AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280610 MtrunA17_Chr2g0294631 100.000 114 0 0 1 114 1 114 1.97e-84 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280610 AT3G16980.1 88.596 114 13 0 1 114 1 114 2.21e-76 221
Msa0280610 AT4G16265.1 87.719 114 14 0 1 114 1 114 3.00e-76 221
Msa0280610 AT4G16265.2 86.538 104 14 0 11 114 30 133 2.71e-68 201

Find 58 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGATAGTATTTGTTTAT+AGG 0.188566 2_3:-15450699 Msa0280610:three_prime_UTR
GTTTCTTATTAAACGCTTAT+TGG 0.227999 2_3:-15450677 Msa0280610:three_prime_UTR
TCAAGGTTCAACTCATCTTT+TGG 0.241483 2_3:-15450996 Msa0280610:three_prime_UTR
TTAACAAACCAAGGAAATTC+AGG 0.273601 2_3:+15450773 None:intergenic
AGATGAGTTGAACCTTGATT+TGG 0.294045 2_3:+15451001 None:intergenic
CTCCAGCGGTGCCCACAGTT+TGG 0.305887 2_3:+15451044 None:intergenic
TCCAGCGGTGCCCACAGTTT+GGG 0.321240 2_3:+15451045 None:intergenic
TTCTGCTCTCTGTCTTCCTT+AGG 0.321581 2_3:+15453309 None:intergenic
TGGTACTCATCTTGTCTTGA+TGG 0.326563 2_3:+15453444 None:intergenic
GTTGTCGATCAAATGATTAA+TGG 0.343308 2_3:-15450839 Msa0280610:three_prime_UTR
CAGAGAAGAGAGTGTGAGTT+AGG 0.372689 2_3:-15453477 Msa0280610:five_prime_UTR
TCCTTGGTTTGTTAACTTGA+GGG 0.394399 2_3:-15450765 Msa0280610:three_prime_UTR
GATGAGTTGAACCTTGATTT+GGG 0.399692 2_3:+15451002 None:intergenic
ATTAATGGACAAATCCTTGC+GGG 0.400157 2_3:-15450824 Msa0280610:three_prime_UTR
TCTCTAATCTGTGTTAAAAC+AGG 0.413002 2_3:+15450890 None:intergenic
TGAGCGGACTCAAGTGTTGC+AGG 0.420762 2_3:-15452556 Msa0280610:CDS
TTCCTTGGTTTGTTAACTTG+AGG 0.421678 2_3:-15450766 Msa0280610:three_prime_UTR
TGACATAAAGAGAGTGGAAA+AGG 0.422118 2_3:-15453535 Msa0280610:five_prime_UTR
GGGGAAATGTGGAATCAAAA+TGG 0.422261 2_3:-15450740 Msa0280610:three_prime_UTR
TGGATGGCCCTGAATTTCCT+TGG 0.426978 2_3:-15450781 Msa0280610:three_prime_UTR
CCATTCACGGCAAAACTTCA+TGG 0.428840 2_3:+15453424 None:intergenic
TCTGCTCTCTGTCTTCCTTA+GGG 0.428855 2_3:+15453310 None:intergenic
ACCCAAACTGTGGGCACCGC+TGG 0.429710 2_3:-15451046 Msa0280610:CDS
GAGTGGAAAAGGAGAGAAGT+GGG 0.435862 2_3:-15453524 Msa0280610:five_prime_UTR
ACTTGAGGGGTGGGGAAATG+TGG 0.445583 2_3:-15450751 Msa0280610:three_prime_UTR
GTTTGTTAACTTGAGGGGTG+GGG 0.461288 2_3:-15450759 Msa0280610:three_prime_UTR
GGTTTGTTAACTTGAGGGGT+GGG 0.465641 2_3:-15450760 Msa0280610:three_prime_UTR
TCGACAACTATAGTTAAAAC+AGG 0.482635 2_3:+15450854 None:intergenic
GAGTAGAAACGAACCATTCA+CGG 0.485823 2_3:+15453411 None:intergenic
