Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528950 | KEH42753.1 | 96.858 | 732 | 23 | 0 | 1 | 732 | 1 | 732 | 0.0 | 1456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528950 | sp|Q66GN3|NPGR2_ARATH | 51.230 | 732 | 336 | 8 | 14 | 732 | 16 | 739 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528950 | A0A072VMT9 | 96.858 | 732 | 23 | 0 | 1 | 732 | 1 | 732 | 0.0 | 1456 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077400 | Msa0528950 | 0.938461 | 6.479092e-99 | -8.615850e-47 |
| Msa0080090 | Msa0528950 | 0.804645 | 1.955318e-49 | -8.615850e-47 |
| Msa0088940 | Msa0528950 | 0.804109 | 2.529249e-49 | -8.615850e-47 |
| Msa0142220 | Msa0528950 | 0.814986 | 1.164773e-51 | -8.615850e-47 |
| Msa0170030 | Msa0528950 | 0.812324 | 4.489096e-51 | -8.615850e-47 |
| Msa0204840 | Msa0528950 | 0.817533 | 3.138309e-52 | -8.615850e-47 |
| Msa0216910 | Msa0528950 | 0.807070 | 6.048420e-50 | -8.615850e-47 |
| Msa0224780 | Msa0528950 | 0.810571 | 1.079053e-50 | -8.615850e-47 |
| Msa0225100 | Msa0528950 | 0.808590 | 2.874307e-50 | -8.615850e-47 |
| Msa0225110 | Msa0528950 | 0.806941 | 6.440045e-50 | -8.615850e-47 |
| Msa0229590 | Msa0528950 | 0.800414 | 1.457187e-48 | -8.615850e-47 |
| Msa0367870 | Msa0528950 | 0.822073 | 2.879606e-53 | -8.615850e-47 |
| Msa0386090 | Msa0528950 | 0.831950 | 1.248237e-55 | -8.615850e-47 |
| Msa0411390 | Msa0528950 | 0.812363 | 4.402488e-51 | -8.615850e-47 |
| Msa0436800 | Msa0528950 | 0.801223 | 9.963928e-49 | -8.615850e-47 |
| Msa0455760 | Msa0528950 | 0.811336 | 7.365627e-51 | -8.615850e-47 |
| Msa0244640 | Msa0528950 | 0.800188 | 1.620116e-48 | -8.615850e-47 |
| Msa0266180 | Msa0528950 | 0.810350 | 1.204452e-50 | -8.615850e-47 |
| Msa0266200 | Msa0528950 | 0.804375 | 2.226948e-49 | -8.615850e-47 |
| Msa0287740 | Msa0528950 | 0.803280 | 3.759290e-49 | -8.615850e-47 |
| Msa0290720 | Msa0528950 | 0.812555 | 3.997269e-51 | -8.615850e-47 |
| Msa0363530 | Msa0528950 | 0.811957 | 5.397516e-51 | -8.615850e-47 |
| Msa0363790 | Msa0528950 | 0.820193 | 7.804208e-53 | -8.615850e-47 |
| Msa0528950 | Msa0529890 | 0.801127 | 1.042368e-48 | -8.615850e-47 |
| Msa0528950 | Msa0534880 | 0.816880 | 4.400986e-52 | -8.615850e-47 |
| Msa0528950 | Msa0537500 | 0.800144 | 1.653948e-48 | -8.615850e-47 |
| Msa0528950 | Msa0548470 | 0.802177 | 6.349737e-49 | -8.615850e-47 |
| Msa0528950 | Msa0559500 | 0.804757 | 1.853601e-49 | -8.615850e-47 |
| Msa0528950 | Msa0600700 | 0.806338 | 8.634367e-50 | -8.615850e-47 |
| Msa0528950 | Msa0625190 | 0.818544 | 1.854846e-52 | -8.615850e-47 |
| Msa0528950 | Msa0625720 | 0.800946 | 1.135301e-48 | -8.615850e-47 |
| Msa0528950 | Msa0631330 | 0.813336 | 2.694968e-51 | -8.615850e-47 |
| Msa0528950 | Msa0661650 | 0.842161 | 3.062269e-58 | -8.615850e-47 |
| Msa0528950 | Msa0681250 | 0.803111 | 4.074657e-49 | -8.615850e-47 |
| Msa0528950 | Msa0708310 | 0.800424 | 1.450839e-48 | -8.615850e-47 |
| Msa0528950 | Msa0745610 | 0.825685 | 4.096168e-54 | -8.615850e-47 |
| Msa0528950 | Msa0861850 | 0.809575 | 1.768047e-50 | -8.615850e-47 |
| Msa0528950 | Msa0901400 | 0.822894 | 1.855676e-53 | -8.615850e-47 |
| Msa0528950 | Msa0927090 | 0.817832 | 2.687867e-52 | -8.615850e-47 |
| Msa0528950 | Msa0927310 | 0.834691 | 2.589763e-56 | -8.615850e-47 |
| Msa0528950 | Msa0936530 | 0.809336 | 1.989799e-50 | -8.615850e-47 |
| Msa0528950 | Msa0961360 | 0.813467 | 2.522836e-51 | -8.615850e-47 |
| Msa0528950 | Msa0965610 | 0.842092 | 3.192890e-58 | -8.615850e-47 |
| Msa0528950 | Msa0992640 | 0.803068 | 4.158380e-49 | -8.615850e-47 |
| Msa0528950 | Msa0992680 | 0.812844 | 3.455629e-51 | -8.615850e-47 |
| Msa0528950 | Msa0999290 | 0.834126 | 3.588995e-56 | -8.615850e-47 |
| Msa0528950 | Msa1003620 | 0.808308 | 3.300898e-50 | -8.615850e-47 |
| Msa0528950 | Msa1016320 | 0.809584 | 1.760194e-50 | -8.615850e-47 |
| Msa0528950 | Msa1019000 | 0.835932 | 1.258322e-56 | -8.615850e-47 |
| Msa0528950 | Msa1019150 | 0.834103 | 3.636705e-56 | -8.615850e-47 |
| Msa0528950 | Msa1037780 | 0.803298 | 3.726365e-49 | -8.615850e-47 |
| Msa0528950 | Msa1066670 | 0.810831 | 9.478096e-51 | -8.615850e-47 |
| Msa0528950 | Msa1075650 | 0.803256 | 3.802808e-49 | -8.615850e-47 |
| Msa0528950 | Msa1081330 | 0.809371 | 1.956127e-50 | -8.615850e-47 |
