AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855230 MtrunA17_Chr5g0433181 95.599 659 16 5 1 654 1 651 0.0 1257
Msa0855230 MtrunA17_Chr3g0109071 40.873 756 249 25 1 650 1 664 1.18e-107 340
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855230 AT5G37010.1 36.313 716 281 32 1 648 1 609 9.33e-72 244
Msa0855230 AT1G65710.1 37.055 618 208 25 1 600 1 455 1.44e-59 207

Find 140 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGTGAAATGGGGTTTA+AGG 0.156691 5_4:+48395734 None:intergenic
TCATGATCATTTACAACTTC+TGG 0.158367 5_4:+48395494 None:intergenic
CAATGGAACATTTGTTCTTC+TGG 0.205146 5_4:-48393301 Msa0855230:CDS
AACAGTAATGGTTCTGGTTC+AGG 0.276473 5_4:-48394873 Msa0855230:CDS
AGATTAAGCAGAAGCTCTTC+TGG 0.279054 5_4:-48395224 Msa0855230:CDS
CTAAGAGGGTTTCTTCTATA+AGG 0.281468 5_4:+48394570 None:intergenic
GGAAGAAGATCTTCTGAAAA+TGG 0.284257 5_4:-48394912 Msa0855230:CDS
ACATTCCCATTTCCTCTTGC+AGG 0.287911 5_4:+48394657 None:intergenic
CGTTGATCTCTTTCTCTACT+TGG 0.292517 5_4:+48394972 None:intergenic
TGTGGATAAGCAAGTGAATT+AGG 0.300136 5_4:+48394537 None:intergenic
GAAGAAGAAGAAGCTTTCTT+TGG 0.300588 5_4:+48395014 None:intergenic
GGTGGATTGGTTAGAGGTTC+GGG 0.304904 5_4:+48393667 None:intergenic
TTGTACTAGGCCAGGGAAAA+TGG 0.305744 5_4:-48394850 Msa0855230:CDS
AAAGCTTCTTCTTCTTCTAA+TGG 0.317765 5_4:-48395008 Msa0855230:CDS
TTGTCCCTCATTTCAACATT+TGG 0.318273 5_4:+48393874 None:intergenic
TTGAATTTCATATGAGGTAG+TGG 0.322594 5_4:+48395761 None:intergenic
AACAATTGAAATGGTGAAAT+GGG 0.323280 5_4:+48395726 None:intergenic
TGGTGGATTGGTTAGAGGTT+CGG 0.323939 5_4:+48393666 None:intergenic
ATTTCACCATTTCAATTGTT+AGG 0.327114 5_4:-48395723 Msa0855230:five_prime_UTR
CATGATCATTTACAACTTCT+GGG 0.327537 5_4:+48395495 None:intergenic
ATGTCACCTGCAAGAGGAAA+TGG 0.328874 5_4:-48394663 Msa0855230:CDS
TCTTCAGCTAGGAAATATTC+TGG 0.337380 5_4:-48395185 Msa0855230:CDS
AAGCTTTCTTTGGTGAATTC+CGG 0.339092 5_4:+48395024 None:intergenic
ATCATTGAACAGCAACAATA+AGG 0.348913 5_4:-48395321 Msa0855230:CDS
ATGATTAAGATTAAGACATT+TGG 0.349479 5_4:-48393152 Msa0855230:three_prime_UTR
CCACAATCAAATGCTAATAA+TGG 0.358815 5_4:-48394519 Msa0855230:CDS
TACTGTTACATCATTGGTTA+TGG 0.360201 5_4:-48394814 Msa0855230:CDS
GATTCTACAAATGATGATTC+AGG 0.361087 5_4:+48393457 None:intergenic
TAACAATTGAAATGGTGAAA+TGG 0.361127 5_4:+48395725 None:intergenic
GATGAACAAAAGAGAGTTCA+TGG 0.370002 5_4:-48395104 Msa0855230:CDS
TCCTGCTACTGTTACATCAT+TGG 0.374850 5_4:-48394820 Msa0855230:CDS
GTTTGTGGTGGATTGGTTAG+AGG 0.379183 5_4:+48393661 None:intergenic
AATTGAAGCTGAGACTATTC+AGG 0.383102 5_4:-48394463 Msa0855230:intron
CTGGTGATTCATCGGATTGT+TGG 0.383426 5_4:-48393282 Msa0855230:CDS
AGTTTGATATTTCTTCTGTT+TGG 0.384721 5_4:-48393087 Msa0855230:three_prime_UTR
TGCTTAAACATGCACCCATT+TGG 0.391903 5_4:+48395687 None:intergenic
TGTGAGGATCAGGAGAGTTC+AGG 0.395032 5_4:-48393358 Msa0855230:CDS
GTGGAGGAGAAGGTGTTAAG+AGG 0.397596 5_4:-48394776 Msa0855230:CDS
TTGATATTTCTTCTGTTTGG+TGG 0.414171 5_4:-48393084 Msa0855230:three_prime_UTR
TGGTTCACTTTGTGAGGATC+AGG 0.416836 5_4:-48393368 Msa0855230:CDS
GTTCTGGTTCAGGTTGTACT+AGG 0.417475 5_4:-48394863 Msa0855230:CDS
CAGCAGAGTTGCTATGGAAA+AGG 0.418147 5_4:-48393833 Msa0855230:CDS
AAGTGATTTGGTGGAAGAAA+GGG 0.427395 5_4:+48395628 None:intergenic
CGGAGAGTGAGTAGATCTCC+TGG 0.430572 5_4:-48394933 Msa0855230:CDS
TGATATTTCTTCTGTTTGGT+GGG 0.430604 5_4:-48393083 Msa0855230:three_prime_UTR