GCCTTGGTGCGAGGAAGAGT+TGG 0.493325 2_3:+15452519 None:intergenic
TGGTTTGTTAACTTGAGGGG+TGG 0.496225 2_3:-15450761 Msa0280610:three_prime_UTR
AGTTGAACCTTGATTTGGGC+AGG 0.503093 2_3:+15451006 None:intergenic
CCTTGGTTTGTTAACTTGAG+GGG 0.505784 2_3:-15450764 Msa0280610:three_prime_UTR
TTGCCGCAATTGCGATCACC+AGG 0.506620 2_3:-15453271 Msa0280610:intron
CGCTGTGTTCAATGCAATCA+TGG 0.530121 2_3:-15452492 Msa0280610:CDS
AAGTATTGACATAAAGAGAG+TGG 0.546839 2_3:-15453541 None:intergenic
TTGAACACAGCGAACAGCCT+TGG 0.548593 2_3:+15452503 None:intergenic
TAACAAACCAAGGAAATTCA+GGG 0.550436 2_3:+15450774 None:intergenic
AGAGTGGAAAAGGAGAGAAG+TGG 0.562002 2_3:-15453525 Msa0280610:five_prime_UTR
GCAACTGCTAGAGGCGAGGA+AGG 0.564765 2_3:-15451095 Msa0280610:CDS
CTCATTATGTTGTCCACTCT+AGG 0.568474 2_3:-15450962 Msa0280610:three_prime_UTR
GGAAAAGGAGAGAAGTGGGA+GGG 0.575224 2_3:-15453520 Msa0280610:five_prime_UTR
GTTTGCTGCAACCCAAACTG+TGG 0.577890 2_3:-15451056 Msa0280610:CDS
CGCAATTGCGGCAAGCGTAG+AGG 0.583746 2_3:+15453280 None:intergenic
TGGAAAAGGAGAGAAGTGGG+AGG 0.583773 2_3:-15453521 Msa0280610:five_prime_UTR
TTTGCTGCAACCCAAACTGT+GGG 0.598453 2_3:-15451055 Msa0280610:CDS
TAACAACATTCTGTACCCTA+AGG 0.599627 2_3:-15453325 Msa0280610:CDS
TTTCAGCATGACAACCCGCA+AGG 0.607032 2_3:+15450810 None:intergenic
GAACCTGGTGATCGCAATTG+CGG 0.608612 2_3:+15453268 None:intergenic
CCCCTCAAGTTAACAAACCA+AGG 0.612225 2_3:+15450764 None:intergenic
CATATGCAGGCAACTGCTAG+AGG 0.615188 2_3:-15451104 Msa0280610:intron
CAGCGAACAGCCTTGGTGCG+AGG 0.628441 2_3:+15452510 None:intergenic
GCAGGCAACTGCTAGAGGCG+AGG 0.653952 2_3:-15451099 Msa0280610:intron
GATTAATGGACAAATCCTTG+CGG 0.658484 2_3:-15450825 Msa0280610:three_prime_UTR
TCCAACTCTTCCTCGCACCA+AGG 0.666434 2_3:-15452520 Msa0280610:CDS
TTCACCACTCTGTTGCTGAG+CGG 0.687981 2_3:-15452572 Msa0280610:CDS
GAGTCCGCTCAGCAACAGAG+TGG 0.694701 2_3:+15452568 None:intergenic
ACAAAACTCAGTCTCTCCAG+CGG 0.698214 2_3:+15451030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGATTTTTTTTTAAAAAATT+AGG - chr2_3:15451082-15451101 Msa0280610:CDS 10.0%
!!! TTGTTTTCAAAAAAATATTA+TGG - chr2_3:15451332-15451351 Msa0280610:intron 10.0%
!!! TTATTATATTTTCTTTTTAG+TGG - chr2_3:15452395-15452414 Msa0280610:intron 10.0%
!! TAAAAAAAAAATGGGTAAAA+GGG + chr2_3:15450758-15450777 None:intergenic 15.0%
!! ATAAAAAAAAAATGGGTAAA+AGG + chr2_3:15450759-15450778 None:intergenic 15.0%
!! AAACTAAAAAAACAGAAAAT+GGG + chr2_3:15450930-15450949 None:intergenic 15.0%