| Msa0528950 | Msa1121490 | 0.806943 | 6.435266e-50 | -8.615850e-47 |
| Msa0528950 | Msa1122520 | 0.829089 | 6.255905e-55 | -8.615850e-47 |
| Msa0528950 | Msa1147740 | 0.846819 | 1.709525e-59 | -8.615850e-47 |
| Msa0528950 | Msa1155170 | -0.808219 | 3.448611e-50 | -8.615850e-47 |
| Msa0528950 | Msa1225230 | 0.803253 | 3.807379e-49 | -8.615850e-47 |
| Msa0528950 | Msa1238820 | 0.810136 | 1.339187e-50 | -8.615850e-47 |
| Msa0528950 | Msa1269480 | 0.802517 | 5.403132e-49 | -8.615850e-47 |
| Msa0528950 | Msa1277150 | 0.800104 | 1.685256e-48 | -8.615850e-47 |
| Msa0528950 | Msa1307210 | 0.803825 | 2.897096e-49 | -8.615850e-47 |
| Msa0528950 | Msa1325060 | 0.841135 | 5.710686e-58 | -8.615850e-47 |
| Msa0528950 | Msa1392240 | 0.825855 | 3.732507e-54 | -8.615850e-47 |
| Msa0528950 | Msa1397740 | 0.803188 | 3.928151e-49 | -8.615850e-47 |
| Msa0528950 | Msa1410680 | 0.801911 | 7.201798e-49 | -8.615850e-47 |
| Msa0528950 | Msa1412540 | 0.810540 | 1.095412e-50 | -8.615850e-47 |
| Msa0528950 | Msa1440560 | 0.842417 | 2.619726e-58 | -8.615850e-47 |
| Msa0528950 | Msa1466540 | 0.800894 | 1.163439e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528950 | MtrunA17_Chr1g0187271 | 96.858 | 732 | 23 | 0 | 1 | 732 | 1 | 732 | 0.0 | 1456 |
| Msa0528950 | MtrunA17_Chr1g0183461 | 58.865 | 705 | 277 | 6 | 35 | 732 | 15 | 713 | 0.0 | 801 |
| Msa0528950 | MtrunA17_Chr7g0261581 | 56.061 | 726 | 303 | 7 | 16 | 732 | 10 | 728 | 0.0 | 771 |
| Msa0528950 | MtrunA17_Chr1g0152501 | 42.105 | 722 | 396 | 9 | 24 | 731 | 3 | 716 | 3.76e-176 | 521 |
| Msa0528950 | MtrunA17_Chr5g0409291 | 44.857 | 593 | 311 | 7 | 41 | 627 | 8 | 590 | 4.02e-165 | 489 |
| Msa0528950 | MtrunA17_Chr8g0369551 | 43.771 | 594 | 316 | 8 | 41 | 627 | 3 | 585 | 1.97e-162 | 482 |
| Msa0528950 | MtrunA17_Chr5g0409281 | 44.340 | 106 | 53 | 2 | 628 | 731 | 9 | 110 | 2.12e-22 | 92.8 |
| Msa0528950 | MtrunA17_Chr8g0369541 | 40.517 | 116 | 62 | 3 | 618 | 731 | 11 | 121 | 8.54e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528950 | AT4G28600.1 | 51.230 | 732 | 336 | 8 | 14 | 732 | 16 | 739 | 0.0 | 693 |
| Msa0528950 | AT4G28600.2 | 51.230 | 732 | 336 | 8 | 14 | 732 | 16 | 739 | 0.0 | 693 |
| Msa0528950 | AT4G28600.3 | 50.882 | 737 | 336 | 9 | 14 | 732 | 16 | 744 | 0.0 | 688 |
| Msa0528950 | AT2G43040.2 | 44.622 | 688 | 363 | 9 | 52 | 731 | 23 | 700 | 0.0 | 548 |
| Msa0528950 | AT2G43040.1 | 44.622 | 688 | 363 | 9 | 52 | 731 | 23 | 700 | 0.0 | 548 |
| Msa0528950 | AT1G27460.3 | 39.917 | 719 | 389 | 12 | 24 | 731 | 3 | 689 | 2.25e-157 | 472 |
| Msa0528950 | AT1G27460.1 | 40.056 | 719 | 392 | 12 | 24 | 731 | 3 | 693 | 7.45e-157 | 471 |
| Msa0528950 | AT1G27460.2 | 39.892 | 554 | 305 | 8 | 24 | 566 | 3 | 539 | 1.23e-119 | 370 |
Find 110 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCTCTCCATTGTTTC+TGG | 0.103677 | 4_1:-1945968 | None:intergenic |
| CTTTCTATATTGCTATTAAA+AGG | 0.121491 | 4_1:+1944033 | Msa0528950:five_prime_UTR |
| TCAATAGAGCCTGCTGTAAA+AGG | 0.191914 | 4_1:-1944105 | None:intergenic |
| TATTTGTGGGTGAATTTAAT+AGG | 0.213744 | 4_1:+1943877 | Msa0528950:five_prime_UTR |
| TTGATAAATGAAATAGTAAA+AGG | 0.223205 | 4_1:+1948004 | Msa0528950:three_prime_UTR |
| AAGATGTTATCTTATCATTT+AGG | 0.224670 | 4_1:+1945660 | Msa0528950:CDS |
| GCCTCTTCTATGTTGTTTCT+TGG | 0.226248 | 4_1:-1945821 | None:intergenic |
| TTAGCATTAGAAGGGAATTA+AGG | 0.229003 | 4_1:+1944601 | Msa0528950:CDS |
| CTTTAGATCAAAGCGGAAAA+TGG | 0.229271 | 4_1:+1946545 | Msa0528950:CDS |
| ACTTCTCTACAAAGCTGATT+TGG | 0.244443 | 4_1:+1947834 | Msa0528950:CDS |
| TTGTGGACTGCGTTTATTAT+TGG | 0.286116 | 4_1:-1945142 | None:intergenic |
| AAATCTAGGAACTGCAAATA+AGG | 0.308744 | 4_1:+1946681 | Msa0528950:CDS |
| AAAAGGTGTTATTGTCTAAA+GGG | 0.350616 | 4_1:-1947928 | None:intergenic |
| CAAACTCTTGGAAGGTTTCA+AGG | 0.355060 | 4_1:+1945243 | Msa0528950:CDS |
| CTTCTCTACAAAGCTGATTT+GGG | 0.359543 | 4_1:+1947835 | Msa0528950:CDS |
| ATCAAACTTCCCACATGGTT+TGG | 0.362172 | 4_1:-1947691 | None:intergenic |
| TGCAATCTAGAAGCGGAATA+AGG | 0.365185 | 4_1:-1946969 | None:intergenic |
| GCTATTGCAAATTGTTTACT+AGG | 0.372778 | 4_1:+1946223 | Msa0528950:CDS |
| GGAAAGCCTTGCTTTATCAT+TGG | 0.376906 | 4_1:+1945681 | Msa0528950:CDS |