TAAGATCAGCAACAGCTTCA+AGG 0.433635 5_4:+48393533 None:intergenic
CATCAGCATAGTGGTGGTAT+TGG 0.433740 5_4:-48393208 Msa0855230:CDS
GGAAATTTGAATTTCATATG+AGG 0.433900 5_4:+48395755 None:intergenic
GTTCCATCACAACAAAATGA+TGG 0.444007 5_4:-48395368 Msa0855230:CDS
AAGAATGTGGTGATGCCATC+AGG 0.447953 5_4:-48393742 Msa0855230:CDS
GGTTCAGGTTGTACTAGGCC+AGG 0.450436 5_4:-48394858 Msa0855230:CDS
ATGTCACCTGCTAGAGGGAA+TGG 0.452778 5_4:-48394717 Msa0855230:CDS
TGAGGGACAACACAAGAAAC+AGG 0.453620 5_4:-48393861 Msa0855230:CDS
GGTCACAAACACAAACCAAA+TGG 0.456343 5_4:-48395702 Msa0855230:exon
AACAATAACAGTAATGGTTC+TGG 0.460724 5_4:-48394879 Msa0855230:CDS
AAAGTGATTTGGTGGAAGAA+AGG 0.463048 5_4:+48395627 None:intergenic
GGTTAGAGGTTCGGGATTGA+CGG 0.468774 5_4:+48393675 None:intergenic
TTGTTCTTCTGGTGATTCAT+CGG 0.470946 5_4:-48393290 Msa0855230:CDS
CCACACGAAGGAACAACAAC+AGG 0.477360 5_4:-48393800 Msa0855230:CDS
CAACAAGTTCAACTTTCTCT+AGG 0.479383 5_4:-48393504 Msa0855230:CDS
GTATGTGGTTTGTGGTGGAT+TGG 0.479396 5_4:+48393654 None:intergenic
AGTAACAATGGTGGAGGAGA+AGG 0.480978 5_4:-48394786 Msa0855230:CDS
ATCAGCAACCTTCTCTTAGC+AGG 0.482494 5_4:-48394623 Msa0855230:CDS
TTCGAGATTGAATTCAAAAG+AGG 0.485046 5_4:-48393257 Msa0855230:CDS
ATCACAACAAAATGATGGGT+TGG 0.488194 5_4:-48395363 Msa0855230:CDS
AATGAAGTGTATGTGGTTTG+TGG 0.490618 5_4:+48393646 None:intergenic
CTTCTTCTTCTTCTAATGGA+AGG 0.491446 5_4:-48395004 Msa0855230:CDS
AGCAGAGTTGCTATGGAAAA+GGG 0.493636 5_4:-48393832 Msa0855230:CDS
TTGTGACCTAACAATTGAAA+TGG 0.493715 5_4:+48395717 None:intergenic
GACAAACAGCAGAGTTGCTA+TGG 0.496318 5_4:-48393839 Msa0855230:CDS
ACCAATGATGTAACAGTAGC+AGG 0.497665 5_4:+48394819 None:intergenic
TTAGGATCAACCTCACTAAG+AGG 0.500068 5_4:+48394555 None:intergenic
GGGTGTGGAAAGTGATTTGG+TGG 0.502086 5_4:+48395619 None:intergenic
GATATTTCTTCTGTTTGGTG+GGG 0.502767 5_4:-48393082 Msa0855230:three_prime_UTR
CCTGTTGTTGTTCCTTCGTG+TGG 0.502796 5_4:+48393800 None:intergenic
GTCACATACTTATGTAAACT+TGG 0.509026 5_4:+48393403 None:intergenic
TGTCACCTGCAAGAGGAAAT+GGG 0.509249 5_4:-48394662 Msa0855230:CDS
TGTCACCTGCTAGAGGGAAT+GGG 0.515047 5_4:-48394716 Msa0855230:CDS
AGAGAAAGTTGAACTTGTTG+TGG 0.518782 5_4:+48393507 None:intergenic
CTGCTACTTCTTCTTCAGCT+AGG 0.521567 5_4:-48395196 Msa0855230:CDS
CCATTATTAGCATTTGATTG+TGG 0.522575 5_4:+48394519 None:intergenic
TGGAGGAGAAGGTGTTAAGA+GGG 0.522678 5_4:-48394775 Msa0855230:CDS
CATAGTGGTGGTATTGGACG+TGG 0.522968 5_4:-48393202 Msa0855230:CDS
CTGCTTCTTGTAATCCCTGA+TGG 0.525661 5_4:+48393727 None:intergenic
GTCACAAACACAAACCAAAT+GGG 0.526346 5_4:-48395701 Msa0855230:exon
ATAACCATCGTCCGCGTCAC+CGG 0.527857 5_4:-48395043 Msa0855230:CDS
CCATTCCCATTCCCTCTAGC+AGG 0.529797 5_4:+48394711 None:intergenic
GAGAGGTGGTTCACTTTGTG+AGG 0.532630 5_4:-48393374 Msa0855230:CDS
CAAGCTTTGTTGAGACAAGC+TGG 0.533501 5_4:+48393562 None:intergenic
AAGTAGTAATGAAGTGTATG+TGG 0.536079 5_4:+48393639 None:intergenic
TGAATTTCATATGAGGTAGT+GGG 0.538489 5_4:+48395762 None:intergenic
AGTGATTTGGTGGAAGAAAG+GGG 0.543930 5_4:+48395629 None:intergenic
ACAACAACAGGAAGAGATCA+AGG 0.544746 5_4:-48393788 Msa0855230:CDS
GATAAAAGTAACAATGGTGG+AGG 0.545003 5_4:-48394792 Msa0855230:CDS
TTCCATCACAACAAAATGAT+GGG 0.545629 5_4:-48395367 Msa0855230:CDS
AGAAACCAAATGTTGAAATG+AGG 0.549758 5_4:-48393879 Msa0855230:CDS
GAAACCAAATGTTGAAATGA+GGG 0.552067 5_4:-48393878 Msa0855230:CDS