!! AAAACAAAAAAAAAACAGAT+TGG + chr2_3:15451124-15451143 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTGAAGA+TGG - chr2_3:15451138-15451157 Msa0280610:intron 15.0%
!!! AATTTTCCTTTTTTTTTTTG+TGG + chr2_3:15452703-15452722 None:intergenic 15.0%
!!! TTTTATACACAGTAATGATT+CGG + chr2_3:15450902-15450921 None:intergenic 20.0%
!! CAAACTAAAAAAACAGAAAA+TGG + chr2_3:15450931-15450950 None:intergenic 20.0%
!! AAATTAGGGTTTAACAATTA+TGG - chr2_3:15451097-15451116 Msa0280610:CDS 20.0%
!! AATTAGGGTTTAACAATTAT+GGG - chr2_3:15451098-15451117 Msa0280610:CDS 20.0%
!! TGTTCTAATTTGATCAATTT+AGG - chr2_3:15451182-15451201 Msa0280610:intron 20.0%
!!! ATAAGCTACTTTTTAACAAA+AGG - chr2_3:15451272-15451291 Msa0280610:intron 20.0%
!!! TTGATTTTTAGAAGTTTTGA+AGG - chr2_3:15451736-15451755 Msa0280610:intron 20.0%
!!! CTTGAGTTTTATATATTTTG+TGG - chr2_3:15451842-15451861 Msa0280610:intron 20.0%
!! AATTCCAATATGAATTGTTT+AGG - chr2_3:15452138-15452157 Msa0280610:intron 20.0%
!! ATTCCAATATGAATTGTTTA+GGG - chr2_3:15452139-15452158 Msa0280610:intron 20.0%
!! AAACCTTATTCTATTACTTA+TGG - chr2_3:15452982-15453001 Msa0280610:intron 20.0%
!!! AATTTTTTATATGCATATGC+AGG - chr2_3:15453013-15453032 Msa0280610:intron 20.0%
!! TTGAGATAGTATTTGTTTAT+AGG - chr2_3:15453431-15453450 Msa0280610:CDS 20.0%
!!! AGCATTATTAGCTTATTTTG+AGG - chr2_3:15451005-15451024 Msa0280610:three_prime_UTR 25.0%
!!! GCATTATTAGCTTATTTTGA+GGG - chr2_3:15451006-15451025 Msa0280610:three_prime_UTR 25.0%
!!! CATTATTAGCTTATTTTGAG+GGG - chr2_3:15451007-15451026 Msa0280610:three_prime_UTR 25.0%
! GGATAAATAGCTTAATTAAG+TGG - chr2_3:15451213-15451232 Msa0280610:intron 25.0%
! AAAATATTATGGAGAGCTTA+TGG - chr2_3:15451343-15451362 Msa0280610:intron 25.0%
!!! ATTTTGACTTTAAAGTAGAG+TGG - chr2_3:15451785-15451804 Msa0280610:intron 25.0%
!! AAAAAACGTATACGTTTTGA+AGG - chr2_3:15451949-15451968 Msa0280610:intron 25.0%
! TAACCCTAAACAATTCATAT+TGG + chr2_3:15452145-15452164 None:intergenic 25.0%
!!! TATTGTCGTTATCTTGTTTT+TGG - chr2_3:15452250-15452269 Msa0280610:intron 25.0%
! TCTTCACCACAAAAAAAAAA+AGG - chr2_3:15452694-15452713 Msa0280610:intron 25.0%
!!! TTTCTTCATTGCTTTTGAAA+GGG + chr2_3:15452899-15452918 None:intergenic 25.0%
!!! ATTTCTTCATTGCTTTTGAA+AGG + chr2_3:15452900-15452919 None:intergenic 25.0%
! AAAATGCATTCATAAGAGTA+GGG + chr2_3:15452933-15452952 None:intergenic 25.0%
! AAAAATGCATTCATAAGAGT+AGG + chr2_3:15452934-15452953 None:intergenic 25.0%