| GAAGACTAGAAATGGAAGTT+TGG | 0.389941 | 4_1:+1946865 | Msa0528950:CDS |
| TAGGAAGCTAGAGCCTTGTT+AGG | 0.391721 | 4_1:+1945006 | Msa0528950:intron |
| CATTGTTACACTTTATTTGT+GGG | 0.400907 | 4_1:+1943864 | Msa0528950:five_prime_UTR |
| GGAAGACTTGAGTATCAAAA+AGG | 0.405055 | 4_1:+1945027 | Msa0528950:CDS |
| TCTTTCGCTCTGAGTGTTTG+TGG | 0.407566 | 4_1:+1945905 | Msa0528950:CDS |
| GCTAAATCATTGCAAACTCT+TGG | 0.409763 | 4_1:+1945231 | Msa0528950:CDS |
| TCGCGACAGAAGACTAGAAA+TGG | 0.422836 | 4_1:+1946857 | Msa0528950:CDS |
| AGGCGAGCATATAGTTGCTT+TGG | 0.422943 | 4_1:+1946027 | Msa0528950:CDS |
| TAGAACTGCTTCCGGAGTTA+TGG | 0.430356 | 4_1:+1945618 | Msa0528950:CDS |
| GAATTCAGTATCTATAATAT+AGG | 0.437219 | 4_1:+1944126 | Msa0528950:five_prime_UTR |
| GCTGCACTTCATGTATTTGA+AGG | 0.441433 | 4_1:+1945060 | Msa0528950:CDS |
| TCATCTGCATGGTACAATCT+TGG | 0.445464 | 4_1:+1947811 | Msa0528950:CDS |
| TTTCTATATTGCTATTAAAA+GGG | 0.452062 | 4_1:+1944034 | Msa0528950:five_prime_UTR |
| CATCAGAGTCCCTTGCAACT+AGG | 0.452176 | 4_1:+1944682 | Msa0528950:CDS |
| TCATTGTTACACTTTATTTG+TGG | 0.457329 | 4_1:+1943863 | Msa0528950:five_prime_UTR |
| CGCAAAGAAACTGATTAAGC+TGG | 0.463190 | 4_1:+1946429 | Msa0528950:CDS |
| AATCAATAACACTAAAGTAT+AGG | 0.465135 | 4_1:-1943939 | None:intergenic |
| GCATGGAAAATGTAATCAAA+TGG | 0.470470 | 4_1:+1946198 | Msa0528950:CDS |
| AAATGCTGTAGAACTGCTTC+CGG | 0.471565 | 4_1:+1945610 | Msa0528950:CDS |
| ATCAGAGTCCCTTGCAACTA+GGG | 0.473346 | 4_1:+1944683 | Msa0528950:CDS |
| TGATAAAGTGTGTGTGTTCA+AGG | 0.476700 | 4_1:+1944628 | Msa0528950:CDS |
| TTTAGATCAAAGCGGAAAAT+GGG | 0.477721 | 4_1:+1946546 | Msa0528950:CDS |
| TAACATTTAAGTTTAACTCT+AGG | 0.482370 | 4_1:+1944062 | Msa0528950:five_prime_UTR |
| TATTGTCTAAAGGGTTCAAT+GGG | 0.486431 | 4_1:-1947919 | None:intergenic |
| TTATTGTCTAAAGGGTTCAA+TGG | 0.487445 | 4_1:-1947920 | None:intergenic |
| ATCAACTGCAAGAATACAAA+AGG | 0.489122 | 4_1:+1945718 | Msa0528950:CDS |
| CAATAGAGCCTGCTGTAAAA+GGG | 0.490928 | 4_1:-1944104 | None:intergenic |
| AATCATTGCAAACTCTTGGA+AGG | 0.491758 | 4_1:+1945235 | Msa0528950:CDS |
| GCTCTTTGTTACTGCGGTGA+AGG | 0.494777 | 4_1:+1946007 | Msa0528950:CDS |
| ACAGCATGTATCGACATAGA+AGG | 0.498706 | 4_1:-1945177 | None:intergenic |
| AACTGCAAATAAGGTTATGA+AGG | 0.507160 | 4_1:+1946690 | Msa0528950:CDS |
| AGATTTAGCAAGACAAACTT+CGG | 0.507247 | 4_1:-1946934 | None:intergenic |
| CAAAGATTAAGAACAATGTA+AGG | 0.511122 | 4_1:-1946361 | None:intergenic |
| GAATCATCTCTGCGTGAAAG+TGG | 0.518712 | 4_1:+1944789 | Msa0528950:CDS |
| GCTTGTGTTCTGAGAAAACT+TGG | 0.530375 | 4_1:+1947721 | Msa0528950:CDS |
| AAACACTCAGAGCGAAAGAA+AGG | 0.530554 | 4_1:-1945901 | None:intergenic |
| CAAAGCGGAAAATGGGATCA+AGG | 0.534119 | 4_1:+1946553 | Msa0528950:CDS |
| GCTTTAATGCATCAGTGAGA+AGG | 0.537010 | 4_1:-1947774 | None:intergenic |
| CTCGGTATACTCAGATTGCA+TGG | 0.538524 | 4_1:+1946084 | Msa0528950:CDS |
| ATTACAACTCATAGAAGAAG+TGG | 0.541602 | 4_1:-1943984 | None:intergenic |
| GCTTCTAGATTGCACTCCAC+AGG | 0.542659 | 4_1:+1946978 | Msa0528950:CDS |
| AATCTGCATTACCAGAAGGT+TGG | 0.547530 | 4_1:+1945543 | Msa0528950:CDS |
| CCACTTCGCTCTCAGTTGAA+CGG | 0.557614 | 4_1:+1945788 | Msa0528950:CDS |
| GCTGTAAAAGGGAAAGAGAA+TGG | 0.560139 | 4_1:-1944093 | None:intergenic |
| AGCTTCTGAGAAATTGATGA+AGG | 0.560809 | 4_1:+1946330 | Msa0528950:CDS |
| ATACTCAAGTCTTCCTAACA+AGG | 0.561665 | 4_1:-1945019 | None:intergenic |
| GGAATTACTTCCAGAAACAA+TGG | 0.562728 | 4_1:+1945958 | Msa0528950:CDS |
| CTGAATAGTCCCTAGTTGCA+AGG | 0.563955 | 4_1:-1944692 | None:intergenic |
| AGTAAAAGGAGAAAGTACTA+AGG | 0.565887 | 4_1:+1948018 | Msa0528950:three_prime_UTR |
| TGATTTGGGAACATCAGCAT+TGG | 0.571232 | 4_1:+1947849 | Msa0528950:CDS |
| AGGTGAAAATGATACAAAGT+TGG | 0.571771 | 4_1:+1944743 | Msa0528950:CDS |
| GACACTAGCTCAACAAGTTG+AGG | 0.581000 | 4_1:+1945937 | Msa0528950:CDS |
| GGCATCATGCCACCGTGACA+AGG | 0.582269 | 4_1:-1946913 | None:intergenic |
| CATCTTGAGGTGAGCCTGCG+AGG | 0.583442 | 4_1:-1945643 | None:intergenic |
| AAGTGGTTATTTGAACTATG+AGG | 0.588319 | 4_1:+1944806 | Msa0528950:CDS |
| TTTGTACAGCGGCTACGAAG+CGG | 0.590359 | 4_1:+1945757 | Msa0528950:CDS |
| AAACTGATTAAGCTGGAAGG+TGG | 0.590664 | 4_1:+1946436 | Msa0528950:CDS |
