840:intron | 40.0% | |
| GATCACGATGAGAACTCTTA+AGG | - | chr1_1:45617125-45617144 | Msa0023840:intron | 40.0% | |
| ! | TAAGGGTATGTTTGGAAGAC+AGG | - | chr1_1:45617143-45617162 | Msa0023840:intron | 40.0% |
| !!! | AAGACAGGTTTTGGAGGAAA+AGG | - | chr1_1:45617158-45617177 | Msa0023840:intron | 40.0% |
| !!! | AGACAGGTTTTGGAGGAAAA+GGG | - | chr1_1:45617159-45617178 | Msa0023840:intron | 40.0% |
| AAGAAATGCTGTCTTGGTTG+AGG | - | chr1_1:45617305-45617324 | Msa0023840:intron | 40.0% | |
| AGAAATGCTGTCTTGGTTGA+GGG | - | chr1_1:45617306-45617325 | Msa0023840:intron | 40.0% | |
| TGTTCATGAGCTAGTTGGTT+CGG | - | chr1_1:45617475-45617494 | Msa0023840:intron | 40.0% | |
| !! | ATTGGTTTGGGTATTGGGTT+TGG | - | chr1_1:45617550-45617569 | Msa0023840:intron | 40.0% |
| !! | AATTTACCAAGGGTGTTCAC+AGG | + | chr1_1:45617596-45617615 | None:intergenic | 40.0% |
| TCCTCATGTAGAGAAGAGAA+GGG | - | chr1_1:45617648-45617667 | Msa0023840:intron | 40.0% | |
| TGTGATCAGTATGTAGAGGT+TGG | + | chr1_1:45617685-45617704 | None:intergenic | 40.0% | |
| TGCTTGTGATCAGTATGTAG+AGG | + | chr1_1:45617689-45617708 | None:intergenic | 40.0% | |
| TTTCAGAACCGAAGTTACTG+AGG | + | chr1_1:45617716-45617735 | None:intergenic | 40.0% | |
| GGATTATAGTAGCCAGTATC+TGG | + | chr1_1:45618186-45618205 | None:intergenic | 40.0% | |
| ! | TTTGGAACAATGTCAAAGGG+AGG | - | chr1_1:45618591-45618610 | Msa0023840:intron | 40.0% |
| TTGGAACAATGTCAAAGGGA+GGG | - | chr1_1:45618592-45618611 | Msa0023840:intron | 40.0% | |
| AATTGCTACTACTGCACAGA+TGG | - | chr1_1:45618730-45618749 | Msa0023840:CDS | 40.0% | |
| !! | ATAGTGTGTGTTTGGTTCTG+CGG | - | chr1_1:45618987-45619006 | Msa0023840:intron | 40.0% |
| ! | GTTGGAGAAGATAAGAGTAC+TGG | + | chr1_1:45619476-45619495 | None:intergenic | 40.0% |
| TAATTTCCCAATCGTGGCAA+CGG | + | chr1_1:45619543-45619562 | None:intergenic | 40.0% | |
| TGGTCATAATTTCCCAATCG+TGG | + | chr1_1:45619549-45619568 | None:intergenic | 40.0% | |
| CGATTGGGAAATTATGACCA+TGG | - | chr1_1:45619549-45619568 | Msa0023840:intron | 40.0% | |
| CGTGGGTCAAAATGATGTTT+GGG | + | chr1_1:45619712-45619731 | None:intergenic | 40.0% | |
| TCGTGGGTCAAAATGATGTT+TGG | + | chr1_1:45619713-45619732 | None:intergenic | 40.0% | |
| !!! | CGATGCATGTTGTTTTCAAG+TGG | - | chr1_1:45619834-45619853 | Msa0023840:intron | 40.0% |
| GATCGCTTTCAACTCTAACT+GGG | + | chr1_1:45619970-45619989 | None:intergenic | 40.0% | |
| AGATCGCTTTCAACTCTAAC+TGG | + | chr1_1:45619971-45619990 | None:intergenic | 40.0% | |
| ATTCCTGTGATATCAGACCA+AGG | - | chr1_1:45620343-45620362 | Msa0023840:intron | 40.0% | |
| AATCCTTGGTCTGATATCAC+AGG | + | chr1_1:45620349-45620368 | None:intergenic | 40.0% | |
| ! | CAGCATGACTATCTAGTTTG+TGG | - | chr1_1:45620370-45620389 | Msa0023840:intron | 40.0% |
| AGAAACGTGAATTAGTGCCG+TGG | - | chr1_1:45616987-45617006 | Msa0023840:intron | 45.0% | |
