AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1345540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345540 MtrunA17_Chr3g0133851 96.813 251 8 0 1 251 1 251 0.0 504
Msa1345540 MtrunA17_Chr8g0377831 40.254 236 111 7 20 240 16 236 5.33e-47 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345540 AT4G33350.1 64.552 268 74 5 1 250 1 265 1.20e-119 342
Msa1345540 AT4G33350.2 57.836 268 66 5 1 250 1 239 1.45e-101 295
Msa1345540 AT3G23710.1 42.211 199 101 6 52 240 109 303 3.91e-44 151
Msa1345540 AT3G23710.2 42.143 140 77 2 52 187 109 248 2.55e-30 114

Find 88 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATGTTTATTTCAGTTTA+AGG 0.126504 tig0007216:-6274 Msa1345540:three_prime_UTR
TTCATGCAGATACTGCTTTA+AGG 0.144225 tig0007216:-6331 Msa1345540:intron
TTGCAGGTGTTTGAACTATT+TGG 0.187405 tig0007216:-6071 Msa1345540:three_prime_UTR
ACTACCTGTTCAAGAGTTAT+TGG 0.204138 tig0007216:+9342 None:intergenic
TACCAGATCCACTTCAAATA+AGG 0.261652 tig0007216:-8684 Msa1345540:CDS
TCAACATATACAAGAAATTA+AGG 0.262989 tig0007216:-6523 Msa1345540:CDS
AATAAGTTTAATTACTTTGC+AGG 0.264989 tig0007216:-6087 Msa1345540:three_prime_UTR
TTGCTTACAGTCAGAACTTT+TGG 0.296051 tig0007216:-7989 Msa1345540:intron
ACCACATAAAACTATTACTA+TGG 0.299237 tig0007216:+6470 None:intergenic
TGCGAGTGTGAGATTGAATT+AGG 0.307685 tig0007216:+9678 None:intergenic
GGAAAGCTTCAGCGTCTTCT+TGG 0.311162 tig0007216:+9504 None:intergenic
GGAGGTTCCGGCGAGGGATT+TGG 0.319748 tig0007216:+9613 None:intergenic
TATTGAACAGGAACTATCTA+AGG 0.328688 tig0007216:-7297 Msa1345540:CDS
TTAAGGGAGGTCTATGGATA+TGG 0.354872 tig0007216:-6120 Msa1345540:three_prime_UTR
AGGAACTATCTAAGGTTTCC+AGG 0.374565 tig0007216:-7289 Msa1345540:CDS
GAGGTCTATGGATATGGATT+TGG 0.375732 tig0007216:-6114 Msa1345540:three_prime_UTR
TCCATCAAAACCTTCCTTGC+TGG 0.381167 tig0007216:+8374 None:intergenic
CAGATGAGTGAAAAGAATTC+CGG 0.382067 tig0007216:-6588 Msa1345540:CDS
TTGCCCTGTATATTTCTCTA+AGG 0.385806 tig0007216:-7941 Msa1345540:intron
ATTCTATACCATTATTTGCT+TGG 0.386433 tig0007216:+7244 None:intergenic
TTCCTTATTTGAAGTGGATC+TGG 0.389220 tig0007216:+8682 None:intergenic
CAAGGTGGTTACAGTGTTGA+TGG 0.389724 tig0007216:+9738 None:intergenic
TCGGATTCTGTCTTAATTGT+GGG 0.393939 tig0007216:+9874 None:intergenic
CACGAGTTAAGGGAGGTCTA+TGG 0.396337 tig0007216:-6126 Msa1345540:three_prime_UTR
CGCTGAAGCTTTCCTTGCTC+AGG 0.397790 tig0007216:-9495 Msa1345540:intron
CAATGTTTATTTCAGTTTAA+GGG 0.400376 tig0007216:-6273 Msa1345540:three_prime_UTR
CTCGGATTCTGTCTTAATTG+TGG 0.407460 tig0007216:+9873 None:intergenic
CAAACCTTAGAGAAATATAC+AGG 0.430319 tig0007216:+7937 None:intergenic
GTTAAAGCGGCGGCGAAAGC+GGG 0.432701 tig0007216:+9650 None:intergenic
TGTTCCAATAACTCTTGAAC+AGG 0.433983 tig0007216:-9346 Msa1345540:intron
GTGAGATTGAATTAGGGTTC+CGG 0.435865 tig0007216:+9685 None:intergenic
GTTGACTCATTCTTGTCAGC+TGG 0.440922 tig0007216:-6422 Msa1345540:intron
TATATGTGAGAGGGCATTAC+GGG 0.449414 tig0007216:-6296 Msa1345540:three_prime_UTR
TGGAGTTTCCAAGCAAATAA+TGG 0.452005 tig0007216:-7252 Msa1345540:intron
GACGGTGTAAACGGAGGTTC+CGG 0.452524 tig0007216:+9601 None:intergenic
GCGAGTGTGAGATTGAATTA+GGG 0.455909 tig0007216:+9679 None:intergenic
AGCGGCGGCGAAAGCGGGGT+TGG 0.456106 tig0007216:+9655 None:intergenic
CTCAGAGCCGCCAGCAAGGA+AGG 0.460599 tig0007216:-8384 Msa1345540:CDS
GAGGGATTTGGCGACGTTGT+TGG 0.462263 tig0007216:+9625 None:intergenic
GGAACTACTGACGGTGTAAA+CGG 0.467319 tig0007216:+9592 None:intergenic
GTATACTTGTTGAAGGTTGA+AGG 0.475034 tig0007216:-8724 Msa1345540:CDS
AGTGCATTCCTTATTTGAAG+TGG 0.479288 tig0007216:+8676 None:intergenic
CAGGTGTTTGAACTATTTGG+AGG 0.482752 tig0007216:-6068 Msa1345540:three_prime_UTR
