AlfalfaGEDB | Msa0702810

M. sativa cultivar zhongmu-4 / Msa0702810

KEGG: K11548
GO: GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047
PFAM: PF03800.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702810	XP_003629971.1	79.174	533	35	2	1	533	3	459	0.0	820

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702810	sp\|Q8RXJ0\|NUF2_ARATH	43.396	477	215	4	1	477	1	422	2.35e-118	359

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702810	G7L8V7	79.174	533	35	2	1	533	3	459	0.0	820

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0702810	0.818811	1.612979e-52	-8.615850e-47
Msa0005020	Msa0702810	0.814984	1.165909e-51	-8.615850e-47
Msa0015570	Msa0702810	0.805090	1.578421e-49	-8.615850e-47
Msa0016040	Msa0702810	0.853685	2.029275e-61	-8.615850e-47
Msa0017670	Msa0702810	0.811707	6.118720e-51	-8.615850e-47
Msa0019900	Msa0702810	0.800268	1.560444e-48	-8.615850e-47
Msa0019930	Msa0702810	0.835035	2.120950e-56	-8.615850e-47
Msa0020540	Msa0702810	0.821920	3.123610e-53	-8.615850e-47
Msa0025160	Msa0702810	0.836496	9.044920e-57	-8.615850e-47
Msa0025580	Msa0702810	0.820048	8.424316e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702810	MtrunA17_Chr8g0380721	79.174	533	35	2	1	533	3	459	0.0	820
Msa0702810	MtrunA17_Chr8g0380701	59.877	324	76	2	31	354	8	277	2.02e-126	370
Msa0702810	MtrunA17_Chr4g0025021	74.615	130	33	0	1	130	1	130	2.15e-66	212
Msa0702810	MtrunA17_Chr4g0025011	73.282	131	29	1	126	250	20	150	2.88e-55	183
Msa0702810	MtrunA17_Chr4g0025001	68.235	85	15	1	304	388	13	85	2.63e-26	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702810	AT1G61000.1	43.396	477	215	4	1	477	1	422	2.39e-119	359