| ! | GTGAATTAGTGCCGTGGTTT+TGG | - | chr1_1:45616993-45617012 | Msa0023840:intron | 45.0% |
| CAAACACAAGCCGTTGGATT+GGG | + | chr1_1:45617076-45617095 | None:intergenic | 45.0% | |
| CTTTACCAAACACAAGCCGT+TGG | + | chr1_1:45617082-45617101 | None:intergenic | 45.0% | |
| !! | GTTTGGAAGACAGGTTTTGG+AGG | - | chr1_1:45617152-45617171 | Msa0023840:intron | 45.0% |
| !! | GTTTGGAAGTTGGGTTTTGG+AGG | + | chr1_1:45617269-45617288 | None:intergenic | 45.0% |
| GAACCAACTAGCTCATGAAC+AGG | + | chr1_1:45617476-45617495 | None:intergenic | 45.0% | |
| CTCCTCATGTAGAGAAGAGA+AGG | - | chr1_1:45617647-45617666 | Msa0023840:intron | 45.0% | |
| ACCCTTCTCTTCTCTACATG+AGG | + | chr1_1:45617652-45617671 | None:intergenic | 45.0% | |
| AGTGAGCTGAACTGCTACAA+TGG | - | chr1_1:45617851-45617870 | Msa0023840:intron | 45.0% | |
| GTTCCAACACTCAATCCTGA+TGG | - | chr1_1:45618156-45618175 | Msa0023840:intron | 45.0% | |
| TACAGATAGGCTCAAACACC+TGG | + | chr1_1:45618635-45618654 | None:intergenic | 45.0% | |
| ! | CAATTGATTGCCGATTACCC+TGG | + | chr1_1:45618830-45618849 | None:intergenic | 45.0% |
| TACAGAGTAACAGAGGGTTC+AGG | - | chr1_1:45618885-45618904 | Msa0023840:intron | 45.0% | |
| TTTGAGTAGACGCAGAAGCT+AGG | - | chr1_1:45619628-45619647 | Msa0023840:intron | 45.0% | |
| ! | CTAGGAAAACTGGCTTCAAC+TGG | - | chr1_1:45619646-45619665 | Msa0023840:intron | 45.0% |
| TGTAGAACGCAGAACCAAAC+AGG | - | chr1_1:45619768-45619787 | Msa0023840:intron | 45.0% | |
| GTAGAACGCAGAACCAAACA+GGG | - | chr1_1:45619769-45619788 | Msa0023840:intron | 45.0% | |
| TAGAACGCAGAACCAAACAG+GGG | - | chr1_1:45619770-45619789 | Msa0023840:intron | 45.0% | |
| AACAAGACTATGCCCCTGTT+TGG | + | chr1_1:45619785-45619804 | None:intergenic | 45.0% | |
| !! | AGGGGCATAGTCTTGTTGAT+TGG | - | chr1_1:45619788-45619807 | Msa0023840:intron | 45.0% |
| GATAGTCATGCTGCAATCCT+TGG | + | chr1_1:45620363-45620382 | None:intergenic | 45.0% | |
| !!! | TTTTTTGTAAATTTTTTAAT+TGG | - | chr1_1:45616513-45616532 | Msa0023840:CDS | 5.0% |
| !! | TATAGTAATTAAAAATTAAT+CGG | - | chr1_1:45619263-45619282 | Msa0023840:intron | 5.0% |
| CACCAAGAGAAGAGGAGGAA+CGG | + | chr1_1:45616236-45616255 | None:intergenic | 50.0% | |
| TGACTCACCAAGAGAAGAGG+AGG | + | chr1_1:45616241-45616260 | None:intergenic | 50.0% | |
| GTGTGACTCACCAAGAGAAG+AGG | + | chr1_1:45616244-45616263 | None:intergenic | 50.0% | |
| CCAAACACAAGCCGTTGGAT+TGG | + | chr1_1:45617077-45617096 | None:intergenic | 50.0% | |
| CCAATCCAACGGCTTGTGTT+TGG | - | chr1_1:45617074-45617093 | Msa0023840:intron | 50.0% | |
| ! | CGTGATCCAACAGAAGCATG+AGG | + | chr1_1:45617112-45617131 | None:intergenic | 50.0% |
| CAACTAGCTCATGAACAGGC+TGG | + | chr1_1:45617472-45617491 | None:intergenic | 50.0% | |
| CAGCCTGTTCATGAGCTAGT+TGG | - | chr1_1:45617470-45617489 | Msa0023840:intron | 50.0% | |