GTTATAGGTATACTTGTTGA+AGG 0.482950 tig0007216:-8731 Msa1345540:intron
CATCAGAACGAATTCATTGT+TGG 0.485434 tig0007216:+9571 None:intergenic
TTAGCTTAAGTTTGCTCCCA+CGG 0.504552 tig0007216:+6493 None:intergenic
TGGACAGGAAGATATTGAAC+AGG 0.507901 tig0007216:-7309 Msa1345540:intron
GAAATTAAGGCTTAATTCCG+TGG 0.510348 tig0007216:-6510 Msa1345540:exon
ATATATGTGAGAGGGCATTA+CGG 0.512955 tig0007216:-6297 Msa1345540:three_prime_UTR
GAAGTGGATCTGGTAAGAAT+CGG 0.513973 tig0007216:+8692 None:intergenic
ATTATTTGCTTGGAAACTCC+AGG 0.515291 tig0007216:+7254 None:intergenic
GCTGAAGGTGCTAAGTCCAT+TGG 0.515881 tig0007216:-9542 Msa1345540:CDS
ATTTCAGTTTAAGGGTCCCA+TGG 0.525510 tig0007216:-6265 Msa1345540:three_prime_UTR
TTCATTGTTGGAACTACTGA+CGG 0.538242 tig0007216:+9583 None:intergenic
GTTTATCCACGATCTAGTAA+AGG 0.539568 tig0007216:-9844 Msa1345540:five_prime_UTR
TTTCTTGTATATGTTGAGAA+CGG 0.540120 tig0007216:+6529 None:intergenic
TCCAGGGTATCTAAAAGTCC+TGG 0.546198 tig0007216:-7272 Msa1345540:CDS
AAATTAAGGCTTAATTCCGT+GGG 0.566854 tig0007216:-6509 Msa1345540:exon
TCTAATCCTTTACTAGATCG+TGG 0.567177 tig0007216:+9838 None:intergenic
ACTTCAAATAAGGAATGCAC+TGG 0.568685 tig0007216:-8674 Msa1345540:CDS
GTAAACGGAGGTTCCGGCGA+GGG 0.577581 tig0007216:+9607 None:intergenic
GCGAAAGCAAAGCAATCCAA+TGG 0.584246 tig0007216:+9526 None:intergenic
TGAATTTCGAGGCAATGCTA+AGG 0.584914 tig0007216:-9370 Msa1345540:CDS
TGTCTTCAAAACGAGTTGCA+AGG 0.588693 tig0007216:+9720 None:intergenic
AGTTAAAGCGGCGGCGAAAG+CGG 0.589283 tig0007216:+9649 None:intergenic
ACTGCTTTAAGGATTTACAA+TGG 0.592283 tig0007216:-6320 Msa1345540:three_prime_UTR
GGACTTAGCACCTTCAGCAT+CGG 0.600686 tig0007216:+9547 None:intergenic
TACAATGGATATATGTGAGA+GGG 0.601524 tig0007216:-6305 Msa1345540:three_prime_UTR
GACGTTGTTGGAAGTTAAAG+CGG 0.609660 tig0007216:+9637 None:intergenic
GGAACTATCTAAGGTTTCCA+GGG 0.610500 tig0007216:-7288 Msa1345540:CDS
TCGTGGATAAACTATAAGCT+CGG 0.613169 tig0007216:+9855 None:intergenic
TCAGCTCAGAGCCGCCAGCA+AGG 0.614025 tig0007216:-8388 Msa1345540:intron
TCAAATAAGGAATGCACTGG+AGG 0.614598 tig0007216:-8671 Msa1345540:intron
AGAGGAACGTTACCTGAGCA+AGG 0.617638 tig0007216:+9483 None:intergenic
AACGTCGCCAAATCCCTCGC+CGG 0.619652 tig0007216:-9620 Msa1345540:CDS
AACCGCGAAAATGATAGAAG+CGG 0.620119 tig0007216:+9764 None:intergenic
TTAAAGCGGCGGCGAAAGCG+GGG 0.621674 tig0007216:+9651 None:intergenic
GAGTGAAAAGAATTCCGGAT+GGG 0.636301 tig0007216:-6583 Msa1345540:CDS
ATCAAAACCTTCCTTGCTGG+CGG 0.637557 tig0007216:+8377 None:intergenic
TGAGTGAAAAGAATTCCGGA+TGG 0.637585 tig0007216:-6584 Msa1345540:CDS
TTACAATGGATATATGTGAG+AGG 0.640775 tig0007216:-6306 Msa1345540:three_prime_UTR
AAATGGAGTCACAAGGACAG+TGG 0.653796 tig0007216:-9790 Msa1345540:CDS
TGTAAACGGAGGTTCCGGCG+AGG 0.668767 tig0007216:+9606 None:intergenic
GTTCTGATGTCCGATGCTGA+AGG 0.674395 tig0007216:-9557 Msa1345540:CDS
GTTGTTGGAAGTTAAAGCGG+CGG 0.684073 tig0007216:+9640 None:intergenic
CTTCAAAACGAGTTGCAAGG+TGG 0.698132 tig0007216:+9723 None:intergenic
AAACCTTAGAGAAATATACA+GGG 0.722468 tig0007216:+7938 None:intergenic
ACTACTGACGGTGTAAACGG+AGG 0.722610 tig0007216:+9595 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAGTTAAATTGTTTTT+TGG + tig0007216:6845-6864 None:intergenic 10.0%
!! ATTTCTAAATTAAAAATAGA+GGG + tig0007216:8075-8094 None:intergenic 10.0%
!! AATTTCTAAATTAAAAATAG+AGG + tig0007216:8076-8095 None:intergenic 10.0%
!!! TTTATGTTTCTTTAATTTTA+TGG - tig0007216:8829-8848 Msa1345540:intron 10.0%
!! ATTTCATTGATACATAAATT+AGG + tig0007216:6958-6977 None:intergenic 15.0%
!!! TATTTTTAATTACGCAATTT+TGG - tig0007216:8107-8126 Msa1345540:intron 15.0%