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Find 125 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTAAAAGCTAAACT+TGG	0.521819	4_4:-74607548	Msa0702810:CDS
AAAATGAATCAATGACAATT+TGG	0.310654	4_4:+74609713	None:intergenic
AAACACTATAAAAGTTTGGG+CGG	0.582211	4_4:-74612021	Msa0702810:five_prime_UTR
AAAGAAATTAGCTCGAGACG+AGG	0.643031	4_4:-74609105	Msa0702810:CDS
AACAAGACAGAGAAATGTTG+AGG	0.635074	4_4:-74606881	Msa0702810:CDS
AACAATTAAAGTGGATCAGA+TGG	0.521990	4_4:-74606558	Msa0702810:CDS
AACACTATAAAAGTTTGGGC+GGG	0.559299	4_4:-74612020	Msa0702810:five_prime_UTR
AACGACGCCGGTTCTGGGGT+TGG	0.494116	4_4:+74611806	None:intergenic
AACTCGGTTCGATGAGGATC+AGG	0.411529	4_4:+74611475	None:intergenic
AAGAGAAATGCCTTCTGTTC+AGG	0.346775	4_4:-74611101	Msa0702810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACTATAAAAGTTTGGG+CGG	-	chr4_4:74605745-74605764	Msa0702810:three_prime_UTR	30.0%
TTTAGGAGTTGAACTATTTC+TGG	+	chr4_4:74605902-74605921	None:intergenic	30.0%
TGGCAATTTGAAAGTTGTTT+AGG	+	chr4_4:74605919-74605938	None:intergenic	30.0%
GAATTGAAGATTGAAGAGAA+GGG	+	chr4_4:74606047-74606066	None:intergenic	30.0%
TGAATTGAAGATTGAAGAGA+AGG	+	chr4_4:74606048-74606067	None:intergenic	30.0%
AATGCGATATCAGAAATTGT+AGG	-	chr4_4:74606460-74606479	Msa0702810:intron	30.0%
TGAAGAGAATAAGATTACAC+AGG	-	chr4_4:74606519-74606538	Msa0702810:intron	30.0%
ATGACATCTGTTTATTGTTC+AGG	+	chr4_4:74606734-74606753	None:intergenic	30.0%
ATTCTTACTTCTTGATGTTG+GGG	-	chr4_4:74606851-74606870	Msa0702810:intron	30.0%
TATGGAAGAAATTTCAGTAG+AGG	-	chr4_4:74606887-74606906	Msa0702810:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	74605661	74612127	74605661	ID=Msa0702810;Name=Msa0702810
chr4_4	mRNA	74605661	74612127	74605661	ID=Msa0702810-mRNA-1;Parent=Msa0702810;Name=Msa0702810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=205\|0.61\|0.78\|0.85\|1\|1\|14\|410\|533
chr4_4	exon	74605661	74606160	74605661	ID=Msa0702810-mRNA-1:exon:23301;Parent=Msa0702810-mRNA-1
chr4_4	exon	74606375	74606446	74606375	ID=Msa0702810-mRNA-1:exon:23300;Parent=Msa0702810-mRNA-1
chr4_4	exon	74606529	74606624	74606529	ID=Msa0702810-mRNA-1:exon:23299;Parent=Msa0702810-mRNA-1
chr4_4	exon	74606867	74607024	74606867	ID=Msa0702810-mRNA-1:exon:23298;Parent=Msa0702810-mRNA-1
chr4_4	exon	74607489	74607603	74607489	ID=Msa0702810-mRNA-1:exon:23297;Parent=Msa0702810-mRNA-1
chr4_4	exon	74608113	74608166	74608113	ID=Msa0702810-mRNA-1:exon:23296;Parent=Msa0702810-mRNA-1
chr4_4	exon	74609034	74609141	74609034	ID=Msa0702810-mRNA-1:exon:23295;Parent=Msa0702810-mRNA-1
chr4_4	exon	74609693	74609783	74609693	ID=Msa0702810-mRNA-1:exon:23294;Parent=Msa0702810-mRNA-1
chr4_4	exon	74609910	74609974	74609910	ID=Msa0702810-mRNA-1:exon:23293;Parent=Msa0702810-mRNA-1
chr4_4	exon	74610583	74610672	74610583	ID=Msa0702810-mRNA-1:exon:23292;Parent=Msa0702810-mRNA-1
chr4_4	exon	74610982	74611161	74610982	ID=Msa0702810-mRNA-1:exon:23291;Parent=Msa0702810-mRNA-1
chr4_4	exon	74611248	74611341	74611248	ID=Msa0702810-mRNA-1:exon:23290;Parent=Msa0702810-mRNA-1
chr4_4	exon	74611439	74611663	74611439	ID=Msa0702810-mRNA-1:exon:23289;Parent=Msa0702810-mRNA-1
chr4_4	exon	74611759	74612127	74611759	ID=Msa0702810-mRNA-1:exon:23288;Parent=Msa0702810-mRNA-1
chr4_4	five_prime_UTR	74611923	74612127	74611923	ID=Msa0702810-mRNA-1:five_prime_utr;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74611759	74611922	74611759	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74611439	74611663	74611439	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74611248	74611341	74611248	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74610982	74611161	74610982	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74610583	74610672	74610583	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74609910	74609974	74609910	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74609693	74609783	74609693	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74609034	74609141	74609034	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74608113	74608166	74608113	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74607489	74607603	74607489	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74606867	74607024	74606867	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74606529	74606624	74606529	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74606375	74606446	74606375	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	CDS	74606071	74606160	74606071	ID=Msa0702810-mRNA-1:cds;Parent=Msa0702810-mRNA-1
chr4_4	three_prime_UTR	74605661	74606070	74605661	ID=Msa0702810-mRNA-1:three_prime_utr;Parent=Msa0702810-mRNA-1