| AAGATTCCAATGATAAAGCA+AGG | 0.591180 | 4_1:-1945687 | None:intergenic |
| AGTGGTTATTCATCTCGTCC+AGG | 0.592091 | 4_1:+1944723 | Msa0528950:CDS |
| AATGATAAGATAACATCTTG+AGG | 0.602817 | 4_1:-1945656 | None:intergenic |
| GGTTTACTTTATGAAGCAAG+AGG | 0.603995 | 4_1:+1947619 | Msa0528950:intron |
| TGAATAGTCCCTAGTTGCAA+GGG | 0.604887 | 4_1:-1944691 | None:intergenic |
| GTTGAATCTGCATTACCAGA+AGG | 0.604979 | 4_1:+1945539 | Msa0528950:CDS |
| CCGGAGTTATGGAACCTCGC+AGG | 0.605747 | 4_1:+1945629 | Msa0528950:CDS |
| AACAAGGTTTGTGTCGAAGA+CGG | 0.611581 | 4_1:+1946142 | Msa0528950:CDS |
| AAGGCAATTTCTCAGATGCA+TGG | 0.611767 | 4_1:+1946181 | Msa0528950:CDS |
| GCCAAGAAACAACATAGAAG+AGG | 0.614198 | 4_1:+1945820 | Msa0528950:CDS |
| TTCAACTGAGAGCGAAGTGG+AGG | 0.614284 | 4_1:-1945785 | None:intergenic |
| CCTGCGAGGTTCCATAACTC+CGG | 0.616519 | 4_1:-1945629 | None:intergenic |
| GAAGGTGGGTCGAGTATTAG+CGG | 0.617728 | 4_1:+1946451 | Msa0528950:CDS |
| GACTATTCAGCATCAGCAAG+TGG | 0.619590 | 4_1:+1944705 | Msa0528950:CDS |
| ACTCTCGCTCTTTGTTACTG+CGG | 0.620307 | 4_1:+1946001 | Msa0528950:CDS |
| AACTGATTAAGCTGGAAGGT+GGG | 0.623802 | 4_1:+1946437 | Msa0528950:CDS |
| GATAAAGTGTGTGTGTTCAA+GGG | 0.624345 | 4_1:+1944629 | Msa0528950:CDS |
| TTGATATCAAACTTCCCACA+TGG | 0.625865 | 4_1:-1947696 | None:intergenic |
| ATGTGTACACAGCCTTGTCA+CGG | 0.636930 | 4_1:+1946901 | Msa0528950:CDS |
| TGTGTTCTGAGAAAACTTGG+TGG | 0.639416 | 4_1:+1947724 | Msa0528950:CDS |
| GAAGGCACTGAATCGCGTTG+TGG | 0.640136 | 4_1:-1945159 | None:intergenic |
| AAGAAACTGATTAAGCTGGA+AGG | 0.640610 | 4_1:+1946433 | Msa0528950:CDS |
| TTACAACTCATAGAAGAAGT+GGG | 0.645249 | 4_1:-1943983 | None:intergenic |
| ACACAACAAACTCATCTGCA+TGG | 0.646543 | 4_1:+1947800 | Msa0528950:CDS |
| CCGTTCAACTGAGAGCGAAG+TGG | 0.647279 | 4_1:-1945788 | None:intergenic |
| AGATATTGAGCCAAACCATG+TGG | 0.648392 | 4_1:+1947681 | Msa0528950:CDS |
| GCTAAGATTCAGATTGCACA+AGG | 0.653500 | 4_1:+1946595 | Msa0528950:CDS |
| TGTGGAGTGCAATCTAGAAG+CGG | 0.658093 | 4_1:-1946976 | None:intergenic |
| GATATTGAGCCAAACCATGT+GGG | 0.665443 | 4_1:+1947682 | Msa0528950:CDS |
| GATGCTGCTTTAGATCAAAG+CGG | 0.675910 | 4_1:+1946538 | Msa0528950:CDS |
| TGACAAGGCTGTGTACACAT+TGG | 0.676429 | 4_1:-1946898 | None:intergenic |
| GCGGATATAAACTACTAGCG+CGG | 0.708738 | 4_1:+1946470 | Msa0528950:CDS |
| TGTACACAGCCTTGTCACGG+TGG | 0.722089 | 4_1:+1946904 | Msa0528950:CDS |
| GGTATACTCAGATTGCATGG+AGG | 0.769198 | 4_1:+1946087 | Msa0528950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTATATTGCTATTAAAA+GGG | + | chr4_1:1944034-1944053 | Msa0528950:five_prime_UTR | 15.0% |
| !! | ATTAACTAACTCATAAAATT+TGG | - | chr4_1:1944242-1944261 | None:intergenic | 15.0% |
| !!! | ATTTTATGAGTTAGTTAATT+TGG | + | chr4_1:1944243-1944262 | Msa0528950:intron | 15.0% |
| !!! | AAAACAACTTTAAAAAAACA+TGG | - | chr4_1:1944471-1944490 | None:intergenic | 15.0% |
| !!! | TTAAATCTATGTTTTAATAC+AGG | + | chr4_1:1946785-1946804 | Msa0528950:intron | 15.0% |
| !! | TATAAACTTATACAAAAATG+TGG | - | chr4_1:1947364-1947383 | None:intergenic | 15.0% |
| !! | ACTATTTCATTTATCAAAAA+AGG | - | chr4_1:1948001-1948020 | None:intergenic | 15.0% |
| !! | TTGATAAATGAAATAGTAAA+AGG | + | chr4_1:1948004-1948023 | Msa0528950:three_prime_UTR | 15.0% |
| !! | AATCAATAACACTAAAGTAT+AGG | - | chr4_1:1943942-1943961 | None:intergenic | 20.0% |
| !!! | CTTTCTATATTGCTATTAAA+AGG | + | chr4_1:1944033-1944052 | Msa0528950:five_prime_UTR | 20.0% |
| !!! | TAACATTTAAGTTTAACTCT+AGG | + | chr4_1:1944062-1944081 | Msa0528950:five_prime_UTR | 20.0% |
| !! | GAATTCAGTATCTATAATAT+AGG | + | chr4_1:1944126-1944145 | Msa0528950:five_prime_UTR | 20.0% |
| !!! | AATTTGTTGATCAGAAATTT+TGG | + | chr4_1:1944194-1944213 | Msa0528950:intron | 20.0% |
| !! | TTAGTCTATGTTTAGATTTA+CGG | - | chr4_1:1944389-1944408 | None:intergenic | 20.0% |
| !! | GAATTACTTAACAAAATTCA+AGG | - | chr4_1:1944422-1944441 | None:intergenic | 20.0% |
| !! | AAGATGTTATCTTATCATTT+AGG | + | chr4_1:1945660-1945679 | Msa0528950:CDS | 20.0% |
| !! | TCATTGTTACACTTTATTTG+TGG | + | chr4_1:1943863-1943882 | Msa0528950:five_prime_UTR | 25.0% |
| !! | CATTGTTACACTTTATTTGT+GGG | + | chr4_1:1943864-1943883 | Msa0528950:five_prime_UTR | 25.0% |