!! ATAATTTATCATTCATTTGA+AGG - tig0007216:9144-9163 Msa1345540:intron 15.0%
!! TTCAATTATGATAATTAAAC+AGG - tig0007216:9186-9205 Msa1345540:intron 15.0%
!! ATTGGTATAGTTAATAATAT+AGG - tig0007216:9266-9285 Msa1345540:intron 15.0%
!! ATTTGTAGAAGAAACAAAAA+TGG - tig0007216:6114-6133 Msa1345540:three_prime_UTR 20.0%
!!! ATAAATTTTGTTAAACCGTT+TGG - tig0007216:6739-6758 Msa1345540:intron 20.0%
!!! TAAATTTTGTTAAACCGTTT+GGG - tig0007216:6740-6759 Msa1345540:intron 20.0%
!! ATATAGATATGAATTCAAAG+GGG + tig0007216:6995-7014 None:intergenic 20.0%
!! CATATAGATATGAATTCAAA+GGG + tig0007216:6996-7015 None:intergenic 20.0%
!! CTTTGAATTCATATCTATAT+GGG - tig0007216:6995-7014 Msa1345540:intron 20.0%
!!! TTTTTGAAGCATAATAAGTA+TGG - tig0007216:7131-7150 Msa1345540:intron 20.0%
!!! TCAGTTTTAAATGTAAATCA+TGG - tig0007216:7381-7400 Msa1345540:intron 20.0%
!! AAATGTGATTATTAGTCAAT+AGG + tig0007216:7914-7933 None:intergenic 20.0%
!! TCATCATCATAGTTAAAAAT+TGG + tig0007216:8153-8172 None:intergenic 20.0%
!! ATCTTCATTGTTAAACATTT+AGG - tig0007216:8428-8447 Msa1345540:intron 20.0%
!! TCTTCATTGTTAAACATTTA+GGG - tig0007216:8429-8448 Msa1345540:intron 20.0%
!!! ATTTGTTTTAGTGCTATAAA+TGG - tig0007216:8797-8816 Msa1345540:intron 20.0%
!!! TATGGATAAAAACACATTTT+TGG - tig0007216:8847-8866 Msa1345540:intron 20.0%
!!! ATAAAAACACATTTTTGGAT+GGG - tig0007216:8852-8871 Msa1345540:intron 20.0%
!! AAAATTGAAATCAGAACATA+AGG + tig0007216:9049-9068 None:intergenic 20.0%
!! ATTATGATAATTAAACAGGT+TGG - tig0007216:9190-9209 Msa1345540:intron 20.0%
!!! TAATAGTAAAGTTTGCTTAT+TGG - tig0007216:9248-9267 Msa1345540:intron 20.0%
!! TAATAATATAGGAAGCAATT+TGG - tig0007216:9277-9296 Msa1345540:intron 20.0%
!! TCAACATATACAAGAAATTA+AGG - tig0007216:9398-9417 Msa1345540:intron 20.0%
!! AAGAAAAGAAACTATTGTAA+GGG + tig0007216:9543-9562 None:intergenic 20.0%
!! AAAGAAAAGAAACTATTGTA+AGG + tig0007216:9544-9563 None:intergenic 20.0%
!! CAATGTTTATTTCAGTTTAA+GGG - tig0007216:9648-9667 Msa1345540:CDS 20.0%
!! AATAAGTTTAATTACTTTGC+AGG - tig0007216:9834-9853 Msa1345540:five_prime_UTR 20.0%
! AAAAAACAAATTACTGAGAG+AGG + tig0007216:6459-6478 None:intergenic 25.0%
!!! GATTGCTTTTAATTCACTAA+GGG - tig0007216:6693-6712 Msa1345540:intron 25.0%
!! ACTGTTTTCATAAACTATCT+TGG + tig0007216:6787-6806 None:intergenic 25.0%
! ATACATAAATTAGGCAGTTA+TGG + tig0007216:6949-6968 None:intergenic 25.0%
! TATAGATATGAATTCAAAGG+GGG + tig0007216:6994-7013 None:intergenic 25.0%
! CCATATAGATATGAATTCAA+AGG + tig0007216:6997-7016 None:intergenic 25.0%
! CCTTTGAATTCATATCTATA+TGG - tig0007216:6994-7013 Msa1345540:intron 25.0%
!!! GATGATGAAAATACTAGTTT+TGG + tig0007216:7319-7338 None:intergenic 25.0%
!!! GTTTTAAATGTAAATCATGG+AGG - tig0007216:7384-7403 Msa1345540:intron 25.0%
! TATATCAGTAGCTATAAGTT+TGG - tig0007216:7696-7715 Msa1345540:intron 25.0%
! TAACATATAAATTCCAAGAC+TGG - tig0007216:7786-7805 Msa1345540:intron 25.0%
! CAGATACTAAAATAGTTTGA+TGG + tig0007216:7827-7846 None:intergenic 25.0%
! AAACCTTAGAGAAATATACA+GGG + tig0007216:7986-8005 None:intergenic 25.0%
! TGCGTAATTAAAAATATCGA+GGG + tig0007216:8103-8122 None:intergenic 25.0%
! TTGCGTAATTAAAAATATCG+AGG + tig0007216:8104-8123 None:intergenic 25.0%
!!! TTTTAACTATGATGATGATG+TGG - tig0007216:8155-8174 Msa1345540:intron 25.0%
! TGTGTAATACAAAAAACACT+CGG - tig0007216:8351-8370 Msa1345540:intron 25.0%
! GCTAGAATGAAATGAAAAAT+AGG - tig0007216:8468-8487 Msa1345540:intron 25.0%
! ATTAACCCTAAATCTTAGTT+AGG - tig0007216:8537-8556 Msa1345540:intron 25.0%
!! ATATGATAGTTTTCGTTTGT+TGG - tig0007216:8584-8603 Msa1345540:intron 25.0%
! ATTCTATACCATTATTTGCT+TGG + tig0007216:8680-8699 None:intergenic 25.0%