! GATCCATAAGTAATAGAATA+AGG + chr2_3:15452988-15453007 None:intergenic 25.0%
! TTATTAAAAATCGAGTGATG+TGG - chr2_3:15453211-15453230 Msa0280610:intron 25.0%
! TATTAAAAATCGAGTGATGT+GGG - chr2_3:15453212-15453231 Msa0280610:intron 25.0%
!! TTGTCATGCTGAAATTTTTA+TGG - chr2_3:15453329-15453348 Msa0280610:intron 25.0%
! GTTTCTTATTAAACGCTTAT+TGG - chr2_3:15453453-15453472 Msa0280610:exon 25.0%
GAAAATTGAAATAACGAACC+TGG + chr2_3:15450880-15450899 None:intergenic 30.0%
AAGTTATAGAGGGTTTATGA+AGG - chr2_3:15451061-15451080 Msa0280610:CDS 30.0%
TTAAGCTATTTATCCCAACA+AGG + chr2_3:15451208-15451227 None:intergenic 30.0%
TCACAAGTACTTATCATAGT+AGG - chr2_3:15451430-15451449 Msa0280610:intron 30.0%
! TTGTTTGACTAGTTGTTTAC+TGG - chr2_3:15451473-15451492 Msa0280610:intron 30.0%
!!! TGTTGTTGTTTTTGTTGTTC+AGG - chr2_3:15451499-15451518 Msa0280610:intron 30.0%
! GTAGAGTCATAGGAATTTTA+AGG - chr2_3:15451807-15451826 Msa0280610:intron 30.0%
TTCACTTCTTCACAAACTAA+GGG + chr2_3:15451911-15451930 None:intergenic 30.0%
ATTCACTTCTTCACAAACTA+AGG + chr2_3:15451912-15451931 None:intergenic 30.0%
AGAAGTGAATCTTAGAAAGA+AGG - chr2_3:15451922-15451941 Msa0280610:intron 30.0%
! TTTAGGGTTATAAAGTGTCA+CGG - chr2_3:15452155-15452174 Msa0280610:intron 30.0%
ACAAGATAACGACAATAGAA+AGG + chr2_3:15452247-15452266 None:intergenic 30.0%
!! AATCTCCATTTTAGTGTTCA+TGG - chr2_3:15452343-15452362 Msa0280610:intron 30.0%
TAGAACCATGAACACTAAAA+TGG + chr2_3:15452351-15452370 None:intergenic 30.0%
!! ATTTTAGTGTTCATGGTTCT+AGG - chr2_3:15452350-15452369 Msa0280610:intron 30.0%
TAGCGTAAATGAATATACGA+AGG - chr2_3:15452447-15452466 Msa0280610:intron 30.0%
TGAATATACGAAGGTTTCAT+AGG - chr2_3:15452456-15452475 Msa0280610:intron 30.0%
GAATATACGAAGGTTTCATA+GGG - chr2_3:15452457-15452476 Msa0280610:intron 30.0%
AGAATGAGTTTACAGCATAT+AGG + chr2_3:15452587-15452606 None:intergenic 30.0%
GTATCTCTCATATGTTGAAT+AGG - chr2_3:15452607-15452626 Msa0280610:CDS 30.0%
! ATGTTGAATAGGTAACGTTT+TGG - chr2_3:15452618-15452637 Msa0280610:intron 30.0%
TTTGTGGTGAAGAACTAATT+TGG + chr2_3:15452687-15452706 None:intergenic 30.0%
!! ATATCCACATTACTTTTAGC+GGG + chr2_3:15452820-15452839 None:intergenic 30.0%
!! CATATCCACATTACTTTTAG+CGG + chr2_3:15452821-15452840 None:intergenic 30.0%
AAAAGTAATGTGGATATGTC+AGG - chr2_3:15452823-15452842 Msa0280610:intron 30.0%
!! TTCTTCATTGCTTTTGAAAG+GGG + chr2_3:15452898-15452917 None:intergenic 30.0%
ATTAAAAATCGAGTGATGTG+GGG - chr2_3:15453213-15453232 Msa0280610:intron 30.0%