| ! | TATTTGTGGGTGAATTTAAT+AGG | + | chr4_1:1943877-1943896 | Msa0528950:five_prime_UTR | 25.0% |
| !! | CTTATTTCATTTTGTCTTGT+GGG | + | chr4_1:1943911-1943930 | Msa0528950:five_prime_UTR | 25.0% |
| ! | AGAAAAAGTTTAGCATTAGA+AGG | + | chr4_1:1944592-1944611 | Msa0528950:CDS | 25.0% |
| ! | GAAAAAGTTTAGCATTAGAA+GGG | + | chr4_1:1944593-1944612 | Msa0528950:CDS | 25.0% |
| !! | GATATAGACATTTTCATCTT+TGG | - | chr4_1:1945108-1945127 | None:intergenic | 25.0% |
| !!! | ACAATCTGAAACAAAGTTTT+CGG | - | chr4_1:1945570-1945589 | None:intergenic | 25.0% |
| ! | AATGATAAGATAACATCTTG+AGG | - | chr4_1:1945659-1945678 | None:intergenic | 25.0% |
| ! | TTTGAAAAATAGAGAGAACT+CGG | + | chr4_1:1946066-1946085 | Msa0528950:CDS | 25.0% |
| ! | CAAAGATTAAGAACAATGTA+AGG | - | chr4_1:1946364-1946383 | None:intergenic | 25.0% |
| ! | CAAGTCCATAATAAAAATCT+AGG | + | chr4_1:1946667-1946686 | Msa0528950:CDS | 25.0% |
| !! | CAGTTCCTAGATTTTTATTA+TGG | - | chr4_1:1946675-1946694 | None:intergenic | 25.0% |
| ! | AAAACAAATCACAAACATGA+TGG | + | chr4_1:1947120-1947139 | Msa0528950:intron | 25.0% |
| !! | TCTGACTTGAAACTAAAATT+TGG | + | chr4_1:1947267-1947286 | Msa0528950:intron | 25.0% |
| !! | TTTGTTAAGACAATTGCTTT+TGG | - | chr4_1:1947387-1947406 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTTTTTTTTGCTG+TGG | - | chr4_1:1947444-1947463 | None:intergenic | 25.0% |
| ! | TCATTAAGTTAAGTTTATGC+AGG | + | chr4_1:1947598-1947617 | Msa0528950:intron | 25.0% |
| !!! | AAAAGGTGTTATTGTCTAAA+GGG | - | chr4_1:1947931-1947950 | None:intergenic | 25.0% |
| !!! | AAAAAGGTGTTATTGTCTAA+AGG | - | chr4_1:1947932-1947951 | None:intergenic | 25.0% |
| ! | GCTTATTTCATTTTGTCTTG+TGG | + | chr4_1:1943910-1943929 | Msa0528950:five_prime_UTR | 30.0% |
| TTACAACTCATAGAAGAAGT+GGG | - | chr4_1:1943986-1944005 | None:intergenic | 30.0% | |
| ATTACAACTCATAGAAGAAG+TGG | - | chr4_1:1943987-1944006 | None:intergenic | 30.0% | |
| AAGATTGTCAAAATTACCGT+TGG | + | chr4_1:1944290-1944309 | Msa0528950:intron | 30.0% | |
| ATCAAAATTACAGTGACCAA+CGG | - | chr4_1:1944309-1944328 | None:intergenic | 30.0% | |
| GTTTAGATTTACGGTGAATT+AGG | - | chr4_1:1944380-1944399 | None:intergenic | 30.0% | |
| !! | TGCTTTATTGATGATGTTTC+AGG | + | chr4_1:1944536-1944555 | Msa0528950:intron | 30.0% |
| TTAGCATTAGAAGGGAATTA+AGG | + | chr4_1:1944601-1944620 | Msa0528950:CDS | 30.0% | |
| ! | AACTTTGTATCATTTTCACC+TGG | - | chr4_1:1944744-1944763 | None:intergenic | 30.0% |
| AGGTGAAAATGATACAAAGT+TGG | + | chr4_1:1944743-1944762 | Msa0528950:CDS | 30.0% | |
| AAGTGGTTATTTGAACTATG+AGG | + | chr4_1:1944806-1944825 | Msa0528950:CDS | 30.0% | |
| TTAAACTGTTCATCCAAACA+TGG | - | chr4_1:1944901-1944920 | None:intergenic | 30.0% | |
| ! | CTAGATGAACTTTTCCTTAT+AGG | + | chr4_1:1944987-1945006 | Msa0528950:intron | 30.0% |
| TGCTTAGTTTACAACACAAT+TGG | + | chr4_1:1945434-1945453 | Msa0528950:intron | 30.0% | |
| !! | CAATCTGAAACAAAGTTTTC+GGG | - | chr4_1:1945569-1945588 | None:intergenic | 30.0% |
| AAGATTCCAATGATAAAGCA+AGG | - | chr4_1:1945690-1945709 | None:intergenic | 30.0% | |
| ATCAACTGCAAGAATACAAA+AGG | + | chr4_1:1945718-1945737 | Msa0528950:CDS | 30.0% | |
| AAAAATTTGTGCAGACAACA+AGG | + | chr4_1:1946126-1946145 | Msa0528950:CDS | 30.0% | |
| GCATGGAAAATGTAATCAAA+TGG | + | chr4_1:1946198-1946217 | Msa0528950:CDS | 30.0% | |
| GCTATTGCAAATTGTTTACT+AGG | + | chr4_1:1946223-1946242 | Msa0528950:CDS | 30.0% | |
| TTTAGATCAAAGCGGAAAAT+GGG | + | chr4_1:1946546-1946565 | Msa0528950:CDS | 30.0% | |
| AAATCTAGGAACTGCAAATA+AGG | + | chr4_1:1946681-1946700 | Msa0528950:CDS | 30.0% | |
| AACTGCAAATAAGGTTATGA+AGG | + | chr4_1:1946690-1946709 | Msa0528950:CDS | 30.0% | |
| ! | TGAATAACACAAAGTACCAA+CGG | + | chr4_1:1946736-1946755 | Msa0528950:intron | 30.0% |
| AGATTTAGCAAGACAAACTT+CGG | - | chr4_1:1946937-1946956 | None:intergenic | 30.0% | |
| AGATAAACAGTATATACCTG+TGG | - | chr4_1:1946997-1947016 | None:intergenic | 30.0% | |
| TGTTATTGAAAGTCAAGCTA+GGG | - | chr4_1:1947033-1947052 | None:intergenic | 30.0% | |
| ! | TTGTTATTGAAAGTCAAGCT+AGG | - | chr4_1:1947034-1947053 | None:intergenic | 30.0% |
| AGTCTATATACTCAGACAAA+TGG | - | chr4_1:1947083-1947102 | None:intergenic | 30.0% | |