CAATCAAATGCTAATAATGG+TGG 0.560234 5_4:-48394516 Msa0855230:CDS
TTGAACAGCAACAATAAGGT+TGG 0.562041 5_4:-48395317 Msa0855230:CDS
AACAACAACAATAACAGTAA+TGG 0.562799 5_4:-48394885 Msa0855230:CDS
GTTATGGATAAAAGTAACAA+TGG 0.571865 5_4:-48394798 Msa0855230:CDS
ATCAGCAACAGCTTCAAGGA+TGG 0.572404 5_4:+48393537 None:intergenic
GAGTTATTCCTGCTAAGAGA+AGG 0.573600 5_4:+48394615 None:intergenic
CCTGCTAGAGGGAATGGGAA+TGG 0.579044 5_4:-48394711 Msa0855230:CDS
CGTTCAATGTCACCTGCAAG+AGG 0.592581 5_4:-48394669 Msa0855230:CDS
TTAGCAGGAATAACTCTGCA+AGG 0.592969 5_4:-48394608 Msa0855230:CDS
TAGGATCAACCTCACTAAGA+GGG 0.593512 5_4:+48394556 None:intergenic
ATGAACAAAAGAGAGTTCAT+GGG 0.597175 5_4:-48395103 Msa0855230:CDS
AATAAGGTTGGTAGTGCTGT+TGG 0.597807 5_4:-48395305 Msa0855230:CDS
AGGAATATGATGGTGTTGCT+CGG 0.600454 5_4:-48395067 Msa0855230:CDS
CGTTCAATGTCACCTGCTAG+AGG 0.601341 5_4:-48394723 Msa0855230:CDS
TATGTGACTGTTAAGAGAGG+TGG 0.603741 5_4:-48393388 Msa0855230:CDS
GAAGTGTATGTGGTTTGTGG+TGG 0.604257 5_4:+48393649 None:intergenic
GAGTGTGATCATCAGCATAG+TGG 0.606136 5_4:-48393217 Msa0855230:CDS
CAATGATGCAATTTCAGCTG+AGG 0.608354 5_4:-48395126 Msa0855230:CDS
TTTGGTGAATTCCGGTGACG+CGG 0.608706 5_4:+48395032 None:intergenic
GTTCAGGTTGTACTAGGCCA+GGG 0.608850 5_4:-48394857 Msa0855230:CDS
GGAAACAAAGTTCAGAACAA+AGG 0.613680 5_4:-48394495 Msa0855230:CDS
AATAGCTTCACTGTGAGTAG+TGG 0.614600 5_4:-48393331 Msa0855230:CDS
TGAGTAGTGGTCAACAACAA+TGG 0.614677 5_4:-48393318 Msa0855230:CDS
ATGGATAAAAGTAACAATGG+TGG 0.618521 5_4:-48394795 Msa0855230:CDS
TTGAGTTTGAGATCCGTTGG+AGG 0.621094 5_4:+48395886 None:intergenic
GATAACAGTGAGGAATATGA+TGG 0.621876 5_4:-48395077 Msa0855230:CDS
TGTTGTGAGTGATGATGTGA+TGG 0.622257 5_4:-48393428 Msa0855230:CDS
ACAATTGAAATGGTGAAATG+GGG 0.623246 5_4:+48395727 None:intergenic
TAGAAGAAACCCTCTTAGTG+AGG 0.626845 5_4:-48394565 Msa0855230:CDS
AACGTTCGAGTAGTAGAGAA+CGG 0.630171 5_4:-48394953 Msa0855230:CDS
GTGATTTGGTGGAAGAAAGG+GGG 0.632458 5_4:+48395630 None:intergenic
AATTCCGGTGACGCGGACGA+TGG 0.635607 5_4:+48395039 None:intergenic
GTTCAATGTCACCTGCTAGA+GGG 0.636297 5_4:-48394722 Msa0855230:CDS
CAAGCTGGAAGAGAAACAGA+AGG 0.639034 5_4:+48393577 None:intergenic
ACATTGTGTTGAACAGTGAA+AGG 0.652397 5_4:+48395389 None:intergenic
AGAATGTGGTGATGCCATCA+GGG 0.662260 5_4:-48393741 Msa0855230:CDS
TGTGATCATCAGCATAGTGG+TGG 0.669655 5_4:-48393214 Msa0855230:CDS
GATGCAATTCTAATTCAATG+TGG 0.677750 5_4:-48395248 Msa0855230:CDS
CTAGCAGGTGACATTGAACG+TGG 0.678229 5_4:+48394726 None:intergenic
GGGTGTGAATTGCCACACGA+AGG 0.680878 5_4:-48393812 Msa0855230:CDS
AAGTATGTGACTGTTAAGAG+AGG 0.686254 5_4:-48393391 Msa0855230:CDS
TAATGCTATTGTGAAGAATG+TGG 0.688273 5_4:-48393755 Msa0855230:CDS
TCATGGGAGTGATAACAGTG+AGG 0.744139 5_4:-48395087 Msa0855230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAATAAAAATTTACT+TGG + chr5_4:48394464-48394483 None:intergenic 10.0%
!!! ATGATAAAAATCTCTTTTTT+TGG + chr5_4:48393348-48393367 None:intergenic 15.0%
!! TGAAATTATAAAACAATCAT+TGG + chr5_4:48394516-48394535 None:intergenic 15.0%
!!! GTTTTATAATTTCATAGAAA+TGG - chr5_4:48394522-48394541 Msa0855230:CDS 15.0%
!! AATATAGATAGATAATGATG+TGG - chr5_4:48394437-48394456 Msa0855230:intron 20.0%
!!! CATATTTTTTCTTAATCATC+CGG + chr5_4:48394756-48394775 None:intergenic 20.0%
!!! GACATGAAATTTGAAATTAT+TGG + chr5_4:48394815-48394834 None:intergenic 20.0%