Gene Sequence

>Msa0702810

ATGTCGAACTACGAATACCCCAGGCTTCGTCGCCCAGAAATAGTTCAACTCCTAAACAACTTTCAAATTGCCACCGTTACAGAGAACGACCTCTCCAACCCCAGAACCGGCGTCGTTTTGGATCTCTACTCTCGCATCCTCAACTACCTCGATTTTCTCCACGACGAAGACAACGGACAGCTAGATTTCGATGCACTAGAGCATCTCGAGAATCCTGATCTTCACGTTGGATCCATTCACGCTATCAAGCTTTACAACAAGATCAAGGAAATGCTCAGCGCACTTGAATGTCCTAAGAAATACACATTCAACTTTGCTGATCTTCTCAAACCTGATCCTCATCGAACCGAGTTTTTCCTTGGTGCTCTTCTCAATTTCTGTCTCGACAGGGATGGGAGATTGAATGCGATATCAGAAATTGTAGGCGAATTCAACGCGTTGGAACAGAAGATAGTTGAGATTGAAGAGAATAAGATTACACAGTTGAAATTGGCGATTGCTGAATGCAATGAAGCAAGGGAAAGAGAAATGCCTTCTGTTCAGGAGGTGGAAGCACAAGTTAAAGAGTTGCGTCAAACTATTGCAAACCTGAACAATAAACAGATGTCATTGAGAAGTACTATAAAGAAGTTGAAGGAGAGGACTGTGGAAATGGATGATAAGATTTCTAGTGCTGAATATAAACTGGTACAAAATGTTCAAGAGCATGGAAATCTACTTTCAAAAATTGCTCAATCGCCTGATAAAGTACAGAGAGGAGGATTAGAGATGGGATCATCTTGCCATTTGAGAGGAATAGGGCCTTTTAGCATTGAGAGACAGAATGATGAATCTTCCACCGTGGTTCTGTTTTTAAATGCTTCCTACCAAATTGTCATTGATTCATTTTGTGTGTGGGTGTTTCCATTGAGAGCTTTAGAGGAAAAGAAATTAGCTCGAGACGAGGCGAGAAATGCTGAAAGATTAGCCATGCACAATTTCCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGGTACACAAAAAAATGTCAAAGCACTACAAGCAGGTGCATGCAATACAAGAGCAGGTCAATTCTGCTAAAACTATTGAAAAGGATCTTAAAACATTAAAAGCTAAACTTGGCGACGAAGAAGTACTGGAGAAGTCACTTGAGGCCAAGTTGGTTGAAAATCAAAGCAAAGTTGAGCATACGGAAGGGTTGAAGAAGCAGTTTGAGAAAGAATGTGGTTTCATGACGGATGAAGGAACTAAATACCTAAGCAGTATAAAATCAGAGGCGGACTCAAAGAGACGTGACATTGAAACAAGACAGAGAAATGTTGAGGCTATGTTATCGAAGGTGGATGCCATAAACAGTAAAGAGGCCTCAGTAAAAGAATCTGCAACAATTAAAGTGGATCAGATGGAAAGTAAATACAGCGAGCTTTTTGAAGAGCCATACCTCATGAGTCGTAAGAGGGAAATGAAATTGGAACTGAAATTCAAAGTTGCTCTATGTCAGTTGCAATTTTGTAAGTATTCCAACTCGTTTGCTGCACGTGTGGTTGAATCTGGGCTAAAGAATGCGACCATTAAAGGAGCTGGATTTGACCATTAG

Protein sequence

>Msa0702810

MSNYEYPRLRRPEIVQLLNNFQIATVTENDLSNPRTGVVLDLYSRILNYLDFLHDEDNGQLDFDALEHLENPDLHVGSIHAIKLYNKIKEMLSALECPKKYTFNFADLLKPDPHRTEFFLGALLNFCLDRDGRLNAISEIVGEFNALEQKIVEIEENKITQLKLAIAECNEAREREMPSVQEVEAQVKELRQTIANLNNKQMSLRSTIKKLKERTVEMDDKISSAEYKLVQNVQEHGNLLSKIAQSPDKVQRGGLEMGSSCHLRGIGPFSIERQNDESSTVVLFLNASYQIVIDSFCVWVFPLRALEEKKLARDEARNAERLAMHNFHEKTALVEVFSKVHKKMSKHYKQVHAIQEQVNSAKTIEKDLKTLKAKLGDEEVLEKSLEAKLVENQSKVEHTEGLKKQFEKECGFMTDEGTKYLSSIKSEADSKRRDIETRQRNVEAMLSKVDAINSKEASVKESATIKVDQMESKYSELFEEPYLMSRKREMKLELKFKVALCQLQFCKYSNSFAARVVESGLKNATIKGAGFDH*