TCTCTAATCTGTGTTAAAAC+AGG + chr2_3:15453243-15453262 None:intergenic 30.0%
TCGACAACTATAGTTAAAAC+AGG + chr2_3:15453279-15453298 None:intergenic 30.0%
GTTGTCGATCAAATGATTAA+TGG - chr2_3:15453291-15453310 Msa0280610:CDS 30.0%
! CATGCTGAAATTTTTATGGA+TGG - chr2_3:15453333-15453352 Msa0280610:intron 30.0%
TAACAAACCAAGGAAATTCA+GGG + chr2_3:15453359-15453378 None:intergenic 30.0%
TTAACAAACCAAGGAAATTC+AGG + chr2_3:15453360-15453379 None:intergenic 30.0%
!! GAGCAGTGATATTTTAAAGA+GGG + chr2_3:15453494-15453513 None:intergenic 30.0%
!! AGAGCAGTGATATTTTAAAG+AGG + chr2_3:15453495-15453514 None:intergenic 30.0%
TAACAACATTCTGTACCCTA+AGG - chr2_3:15450805-15450824 Msa0280610:three_prime_UTR 35.0%
! TTTGTGTCGCTAAGTTATAG+AGG - chr2_3:15451050-15451069 Msa0280610:CDS 35.0%
! TTGTGTCGCTAAGTTATAGA+GGG - chr2_3:15451051-15451070 Msa0280610:CDS 35.0%
! TTTGAAGATGGTGTTGAAAG+AGG - chr2_3:15451150-15451169 Msa0280610:intron 35.0%
! TTGATCAATTTAGGCCTTGT+TGG - chr2_3:15451191-15451210 Msa0280610:intron 35.0%
!! TGATCAATTTAGGCCTTGTT+GGG - chr2_3:15451192-15451211 Msa0280610:intron 35.0%
TAAGTACTTGTGAAACAGCT+TGG + chr2_3:15451423-15451442 None:intergenic 35.0%
!!! TGTTGTTTTTGTTGTTCAGG+AGG - chr2_3:15451502-15451521 Msa0280610:intron 35.0%
CATAGAACAGAAACTTTACC+TGG + chr2_3:15451679-15451698 None:intergenic 35.0%
CAGGTAAAGTTTCTGTTCTA+TGG - chr2_3:15451677-15451696 Msa0280610:intron 35.0%
!!! TAGAAGTTTTGAAGGAAGAG+AGG - chr2_3:15451744-15451763 Msa0280610:intron 35.0%
!!! AGGAAAGCATTTTCATGCTA+AGG - chr2_3:15451969-15451988 Msa0280610:intron 35.0%
!!! GGAAAGCATTTTCATGCTAA+GGG - chr2_3:15451970-15451989 Msa0280610:intron 35.0%
! TTTTCATGCTAAGGGATAAG+TGG - chr2_3:15451978-15451997 Msa0280610:intron 35.0%
TGCTATAATCTACAACACTC+AGG + chr2_3:15452043-15452062 None:intergenic 35.0%
ATGACTATTGCATAGATGCT+AGG - chr2_3:15452181-15452200 Msa0280610:intron 35.0%
! ATTTAAAGCTGAACTTGTGG+TGG + chr2_3:15452310-15452329 None:intergenic 35.0%
! GACATTTAAAGCTGAACTTG+TGG + chr2_3:15452313-15452332 None:intergenic 35.0%
!! CAAGTTCAGCTTTAAATGTC+AGG - chr2_3:15452313-15452332 Msa0280610:intron 35.0%
AGAAATGTCATTGAGCAACT+TGG + chr2_3:15452753-15452772 None:intergenic 35.0%
TGTGTATAGTGAGCGAATAA+AGG + chr2_3:15452785-15452804 None:intergenic 35.0%
! GATGAGTTGAACCTTGATTT+GGG + chr2_3:15453131-15453150 None:intergenic 35.0%
! AGATGAGTTGAACCTTGATT+TGG + chr2_3:15453132-15453151 None:intergenic 35.0%
! TCAAGGTTCAACTCATCTTT+TGG - chr2_3:15453134-15453153 Msa0280610:intron 35.0%