!! TCATGTCATAACAAAATTAA+TGG - chr5_4:48394828-48394847 Msa0855230:CDS 20.0%
!! TAAGAATGTACATAAAATGA+TGG + chr5_4:48394888-48394907 None:intergenic 20.0%
!! ATGATTAAGATTAAGACATT+TGG - chr5_4:48395660-48395679 Msa0855230:CDS 20.0%
!! TAATGAAAAACACATAAAAG+AGG + chr5_4:48395775-48395794 None:intergenic 20.0%
! GGAAATTTGAATTTCATATG+AGG + chr5_4:48393060-48393079 None:intergenic 25.0%
! AACAATTGAAATGGTGAAAT+GGG + chr5_4:48393089-48393108 None:intergenic 25.0%
! TAACAATTGAAATGGTGAAA+TGG + chr5_4:48393090-48393109 None:intergenic 25.0%
! ATTTCACCATTTCAATTGTT+AGG - chr5_4:48393089-48393108 Msa0855230:three_prime_UTR 25.0%
!!! AGAATGTTTTTGTTGAATTG+GGG + chr5_4:48393217-48393236 None:intergenic 25.0%
!!! CAGAATGTTTTTGTTGAATT+GGG + chr5_4:48393218-48393237 None:intergenic 25.0%
!!! TCAGAATGTTTTTGTTGAAT+TGG + chr5_4:48393219-48393238 None:intergenic 25.0%
!!! TTTTCTCTCTTTTTTCATCA+TGG + chr5_4:48393386-48393405 None:intergenic 25.0%
! AACAACAACAATAACAGTAA+TGG - chr5_4:48393927-48393946 Msa0855230:intron 25.0%
! GTTATGGATAAAAGTAACAA+TGG - chr5_4:48394014-48394033 Msa0855230:intron 25.0%
! TGATTAAGGTTGAATAGTTT+CGG - chr5_4:48394631-48394650 Msa0855230:CDS 25.0%
! GCTAAAAATTGTTACACTAA+GGG + chr5_4:48394673-48394692 None:intergenic 25.0%
! AGCTAAAAATTGTTACACTA+AGG + chr5_4:48394674-48394693 None:intergenic 25.0%
! AGTTTGATATTTCTTCTGTT+TGG - chr5_4:48395725-48395744 Msa0855230:five_prime_UTR 25.0%
TGAATTTCATATGAGGTAGT+GGG + chr5_4:48393053-48393072 None:intergenic 30.0%
TTGAATTTCATATGAGGTAG+TGG + chr5_4:48393054-48393073 None:intergenic 30.0%
ACAATTGAAATGGTGAAATG+GGG + chr5_4:48393088-48393107 None:intergenic 30.0%
TTGTGACCTAACAATTGAAA+TGG + chr5_4:48393098-48393117 None:intergenic 30.0%
!! GAATGTTTTTGTTGAATTGG+GGG + chr5_4:48393216-48393235 None:intergenic 30.0%
CATGATCATTTACAACTTCT+GGG + chr5_4:48393320-48393339 None:intergenic 30.0%
TCATGATCATTTACAACTTC+TGG + chr5_4:48393321-48393340 None:intergenic 30.0%
TTCCATCACAACAAAATGAT+GGG - chr5_4:48393445-48393464 Msa0855230:CDS 30.0%
ATCATTGAACAGCAACAATA+AGG - chr5_4:48393491-48393510 Msa0855230:CDS 30.0%
GATGCAATTCTAATTCAATG+TGG - chr5_4:48393564-48393583 Msa0855230:CDS 30.0%
ATGAACAAAAGAGAGTTCAT+GGG - chr5_4:48393709-48393728 Msa0855230:CDS 30.0%
AAAGCTTCTTCTTCTTCTAA+TGG - chr5_4:48393804-48393823 Msa0855230:CDS 30.0%
AACAATAACAGTAATGGTTC+TGG - chr5_4:48393933-48393952 Msa0855230:intron 30.0%
! TACTGTTACATCATTGGTTA+TGG - chr5_4:48393998-48394017 Msa0855230:intron 30.0%
ATGGATAAAAGTAACAATGG+TGG - chr5_4:48394017-48394036 Msa0855230:intron 30.0%
CCATTATTAGCATTTGATTG+TGG + chr5_4:48394296-48394315 None:intergenic 30.0%
CCACAATCAAATGCTAATAA+TGG - chr5_4:48394293-48394312 Msa0855230:intron 30.0%
CAATCAAATGCTAATAATGG+TGG - chr5_4:48394296-48394315 Msa0855230:intron 30.0%
AGTTCAGAACAAAGGAAAAA+AGG - chr5_4:48394325-48394344 Msa0855230:intron 30.0%
TGGTTAATGTGCTTTGATTA+AGG - chr5_4:48394617-48394636 Msa0855230:CDS 30.0%
AGAAACCAAATGTTGAAATG+AGG - chr5_4:48394933-48394952 Msa0855230:CDS 30.0%
GAAACCAAATGTTGAAATGA+GGG - chr5_4:48394934-48394953 Msa0855230:CDS 30.0%
TAATGCTATTGTGAAGAATG+TGG - chr5_4:48395057-48395076 Msa0855230:CDS 30.0%
AAGTAGTAATGAAGTGTATG+TGG + chr5_4:48395176-48395195 None:intergenic 30.0%
GATTCTACAAATGATGATTC+AGG + chr5_4:48395358-48395377 None:intergenic 30.0%
GTCACATACTTATGTAAACT+TGG + chr5_4:48395412-48395431 None:intergenic 30.0%
TTCGAGATTGAATTCAAAAG+AGG - chr5_4:48395555-48395574 Msa0855230:CDS 30.0%
TTGATATTTCTTCTGTTTGG+TGG - chr5_4:48395728-48395747 Msa0855230:five_prime_UTR 30.0%
TGATATTTCTTCTGTTTGGT+GGG - chr5_4:48395729-48395748 Msa0855230:five_prime_UTR 30.0%
!!! TTTTTGAGTTTGAGATCCGT+TGG + chr5_4:48392932-48392951 None:intergenic 35.0%
AAATGGTGAAATGGGGTTTA+AGG + chr5_4:48393081-48393100 None:intergenic 35.0%
GTCACAAACACAAACCAAAT+GGG - chr5_4:48393111-48393130 Msa0855230:three_prime_UTR 35.0%
!! AAGTGATTTGGTGGAAGAAA+GGG + chr5_4:48393187-48393206 None:intergenic 35.0%
!! AAAGTGATTTGGTGGAAGAA+AGG + chr5_4:48393188-48393207 None:intergenic 35.0%
!!! GCTGTTTTTGTTGTTCTTGA+GGG + chr5_4:48393271-48393290 None:intergenic 35.0%
!!! TGCTGTTTTTGTTGTTCTTG+AGG + chr5_4:48393272-48393291 None:intergenic 35.0%
!! AGTGAAAGGTGTGATTTTGA+TGG + chr5_4:48393412-48393431 None:intergenic 35.0%
ACATTGTGTTGAACAGTGAA+AGG + chr5_4:48393426-48393445 None:intergenic 35.0%
GTTCCATCACAACAAAATGA+TGG - chr5_4:48393444-48393463 Msa0855230:CDS 35.0%
!! AACCCATCATTTTGTTGTGA+TGG + chr5_4:48393450-48393469 None:intergenic 35.0%
!! ATCACAACAAAATGATGGGT+TGG - chr5_4:48393449-48393468 Msa0855230:CDS 35.0%
TTGAACAGCAACAATAAGGT+TGG - chr5_4:48393495-48393514 Msa0855230:CDS 35.0%
TCTTCAGCTAGGAAATATTC+TGG - chr5_4:48393627-48393646 Msa0855230:CDS 35.0%
GATGAACAAAAGAGAGTTCA+TGG - chr5_4:48393708-48393727 Msa0855230:CDS 35.0%
GATAACAGTGAGGAATATGA+TGG - chr5_4:48393735-48393754 Msa0855230:CDS 35.0%
AAGCTTTCTTTGGTGAATTC+CGG + chr5_4:48393791-48393810 None:intergenic 35.0%
GAAGAAGAAGAAGCTTTCTT+TGG + chr5_4:48393801-48393820 None:intergenic 35.0%
CTTCTTCTTCTTCTAATGGA+AGG - chr5_4:48393808-48393827 Msa0855230:CDS 35.0%
! TTTTCAGAAGATCTTCTTCC+AGG + chr5_4:48393900-48393919 None:intergenic 35.0%
! GGAAGAAGATCTTCTGAAAA+TGG - chr5_4:48393900-48393919 Msa0855230:intron 35.0%
GATAAAAGTAACAATGGTGG+AGG - chr5_4:48394020-48394039 Msa0855230:intron 35.0%
CTAAGAGGGTTTCTTCTATA+AGG + chr5_4:48394245-48394264 None:intergenic 35.0%
TGTGGATAAGCAAGTGAATT+AGG + chr5_4:48394278-48394297 None:intergenic 35.0%
GGAAACAAAGTTCAGAACAA+AGG - chr5_4:48394317-48394336 Msa0855230:intron 35.0%
AATTGAAGCTGAGACTATTC+AGG - chr5_4:48394349-48394368 Msa0855230:intron 35.0%
ATCAAGTGTTTGAGCTTCAA+TGG - chr5_4:48394597-48394616 Msa0855230:CDS 35.0%
! CATAAAATGATGGTGCTCAT+AGG + chr5_4:48394878-48394897 None:intergenic 35.0%
TTGTCCCTCATTTCAACATT+TGG + chr5_4:48394941-48394960 None:intergenic 35.0%
AATGAAGTGTATGTGGTTTG+TGG + chr5_4:48395169-48395188 None:intergenic 35.0%
! GTTGTGTTGTGTTCTTTTGA+TGG + chr5_4:48395216-48395235 None:intergenic 35.0%
!! AGAGAAAGTTGAACTTGTTG+TGG + chr5_4:48395308-48395327 None:intergenic 35.0%
CAACAAGTTCAACTTTCTCT+AGG - chr5_4:48395308-48395327 Msa0855230:CDS 35.0%
AAGTATGTGACTGTTAAGAG+AGG - chr5_4:48395421-48395440 Msa0855230:CDS 35.0%
CAATGGAACATTTGTTCTTC+TGG - chr5_4:48395511-48395530 Msa0855230:CDS 35.0%
TTGTTCTTCTGGTGATTCAT+CGG - chr5_4:48395522-48395541 Msa0855230:CDS 35.0%
! GATATTTCTTCTGTTTGGTG+GGG - chr5_4:48395730-48395749 Msa0855230:five_prime_UTR 35.0%
GGTCACAAACACAAACCAAA+TGG - chr5_4:48393110-48393129 Msa0855230:three_prime_UTR 40.0%
TGCTTAAACATGCACCCATT+TGG + chr5_4:48393128-48393147 None:intergenic 40.0%
!! AGTGATTTGGTGGAAGAAAG+GGG + chr5_4:48393186-48393205 None:intergenic 40.0%
! TTTTTGTTGAATTGGGGGTG+TGG + chr5_4:48393211-48393230 None:intergenic 40.0%
!! AATAAGGTTGGTAGTGCTGT+TGG - chr5_4:48393507-48393526 Msa0855230:CDS 40.0%
AGATTAAGCAGAAGCTCTTC+TGG - chr5_4:48393588-48393607 Msa0855230:CDS 40.0%
CAATGATGCAATTTCAGCTG+AGG - chr5_4:48393686-48393705 Msa0855230:CDS 40.0%
!! AGGAATATGATGGTGTTGCT+CGG - chr5_4:48393745-48393764 Msa0855230:CDS 40.0%
CGTTGATCTCTTTCTCTACT+TGG + chr5_4:48393843-48393862 None:intergenic 40.0%
AACGTTCGAGTAGTAGAGAA+CGG - chr5_4:48393859-48393878 Msa0855230:CDS 40.0%
!! AACAGTAATGGTTCTGGTTC+AGG - chr5_4:48393939-48393958 Msa0855230:intron 40.0%
TCCTGCTACTGTTACATCAT+TGG - chr5_4:48393992-48394011 Msa0855230:intron 40.0%
ACCAATGATGTAACAGTAGC+AGG + chr5_4:48393996-48394015 None:intergenic 40.0%
GAGTTATTCCTGCTAAGAGA+AGG + chr5_4:48394200-48394219 None:intergenic 40.0%
TTAGCAGGAATAACTCTGCA+AGG - chr5_4:48394204-48394223 Msa0855230:intron 40.0%
TAGAAGAAACCCTCTTAGTG+AGG - chr5_4:48394247-48394266 Msa0855230:intron 40.0%
TAGGATCAACCTCACTAAGA+GGG + chr5_4:48394259-48394278 None:intergenic 40.0%
TTAGGATCAACCTCACTAAG+AGG + chr5_4:48394260-48394279 None:intergenic 40.0%
! TTTGGTTTCTGCAGTGGATA+TGG + chr5_4:48394923-48394942 None:intergenic 40.0%
! TCAACATTTGGTTTCTGCAG+TGG + chr5_4:48394929-48394948 None:intergenic 40.0%
AGCAGAGTTGCTATGGAAAA+GGG - chr5_4:48394980-48394999 Msa0855230:CDS 40.0%
ACAACAACAGGAAGAGATCA+AGG - chr5_4:48395024-48395043 Msa0855230:CDS 40.0%
TAAGATCAGCAACAGCTTCA+AGG + chr5_4:48395282-48395301 None:intergenic 40.0%
! TGTTGTGAGTGATGATGTGA+TGG - chr5_4:48395384-48395403 Msa0855230:CDS 40.0%
TATGTGACTGTTAAGAGAGG+TGG - chr5_4:48395424-48395443 Msa0855230:CDS 40.0%
AATAGCTTCACTGTGAGTAG+TGG - chr5_4:48395481-48395500 Msa0855230:CDS 40.0%
TGAGTAGTGGTCAACAACAA+TGG - chr5_4:48395494-48395513 Msa0855230:CDS 40.0%
!! GTGATTTGGTGGAAGAAAGG+GGG + chr5_4:48393185-48393204 None:intergenic 45.0%
! CTGCTACTTCTTCTTCAGCT+AGG - chr5_4:48393616-48393635 Msa0855230:CDS 45.0%
TCATGGGAGTGATAACAGTG+AGG - chr5_4:48393725-48393744 Msa0855230:CDS 45.0%
!! GTTCTGGTTCAGGTTGTACT+AGG - chr5_4:48393949-48393968 Msa0855230:intron 45.0%
TTGTACTAGGCCAGGGAAAA+TGG - chr5_4:48393962-48393981 Msa0855230:intron 45.0%
! AGTAACAATGGTGGAGGAGA+AGG - chr5_4:48394026-48394045 Msa0855230:intron 45.0%
!! TGGAGGAGAAGGTGTTAAGA+GGG - chr5_4:48394037-48394056 Msa0855230:intron 45.0%
GTTCAATGTCACCTGCTAGA+GGG - chr5_4:48394090-48394109 Msa0855230:intron 45.0%
ATGTCACCTGCAAGAGGAAA+TGG - chr5_4:48394149-48394168 Msa0855230:intron 45.0%
TGTCACCTGCAAGAGGAAAT+GGG - chr5_4:48394150-48394169 Msa0855230:intron 45.0%
ACATTCCCATTTCCTCTTGC+AGG + chr5_4:48394158-48394177 None:intergenic 45.0%
ATCAGCAACCTTCTCTTAGC+AGG - chr5_4:48394189-48394208 Msa0855230:intron 45.0%
! ATCATCCGGTTCTAGCAGAA+GGG + chr5_4:48394742-48394761 None:intergenic 45.0%
! AATCATCCGGTTCTAGCAGA+AGG + chr5_4:48394743-48394762 None:intergenic 45.0%
TGAGGGACAACACAAGAAAC+AGG - chr5_4:48394951-48394970 Msa0855230:CDS 45.0%
GACAAACAGCAGAGTTGCTA+TGG - chr5_4:48394973-48394992 Msa0855230:CDS 45.0%
CAGCAGAGTTGCTATGGAAA+AGG - chr5_4:48394979-48394998 Msa0855230:CDS 45.0%
! AAGAATGTGGTGATGCCATC+AGG - chr5_4:48395070-48395089 Msa0855230:CDS 45.0%
! AGAATGTGGTGATGCCATCA+GGG - chr5_4:48395071-48395090 Msa0855230:CDS 45.0%
CTGCTTCTTGTAATCCCTGA+TGG + chr5_4:48395088-48395107 None:intergenic 45.0%
!! TGGTGGATTGGTTAGAGGTT+CGG + chr5_4:48395149-48395168 None:intergenic 45.0%
!! GTTTGTGGTGGATTGGTTAG+AGG + chr5_4:48395154-48395173 None:intergenic 45.0%
!! GTATGTGGTTTGTGGTGGAT+TGG + chr5_4:48395161-48395180 None:intergenic 45.0%
! GAAGTGTATGTGGTTTGTGG+TGG + chr5_4:48395166-48395185 None:intergenic 45.0%
CAAGCTGGAAGAGAAACAGA+AGG + chr5_4:48395238-48395257 None:intergenic 45.0%
!! CAAGCTTTGTTGAGACAAGC+TGG + chr5_4:48395253-48395272 None:intergenic 45.0%
ATCAGCAACAGCTTCAAGGA+TGG + chr5_4:48395278-48395297 None:intergenic 45.0%
TGGTTCACTTTGTGAGGATC+AGG - chr5_4:48395444-48395463 Msa0855230:CDS 45.0%
CTGGTGATTCATCGGATTGT+TGG - chr5_4:48395530-48395549 Msa0855230:CDS 45.0%
GAGTGTGATCATCAGCATAG+TGG - chr5_4:48395595-48395614 Msa0855230:CDS 45.0%
TGTGATCATCAGCATAGTGG+TGG - chr5_4:48395598-48395617 Msa0855230:CDS 45.0%
CATCAGCATAGTGGTGGTAT+TGG - chr5_4:48395604-48395623 Msa0855230:CDS 45.0%
! GGGTGTGGAAAGTGATTTGG+TGG + chr5_4:48393196-48393215 None:intergenic 50.0%
! TGGGGGTGTGGAAAGTGATT+TGG + chr5_4:48393199-48393218 None:intergenic 50.0%
TTTGGTGAATTCCGGTGACG+CGG + chr5_4:48393783-48393802 None:intergenic 50.0%
!! GTTCAGGTTGTACTAGGCCA+GGG - chr5_4:48393955-48393974 Msa0855230:intron 50.0%
! GGAACAGTCACCATTTTCCC+TGG + chr5_4:48393975-48393994 None:intergenic 50.0%
!! GTGGAGGAGAAGGTGTTAAG+AGG - chr5_4:48394036-48394055 Msa0855230:intron 50.0%
CTAGCAGGTGACATTGAACG+TGG + chr5_4:48394089-48394108 None:intergenic 50.0%
CGTTCAATGTCACCTGCTAG+AGG - chr5_4:48394089-48394108 Msa0855230:intron 50.0%
ATGTCACCTGCTAGAGGGAA+TGG - chr5_4:48394095-48394114 Msa0855230:intron 50.0%
TGTCACCTGCTAGAGGGAAT+GGG - chr5_4:48394096-48394115 Msa0855230:intron 50.0%
CGTTCAATGTCACCTGCAAG+AGG - chr5_4:48394143-48394162 Msa0855230:intron 50.0%
! TCATCCGGTTCTAGCAGAAG+GGG + chr5_4:48394741-48394760 None:intergenic 50.0%
! CCTGTTGTTGTTCCTTCGTG+TGG + chr5_4:48395015-48395034 None:intergenic 50.0%
CCACACGAAGGAACAACAAC+AGG - chr5_4:48395012-48395031 Msa0855230:CDS 50.0%
GGTTAGAGGTTCGGGATTGA+CGG + chr5_4:48395140-48395159 None:intergenic 50.0%
!! GGTGGATTGGTTAGAGGTTC+GGG + chr5_4:48395148-48395167 None:intergenic 50.0%
GAGAGGTGGTTCACTTTGTG+AGG - chr5_4:48395438-48395457 Msa0855230:CDS 50.0%
TGTGAGGATCAGGAGAGTTC+AGG - chr5_4:48395454-48395473 Msa0855230:CDS 50.0%
! CATAGTGGTGGTATTGGACG+TGG - chr5_4:48395610-48395629 Msa0855230:CDS 50.0%
ATAACCATCGTCCGCGTCAC+CGG - chr5_4:48393769-48393788 Msa0855230:CDS 55.0%
CGGAGAGTGAGTAGATCTCC+TGG - chr5_4:48393879-48393898 Msa0855230:CDS 55.0%
!! GGTTCAGGTTGTACTAGGCC+AGG - chr5_4:48393954-48393973 Msa0855230:intron 55.0%
CCATTCCCATTCCCTCTAGC+AGG + chr5_4:48394104-48394123 None:intergenic 55.0%
CCTGCTAGAGGGAATGGGAA+TGG - chr5_4:48394101-48394120 Msa0855230:intron 55.0%
GCTCTCGAGATAGCTCGTCT+AGG + chr5_4:48394718-48394737 None:intergenic 55.0%
! CATCCGGTTCTAGCAGAAGG+GGG + chr5_4:48394740-48394759 None:intergenic 55.0%
GGGTGTGAATTGCCACACGA+AGG - chr5_4:48395000-48395019 Msa0855230:CDS 55.0%
! GGAAGAAAGGGGGTGTGAGG+AGG + chr5_4:48393175-48393194 None:intergenic 60.0%
! GGTGGAAGAAAGGGGGTGTG+AGG + chr5_4:48393178-48393197 None:intergenic 60.0%
AATTCCGGTGACGCGGACGA+TGG + chr5_4:48393776-48393795 None:intergenic 60.0%
GAGCCCCCTTCTGCTAGAAC+CGG - chr5_4:48394734-48394753 Msa0855230:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 48392929 48395905 48392929 ID=Msa0855230;Name=Msa0855230
chr5_4 mRNA 48392929 48395905 48392929 ID=Msa0855230-mRNA-1;Parent=Msa0855230;Name=Msa0855230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=200|1|1|1|1|1|2|248|654
chr5_4 exon 48392929 48393899 48392929 ID=Msa0855230-mRNA-1:exon:15269;Parent=Msa0855230-mRNA-1
chr5_4 exon 48394464 48395905 48394464 ID=Msa0855230-mRNA-1:exon:15268;Parent=Msa0855230-mRNA-1
chr5_4 five_prime_UTR 48395706 48395905 48395706 ID=Msa0855230-mRNA-1:five_prime_utr;Parent=Msa0855230-mRNA-1
chr5_4 CDS 48394464 48395705 48394464 ID=Msa0855230-mRNA-1:cds;Parent=Msa0855230-mRNA-1
chr5_4 CDS 48393177 48393899 48393177 ID=Msa0855230-mRNA-1:cds;Parent=Msa0855230-mRNA-1
chr5_4 three_prime_UTR 48392929 48393176 48392929 ID=Msa0855230-mRNA-1:three_prime_utr;Parent=Msa0855230-mRNA-1
Gene Sequence

>Msa0855230

ATGGGTGCATGTTTAAGCAAGAAGAAAGCTTCATCTTCTACTTCCTCCTCACACCCCCTTTCTTCCACCAAATCACTTTCCACACCCCCAATTCAACAAAAACATTCTGATAACAACAATGTCACAGAAACAGAAACTACCCTCAAGAACAACAAAAACAGCATCATTGTACAAGAGAAACAACAAGACCCAGAAGTTGTAAATGATCATGAAGAACCAAAAAAAGAGATTTTTATCATCAAACATAGAAAAAGCCATGATGAAAAAAGAGAGAAAAACTCCATCAAAATCACACCTTTCACTGTTCAACACAATGTTCCATCACAACAAAATGATGGGTTGGTTTCATCTAGTGAAACAGAATCATTGAACAGCAACAATAAGGTTGGTAGTGCTGTTGGTGTGAGAACTTCAAGCTGTACTAAAGAAGAAGTTGATGCAATTCTAATTCAATGTGGAAGATTAAGCAGAAGCTCTTCTGGAAAAGCTGCTACTTCTTCTTCAGCTAGGAAATATTCTGGTTCAAAAAGAAGTTTTGATTTTGATCATTGTGATAACAATGATGCAATTTCAGCTGAGGATGAACAAAAGAGAGTTCATGGGAGTGATAACAGTGAGGAATATGATGGTGTTGCTCGGCATAACCATCGTCCGCGTCACCGGAATTCACCAAAGAAAGCTTCTTCTTCTTCTAATGGAAGGAGAAGAACACCAAGTAGAGAAAGAGATCAACGTTCGAGTAGTAGAGAACGGAGAGTGAGTAGATCTCCTGGAAGAAGATCTTCTGAAAATGGAAGCAACAACAACAATAACAGTAATGGTTCTGGTTCAGGTTGTACTAGGCCAGGGAAAATGGTGACTGTTCCTGCTACTGTTACATCATTGGTTATGGATAAAAGTAACAATGGTGGAGGAGAAGGTGTTAAGAGGGTTATTGTGAAGAGAAATGTTGCATCACCACGTTCAATGTCACCTGCTAGAGGGAATGGGAATGGTTTGAATCAGCAACAGCAACGTTCAATGTCACCTGCAAGAGGAAATGGGAATGTAGTGAATCAGAATCAGCAACCTTCTCTTAGCAGGAATAACTCTGCAAGGAAAACTGAAGTTTCACCTTATAGAAGAAACCCTCTTAGTGAGGTTGATCCTAATTCACTTGCTTATCCACAATCAAATGCTAATAATGGTGGAAACAAAGTTCAGAACAAAGGAAAAAAGGAAATTGAAGCTGAGACTATTCAGAAACCAAATGTTGAAATGAGGGACAACACAAGAAACAGGACAAACAGCAGAGTTGCTATGGAAAAGGGTGTGAATTGCCACACGAAGGAACAACAACAGGAAGAGATCAAGGTAATGTCTGATAATGCTATTGTGAAGAATGTGGTGATGCCATCAGGGATTACAAGAAGCAGATCATCTAGAAGATCAAAAGACTTCGACACCGTCAATCCCGAACCTCTAACCAATCCACCACAAACCACATACACTTCATTACTACTTGAAGACATTCAAAACTTCCATCAAAAGAACACAACACAACCTTCTGTTTCTCTTCCAGCTTGTCTCAACAAAGCTTGTTCCATCCTTGAAGCTGTTGCTGATCTTAACTCCACAACAAGTTCAACTTTCTCTAGGAATGAGTACAACAATGTTGCTGTTCCTGAATCATCATTTGTAGAATCTGAGCTTGTTGTGAGTGATGATGTGATGGAACCAAGTTTACATAAGTATGTGACTGTTAAGAGAGGTGGTTCACTTTGTGAGGATCAGGAGAGTTCAGGAAGTAATAGCTTCACTGTGAGTAGTGGTCAACAACAATGGAACATTTGTTCTTCTGGTGATTCATCGGATTGTTGGAGTTCGAGATTGAATTCAAAAGAGGAGAGTTTGAAAAGAAGAGAGTGTGATCATCAGCATAGTGGTGGTATTGGACGTGGAAGACTTGCTACTGCATCAACATAG

Protein sequence

>Msa0855230

MGACLSKKKASSSTSSSHPLSSTKSLSTPPIQQKHSDNNNVTETETTLKNNKNSIIVQEKQQDPEVVNDHEEPKKEIFIIKHRKSHDEKREKNSIKITPFTVQHNVPSQQNDGLVSSSETESLNSNNKVGSAVGVRTSSCTKEEVDAILIQCGRLSRSSSGKAATSSSARKYSGSKRSFDFDHCDNNDAISAEDEQKRVHGSDNSEEYDGVARHNHRPRHRNSPKKASSSSNGRRRTPSRERDQRSSSRERRVSRSPGRRSSENGSNNNNNSNGSGSGCTRPGKMVTVPATVTSLVMDKSNNGGGEGVKRVIVKRNVASPRSMSPARGNGNGLNQQQQRSMSPARGNGNVVNQNQQPSLSRNNSARKTEVSPYRRNPLSEVDPNSLAYPQSNANNGGNKVQNKGKKEIEAETIQKPNVEMRDNTRNRTNSRVAMEKGVNCHTKEQQQEEIKVMSDNAIVKNVVMPSGITRSRSSRRSKDFDTVNPEPLTNPPQTTYTSLLLEDIQNFHQKNTTQPSVSLPACLNKACSILEAVADLNSTTSSTFSRNEYNNVAVPESSFVESELVVSDDVMEPSLHKYVTVKRGGSLCEDQESSGSNSFTVSSGQQQWNICSSGDSSDCWSSRLNSKEESLKRRECDHQHSGGIGRGRLATAST*