| !! | ACCAAGGGTGTTCACAGGTT+GGG | + | chr1_1:45617591-45617610 | None:intergenic | 50.0% |
| !! | TACCAAGGGTGTTCACAGGT+TGG | + | chr1_1:45617592-45617611 | None:intergenic | 50.0% |
| AGCACGCACCTCAGTAACTT+CGG | - | chr1_1:45617705-45617724 | Msa0023840:intron | 50.0% | |
| GAGCTGAACTGCTACAATGG+TGG | - | chr1_1:45617854-45617873 | Msa0023840:intron | 50.0% | |
| GTGCCATCAGGATTGAGTGT+TGG | + | chr1_1:45618162-45618181 | None:intergenic | 50.0% | |
| AACGCGTTCGCATGGAACTA+GGG | + | chr1_1:45618571-45618590 | None:intergenic | 50.0% | |
| AAACGCGTTCGCATGGAACT+AGG | + | chr1_1:45618572-45618591 | None:intergenic | 50.0% | |
| ! | GTTCCATGCGAACGCGTTTT+TGG | - | chr1_1:45618573-45618592 | Msa0023840:intron | 50.0% |
| GTTCCAAAAACGCGTTCGCA+TGG | + | chr1_1:45618579-45618598 | None:intergenic | 50.0% | |
| AGAGTAACAGAGGGTTCAGG+AGG | - | chr1_1:45618888-45618907 | Msa0023840:intron | 50.0% | |
| GAGTAACAGAGGGTTCAGGA+GGG | - | chr1_1:45618889-45618908 | Msa0023840:intron | 50.0% | |
| GACGCAGAAGCTAGGAAAAC+TGG | - | chr1_1:45619636-45619655 | Msa0023840:intron | 50.0% | |
| ! | TGGGCTTCTGATGATGCTGA+AGG | - | chr1_1:45620082-45620101 | Msa0023840:intron | 50.0% |
| ! | GGGCTTCTGATGATGCTGAA+GGG | - | chr1_1:45620083-45620102 | Msa0023840:intron | 50.0% |
| !! | TCCCACCTCTCACTGATTCC+CGG | - | chr1_1:45616189-45616208 | Msa0023840:three_prime_UTR | 55.0% |
| CAAGAGAAGAGGAGGAACGG+TGG | + | chr1_1:45616233-45616252 | None:intergenic | 55.0% | |
| CACCGTTCCTCCTCTTCTCT+TGG | - | chr1_1:45616231-45616250 | Msa0023840:three_prime_UTR | 55.0% | |
| GCTCATGAACAGGCTGGACA+GGG | + | chr1_1:45617466-45617485 | None:intergenic | 55.0% | |
| AGCTCATGAACAGGCTGGAC+AGG | + | chr1_1:45617467-45617486 | None:intergenic | 55.0% | |
| ! | GGGTGTTCACAGGTTGGGTT+GGG | + | chr1_1:45617586-45617605 | None:intergenic | 55.0% |
| ! | AGGGTGTTCACAGGTTGGGT+TGG | + | chr1_1:45617587-45617606 | None:intergenic | 55.0% |
| ACCCAACCTGTGAACACCCT+TGG | - | chr1_1:45617587-45617606 | Msa0023840:intron | 55.0% | |
| ! | TGCATGACTTGGGGTCTCTC+TGG | - | chr1_1:45618227-45618246 | Msa0023840:intron | 55.0% |
| CGCATGGAACTAGGGACTGA+GGG | + | chr1_1:45618563-45618582 | None:intergenic | 55.0% | |
| TCGCATGGAACTAGGGACTG+AGG | + | chr1_1:45618564-45618583 | None:intergenic | 55.0% | |
| !! | GTGTGTGTTTGGTTCTGCGG+TGG | - | chr1_1:45618990-45619009 | Msa0023840:intron | 55.0% |
| AAACGGCCGTTGCCACGATT+GGG | - | chr1_1:45619534-45619553 | Msa0023840:intron | 55.0% | |
| GTGGTCAAACGCGGTTTCGT+GGG | + | chr1_1:45619729-45619748 | None:intergenic | 55.0% | |
| CACGTTTGCGTGGTCAAACG+CGG | + | chr1_1:45619738-45619757 | None:intergenic | 55.0% | |
| ACCACGCAAACGTGCGTTTG+AGG | - | chr1_1:45619744-45619763 | Msa0023840:intron | 55.0% | |