! CAAGGTTCAACTCATCTTTT+GGG - chr2_3:15453135-15453154 Msa0280610:intron 35.0%
! AAGGTTCAACTCATCTTTTG+GGG - chr2_3:15453136-15453155 Msa0280610:intron 35.0%
! TTTTCTCTTCTATCCTAGAG+TGG + chr2_3:15453184-15453203 None:intergenic 35.0%
! GATTAATGGACAAATCCTTG+CGG - chr2_3:15453305-15453324 Msa0280610:CDS 35.0%
! ATTAATGGACAAATCCTTGC+GGG - chr2_3:15453306-15453325 Msa0280610:CDS 35.0%
!! TTCCTTGGTTTGTTAACTTG+AGG - chr2_3:15453364-15453383 Msa0280610:intron 35.0%
!! TCCTTGGTTTGTTAACTTGA+GGG - chr2_3:15453365-15453384 Msa0280610:intron 35.0%
CTCAAAGCTCAACACAAAAA+TGG + chr2_3:15453416-15453435 None:intergenic 35.0%
TGGTACTCATCTTGTCTTGA+TGG + chr2_3:15450689-15450708 None:intergenic 40.0%
GAGTAGAAACGAACCATTCA+CGG + chr2_3:15450722-15450741 None:intergenic 40.0%
AAACAGCTTGGAAGAGCTTA+TGG + chr2_3:15451411-15451430 None:intergenic 40.0%
GTCAAAATCAACAGCGACTT+GGG + chr2_3:15451773-15451792 None:intergenic 40.0%
AGTCAAAATCAACAGCGACT+TGG + chr2_3:15451774-15451793 None:intergenic 40.0%
AAGTAGAGTGGTAGAGTCAT+AGG - chr2_3:15451797-15451816 Msa0280610:intron 40.0%
TCTACAACACTCAGGTTTGT+GGG + chr2_3:15452035-15452054 None:intergenic 40.0%
ATCTACAACACTCAGGTTTG+TGG + chr2_3:15452036-15452055 None:intergenic 40.0%
ACTATTGCATAGATGCTAGG+AGG - chr2_3:15452184-15452203 Msa0280610:intron 40.0%
GTAATGTGGATATGTCAGGT+AGG - chr2_3:15452827-15452846 Msa0280610:intron 40.0%
! AGGTTCAACTCATCTTTTGG+GGG - chr2_3:15453137-15453156 Msa0280610:intron 40.0%
CTCATTATGTTGTCCACTCT+AGG - chr2_3:15453168-15453187 Msa0280610:intron 40.0%
!! CCTTGGTTTGTTAACTTGAG+GGG - chr2_3:15453366-15453385 Msa0280610:intron 40.0%
GGGGAAATGTGGAATCAAAA+TGG - chr2_3:15453390-15453409 Msa0280610:intron 40.0%
AGAGTGGAAAAGGAGAGAAG+TGG - chr2_3:15450605-15450624 Msa0280610:three_prime_UTR 45.0%
GAGTGGAAAAGGAGAGAAGT+GGG - chr2_3:15450606-15450625 Msa0280610:three_prime_UTR 45.0%
! CAGAGAAGAGAGTGTGAGTT+AGG - chr2_3:15450653-15450672 Msa0280610:three_prime_UTR 45.0%
CCATTCACGGCAAAACTTCA+TGG + chr2_3:15450709-15450728 None:intergenic 45.0%
! CCATGAAGTTTTGCCGTGAA+TGG - chr2_3:15450706-15450725 Msa0280610:three_prime_UTR 45.0%
TCTGCTCTCTGTCTTCCTTA+GGG + chr2_3:15450823-15450842 None:intergenic 45.0%
TTCTGCTCTCTGTCTTCCTT+AGG + chr2_3:15450824-15450843 None:intergenic 45.0%
CGCTGTGTTCAATGCAATCA+TGG - chr2_3:15451638-15451657 Msa0280610:intron 45.0%
! TGGTGAAGCTGTGTTTTTCC+AGG - chr2_3:15451658-15451677 Msa0280610:intron 45.0%