| ! | TTTCAAGTCAGAATCAATTC+TGG | - | chr4_1:1947259-1947278 | None:intergenic | 30.0% |
| TAAGTTCATGTTTATGTCTG+CGG | - | chr4_1:1947523-1947542 | None:intergenic | 30.0% | |
| TATTGTCTAAAGGGTTCAAT+GGG | - | chr4_1:1947922-1947941 | None:intergenic | 30.0% | |
| TTATTGTCTAAAGGGTTCAA+TGG | - | chr4_1:1947923-1947942 | None:intergenic | 30.0% | |
| !! | AGTAAAAGGAGAAAGTACTA+AGG | + | chr4_1:1948018-1948037 | Msa0528950:three_prime_UTR | 30.0% |
| GAAGAAGTGGGAAGAAAAAA+AGG | - | chr4_1:1943974-1943993 | None:intergenic | 35.0% | |
| TGATAAAGTGTGTGTGTTCA+AGG | + | chr4_1:1944628-1944647 | Msa0528950:CDS | 35.0% | |
| GATAAAGTGTGTGTGTTCAA+GGG | + | chr4_1:1944629-1944648 | Msa0528950:CDS | 35.0% | |
| GGTTATTTGAACTATGAGGT+TGG | + | chr4_1:1944810-1944829 | Msa0528950:intron | 35.0% | |
| CAAACATGGTCTAAGTACAT+GGG | - | chr4_1:1944887-1944906 | None:intergenic | 35.0% | |
| ATACTCAAGTCTTCCTAACA+AGG | - | chr4_1:1945022-1945041 | None:intergenic | 35.0% | |
| GGAAGACTTGAGTATCAAAA+AGG | + | chr4_1:1945027-1945046 | Msa0528950:CDS | 35.0% | |
| ! | TTGTGGACTGCGTTTATTAT+TGG | - | chr4_1:1945145-1945164 | None:intergenic | 35.0% |
| !!! | TCTTGAAGCTGTTTTTCTCA+AGG | + | chr4_1:1945209-1945228 | Msa0528950:CDS | 35.0% |
| GCTAAATCATTGCAAACTCT+TGG | + | chr4_1:1945231-1945250 | Msa0528950:CDS | 35.0% | |
| AATCATTGCAAACTCTTGGA+AGG | + | chr4_1:1945235-1945254 | Msa0528950:CDS | 35.0% | |
| !!! | GCTTTGTTTCTTTTGTACAG+CGG | + | chr4_1:1945746-1945765 | Msa0528950:CDS | 35.0% |
| GGAATTACTTCCAGAAACAA+TGG | + | chr4_1:1945958-1945977 | Msa0528950:CDS | 35.0% | |
| !! | TAGTTGCTTTGGATCTTTTG+AGG | + | chr4_1:1946038-1946057 | Msa0528950:CDS | 35.0% |
| !! | CGGAATCAAATTTTCAAGCA+AGG | + | chr4_1:1946162-1946181 | Msa0528950:CDS | 35.0% |
| ! | AGCTTCTGAGAAATTGATGA+AGG | + | chr4_1:1946330-1946349 | Msa0528950:CDS | 35.0% |
| AAGAAACTGATTAAGCTGGA+AGG | + | chr4_1:1946433-1946452 | Msa0528950:CDS | 35.0% | |
| CTTTAGATCAAAGCGGAAAA+TGG | + | chr4_1:1946545-1946564 | Msa0528950:CDS | 35.0% | |
| GAAGACTAGAAATGGAAGTT+TGG | + | chr4_1:1946865-1946884 | Msa0528950:CDS | 35.0% | |
| GAGGAGAACTGAACTTATAA+GGG | - | chr4_1:1947057-1947076 | None:intergenic | 35.0% | |
| AGAGGAGAACTGAACTTATA+AGG | - | chr4_1:1947058-1947077 | None:intergenic | 35.0% | |
| GGTTTACTTTATGAAGCAAG+AGG | + | chr4_1:1947619-1947638 | Msa0528950:intron | 35.0% | |
| TTGATATCAAACTTCCCACA+TGG | - | chr4_1:1947699-1947718 | None:intergenic | 35.0% | |
| ACTTCTCTACAAAGCTGATT+TGG | + | chr4_1:1947834-1947853 | Msa0528950:CDS | 35.0% | |
| ! | CTTCTCTACAAAGCTGATTT+GGG | + | chr4_1:1947835-1947854 | Msa0528950:CDS | 35.0% |
| !! | TTTTGGTGTGCTTGTAAAGT+TGG | + | chr4_1:1947965-1947984 | Msa0528950:three_prime_UTR | 35.0% |
| GCTGTAAAAGGGAAAGAGAA+TGG | - | chr4_1:1944096-1944115 | None:intergenic | 40.0% | |
| ! | TTCTCTTTCCCTTTTACAGC+AGG | + | chr4_1:1944096-1944115 | Msa0528950:five_prime_UTR | 40.0% |
| CAATAGAGCCTGCTGTAAAA+GGG | - | chr4_1:1944107-1944126 | None:intergenic | 40.0% | |
| TCAATAGAGCCTGCTGTAAA+AGG | - | chr4_1:1944108-1944127 | None:intergenic | 40.0% | |
| TGAATAGTCCCTAGTTGCAA+GGG | - | chr4_1:1944694-1944713 | None:intergenic | 40.0% | |
| CCAAACATGGTCTAAGTACA+TGG | - | chr4_1:1944888-1944907 | None:intergenic | 40.0% | |
| CCATGTACTTAGACCATGTT+TGG | + | chr4_1:1944885-1944904 | Msa0528950:intron | 40.0% | |
| GCTGCACTTCATGTATTTGA+AGG | + | chr4_1:1945060-1945079 | Msa0528950:CDS | 40.0% | |
| ! | ACAGCATGTATCGACATAGA+AGG | - | chr4_1:1945180-1945199 | None:intergenic | 40.0% |
| CAAACTCTTGGAAGGTTTCA+AGG | + | chr4_1:1945243-1945262 | Msa0528950:CDS | 40.0% | |
| GTCAGTATCAATGTCATGTC+TGG | + | chr4_1:1945343-1945362 | Msa0528950:intron | 40.0% | |
| GTTGAATCTGCATTACCAGA+AGG | + | chr4_1:1945539-1945558 | Msa0528950:CDS | 40.0% | |
| AATCTGCATTACCAGAAGGT+TGG | + | chr4_1:1945543-1945562 | Msa0528950:CDS | 40.0% | |
| AAATGCTGTAGAACTGCTTC+CGG | + | chr4_1:1945610-1945629 | Msa0528950:CDS | 40.0% | |
| GGAAAGCCTTGCTTTATCAT+TGG | + | chr4_1:1945681-1945700 | Msa0528950:CDS | 40.0% | |
| GCCAAGAAACAACATAGAAG+AGG | + | chr4_1:1945820-1945839 | Msa0528950:CDS | 40.0% | |
| !! | GCCTCTTCTATGTTGTTTCT+TGG | - | chr4_1:1945824-1945843 | None:intergenic | 40.0% |