| GCCGGGAATCAGTGAGAGGT+GGG | + | chr1_1:45616193-45616212 | None:intergenic | 60.0% | |
| !! | GAGGAACGGTGGTGGATAGG+AGG | + | chr1_1:45616222-45616241 | None:intergenic | 60.0% |
| !! | GAGGAGGAACGGTGGTGGAT+AGG | + | chr1_1:45616225-45616244 | None:intergenic | 60.0% |
| GAGAAGAGGAGGAACGGTGG+TGG | + | chr1_1:45616230-45616249 | None:intergenic | 60.0% | |
| ! | CCAGTATCTGGGGTGCCATC+AGG | + | chr1_1:45618174-45618193 | None:intergenic | 60.0% |
| CCTGATGGCACCCCAGATAC+TGG | - | chr1_1:45618171-45618190 | Msa0023840:intron | 60.0% | |
| GAAACGGCCGTTGCCACGAT+TGG | - | chr1_1:45619533-45619552 | Msa0023840:intron | 60.0% | |
| CGTGGTCAAACGCGGTTTCG+TGG | + | chr1_1:45619730-45619749 | None:intergenic | 60.0% | |
| GCCTCAAACGCACGTTTGCG+TGG | + | chr1_1:45619748-45619767 | None:intergenic | 60.0% | |
| CGCCGGGAATCAGTGAGAGG+TGG | + | chr1_1:45616194-45616213 | None:intergenic | 65.0% | |
| CTGCGCCGGGAATCAGTGAG+AGG | + | chr1_1:45616197-45616216 | None:intergenic | 65.0% | |
| TGGATAGGAGGAGCTGCGCC+GGG | + | chr1_1:45616210-45616229 | None:intergenic | 65.0% | |
| GTGGATAGGAGGAGCTGCGC+CGG | + | chr1_1:45616211-45616230 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 45616140 | 45620496 | 45616140 | ID=Msa0023840;Name=Msa0023840 |
| chr1_1 | mRNA | 45616140 | 45620496 | 45616140 | ID=Msa0023840-mRNA-1;Parent=Msa0023840;Name=Msa0023840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=136|1|1|1|0.75|0.6|5|324|145 |
| chr1_1 | exon | 45616140 | 45616575 | 45616140 | ID=Msa0023840-mRNA-1:exon:13033;Parent=Msa0023840-mRNA-1 |
| chr1_1 | exon | 45617714 | 45617805 | 45617714 | ID=Msa0023840-mRNA-1:exon:13032;Parent=Msa0023840-mRNA-1 |
| chr1_1 | exon | 45618430 | 45618587 | 45618430 | ID=Msa0023840-mRNA-1:exon:13031;Parent=Msa0023840-mRNA-1 |
| chr1_1 | exon | 45618691 | 45618789 | 45618691 | ID=Msa0023840-mRNA-1:exon:13030;Parent=Msa0023840-mRNA-1 |
| chr1_1 | exon | 45620384 | 45620496 | 45620384 | ID=Msa0023840-mRNA-1:exon:13029;Parent=Msa0023840-mRNA-1 |
| chr1_1 | five_prime_UTR | 45620384 | 45620496 | 45620384 | ID=Msa0023840-mRNA-1:five_prime_utr;Parent=Msa0023840-mRNA-1 |
| chr1_1 | five_prime_UTR | 45618767 | 45618789 | 45618767 | ID=Msa0023840-mRNA-1:five_prime_utr;Parent=Msa0023840-mRNA-1 |
| chr1_1 | CDS | 45618691 | 45618766 | 45618691 | ID=Msa0023840-mRNA-1:cds;Parent=Msa0023840-mRNA-1 |
| chr1_1 | CDS | 45618430 | 45618587 | 45618430 | ID=Msa0023840-mRNA-1:cds;Parent=Msa0023840-mRNA-1 |
| chr1_1 | CDS | 45617714 | 45617805 | 45617714 | ID=Msa0023840-mRNA-1:cds;Parent=Msa0023840-mRNA-1 |
| chr1_1 | CDS | 45616464 | 45616575 | 45616464 | ID=Msa0023840-mRNA-1:cds;Parent=Msa0023840-mRNA-1 |
| chr1_1 | three_prime_UTR | 45616140 | 45616463 | 45616140 | ID=Msa0023840-mRNA-1:three_prime_utr;Parent=Msa0023840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