TCCCTATGACTCAGTTAGAC+TGG - chr2_3:15452509-15452528 Msa0280610:CDS 45.0%
GCCAGTCTAACTGAGTCATA+GGG + chr2_3:15452513-15452532 None:intergenic 45.0%
TGCCAGTCTAACTGAGTCAT+AGG + chr2_3:15452514-15452533 None:intergenic 45.0%
GTGCCATCTGTCAAACAGTT+TGG - chr2_3:15452541-15452560 Msa0280610:CDS 45.0%
CTGCCAAACTGTTTGACAGA+TGG + chr2_3:15452547-15452566 None:intergenic 45.0%
! CCAGTGTTTAGGTTCAGCTA+TGG + chr2_3:15452730-15452749 None:intergenic 45.0%
CCATAGCTGAACCTAAACAC+TGG - chr2_3:15452727-15452746 Msa0280610:intron 45.0%
TCTGCCCGCTAAAAGTAATG+TGG - chr2_3:15452813-15452832 Msa0280610:intron 45.0%
TTTGCTGCAACCCAAACTGT+GGG - chr2_3:15453075-15453094 Msa0280610:intron 45.0%
ACAAAACTCAGTCTCTCCAG+CGG + chr2_3:15453103-15453122 None:intergenic 45.0%
! TTTTGTGCCTGCCCAAATCA+AGG - chr2_3:15453117-15453136 Msa0280610:intron 45.0%
!! AGTTGAACCTTGATTTGGGC+AGG + chr2_3:15453127-15453146 None:intergenic 45.0%
CCCCTCAAGTTAACAAACCA+AGG + chr2_3:15453369-15453388 None:intergenic 45.0%
!! TGGTTTGTTAACTTGAGGGG+TGG - chr2_3:15453369-15453388 Msa0280610:intron 45.0%
!! GGTTTGTTAACTTGAGGGGT+GGG - chr2_3:15453370-15453389 Msa0280610:intron 45.0%
! GTTTGTTAACTTGAGGGGTG+GGG - chr2_3:15453371-15453390 Msa0280610:intron 45.0%
!! TTTAGAAATAAAAAAAAAAT+GGG + chr2_3:15450766-15450785 None:intergenic 5.0%
!! ATTTAGAAATAAAAAAAAAA+TGG + chr2_3:15450767-15450786 None:intergenic 5.0%
!!! GATTTTTTTTTAAAAAATTA+GGG - chr2_3:15451083-15451102 Msa0280610:CDS 5.0%
TGGAAAAGGAGAGAAGTGGG+AGG - chr2_3:15450609-15450628 Msa0280610:three_prime_UTR 50.0%
GGAAAAGGAGAGAAGTGGGA+GGG - chr2_3:15450610-15450629 Msa0280610:three_prime_UTR 50.0%
GAACCTGGTGATCGCAATTG+CGG + chr2_3:15450865-15450884 None:intergenic 50.0%
TTCACCACTCTGTTGCTGAG+CGG - chr2_3:15451558-15451577 Msa0280610:intron 50.0%
TTGAACACAGCGAACAGCCT+TGG + chr2_3:15451630-15451649 None:intergenic 50.0%
GAGCAACTTGGCCAGTGTTT+AGG + chr2_3:15452741-15452760 None:intergenic 50.0%
CATATGCAGGCAACTGCTAG+AGG - chr2_3:15453026-15453045 Msa0280610:intron 50.0%
! GTTTGCTGCAACCCAAACTG+TGG - chr2_3:15453074-15453093 Msa0280610:intron 50.0%
TTTCAGCATGACAACCCGCA+AGG + chr2_3:15453323-15453342 None:intergenic 50.0%
TGGATGGCCCTGAATTTCCT+TGG - chr2_3:15453349-15453368 Msa0280610:intron 50.0%
TTGCCGCAATTGCGATCACC+AGG - chr2_3:15450859-15450878 Msa0280610:three_prime_UTR 55.0%
! TGAGCGGACTCAAGTGTTGC+AGG - chr2_3:15451574-15451593 Msa0280610:intron 55.0%
TCCAACTCTTCCTCGCACCA+AGG - chr2_3:15451610-15451629 Msa0280610:intron 55.0%