!!! GATAAAAACACATTTTTGGA+TGG - tig0007216:8851-8870 Msa1345540:intron 25.0%
!!! TTCAAATTGTTATTTTCGCA+TGG + tig0007216:8884-8903 None:intergenic 25.0%
!! ACATGTTTTCTTGAATAAAC+AGG - tig0007216:8985-9004 Msa1345540:intron 25.0%
!! CATGTTTTCTTGAATAAACA+GGG - tig0007216:8986-9005 Msa1345540:intron 25.0%
! CGAAGATGTACTTAAAAAAA+TGG - tig0007216:9219-9238 Msa1345540:intron 25.0%
! AGATGTACTTAAAAAAATGG+AGG - tig0007216:9222-9241 Msa1345540:intron 25.0%
! TTTCTTGTATATGTTGAGAA+CGG + tig0007216:9395-9414 None:intergenic 25.0%
!!! ACCATAGTAATAGTTTTATG+TGG - tig0007216:9450-9469 Msa1345540:intron 25.0%
! ACCACATAAAACTATTACTA+TGG + tig0007216:9454-9473 None:intergenic 25.0%
! GCAATGTTTATTTCAGTTTA+AGG - tig0007216:9647-9666 Msa1345540:CDS 25.0%
! TGAAAAAACTGTACATGAAT+TGG + tig0007216:9732-9751 None:intergenic 25.0%
!!! CATGTACAGTTTTTTCATTT+TGG - tig0007216:9735-9754 Msa1345540:CDS 25.0%
!! AATGTTTTGCTCGTTGTTTT+AGG - tig0007216:6512-6531 Msa1345540:exon 30.0%
!! CGATTGCTTTTAATTCACTA+AGG - tig0007216:6692-6711 Msa1345540:intron 30.0%
ATGAAATAAGTTCTCCCAAA+CGG + tig0007216:6757-6776 None:intergenic 30.0%
!! CACACCTTTACTTTTAACAA+CGG - tig0007216:7082-7101 Msa1345540:intron 30.0%
!! ACACCTTTACTTTTAACAAC+GGG - tig0007216:7083-7102 Msa1345540:intron 30.0%
TTACCCGTTGTTAAAAGTAA+AGG + tig0007216:7089-7108 None:intergenic 30.0%
!! TTTACTTTTAACAACGGGTA+AGG - tig0007216:7088-7107 Msa1345540:intron 30.0%
!! TTACTTTTAACAACGGGTAA+GGG - tig0007216:7089-7108 Msa1345540:intron 30.0%
!! TTCAAAAAGTATCTGATTGC+AGG + tig0007216:7119-7138 None:intergenic 30.0%
AGAAAAGTTGTTACAGATAC+AGG + tig0007216:7164-7183 None:intergenic 30.0%
AACAAGTATACCTATAACAC+AGG + tig0007216:7188-7207 None:intergenic 30.0%
! GTTATAGGTATACTTGTTGA+AGG - tig0007216:7190-7209 Msa1345540:intron 30.0%
TTGTGTGCAACAATTATAAC+CGG + tig0007216:7282-7301 None:intergenic 30.0%
TGTAAATCATGGAGGAAAAT+AGG - tig0007216:7392-7411 Msa1345540:intron 30.0%
AGAAAACATACCTGAAAAAC+AGG + tig0007216:7576-7595 None:intergenic 30.0%
! TCAGGTATGTTTTCTTACTT+TGG - tig0007216:7581-7600 Msa1345540:intron 30.0%
! AGTTCTTTAGAGGACTAATT+GGG - tig0007216:7612-7631 Msa1345540:intron 30.0%
ATATGTTACATACCATGCAT+TGG + tig0007216:7774-7793 None:intergenic 30.0%
ATTTATATCAGACTCCAGAT+GGG + tig0007216:7850-7869 None:intergenic 30.0%
TATTTATATCAGACTCCAGA+TGG + tig0007216:7851-7870 None:intergenic 30.0%
CAAACCTTAGAGAAATATAC+AGG + tig0007216:7987-8006 None:intergenic 30.0%
TGCATATTGACCATAATAGA+GGG + tig0007216:8045-8064 None:intergenic 30.0%
TTGCATATTGACCATAATAG+AGG + tig0007216:8046-8065 None:intergenic 30.0%
TAACAACTACACCAACTTAA+TGG - tig0007216:8293-8312 Msa1345540:intron 30.0%
AACAACTACACCAACTTAAT+GGG - tig0007216:8294-8313 Msa1345540:intron 30.0%
GTTTAACAATGAAGATGATG+CGG + tig0007216:8424-8443 None:intergenic 30.0%
! TTTAGGGTTAATTGCACTTA+TGG + tig0007216:8529-8548 None:intergenic 30.0%
ACATGCCTAACTAAGATTTA+GGG + tig0007216:8545-8564 None:intergenic 30.0%
TACATGCCTAACTAAGATTT+AGG + tig0007216:8546-8565 None:intergenic 30.0%
!! GTTTTCGTTTGTTGGTTAAA+TGG - tig0007216:8592-8611 Msa1345540:intron 30.0%
TATTGAACAGGAACTATCTA+AGG - tig0007216:8624-8643 Msa1345540:intron 30.0%
! CTTCAGCATAATTGTTTTCA+AGG + tig0007216:8772-8791 None:intergenic 30.0%
GAACTATAGTCTCATACATA+GGG + tig0007216:8908-8927 None:intergenic 30.0%
TGAACTATAGTCTCATACAT+AGG + tig0007216:8909-8928 None:intergenic 30.0%
TTTCTTCCATGGAAAATGTT+AGG - tig0007216:8949-8968 Msa1345540:intron 30.0%
! TTTTCTCCTAACATTTTCCA+TGG + tig0007216:8958-8977 None:intergenic 30.0%
ATGGAAAATGTTAGGAGAAA+AGG - tig0007216:8957-8976 Msa1345540:intron 30.0%
TGGAAAATGTTAGGAGAAAA+GGG - tig0007216:8958-8977 Msa1345540:intron 30.0%
CAGGGAAATATTTATGTTTG+TGG - tig0007216:9004-9023 Msa1345540:intron 30.0%
AAAAATCAAATCATCCCATC+CGG + tig0007216:9355-9374 None:intergenic 30.0%
AAATTAAGGCTTAATTCCGT+GGG - tig0007216:9412-9431 Msa1345540:intron 30.0%
!! ACTGCTTTAAGGATTTACAA+TGG - tig0007216:9601-9620 Msa1345540:CDS 30.0%
TTACAATGGATATATGTGAG+AGG - tig0007216:9615-9634 Msa1345540:CDS 30.0%
TACAATGGATATATGTGAGA+GGG - tig0007216:9616-9635 Msa1345540:CDS 30.0%
TCGGATTCTGTCTTAATTGT+GGG + tig0007216:6050-6069 None:intergenic 35.0%
TCGTGGATAAACTATAAGCT+CGG + tig0007216:6069-6088 None:intergenic 35.0%
GTTTATCCACGATCTAGTAA+AGG - tig0007216:6077-6096 Msa1345540:three_prime_UTR 35.0%
TCTAATCCTTTACTAGATCG+TGG + tig0007216:6086-6105 None:intergenic 35.0%
GAAACAAAAATGGAGTCACA+AGG - tig0007216:6124-6143 Msa1345540:three_prime_UTR 35.0%
TTCATTGTTGGAACTACTGA+CGG + tig0007216:6341-6360 None:intergenic 35.0%
CATCAGAACGAATTCATTGT+TGG + tig0007216:6353-6372 None:intergenic 35.0%
TCACGGAAAAATGAATTTCG+AGG - tig0007216:6540-6559 Msa1345540:CDS 35.0%
TGTTCCAATAACTCTTGAAC+AGG - tig0007216:6575-6594 Msa1345540:CDS 35.0%
ACTACCTGTTCAAGAGTTAT+TGG + tig0007216:6582-6601 None:intergenic 35.0%
TAATTATCTCCTGCTAATGC+TGG - tig0007216:6617-6636 Msa1345540:intron 35.0%
ATCGAGTACGAAATACAGAT+TGG + tig0007216:6676-6695 None:intergenic 35.0%
GCTTATCTGAGCTTATTTAG+TGG - tig0007216:6715-6734 Msa1345540:CDS 35.0%
! AAGTAAAGGTGTGACATTCA+TGG + tig0007216:7075-7094 None:intergenic 35.0%
! TACTTTTAACAACGGGTAAG+GGG - tig0007216:7090-7109 Msa1345540:intron 35.0%
! AACTTTTCTGCCTGTGTTAT+AGG - tig0007216:7175-7194 Msa1345540:intron 35.0%
! GTATACTTGTTGAAGGTTGA+AGG - tig0007216:7197-7216 Msa1345540:intron 35.0%
TACCAGATCCACTTCAAATA+AGG - tig0007216:7237-7256 Msa1345540:intron 35.0%
! TTCCTTATTTGAAGTGGATC+TGG + tig0007216:7242-7261 None:intergenic 35.0%
! AGTGCATTCCTTATTTGAAG+TGG + tig0007216:7248-7267 None:intergenic 35.0%
ACTTCAAATAAGGAATGCAC+TGG - tig0007216:7247-7266 Msa1345540:intron 35.0%
CGTAATATGCATGATAGTTG+CGG - tig0007216:7419-7438 Msa1345540:intron 35.0%
!! AATTAGTTCTGTGACTGAAC+AGG - tig0007216:7448-7467 Msa1345540:intron 35.0%
! CAATTAGTCCTCTAAAGAAC+TGG + tig0007216:7613-7632 None:intergenic 35.0%
! CAGTTCTTTAGAGGACTAAT+TGG - tig0007216:7611-7630 Msa1345540:intron 35.0%
! GTTCTTTAGAGGACTAATTG+GGG - tig0007216:7613-7632 Msa1345540:intron 35.0%
ATTGGCTGCAGTTAATTACT+TGG + tig0007216:7756-7775 None:intergenic 35.0%
!!! TATTTTAGTATCTGCCCATC+TGG - tig0007216:7833-7852 Msa1345540:intron 35.0%
! TTGCTTACAGTCAGAACTTT+TGG - tig0007216:7932-7951 Msa1345540:intron 35.0%
TTGCCCTGTATATTTCTCTA+AGG - tig0007216:7980-7999 Msa1345540:CDS 35.0%
TTGCAGTTAAAGAGACCAAT+GGG + tig0007216:8015-8034 None:intergenic 35.0%
ATTGCAGTTAAAGAGACCAA+TGG + tig0007216:8016-8035 None:intergenic 35.0%
! TAACTATGATGATGATGTGG+CGG - tig0007216:8158-8177 Msa1345540:intron 35.0%
ATTGAATACGTGAAACGACA+TGG - tig0007216:8194-8213 Msa1345540:intron 35.0%
!! CATCCATACTTGCTATATTC+CGG + tig0007216:8323-8342 None:intergenic 35.0%
GTAATACAAAAAACACTCGG+TGG - tig0007216:8354-8373 Msa1345540:intron 35.0%
TTGAACATGTGAAGCTAAGA+CGG + tig0007216:8380-8399 None:intergenic 35.0%
TTTAGGGACAACTTGACTAA+TGG - tig0007216:8445-8464 Msa1345540:intron 35.0%
TTAGGGACAACTTGACTAAT+GGG - tig0007216:8446-8465 Msa1345540:intron 35.0%
ATTATTTGCTTGGAAACTCC+AGG + tig0007216:8670-8689 None:intergenic 35.0%
TGGAGTTTCCAAGCAAATAA+TGG - tig0007216:8669-8688 Msa1345540:intron 35.0%
! CTTTTGTGATCTTTCTTCCA+TGG - tig0007216:8938-8957 Msa1345540:intron 35.0%
TTTGAAAACTCTGACAAACC+AGG + tig0007216:9088-9107 None:intergenic 35.0%
CAGATGAGTGAAAAGAATTC+CGG - tig0007216:9333-9352 Msa1345540:intron 35.0%
!! GATTTGATTTTTATTCCCCC+TGG - tig0007216:9363-9382 Msa1345540:CDS 35.0%
GAAATTAAGGCTTAATTCCG+TGG - tig0007216:9411-9430 Msa1345540:intron 35.0%
AAGAAACTATTGTAAGGGAG+AGG + tig0007216:9538-9557 None:intergenic 35.0%
AAAGCAGTATCTGCATGAAA+AGG + tig0007216:9589-9608 None:intergenic 35.0%
TTCATGCAGATACTGCTTTA+AGG - tig0007216:9590-9609 Msa1345540:CDS 35.0%
!! ATATATGTGAGAGGGCATTA+CGG - tig0007216:9624-9643 Msa1345540:CDS 35.0%
!! TTCTACTTTTGCACGAGTTA+AGG - tig0007216:9784-9803 Msa1345540:CDS 35.0%
!! TCTACTTTTGCACGAGTTAA+GGG - tig0007216:9785-9804 Msa1345540:CDS 35.0%
TTGCAGGTGTTTGAACTATT+TGG - tig0007216:9850-9869 Msa1345540:five_prime_UTR 35.0%
CTCGGATTCTGTCTTAATTG+TGG + tig0007216:6051-6070 None:intergenic 40.0%
! ATCCGCTTCTATCATTTTCG+CGG - tig0007216:6155-6174 Msa1345540:three_prime_UTR 40.0%
AACCGCGAAAATGATAGAAG+CGG + tig0007216:6160-6179 None:intergenic 40.0%
TGTCTTCAAAACGAGTTGCA+AGG + tig0007216:6204-6223 None:intergenic 40.0%
GAAGACACAAAAAAACTCGC+CGG - tig0007216:6217-6236 Msa1345540:three_prime_UTR 40.0%
GTGAGATTGAATTAGGGTTC+CGG + tig0007216:6239-6258 None:intergenic 40.0%
GCGAGTGTGAGATTGAATTA+GGG + tig0007216:6245-6264 None:intergenic 40.0%
TGCGAGTGTGAGATTGAATT+AGG + tig0007216:6246-6265 None:intergenic 40.0%
GACGTTGTTGGAAGTTAAAG+CGG + tig0007216:6287-6306 None:intergenic 40.0%
!!! CGTTGTTTTAGGTTCGATCA+CGG - tig0007216:6523-6542 Msa1345540:CDS 40.0%
TGAATTTCGAGGCAATGCTA+AGG - tig0007216:6551-6570 Msa1345540:CDS 40.0%
GTGATAAAACCAGCATTAGC+AGG + tig0007216:6629-6648 None:intergenic 40.0%
TGCTATATGTCAGTAGCACA+TGG + tig0007216:7045-7064 None:intergenic 40.0%
! ACTTTTAACAACGGGTAAGG+GGG - tig0007216:7091-7110 Msa1345540:intron 40.0%
GAAGTGGATCTGGTAAGAAT+CGG + tig0007216:7232-7251 None:intergenic 40.0%
TCAAATAAGGAATGCACTGG+AGG - tig0007216:7250-7269 Msa1345540:intron 40.0%
TTCCATAGTGACACTGCTAT+AGG + tig0007216:7347-7366 None:intergenic 40.0%
!! TGATGGAGTTCCTGTTTTTC+AGG - tig0007216:7563-7582 Msa1345540:intron 40.0%
GACTAATTGGGGAATGTTGA+GGG - tig0007216:7624-7643 Msa1345540:intron 40.0%
AATTAACTGCAGCCAATGCA+TGG - tig0007216:7759-7778 Msa1345540:intron 40.0%
TTTAAGCTGTTTGCCAGTCT+TGG + tig0007216:7802-7821 None:intergenic 40.0%
CTAAGGTTTGTCTAACCCAT+TGG - tig0007216:7997-8016 Msa1345540:intron 40.0%
GGTCTCTTTAACTGCAATTC+TGG - tig0007216:8018-8037 Msa1345540:intron 40.0%
CAATTCTGGTCCCTCTATTA+TGG - tig0007216:8032-8051 Msa1345540:intron 40.0%
ATTGGATGACAACTTGACAG+AGG + tig0007216:8135-8154 None:intergenic 40.0%
!! ATGGCTATAGAGTGCTGATA+TGG - tig0007216:8213-8232 Msa1345540:intron 40.0%
CTACCGGAATATAGCAAGTA+TGG - tig0007216:8317-8336 Msa1345540:intron 40.0%
! TTACTGCCAATCTGCACTTT+TGG + tig0007216:8498-8517 None:intergenic 40.0%
TAGTTAGGCATGTAGCTTGA+TGG - tig0007216:8552-8571 Msa1345540:intron 40.0%
! CGTTTGTTGGTTAAATGGAC+AGG - tig0007216:8597-8616 Msa1345540:intron 40.0%
TGGACAGGAAGATATTGAAC+AGG - tig0007216:8612-8631 Msa1345540:intron 40.0%
! AGGAACTATCTAAGGTTTCC+AGG - tig0007216:8632-8651 Msa1345540:intron 40.0%
! GGAACTATCTAAGGTTTCCA+GGG - tig0007216:8633-8652 Msa1345540:intron 40.0%
! TTGTTAGTCTGCTTGATACC+TGG - tig0007216:9067-9086 Msa1345540:intron 40.0%
! CTTTTCACTCATCTGCAATG+TGG + tig0007216:9328-9347 None:intergenic 40.0%
TGAGTGAAAAGAATTCCGGA+TGG - tig0007216:9337-9356 Msa1345540:intron 40.0%
GAGTGAAAAGAATTCCGGAT+GGG - tig0007216:9338-9357 Msa1345540:intron 40.0%
! TTAGCTTAAGTTTGCTCCCA+CGG + tig0007216:9431-9450 None:intergenic 40.0%
!! TATATGTGAGAGGGCATTAC+GGG - tig0007216:9625-9644 Msa1345540:CDS 40.0%
ATTTCAGTTTAAGGGTCCCA+TGG - tig0007216:9656-9675 Msa1345540:CDS 40.0%
CTCAAAAATCGCAGTTCCAT+GGG + tig0007216:9675-9694 None:intergenic 40.0%
ACTCAAAAATCGCAGTTCCA+TGG + tig0007216:9676-9695 None:intergenic 40.0%
TTAAGGGAGGTCTATGGATA+TGG - tig0007216:9801-9820 Msa1345540:exon 40.0%
GAGGTCTATGGATATGGATT+TGG - tig0007216:9807-9826 Msa1345540:exon 40.0%
CAGGTGTTTGAACTATTTGG+AGG - tig0007216:9853-9872 Msa1345540:five_prime_UTR 40.0%
AAATGGAGTCACAAGGACAG+TGG - tig0007216:6131-6150 Msa1345540:three_prime_UTR 45.0%
! CAAGGTGGTTACAGTGTTGA+TGG + tig0007216:6186-6205 None:intergenic 45.0%
CTTCAAAACGAGTTGCAAGG+TGG + tig0007216:6201-6220 None:intergenic 45.0%
GTTGTTGGAAGTTAAAGCGG+CGG + tig0007216:6284-6303 None:intergenic 45.0%
GGAACTACTGACGGTGTAAA+CGG + tig0007216:6332-6351 None:intergenic 45.0%
GCGAAAGCAAAGCAATCCAA+TGG + tig0007216:6398-6417 None:intergenic 45.0%
GGTGTGACATTCATGGTTGT+AGG + tig0007216:7068-7087 None:intergenic 45.0%
! AATGCACTGGAGGTTAGTTC+CGG - tig0007216:7260-7279 Msa1345540:CDS 45.0%
! GTCCTATAGCAGTGTCACTA+TGG - tig0007216:7342-7361 Msa1345540:intron 45.0%
ATCAAAACCTTCCTTGCTGG+CGG + tig0007216:7547-7566 None:intergenic 45.0%
TCCATCAAAACCTTCCTTGC+TGG + tig0007216:7550-7569 None:intergenic 45.0%
GGACTAATTGGGGAATGTTG+AGG - tig0007216:7623-7642 Msa1345540:intron 45.0%
!! ACACCAACTTAATGGGCTAC+CGG - tig0007216:8301-8320 Msa1345540:intron 45.0%
ATTCCGGTAGCCCATTAAGT+TGG + tig0007216:8307-8326 None:intergenic 45.0%
! GGATGACCAAAAGTGCAGAT+TGG - tig0007216:8489-8508 Msa1345540:intron 45.0%
TGCAGATTGGCAGTAAGAGA+GGG - tig0007216:8502-8521 Msa1345540:intron 45.0%
! TCCAGGGTATCTAAAAGTCC+TGG - tig0007216:8649-8668 Msa1345540:intron 45.0%
! TCCAGGACTTTTAGATACCC+TGG + tig0007216:8653-8672 None:intergenic 45.0%
!! TTGAGAACGGCTTTTTCCAG+GGG + tig0007216:9382-9401 None:intergenic 45.0%
!! GTTGAGAACGGCTTTTTCCA+GGG + tig0007216:9383-9402 None:intergenic 45.0%
!! TGTTGAGAACGGCTTTTTCC+AGG + tig0007216:9384-9403 None:intergenic 45.0%
! GTTGACTCATTCTTGTCAGC+TGG - tig0007216:9499-9518 Msa1345540:CDS 45.0%
! ACTTTTGCACGAGTTAAGGG+AGG - tig0007216:9788-9807 Msa1345540:CDS 45.0%
ACTACTGACGGTGTAAACGG+AGG + tig0007216:6329-6348 None:intergenic 50.0%
GTTCTGATGTCCGATGCTGA+AGG - tig0007216:6364-6383 Msa1345540:intron 50.0%
GGACTTAGCACCTTCAGCAT+CGG + tig0007216:6377-6396 None:intergenic 50.0%
!! GCTGAAGGTGCTAAGTCCAT+TGG - tig0007216:6379-6398 Msa1345540:intron 50.0%
GGAAAGCTTCAGCGTCTTCT+TGG + tig0007216:6420-6439 None:intergenic 50.0%
AGAGGAACGTTACCTGAGCA+AGG + tig0007216:6441-6460 None:intergenic 50.0%
TATGCATGATAGTTGCGGCG+TGG - tig0007216:7424-7443 Msa1345540:intron 50.0%
ATGCATGATAGTTGCGGCGT+GGG - tig0007216:7425-7444 Msa1345540:intron 50.0%
!! GCCAGCAAGGAAGGTTTTGA+TGG - tig0007216:7546-7565 Msa1345540:intron 50.0%
GGCAGTCTCCAGTTCTTTAG+AGG - tig0007216:7602-7621 Msa1345540:intron 50.0%
ATTGGGGAATGTTGAGGGTG+TGG - tig0007216:7629-7648 Msa1345540:intron 50.0%
! TTGGGGAATGTTGAGGGTGT+GGG - tig0007216:7630-7649 Msa1345540:intron 50.0%
GTGCAGATTGGCAGTAAGAG+AGG - tig0007216:8501-8520 Msa1345540:intron 50.0%
!! TGAGAACGGCTTTTTCCAGG+GGG + tig0007216:9381-9400 None:intergenic 50.0%
TTGTCAGCTGGTGAGATGTC+AGG - tig0007216:9511-9530 Msa1345540:CDS 50.0%
CACGAGTTAAGGGAGGTCTA+TGG - tig0007216:9795-9814 Msa1345540:exon 50.0%
AGTTAAAGCGGCGGCGAAAG+CGG + tig0007216:6275-6294 None:intergenic 55.0%
GAGGGATTTGGCGACGTTGT+TGG + tig0007216:6299-6318 None:intergenic 55.0%
GACGGTGTAAACGGAGGTTC+CGG + tig0007216:6323-6342 None:intergenic 55.0%
CGCTGAAGCTTTCCTTGCTC+AGG - tig0007216:6426-6445 Msa1345540:three_prime_UTR 55.0%
TTAAAGCGGCGGCGAAAGCG+GGG + tig0007216:6273-6292 None:intergenic 60.0%
GTTAAAGCGGCGGCGAAAGC+GGG + tig0007216:6274-6293 None:intergenic 60.0%
AACGTCGCCAAATCCCTCGC+CGG - tig0007216:6301-6320 Msa1345540:three_prime_UTR 60.0%
GTAAACGGAGGTTCCGGCGA+GGG + tig0007216:6317-6336 None:intergenic 60.0%
TGTAAACGGAGGTTCCGGCG+AGG + tig0007216:6318-6337 None:intergenic 60.0%
! GGAATGTTGAGGGTGTGGGC+AGG - tig0007216:7634-7653 Msa1345540:intron 60.0%
GGAGGTTCCGGCGAGGGATT+TGG + tig0007216:6311-6330 None:intergenic 65.0%
TCAGCTCAGAGCCGCCAGCA+AGG - tig0007216:7533-7552 Msa1345540:intron 65.0%
CTCAGAGCCGCCAGCAAGGA+AGG - tig0007216:7537-7556 Msa1345540:intron 65.0%
AGCGGCGGCGAAAGCGGGGT+TGG + tig0007216:6269-6288 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0007216 gene 6030 9913 6030 ID=Msa1345540;Name=Msa1345540
tig0007216 mRNA 6030 9913 6030 ID=Msa1345540-mRNA-1;Parent=Msa1345540;Name=Msa1345540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|0.87|0.77|9|410|252
tig0007216 exon 6030 6344 6030 ID=Msa1345540-mRNA-1:exon:5048;Parent=Msa1345540-mRNA-1
tig0007216 exon 6423 6607 6423 ID=Msa1345540-mRNA-1:exon:5047;Parent=Msa1345540-mRNA-1
tig0007216 exon 6700 6735 6700 ID=Msa1345540-mRNA-1:exon:5046;Parent=Msa1345540-mRNA-1
tig0007216 exon 7253 7324 7253 ID=Msa1345540-mRNA-1:exon:5045;Parent=Msa1345540-mRNA-1
tig0007216 exon 7942 8001 7942 ID=Msa1345540-mRNA-1:exon:5044;Parent=Msa1345540-mRNA-1
tig0007216 exon 8359 8406 8359 ID=Msa1345540-mRNA-1:exon:5043;Parent=Msa1345540-mRNA-1
tig0007216 exon 8672 8746 8672 ID=Msa1345540-mRNA-1:exon:5042;Parent=Msa1345540-mRNA-1
tig0007216 exon 9347 9409 9347 ID=Msa1345540-mRNA-1:exon:5041;Parent=Msa1345540-mRNA-1
tig0007216 exon 9496 9913 9496 ID=Msa1345540-mRNA-1:exon:5040;Parent=Msa1345540-mRNA-1
tig0007216 five_prime_UTR 9811 9913 9811 ID=Msa1345540-mRNA-1:five_prime_utr;Parent=Msa1345540-mRNA-1
tig0007216 CDS 9496 9810 9496 ID=Msa1345540-mRNA-1:cds;Parent=Msa1345540-mRNA-1
tig0007216 CDS 9347 9409 9347 ID=Msa1345540-mRNA-1:cds;Parent=Msa1345540-mRNA-1
tig0007216 CDS 8672 8746 8672 ID=Msa1345540-mRNA-1:cds;Parent=Msa1345540-mRNA-1
tig0007216 CDS 8359 8406 8359 ID=Msa1345540-mRNA-1:cds;Parent=Msa1345540-mRNA-1
tig0007216 CDS 7942 8001 7942 ID=Msa1345540-mRNA-1:cds;Parent=Msa1345540-mRNA-1
tig0007216 CDS 7253 7324 7253 ID=Msa1345540-mRNA-1:cds;Parent=Msa1345540-mRNA-1
tig0007216 CDS 6700 6735 6700 ID=Msa1345540-mRNA-1:cds;Parent=Msa1345540-mRNA-1
tig0007216 CDS 6518 6607 6518 ID=Msa1345540-mRNA-1:cds;Parent=Msa1345540-mRNA-1
tig0007216 three_prime_UTR 6423 6517 6423 ID=Msa1345540-mRNA-1:three_prime_utr;Parent=Msa1345540-mRNA-1
tig0007216 three_prime_UTR 6030 6344 6030 ID=Msa1345540-mRNA-1:three_prime_utr;Parent=Msa1345540-mRNA-1
Gene Sequence

>Msa1345540

ATGGAGTCACAAGGACAGTGGAATCCGCTTCTATCATTTTCGCGGTTCATCCATCAACACTGTAACCACCTTGCAACTCGTTTTGAAGACACAAAAAAACTCGCCGGAACCCTAATTCAATCTCACACTCGCACCAACCCCGCTTTCGCCGCCGCTTTAACTTCCAACAACGTCGCCAAATCCCTCGCCGGAACCTCCGTTTACACCGTCAGTAGTTCCAACAATGAATTCGTTCTGATGTCCGATGCTGAAGGTGCTAAGTCCATTGGATTGCTTTGCTTTCGCCAAGAAGACGCTGAAGCTTTCCTTGCTCAGGTTCGATCACGGAAAAATGAATTTCGAGGCAATGCTAAGGTTGTTCCAATAACTCTTGAACAGGTATACTTGTTGAAGGTTGAAGGTATTGCATTCCGATTCTTACCAGATCCACTTCAAATAAGGAATGCACTGGAGCTCAGAGCCGCCAGCAAGGAAGGTTTTGATGGAGTTCCTGTTTTTCAGTCAGAACTTTTGGTTGTGAAGAAGAAGAATAAACGTTATTGCCCTGTATATTTCTCTAAGGAAGATATTGAACAGGAACTATCTAAGGTTTCCAGGGTATCTAAAAGTCCTGGAGTTTCCAAGCAAATAATGGTTGGTAGCTTCGAAGATGTACTTAAAAAAATGGAGATGAGTGAAAAGAATTCCGGATGGGATGATTTGATTTTTATTCCCCCTGGAAAAAGCCGTTCTCAACATATACAAGAAATTAAGGCTTAA

Protein sequence

>Msa1345540

MESQGQWNPLLSFSRFIHQHCNHLATRFEDTKKLAGTLIQSHTRTNPAFAAALTSNNVAKSLAGTSVYTVSSSNNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVRSRKNEFRGNAKVVPITLEQVYLLKVEGIAFRFLPDPLQIRNALELRAASKEGFDGVPVFQSELLVVKKKNKRYCPVYFSKEDIEQELSKVSRVSKSPGVSKQIMVGSFEDVLKKMEMSEKNSGWDDLIFIPPGKSRSQHIQEIKA*