| AAACACTCAGAGCGAAAGAA+AGG | - | chr4_1:1945904-1945923 | None:intergenic | 40.0% | |
| TCTCTTCTCTCCATTGTTTC+TGG | - | chr4_1:1945971-1945990 | None:intergenic | 40.0% | |
| AACAAGGTTTGTGTCGAAGA+CGG | + | chr4_1:1946142-1946161 | Msa0528950:CDS | 40.0% | |
| AAGGCAATTTCTCAGATGCA+TGG | + | chr4_1:1946181-1946200 | Msa0528950:CDS | 40.0% | |
| CGCAAAGAAACTGATTAAGC+TGG | + | chr4_1:1946429-1946448 | Msa0528950:CDS | 40.0% | |
| AAACTGATTAAGCTGGAAGG+TGG | + | chr4_1:1946436-1946455 | Msa0528950:CDS | 40.0% | |
| AACTGATTAAGCTGGAAGGT+GGG | + | chr4_1:1946437-1946456 | Msa0528950:CDS | 40.0% | |
| ! | ACTACTAGCGCGGATTTTAT+CGG | + | chr4_1:1946480-1946499 | Msa0528950:CDS | 40.0% |
| !! | GATGCTGCTTTAGATCAAAG+CGG | + | chr4_1:1946538-1946557 | Msa0528950:CDS | 40.0% |
| GCTAAGATTCAGATTGCACA+AGG | + | chr4_1:1946595-1946614 | Msa0528950:CDS | 40.0% | |
| ! | ACACAAAGTACCAACGGAAA+AGG | + | chr4_1:1946742-1946761 | Msa0528950:intron | 40.0% |
| ! | CTCTAAGTTTCCTTTTCCGT+TGG | - | chr4_1:1946755-1946774 | None:intergenic | 40.0% |
| TGCAATCTAGAAGCGGAATA+AGG | - | chr4_1:1946972-1946991 | None:intergenic | 40.0% | |
| ATACTCAGACAAATGGCAAG+AGG | - | chr4_1:1947076-1947095 | None:intergenic | 40.0% | |
| TGTACAATGTAGCGTAGGTT+TGG | + | chr4_1:1947143-1947162 | Msa0528950:intron | 40.0% | |
| TTTGCCTCTAACCCTATGAT+TGG | + | chr4_1:1947294-1947313 | Msa0528950:intron | 40.0% | |
| AGTTCCAATCATAGGGTTAG+AGG | - | chr4_1:1947301-1947320 | None:intergenic | 40.0% | |
| TAACCCTATGATTGGAACTG+CGG | + | chr4_1:1947302-1947321 | Msa0528950:intron | 40.0% | |
| AGATATTGAGCCAAACCATG+TGG | + | chr4_1:1947681-1947700 | Msa0528950:CDS | 40.0% | |
| GATATTGAGCCAAACCATGT+GGG | + | chr4_1:1947682-1947701 | Msa0528950:CDS | 40.0% | |
| ATCAAACTTCCCACATGGTT+TGG | - | chr4_1:1947694-1947713 | None:intergenic | 40.0% | |
| !! | GCTTGTGTTCTGAGAAAACT+TGG | + | chr4_1:1947721-1947740 | Msa0528950:CDS | 40.0% |
| !! | TGTGTTCTGAGAAAACTTGG+TGG | + | chr4_1:1947724-1947743 | Msa0528950:CDS | 40.0% |
| GCTTTAATGCATCAGTGAGA+AGG | - | chr4_1:1947777-1947796 | None:intergenic | 40.0% | |
| ACACAACAAACTCATCTGCA+TGG | + | chr4_1:1947800-1947819 | Msa0528950:CDS | 40.0% | |
| TCATCTGCATGGTACAATCT+TGG | + | chr4_1:1947811-1947830 | Msa0528950:CDS | 40.0% | |
| ! | TGATTTGGGAACATCAGCAT+TGG | + | chr4_1:1947849-1947868 | Msa0528950:CDS | 40.0% |
| !!! | ACGCTGACACTGATTTTCTG+AGG | - | chr4_1:1944350-1944369 | None:intergenic | 45.0% |
| ATCAGAGTCCCTTGCAACTA+GGG | + | chr4_1:1944683-1944702 | Msa0528950:CDS | 45.0% | |
| CTGAATAGTCCCTAGTTGCA+AGG | - | chr4_1:1944695-1944714 | None:intergenic | 45.0% | |
| GACTATTCAGCATCAGCAAG+TGG | + | chr4_1:1944705-1944724 | Msa0528950:CDS | 45.0% | |
| AGTGGTTATTCATCTCGTCC+AGG | + | chr4_1:1944723-1944742 | Msa0528950:CDS | 45.0% | |
| GAATCATCTCTGCGTGAAAG+TGG | + | chr4_1:1944789-1944808 | Msa0528950:CDS | 45.0% | |
| ! | CAAGGCTCTAGCTTCCTATA+AGG | - | chr4_1:1945004-1945023 | None:intergenic | 45.0% |
| !! | TAGGAAGCTAGAGCCTTGTT+AGG | + | chr4_1:1945006-1945025 | Msa0528950:intron | 45.0% |
| TAGAACTGCTTCCGGAGTTA+TGG | + | chr4_1:1945618-1945637 | Msa0528950:CDS | 45.0% | |
| ! | TCTTTCGCTCTGAGTGTTTG+TGG | + | chr4_1:1945905-1945924 | Msa0528950:CDS | 45.0% |
| GACACTAGCTCAACAAGTTG+AGG | + | chr4_1:1945937-1945956 | Msa0528950:CDS | 45.0% | |
| ACTCTCGCTCTTTGTTACTG+CGG | + | chr4_1:1946001-1946020 | Msa0528950:CDS | 45.0% | |
| AGGCGAGCATATAGTTGCTT+TGG | + | chr4_1:1946027-1946046 | Msa0528950:CDS | 45.0% | |
| CTCGGTATACTCAGATTGCA+TGG | + | chr4_1:1946084-1946103 | Msa0528950:CDS | 45.0% | |
| GGTATACTCAGATTGCATGG+AGG | + | chr4_1:1946087-1946106 | Msa0528950:CDS | 45.0% | |
| GCGGATATAAACTACTAGCG+CGG | + | chr4_1:1946470-1946489 | Msa0528950:CDS | 45.0% | |
| CAAAGCGGAAAATGGGATCA+AGG | + | chr4_1:1946553-1946572 | Msa0528950:CDS | 45.0% | |
| TCGCGACAGAAGACTAGAAA+TGG | + | chr4_1:1946857-1946876 | Msa0528950:CDS | 45.0% | |
| TGACAAGGCTGTGTACACAT+TGG | - | chr4_1:1946901-1946920 | None:intergenic | 45.0% | |
| ! | ATGTGTACACAGCCTTGTCA+CGG | + | chr4_1:1946901-1946920 | Msa0528950:CDS | 45.0% |
| TGTGGAGTGCAATCTAGAAG+CGG | - | chr4_1:1946979-1946998 | None:intergenic | 45.0% | |
| GATGGTGTACAATGTAGCGT+AGG | + | chr4_1:1947138-1947157 | Msa0528950:intron | 45.0% | |
| !! | CGTAGGTTTGGTTCCACTTT+TGG | + | chr4_1:1947155-1947174 | Msa0528950:intron | 45.0% |
| !! | AGGTTTGGTTCCACTTTTGG+AGG | + | chr4_1:1947158-1947177 | Msa0528950:intron | 45.0% |
| !! | TTTGGTTCCACTTTTGGAGG+AGG | + | chr4_1:1947161-1947180 | Msa0528950:intron | 45.0% |
| AATTTCGCCTCCTCCAAAAG+TGG | - | chr4_1:1947171-1947190 | None:intergenic | 45.0% | |
| CATCCGCAGTTCCAATCATA+GGG | - | chr4_1:1947308-1947327 | None:intergenic | 45.0% | |
| TCATCCGCAGTTCCAATCAT+AGG | - | chr4_1:1947309-1947328 | None:intergenic | 45.0% | |
| AAGCAACCTTAGCACCTGTT+TGG | + | chr4_1:1947459-1947478 | Msa0528950:intron | 45.0% | |
| ATGCAACCAAACAGGTGCTA+AGG | - | chr4_1:1947468-1947487 | None:intergenic | 45.0% | |
| TTAGCACCTGTTTGGTTGCA+TGG | + | chr4_1:1947467-1947486 | Msa0528950:intron | 45.0% | |
| ACATCACCATGCAACCAAAC+AGG | - | chr4_1:1947476-1947495 | None:intergenic | 45.0% | |
| !! | AAATAAAAGTAAAAATAAAA+AGG | - | chr4_1:1947948-1947967 | None:intergenic | 5.0% |
| !!! | TTTTATTTTTACTTTTATTT+TGG | + | chr4_1:1947948-1947967 | Msa0528950:three_prime_UTR | 5.0% |
| CATCAGAGTCCCTTGCAACT+AGG | + | chr4_1:1944682-1944701 | Msa0528950:CDS | 50.0% | |
| !! | AAGTTTTCGGGCCAACCTTC+TGG | - | chr4_1:1945557-1945576 | None:intergenic | 50.0% |
| TTTGTACAGCGGCTACGAAG+CGG | + | chr4_1:1945757-1945776 | Msa0528950:CDS | 50.0% | |
| TTCAACTGAGAGCGAAGTGG+AGG | - | chr4_1:1945788-1945807 | None:intergenic | 50.0% | |
| CCACTTCGCTCTCAGTTGAA+CGG | + | chr4_1:1945788-1945807 | Msa0528950:CDS | 50.0% | |
| GCTCTTTGTTACTGCGGTGA+AGG | + | chr4_1:1946007-1946026 | Msa0528950:CDS | 50.0% | |
| GAAGGTGGGTCGAGTATTAG+CGG | + | chr4_1:1946451-1946470 | Msa0528950:CDS | 50.0% | |
| GCTTCTAGATTGCACTCCAC+AGG | + | chr4_1:1946978-1946997 | Msa0528950:CDS | 50.0% | |
| !! | GAAGGCACTGAATCGCGTTG+TGG | - | chr4_1:1945162-1945181 | None:intergenic | 55.0% |
| CCTGCGAGGTTCCATAACTC+CGG | - | chr4_1:1945632-1945651 | None:intergenic | 55.0% | |
| CCGTTCAACTGAGAGCGAAG+TGG | - | chr4_1:1945791-1945810 | None:intergenic | 55.0% | |
| ! | TGTACACAGCCTTGTCACGG+TGG | + | chr4_1:1946904-1946923 | Msa0528950:CDS | 55.0% |
| CCGGAGTTATGGAACCTCGC+AGG | + | chr4_1:1945629-1945648 | Msa0528950:CDS | 60.0% | |
| CATCTTGAGGTGAGCCTGCG+AGG | - | chr4_1:1945646-1945665 | None:intergenic | 60.0% | |
| GGCATCATGCCACCGTGACA+AGG | - | chr4_1:1946916-1946935 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 1943857 | 1948115 | 1943857 | ID=Msa0528950;Name=Msa0528950 |
| chr4_1 | mRNA | 1943857 | 1948115 | 1943857 | ID=Msa0528950-mRNA-1;Parent=Msa0528950;Name=Msa0528950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=300|1|1|1|0.8|0.83|6|173|733 |
| chr4_1 | exon | 1943857 | 1944147 | 1943857 | ID=Msa0528950-mRNA-1:exon:585;Parent=Msa0528950-mRNA-1 |
| chr4_1 | exon | 1944558 | 1944827 | 1944558 | ID=Msa0528950-mRNA-1:exon:586;Parent=Msa0528950-mRNA-1 |
| chr4_1 | exon | 1945009 | 1945264 | 1945009 | ID=Msa0528950-mRNA-1:exon:587;Parent=Msa0528950-mRNA-1 |
| chr4_1 | exon | 1945504 | 1946711 | 1945504 | ID=Msa0528950-mRNA-1:exon:588;Parent=Msa0528950-mRNA-1 |
| chr4_1 | exon | 1946846 | 1946999 | 1946846 | ID=Msa0528950-mRNA-1:exon:589;Parent=Msa0528950-mRNA-1 |
| chr4_1 | exon | 1947620 | 1948115 | 1947620 | ID=Msa0528950-mRNA-1:exon:590;Parent=Msa0528950-mRNA-1 |
| chr4_1 | five_prime_UTR | 1943857 | 1944147 | 1943857 | ID=Msa0528950-mRNA-1:five_prime_utr;Parent=Msa0528950-mRNA-1 |
| chr4_1 | five_prime_UTR | 1944558 | 1944566 | 1944558 | ID=Msa0528950-mRNA-1:five_prime_utr;Parent=Msa0528950-mRNA-1 |
| chr4_1 | CDS | 1944567 | 1944827 | 1944567 | ID=Msa0528950-mRNA-1:cds;Parent=Msa0528950-mRNA-1 |
| chr4_1 | CDS | 1945009 | 1945264 | 1945009 | ID=Msa0528950-mRNA-1:cds;Parent=Msa0528950-mRNA-1 |
| chr4_1 | CDS | 1945504 | 1946711 | 1945504 | ID=Msa0528950-mRNA-1:cds;Parent=Msa0528950-mRNA-1 |
| chr4_1 | CDS | 1946846 | 1946999 | 1946846 | ID=Msa0528950-mRNA-1:cds;Parent=Msa0528950-mRNA-1 |
| chr4_1 | CDS | 1947620 | 1947942 | 1947620 | ID=Msa0528950-mRNA-1:cds;Parent=Msa0528950-mRNA-1 |
| chr4_1 | three_prime_UTR | 1947943 | 1948115 | 1947943 | ID=Msa0528950-mRNA-1:three_prime_utr;Parent=Msa0528950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