ACTTGAGGGGTGGGGAAATG+TGG - chr2_3:15453379-15453398 Msa0280610:intron 55.0%
CGCAATTGCGGCAAGCGTAG+AGG + chr2_3:15450853-15450872 None:intergenic 60.0%
GAGTCCGCTCAGCAACAGAG+TGG + chr2_3:15451565-15451584 None:intergenic 60.0%
! GCCTTGGTGCGAGGAAGAGT+TGG + chr2_3:15451614-15451633 None:intergenic 60.0%
GCAACTGCTAGAGGCGAGGA+AGG - chr2_3:15453035-15453054 Msa0280610:intron 60.0%
TCCAGCGGTGCCCACAGTTT+GGG + chr2_3:15453088-15453107 None:intergenic 60.0%
! CAGCGAACAGCCTTGGTGCG+AGG + chr2_3:15451623-15451642 None:intergenic 65.0%
GCAGGCAACTGCTAGAGGCG+AGG - chr2_3:15453031-15453050 Msa0280610:intron 65.0%
! ACCCAAACTGTGGGCACCGC+TGG - chr2_3:15453084-15453103 Msa0280610:intron 65.0%
CTCCAGCGGTGCCCACAGTT+TGG + chr2_3:15453089-15453108 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 15450596 15453556 15450596 ID=Msa0280610;Name=Msa0280610
chr2_3 mRNA 15450596 15453556 15450596 ID=Msa0280610-mRNA-1;Parent=Msa0280610;Name=Msa0280610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=103|1|1|1|1|1|4|441|114
chr2_3 exon 15450596 15451117 15450596 ID=Msa0280610-mRNA-1:exon:6412;Parent=Msa0280610-mRNA-1
chr2_3 exon 15452473 15452631 15452473 ID=Msa0280610-mRNA-1:exon:6411;Parent=Msa0280610-mRNA-1
chr2_3 exon 15453272 15453347 15453272 ID=Msa0280610-mRNA-1:exon:6410;Parent=Msa0280610-mRNA-1
chr2_3 exon 15453425 15453556 15453425 ID=Msa0280610-mRNA-1:exon:6409;Parent=Msa0280610-mRNA-1
chr2_3 five_prime_UTR 15453454 15453556 15453454 ID=Msa0280610-mRNA-1:five_prime_utr;Parent=Msa0280610-mRNA-1
chr2_3 CDS 15453425 15453453 15453425 ID=Msa0280610-mRNA-1:cds;Parent=Msa0280610-mRNA-1
chr2_3 CDS 15453272 15453347 15453272 ID=Msa0280610-mRNA-1:cds;Parent=Msa0280610-mRNA-1
chr2_3 CDS 15452473 15452631 15452473 ID=Msa0280610-mRNA-1:cds;Parent=Msa0280610-mRNA-1
chr2_3 CDS 15451037 15451117 15451037 ID=Msa0280610-mRNA-1:cds;Parent=Msa0280610-mRNA-1
chr2_3 three_prime_UTR 15450596 15451036 15450596 ID=Msa0280610-mRNA-1:three_prime_utr;Parent=Msa0280610-mRNA-1
Gene Sequence

>Msa0280610

ATGAGTACCATGAAGTTTTGCCGTGAATGTAACAACATTCTGTACCCTAAGGAAGACAGAGAGCAGAAGATTCTCCTCTACGCTTGCCGCAATTGCGATCACCAGGAGGCAGCTGATAACTTCTGTGTCTACAGAAATGAGATTCACCACTCTGTTGCTGAGCGGACTCAAGTGTTGCAGGATGTAGCTGCAGATCCAACTCTTCCTCGCACCAAGGCTGTTCGCTGTGTTCAATGCAATCATGGTGAAGCTGTGTTTTTCCAGGCAACTGCTAGAGGCGAGGAAGGAATGACACTTTTCTTCGTTTGCTGCAACCCAAACTGTGGGCACCGCTGGAGAGACTGA

Protein sequence

>Msa0280610

MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD*