Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146840 | sp|A0A2Z5D852|C71Z6_PASSA | 36.129 | 155 | 83 | 3 | 1 | 155 | 158 | 296 | 1.19e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146840 | G7I6G5 | 92.258 | 155 | 12 | 0 | 1 | 155 | 157 | 311 | 2.89e-97 | 299 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006820 | Msa0146840 | 0.821507 | 3.892542e-53 | -8.615850e-47 |
| Msa0050500 | Msa0146840 | 0.830278 | 3.213122e-55 | -8.615850e-47 |
| Msa0100250 | Msa0146840 | 0.800675 | 1.289203e-48 | -8.615850e-47 |
| Msa0100910 | Msa0146840 | 0.808876 | 2.497171e-50 | -8.615850e-47 |
| Msa0102130 | Msa0146840 | 0.825221 | 5.275739e-54 | -8.615850e-47 |
| Msa0146840 | Msa0175720 | 0.823316 | 1.479225e-53 | -8.615850e-47 |
| Msa0146840 | Msa0200840 | 0.811349 | 7.318948e-51 | -8.615850e-47 |
| Msa0146840 | Msa0200870 | 0.802086 | 6.628180e-49 | -8.615850e-47 |
| Msa0146840 | Msa0203180 | 0.828300 | 9.709074e-55 | -8.615850e-47 |
| Msa0146840 | Msa0215810 | 0.839471 | 1.553370e-57 | -8.615850e-47 |
| Msa0146840 | Msa0230980 | 0.807040 | 6.139243e-50 | -8.615850e-47 |
| Msa0146840 | Msa0234180 | 0.821363 | 4.201405e-53 | -8.615850e-47 |
| Msa0146840 | Msa0243470 | 0.807913 | 4.006692e-50 | -8.615850e-47 |
| Msa0146840 | Msa0246300 | 0.814504 | 1.489548e-51 | -8.615850e-47 |
| Msa0146840 | Msa0265210 | 0.807110 | 5.930826e-50 | -8.615850e-47 |
| Msa0146840 | Msa0270460 | 0.805886 | 1.075118e-49 | -8.615850e-47 |
| Msa0146840 | Msa0281940 | 0.827580 | 1.446556e-54 | -8.615850e-47 |
| Msa0146840 | Msa0284870 | 0.825600 | 4.291402e-54 | -8.615850e-47 |
| Msa0146840 | Msa0309060 | 0.812478 | 4.155867e-51 | -8.615850e-47 |
| Msa0146840 | Msa0426810 | 0.816940 | 4.268211e-52 | -8.615850e-47 |
| Msa0146840 | Msa0488850 | 0.812366 | 4.395645e-51 | -8.615850e-47 |
| Msa0146840 | Msa0534420 | 0.826518 | 2.596468e-54 | -8.615850e-47 |
| Msa0146840 | Msa0576600 | 0.845407 | 4.141669e-59 | -8.615850e-47 |
| Msa0146840 | Msa0583310 | 0.823717 | 1.191817e-53 | -8.615850e-47 |
| Msa0146840 | Msa0590660 | 0.821315 | 4.311045e-53 | -8.615850e-47 |
| Msa0146840 | Msa0617830 | 0.848958 | 4.396433e-60 | -8.615850e-47 |
| Msa0146840 | Msa0620750 | 0.832572 | 8.756924e-56 | -8.615850e-47 |
| Msa0146840 | Msa0622340 | 0.809369 | 1.957495e-50 | -8.615850e-47 |
| Msa0146840 | Msa0630960 | 0.822781 | 1.971318e-53 | -8.615850e-47 |
| Msa0146840 | Msa0630970 | 0.826980 | 2.014246e-54 | -8.615850e-47 |
| Msa0146840 | Msa0656680 | 0.823007 | 1.746232e-53 | -8.615850e-47 |
| Msa0146840 | Msa0669200 | 0.806011 | 1.011608e-49 | -8.615850e-47 |
| Msa0146840 | Msa0698900 | 0.812983 | 3.221290e-51 | -8.615850e-47 |
| Msa0146840 | Msa0714340 | 0.812366 | 4.394799e-51 | -8.615850e-47 |
| Msa0146840 | Msa0724560 | 0.802558 | 5.298655e-49 | -8.615850e-47 |
| Msa0146840 | Msa0739610 | 0.805080 | 1.586597e-49 | -8.615850e-47 |
| Msa0146840 | Msa0824770 | 0.821522 | 3.860690e-53 | -8.615850e-47 |
| Msa0146840 | Msa0848900 | 0.802488 | 5.478936e-49 | -8.615850e-47 |
| Msa0146840 | Msa0899700 | 0.811529 | 6.688502e-51 | -8.615850e-47 |
| Msa0146840 | Msa0964680 | 0.804680 | 1.922745e-49 | -8.615850e-47 |
| Msa0146840 | Msa0981680 | 0.822524 | 2.262708e-53 | -8.615850e-47 |
| Msa0146840 | Msa0982590 | 0.862564 | 4.636566e-64 | -8.615850e-47 |
| Msa0146840 | Msa1043870 | 0.828531 | 8.536534e-55 | -8.615850e-47 |
| Msa0146840 | Msa1143790 | 0.800618 | 1.324592e-48 | -8.615850e-47 |
| Msa0146840 | Msa1198450 | 0.828510 | 8.637448e-55 | -8.615850e-47 |
| Msa0146840 | Msa1208810 | 0.810074 | 1.381358e-50 | -8.615850e-47 |
| Msa0146840 | Msa1218650 | 0.810662 | 1.031031e-50 | -8.615850e-47 |
| Msa0146840 | Msa1259010 | 0.801486 | 8.800402e-49 | -8.615850e-47 |
| Msa0146840 | Msa1306700 | 0.841582 | 4.354265e-58 | -8.615850e-47 |
| Msa0146840 | Msa1322420 | 0.801572 | 8.454096e-49 | -8.615850e-47 |
| Msa0146840 | Msa1335720 | 0.837647 | 4.594092e-57 | -8.615850e-47 |
| Msa0146840 | Msa1419110 | 0.804945 | 1.692749e-49 | -8.615850e-47 |
| Msa0146840 | Msa1439230 | 0.809659 | 1.695861e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146840 | MtrunA17_Chr1g0156101 | 87.742 | 155 | 19 | 0 | 1 | 155 | 156 | 310 | 5.20e-95 | 283 |
| Msa0146840 | MtrunA17_Chr1g0156081 | 86.452 | 155 | 21 | 0 | 1 | 155 | 180 | 334 | 3.56e-92 | 277 |
| Msa0146840 | MtrunA17_Chr1g0156061 | 90.667 | 75 | 7 | 0 | 81 | 155 | 192 | 266 | 9.35e-42 | 144 |
| Msa0146840 | MtrunA17_Chr4g0011961 | 40.645 | 155 | 79 | 3 | 1 | 155 | 153 | 294 | 1.88e-35 | 128 |
| Msa0146840 | MtrunA17_Chr7g0218601 | 40.645 | 155 | 81 | 3 | 1 | 155 | 158 | 301 | 4.83e-35 | 127 |
| Msa0146840 | MtrunA17_Chr4g0011921 | 42.208 | 154 | 77 | 3 | 1 | 154 | 153 | 294 | 7.35e-35 | 126 |
| Msa0146840 | MtrunA17_Chr7g0218611 | 40.000 | 155 | 82 | 3 | 1 | 155 | 157 | 300 | 2.73e-33 | 122 |
| Msa0146840 | MtrunA17_Chr5g0419691 | 40.000 | 155 | 81 | 4 | 1 | 155 | 153 | 295 | 4.38e-33 | 122 |
| Msa0146840 | MtrunA17_Chr4g0011931 | 42.308 | 156 | 78 | 4 | 1 | 156 | 153 | 296 | 1.42e-32 | 117 |
| Msa0146840 | MtrunA17_Chr4g0011861 | 38.462 | 156 | 85 | 4 | 1 | 156 | 153 | 297 | 2.70e-32 | 116 |
| Msa0146840 | MtrunA17_Chr4g0011881 | 38.065 | 155 | 83 | 3 | 1 | 155 | 154 | 295 | 3.27e-31 | 116 |
| Msa0146840 | MtrunA17_Chr4g0011871 | 38.710 | 155 | 84 | 4 | 1 | 155 | 153 | 296 | 1.14e-30 | 115 |
| Msa0146840 | MtrunA17_Chr4g0011901 | 40.645 | 155 | 80 | 3 | 1 | 155 | 153 | 295 | 5.03e-30 | 113 |
| Msa0146840 | MtrunA17_Chr5g0406651 | 41.406 | 128 | 63 | 3 | 28 | 155 | 181 | 296 | 2.22e-29 | 111 |
| Msa0146840 | MtrunA17_Chr4g0011981 | 40.645 | 155 | 80 | 3 | 1 | 155 | 153 | 295 | 2.03e-28 | 108 |
| Msa0146840 | MtrunA17_Chr5g0431501 | 35.897 | 156 | 88 | 4 | 1 | 155 | 157 | 301 | 1.60e-26 | 103 |
| Msa0146840 | MtrunA17_Chr5g0431461 | 35.897 | 156 | 88 | 4 | 1 | 155 | 157 | 301 | 1.60e-26 | 103 |
| Msa0146840 | MtrunA17_Chr5g0431511 | 34.615 | 156 | 90 | 4 | 1 | 155 | 157 | 301 | 3.33e-26 | 103 |
| Msa0146840 | MtrunA17_Chr4g0058261 | 30.519 | 154 | 96 | 1 | 1 | 154 | 187 | 329 | 2.00e-19 | 84.0 |
| Msa0146840 | MtrunA17_Chr3g0116741 | 38.028 | 142 | 71 | 3 | 14 | 155 | 190 | 314 | 1.87e-18 | 81.3 |
| Msa0146840 | MtrunA17_Chr4g0058281 | 31.847 | 157 | 90 | 4 | 1 | 154 | 169 | 311 | 3.43e-18 | 80.5 |
| Msa0146840 | MtrunA17_Chr3g0116721 | 31.915 | 141 | 85 | 3 | 15 | 155 | 33 | 162 | 1.65e-17 | 75.5 |
| Msa0146840 | MtrunA17_Chr4g0047631 | 29.078 | 141 | 88 | 1 | 15 | 155 | 183 | 311 | 7.35e-17 | 76.6 |
| Msa0146840 | MtrunA17_Chr4g0058201 | 29.677 | 155 | 95 | 3 | 1 | 155 | 151 | 291 | 4.24e-16 | 74.3 |
| Msa0146840 | MtrunA17_Chr4g0058191 | 31.206 | 141 | 83 | 2 | 15 | 155 | 163 | 289 | 6.41e-16 | 73.9 |
| Msa0146840 | MtrunA17_Chr3g0116681 | 30.128 | 156 | 92 | 6 | 1 | 155 | 163 | 302 | 7.29e-16 | 73.6 |
| Msa0146840 | MtrunA17_Chr4g0047661 | 27.397 | 146 | 94 | 2 | 11 | 155 | 182 | 316 | 1.31e-14 | 70.1 |
| Msa0146840 | MtrunA17_Chr4g0047641 | 29.078 | 141 | 89 | 2 | 15 | 155 | 186 | 315 | 3.50e-14 | 68.9 |
| Msa0146840 | MtrunA17_Chr8g0361471 | 30.864 | 162 | 86 | 6 | 1 | 155 | 158 | 300 | 4.60e-14 | 68.6 |
| Msa0146840 | MtrunA17_Chr3g0101651 | 32.484 | 157 | 88 | 5 | 1 | 154 | 162 | 303 | 4.78e-14 | 68.6 |
| Msa0146840 | MtrunA17_Chr3g0101691 | 31.250 | 160 | 88 | 6 | 1 | 155 | 162 | 304 | 8.85e-14 | 67.8 |
| Msa0146840 | MtrunA17_Chr4g0047691 | 27.660 | 141 | 90 | 1 | 15 | 155 | 186 | 314 | 9.81e-14 | 67.4 |
| Msa0146840 | MtrunA17_Chr4g0058231 | 27.160 | 162 | 99 | 3 | 1 | 155 | 151 | 300 | 2.20e-13 | 66.6 |
| Msa0146840 | MtrunA17_Chr6g0465511 | 29.630 | 162 | 88 | 6 | 1 | 155 | 158 | 300 | 3.68e-13 | 65.9 |
| Msa0146840 | MtrunA17_Chr6g0466331 | 29.630 | 162 | 88 | 6 | 1 | 155 | 158 | 300 | 7.08e-13 | 65.1 |
| Msa0146840 | MtrunA17_Chr3g0101711 | 32.278 | 158 | 87 | 6 | 1 | 154 | 161 | 302 | 1.15e-12 | 64.3 |
| Msa0146840 | MtrunA17_Chr3g0101671 | 31.646 | 158 | 90 | 6 | 1 | 155 | 162 | 304 | 2.16e-12 | 63.5 |
| Msa0146840 | MtrunA17_Chr1g0167321 | 28.481 | 158 | 94 | 5 | 1 | 155 | 158 | 299 | 5.48e-12 | 62.4 |
| Msa0146840 | MtrunA17_Chr3g0101661 | 31.410 | 156 | 90 | 5 | 1 | 154 | 162 | 302 | 5.57e-12 | 62.4 |
| Msa0146840 | MtrunA17_Chr5g0431671 | 30.189 | 159 | 85 | 7 | 1 | 155 | 164 | 300 | 5.58e-12 | 62.4 |
| Msa0146840 | MtrunA17_Chr3g0101801 | 25.874 | 143 | 91 | 3 | 15 | 155 | 178 | 307 | 1.00e-11 | 61.6 |
| Msa0146840 | MtrunA17_Chr5g0445461 | 29.677 | 155 | 89 | 5 | 1 | 154 | 163 | 298 | 3.27e-11 | 60.5 |
| Msa0146840 | MtrunA17_Chr5g0431641 | 29.560 | 159 | 86 | 7 | 1 | 155 | 163 | 299 | 3.36e-11 | 60.1 |
| Msa0146840 | MtrunA17_Chr6g0472311 | 25.153 | 163 | 103 | 4 | 1 | 155 | 164 | 315 | 8.27e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146840 | AT4G31500.1 | 40.136 | 147 | 74 | 5 | 10 | 155 | 161 | 294 | 1.98e-25 | 101 |
| Msa0146840 | AT3G26200.1 | 36.478 | 159 | 82 | 6 | 1 | 154 | 151 | 295 | 6.63e-21 | 88.6 |
| Msa0146840 | AT3G26210.1 | 33.758 | 157 | 88 | 6 | 1 | 154 | 154 | 297 | 4.07e-20 | 86.3 |
| Msa0146840 | AT3G26190.1 | 35.443 | 158 | 85 | 7 | 1 | 154 | 151 | 295 | 4.70e-20 | 85.9 |
| Msa0146840 | AT1G13110.1 | 32.075 | 159 | 90 | 5 | 1 | 154 | 155 | 300 | 9.64e-20 | 85.1 |
| Msa0146840 | AT4G13770.1 | 28.387 | 155 | 98 | 2 | 1 | 155 | 154 | 295 | 1.24e-19 | 84.7 |
| Msa0146840 | AT3G44250.1 | 35.000 | 160 | 82 | 7 | 1 | 154 | 151 | 294 | 1.67e-19 | 84.3 |
| Msa0146840 | AT1G13080.2 | 35.849 | 159 | 85 | 5 | 1 | 155 | 36 | 181 | 2.19e-19 | 83.6 |
| Msa0146840 | AT1G13080.1 | 35.849 | 159 | 85 | 5 | 1 | 155 | 154 | 299 | 3.27e-19 | 83.6 |
| Msa0146840 | AT3G48270.1 | 31.469 | 143 | 74 | 3 | 15 | 155 | 166 | 286 | 2.29e-18 | 81.3 |
| Msa0146840 | AT3G53290.1 | 32.716 | 162 | 90 | 6 | 1 | 157 | 81 | 228 | 3.68e-18 | 80.5 |
| Msa0146840 | AT3G26170.1 | 35.032 | 157 | 88 | 6 | 1 | 154 | 153 | 298 | 8.60e-18 | 79.7 |
| Msa0146840 | AT3G26160.1 | 36.478 | 159 | 83 | 7 | 1 | 154 | 153 | 298 | 4.59e-17 | 77.4 |
| Msa0146840 | AT3G26290.1 | 33.333 | 144 | 78 | 5 | 15 | 155 | 168 | 296 | 1.27e-16 | 76.3 |
| Msa0146840 | AT3G26290.2 | 33.333 | 144 | 78 | 5 | 15 | 155 | 181 | 309 | 1.41e-16 | 76.3 |
| Msa0146840 | AT3G48320.1 | 32.624 | 141 | 75 | 3 | 15 | 155 | 167 | 287 | 1.92e-16 | 75.9 |
| Msa0146840 | AT5G57260.1 | 31.646 | 158 | 91 | 5 | 1 | 155 | 153 | 296 | 2.22e-16 | 75.5 |
| Msa0146840 | AT3G48310.1 | 32.168 | 143 | 73 | 3 | 15 | 155 | 167 | 287 | 7.88e-16 | 73.9 |
| Msa0146840 | AT3G48300.1 | 29.655 | 145 | 78 | 3 | 13 | 155 | 162 | 284 | 1.43e-15 | 73.2 |
| Msa0146840 | AT3G48300.2 | 29.655 | 145 | 78 | 3 | 13 | 155 | 164 | 286 | 1.43e-15 | 73.2 |
| Msa0146840 | AT2G24180.1 | 32.639 | 144 | 80 | 5 | 15 | 155 | 173 | 302 | 1.79e-15 | 72.8 |
| Msa0146840 | AT3G26180.1 | 33.540 | 161 | 85 | 6 | 1 | 154 | 153 | 298 | 2.68e-15 | 72.4 |
| Msa0146840 | AT3G26330.1 | 31.013 | 158 | 91 | 5 | 1 | 155 | 154 | 296 | 9.94e-15 | 70.9 |
| Msa0146840 | AT3G48290.2 | 28.873 | 142 | 81 | 2 | 15 | 156 | 168 | 289 | 2.70e-14 | 69.7 |
| Msa0146840 | AT3G48290.1 | 29.078 | 141 | 80 | 2 | 15 | 155 | 168 | 288 | 6.78e-14 | 68.6 |
| Msa0146840 | AT4G13310.2 | 26.752 | 157 | 95 | 4 | 1 | 154 | 155 | 294 | 9.67e-14 | 67.8 |
| Msa0146840 | AT3G26280.2 | 29.560 | 159 | 93 | 6 | 1 | 154 | 172 | 316 | 1.10e-13 | 67.8 |
| Msa0146840 | AT3G26280.1 | 29.560 | 159 | 93 | 6 | 1 | 154 | 155 | 299 | 1.10e-13 | 67.8 |
| Msa0146840 | AT1G13100.1 | 30.189 | 159 | 94 | 5 | 1 | 154 | 148 | 294 | 1.13e-13 | 67.8 |
| Msa0146840 | AT3G26230.1 | 34.722 | 144 | 79 | 6 | 15 | 154 | 163 | 295 | 1.31e-13 | 67.8 |
| Msa0146840 | AT4G13310.1 | 26.752 | 157 | 95 | 4 | 1 | 154 | 155 | 294 | 1.49e-13 | 67.4 |
| Msa0146840 | AT1G13090.1 | 30.435 | 161 | 92 | 6 | 2 | 157 | 152 | 297 | 1.71e-13 | 66.6 |
| Msa0146840 | AT3G48280.1 | 30.714 | 140 | 78 | 3 | 16 | 155 | 166 | 286 | 1.85e-13 | 67.0 |
| Msa0146840 | AT2G02580.1 | 31.646 | 158 | 90 | 6 | 1 | 155 | 154 | 296 | 4.51e-13 | 66.2 |
| Msa0146840 | AT3G53280.1 | 29.193 | 161 | 89 | 7 | 1 | 154 | 151 | 293 | 6.37e-13 | 65.5 |
| Msa0146840 | AT3G26270.1 | 31.250 | 160 | 87 | 7 | 1 | 153 | 155 | 298 | 2.65e-12 | 63.9 |
| Msa0146840 | AT1G13090.2 | 29.114 | 158 | 92 | 6 | 2 | 154 | 152 | 294 | 3.38e-12 | 63.5 |
| Msa0146840 | AT4G20235.2 | 28.448 | 116 | 73 | 1 | 4 | 119 | 3 | 108 | 5.99e-12 | 60.1 |
| Msa0146840 | AT4G13290.1 | 27.778 | 126 | 75 | 2 | 15 | 140 | 172 | 281 | 1.19e-11 | 62.0 |
| Msa0146840 | AT3G26830.1 | 28.025 | 157 | 95 | 6 | 2 | 154 | 152 | 294 | 1.39e-11 | 61.6 |
| Msa0146840 | AT3G26310.1 | 24.684 | 158 | 101 | 5 | 1 | 155 | 153 | 295 | 1.66e-11 | 61.6 |
| Msa0146840 | AT3G53300.1 | 30.625 | 160 | 90 | 7 | 1 | 154 | 151 | 295 | 5.10e-11 | 60.1 |
| Msa0146840 | AT1G11610.1 | 23.226 | 155 | 102 | 3 | 1 | 155 | 156 | 293 | 5.78e-11 | 60.1 |
| Msa0146840 | AT1G11610.2 | 23.226 | 155 | 102 | 3 | 1 | 155 | 156 | 293 | 5.85e-11 | 60.1 |
| Msa0146840 | AT5G25120.1 | 26.752 | 157 | 95 | 4 | 1 | 154 | 152 | 291 | 7.56e-11 | 59.7 |
Find 22 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGAGGAAGAAGTTGAAT+TGG | 0.339793 | 1_4:+6586581 | Msa0146840:CDS |
| CCACATCAAAGCTGTGCTTA+TGG | 0.340676 | 1_4:+6586902 | Msa0146840:CDS |
| ATCATATGTAAGATAGCGTT+TGG | 0.344969 | 1_4:+6586540 | Msa0146840:CDS |
| CAATATGATGGTGATGAAAA+AGG | 0.388284 | 1_4:+6586477 | Msa0146840:CDS |
| TGTGGTCATCAATAACTCTT+TGG | 0.401174 | 1_4:-6586770 | None:intergenic |
| GATAGAATCAAAGGAACTCT+TGG | 0.404947 | 1_4:+6586708 | Msa0146840:CDS |
| TCATAAAACATTCAAGGAGT+TGG | 0.405158 | 1_4:+6586737 | Msa0146840:CDS |
| TTCAGCAAGGCCTAAAACTA+AGG | 0.417153 | 1_4:+6586800 | Msa0146840:CDS |
| TATGAGGAAGAAGTTGAATT+GGG | 0.421084 | 1_4:+6586582 | Msa0146840:CDS |
| GAGGCTTCATAAAACATTCA+AGG | 0.502100 | 1_4:+6586731 | Msa0146840:CDS |
| ATAGAATCAAAGGAACTCTT+GGG | 0.505709 | 1_4:+6586709 | Msa0146840:CDS |
| GAAGAAGTTGAATTGGGAAG+TGG | 0.522689 | 1_4:+6586588 | Msa0146840:CDS |
| TCATATGTAAGATAGCGTTT+GGG | 0.524829 | 1_4:+6586541 | Msa0146840:CDS |
| CAAAAGTTGTCACAATATGA+TGG | 0.540141 | 1_4:+6586465 | Msa0146840:CDS |
| GGTTGGGTTGATAGAATCAA+AGG | 0.546062 | 1_4:+6586699 | Msa0146840:CDS |
| CTATCAACCCAACCCAACAA+TGG | 0.603958 | 1_4:-6586690 | None:intergenic |
| TTGAATTGGGAAGTGGACAA+AGG | 0.606977 | 1_4:+6586595 | Msa0146840:CDS |
| CCATAAGCACAGCTTTGATG+TGG | 0.618162 | 1_4:-6586902 | None:intergenic |
| GAATCAAAGGAACTCTTGGG+AGG | 0.654225 | 1_4:+6586712 | Msa0146840:CDS |
| AAGAGTTATTGATGACCACA+TGG | 0.682630 | 1_4:+6586773 | Msa0146840:CDS |
| ACCACATGGATAATTCAGCA+AGG | 0.687980 | 1_4:+6586787 | Msa0146840:CDS |
| GCCTTGCTGAATTATCCATG+TGG | 0.703534 | 1_4:-6586788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAAAATAATTGGAAATA+TGG | + | chr1_4:6587554-6587573 | Msa0146840:intron | 15.0% |
| !! | TAGAAAATAATTGGAAATAT+GGG | + | chr1_4:6587555-6587574 | Msa0146840:intron | 15.0% |
| !! | TTAGAAAATAATTGGAAATA+TGG | + | chr1_4:6587554-6587573 | Msa0146840:intron | 15.0% |
| !! | TAGAAAATAATTGGAAATAT+GGG | + | chr1_4:6587555-6587574 | Msa0146840:intron | 15.0% |
| !!! | AAAATATGTTTTGGATTATG+AGG | + | chr1_4:6586566-6586585 | Msa0146840:CDS | 20.0% |
| !! | TCAAAACAAAAATAAATCCA+CGG | - | chr1_4:6586996-6587015 | None:intergenic | 20.0% |
| !! | ACTTCTATCTCTTAAAATAA+TGG | - | chr1_4:6587183-6587202 | None:intergenic | 20.0% |
| !! | ATGCTCAATTAGAAAATAAT+TGG | + | chr1_4:6587546-6587565 | Msa0146840:intron | 20.0% |
| !! | AGAAAATAATTGGAAATATG+GGG | + | chr1_4:6587556-6587575 | Msa0146840:intron | 20.0% |
| !! | ATCTTTCTTAATGAAATAGA+AGG | - | chr1_4:6587620-6587639 | None:intergenic | 20.0% |
| !!! | AATTTTGAGTTAATTCCATT+TGG | + | chr1_4:6588090-6588109 | Msa0146840:intron | 20.0% |
| !! | TAGAAATAGTACAAAATTTG+AGG | - | chr1_4:6588356-6588375 | None:intergenic | 20.0% |
| !!! | AAAATATGTTTTGGATTATG+AGG | + | chr1_4:6586566-6586585 | Msa0146840:CDS | 20.0% |
| !! | TCAAAACAAAAATAAATCCA+CGG | - | chr1_4:6586996-6587015 | None:intergenic | 20.0% |
| !! | ACTTCTATCTCTTAAAATAA+TGG | - | chr1_4:6587183-6587202 | None:intergenic | 20.0% |
| !! | ATGCTCAATTAGAAAATAAT+TGG | + | chr1_4:6587546-6587565 | Msa0146840:intron | 20.0% |
| !! | AGAAAATAATTGGAAATATG+GGG | + | chr1_4:6587556-6587575 | Msa0146840:intron | 20.0% |
| !! | ATCTTTCTTAATGAAATAGA+AGG | - | chr1_4:6587620-6587639 | None:intergenic | 20.0% |
| !!! | AATTTTGAGTTAATTCCATT+TGG | + | chr1_4:6588090-6588109 | Msa0146840:intron | 20.0% |
| !! | TAGAAATAGTACAAAATTTG+AGG | - | chr1_4:6588356-6588375 | None:intergenic | 20.0% |
| !! | GTTTGGGAAAAAATATGTTT+TGG | + | chr1_4:6586557-6586576 | Msa0146840:CDS | 25.0% |
| ! | ATTTAGTAAAGACGGTTATT+TGG | - | chr1_4:6587052-6587071 | None:intergenic | 25.0% |
| !!! | TATATTTTTTAGCGAAAGAG+AGG | - | chr1_4:6587287-6587306 | None:intergenic | 25.0% |
| ! | ATAGAAAGTTGTAACATAGA+TGG | + | chr1_4:6587934-6587953 | Msa0146840:intron | 25.0% |
| !! | TTTCAGGATAAAACTTTTCA+GGG | - | chr1_4:6588035-6588054 | None:intergenic | 25.0% |
| !! | GTTTGGGAAAAAATATGTTT+TGG | + | chr1_4:6586557-6586576 | Msa0146840:CDS | 25.0% |
| ! | ATTTAGTAAAGACGGTTATT+TGG | - | chr1_4:6587052-6587071 | None:intergenic | 25.0% |
| !!! | TATATTTTTTAGCGAAAGAG+AGG | - | chr1_4:6587287-6587306 | None:intergenic | 25.0% |
| ! | ATAGAAAGTTGTAACATAGA+TGG | + | chr1_4:6587934-6587953 | Msa0146840:intron | 25.0% |
| !! | TTTCAGGATAAAACTTTTCA+GGG | - | chr1_4:6588035-6588054 | None:intergenic | 25.0% |
| CAAAAGTTGTCACAATATGA+TGG | + | chr1_4:6586465-6586484 | Msa0146840:CDS | 30.0% | |
| ! | CAATATGATGGTGATGAAAA+AGG | + | chr1_4:6586477-6586496 | Msa0146840:CDS | 30.0% |
| ATCATATGTAAGATAGCGTT+TGG | + | chr1_4:6586540-6586559 | Msa0146840:CDS | 30.0% | |
| TCATATGTAAGATAGCGTTT+GGG | + | chr1_4:6586541-6586560 | Msa0146840:CDS | 30.0% | |
| TTATGAGGAAGAAGTTGAAT+TGG | + | chr1_4:6586581-6586600 | Msa0146840:CDS | 30.0% | |
| TATGAGGAAGAAGTTGAATT+GGG | + | chr1_4:6586582-6586601 | Msa0146840:CDS | 30.0% | |
| ! | TTCTGATCATTTTCCATTGT+TGG | + | chr1_4:6586677-6586696 | Msa0146840:CDS | 30.0% |
| ! | TCTGATCATTTTCCATTGTT+GGG | + | chr1_4:6586678-6586697 | Msa0146840:CDS | 30.0% |
| ATAGAATCAAAGGAACTCTT+GGG | + | chr1_4:6586709-6586728 | Msa0146840:CDS | 30.0% | |
| TCATAAAACATTCAAGGAGT+TGG | + | chr1_4:6586737-6586756 | Msa0146840:CDS | 30.0% | |
| !! | ACTTCTTGTTCCTTAGTTTT+AGG | - | chr1_4:6586813-6586832 | None:intergenic | 30.0% |
| AAAAATAAATCCACGGTGAA+AGG | - | chr1_4:6586989-6587008 | None:intergenic | 30.0% | |
| ! | GCACATATAAAACTGATTTC+AGG | - | chr1_4:6587511-6587530 | None:intergenic | 30.0% |
| AATGAAATAGAAGGTGAAGA+GGG | - | chr1_4:6587611-6587630 | None:intergenic | 30.0% | |
| TAATGAAATAGAAGGTGAAG+AGG | - | chr1_4:6587612-6587631 | None:intergenic | 30.0% | |
| ! | CAACTTTCTATTGTTTCTCT+TGG | - | chr1_4:6587925-6587944 | None:intergenic | 30.0% |
| TTAACATAGACTAGAGTCTT+TGG | - | chr1_4:6587973-6587992 | None:intergenic | 30.0% | |
| TCTAGTCTATGTTAATGCAT+GGG | + | chr1_4:6587978-6587997 | Msa0146840:intron | 30.0% | |
| ! | CTTTCAGGATAAAACTTTTC+AGG | - | chr1_4:6588036-6588055 | None:intergenic | 30.0% |
| !! | CTGAAAAGTTTTATCCTGAA+AGG | + | chr1_4:6588034-6588053 | Msa0146840:intron | 30.0% |
| !! | TATGAGTTCAGTGGATTTTA+AGG | + | chr1_4:6588062-6588081 | Msa0146840:intron | 30.0% |
| !! | ATGAGTTCAGTGGATTTTAA+GGG | + | chr1_4:6588063-6588082 | Msa0146840:intron | 30.0% |
| ! | ATCTTCTTCACTCTTTTGAT+TGG | + | chr1_4:6588178-6588197 | Msa0146840:intron | 30.0% |
| TTCTTATGCATAGTTATTCC+TGG | - | chr1_4:6588255-6588274 | None:intergenic | 30.0% | |
| CAAAAGTTGTCACAATATGA+TGG | + | chr1_4:6586465-6586484 | Msa0146840:CDS | 30.0% | |
| ! | CAATATGATGGTGATGAAAA+AGG | + | chr1_4:6586477-6586496 | Msa0146840:CDS | 30.0% |
| ATCATATGTAAGATAGCGTT+TGG | + | chr1_4:6586540-6586559 | Msa0146840:CDS | 30.0% | |
| TCATATGTAAGATAGCGTTT+GGG | + | chr1_4:6586541-6586560 | Msa0146840:CDS | 30.0% | |
| TTATGAGGAAGAAGTTGAAT+TGG | + | chr1_4:6586581-6586600 | Msa0146840:CDS | 30.0% | |
| TATGAGGAAGAAGTTGAATT+GGG | + | chr1_4:6586582-6586601 | Msa0146840:CDS | 30.0% | |
| ! | TTCTGATCATTTTCCATTGT+TGG | + | chr1_4:6586677-6586696 | Msa0146840:CDS | 30.0% |
| ! | TCTGATCATTTTCCATTGTT+GGG | + | chr1_4:6586678-6586697 | Msa0146840:CDS | 30.0% |
| ATAGAATCAAAGGAACTCTT+GGG | + | chr1_4:6586709-6586728 | Msa0146840:CDS | 30.0% | |
| TCATAAAACATTCAAGGAGT+TGG | + | chr1_4:6586737-6586756 | Msa0146840:CDS | 30.0% | |
| !! | ACTTCTTGTTCCTTAGTTTT+AGG | - | chr1_4:6586813-6586832 | None:intergenic | 30.0% |
| AAAAATAAATCCACGGTGAA+AGG | - | chr1_4:6586989-6587008 | None:intergenic | 30.0% | |
| ! | GCACATATAAAACTGATTTC+AGG | - | chr1_4:6587511-6587530 | None:intergenic | 30.0% |
| AATGAAATAGAAGGTGAAGA+GGG | - | chr1_4:6587611-6587630 | None:intergenic | 30.0% | |
| TAATGAAATAGAAGGTGAAG+AGG | - | chr1_4:6587612-6587631 | None:intergenic | 30.0% | |
| ! | CAACTTTCTATTGTTTCTCT+TGG | - | chr1_4:6587925-6587944 | None:intergenic | 30.0% |
| TTAACATAGACTAGAGTCTT+TGG | - | chr1_4:6587973-6587992 | None:intergenic | 30.0% | |
| TCTAGTCTATGTTAATGCAT+GGG | + | chr1_4:6587978-6587997 | Msa0146840:intron | 30.0% | |
| ! | CTTTCAGGATAAAACTTTTC+AGG | - | chr1_4:6588036-6588055 | None:intergenic | 30.0% |
| !! | CTGAAAAGTTTTATCCTGAA+AGG | + | chr1_4:6588034-6588053 | Msa0146840:intron | 30.0% |
| !! | TATGAGTTCAGTGGATTTTA+AGG | + | chr1_4:6588062-6588081 | Msa0146840:intron | 30.0% |
| !! | ATGAGTTCAGTGGATTTTAA+GGG | + | chr1_4:6588063-6588082 | Msa0146840:intron | 30.0% |
| ! | ATCTTCTTCACTCTTTTGAT+TGG | + | chr1_4:6588178-6588197 | Msa0146840:intron | 30.0% |
| TTCTTATGCATAGTTATTCC+TGG | - | chr1_4:6588255-6588274 | None:intergenic | 30.0% | |
| ! | ATCATTTTCCATTGTTGGGT+TGG | + | chr1_4:6586682-6586701 | Msa0146840:CDS | 35.0% |
| ! | TCATTTTCCATTGTTGGGTT+GGG | + | chr1_4:6586683-6586702 | Msa0146840:CDS | 35.0% |
| GATAGAATCAAAGGAACTCT+TGG | + | chr1_4:6586708-6586727 | Msa0146840:CDS | 35.0% | |
| GAGGCTTCATAAAACATTCA+AGG | + | chr1_4:6586731-6586750 | Msa0146840:CDS | 35.0% | |
| TGTGGTCATCAATAACTCTT+TGG | - | chr1_4:6586773-6586792 | None:intergenic | 35.0% | |
| ! | AAGAGTTATTGATGACCACA+TGG | + | chr1_4:6586773-6586792 | Msa0146840:CDS | 35.0% |
| ! | TTTTCTCCTTGCAAGGTAAA+CGG | + | chr1_4:6587021-6587040 | Msa0146840:intron | 35.0% |
| GTGTCAGGATTTAGTAAAGA+CGG | - | chr1_4:6587060-6587079 | None:intergenic | 35.0% | |
| !! | ACGAATCAAAGTTGGTATAC+TGG | - | chr1_4:6587090-6587109 | None:intergenic | 35.0% |
| ACAACATGACGAATCAAAGT+TGG | - | chr1_4:6587098-6587117 | None:intergenic | 35.0% | |
| ! | CTAATTGTGGTAAGTTCTAG+CGG | - | chr1_4:6587137-6587156 | None:intergenic | 35.0% |
| GCAATAGATGATCCTAATTG+TGG | - | chr1_4:6587150-6587169 | None:intergenic | 35.0% | |
| AATGTTTGAATCCTTTGCAC+CGG | - | chr1_4:6587249-6587268 | None:intergenic | 35.0% | |
| ATGAAATAGAAGGTGAAGAG+GGG | - | chr1_4:6587610-6587629 | None:intergenic | 35.0% | |
| ATGCAGAACATCTTTATTGC+AGG | + | chr1_4:6587694-6587713 | Msa0146840:intron | 35.0% | |
| AAGTTCAGCAGTAATGGTTT+GGG | + | chr1_4:6587726-6587745 | Msa0146840:intron | 35.0% | |
| AGTGATGAACAAGGTTCAAA+TGG | + | chr1_4:6587777-6587796 | Msa0146840:intron | 35.0% | |
| !! | TTCACCACTGCTTTAAGATA+AGG | - | chr1_4:6587862-6587881 | None:intergenic | 35.0% |
| GTTTCTCTTGGCAATAGTAA+TGG | - | chr1_4:6587913-6587932 | None:intergenic | 35.0% | |
| CTCTAGTCTATGTTAATGCA+TGG | + | chr1_4:6587977-6587996 | Msa0146840:intron | 35.0% | |
| GAACTCATAAAGAACCTTTC+AGG | - | chr1_4:6588051-6588070 | None:intergenic | 35.0% | |
| AAGGTTCTTTATGAGTTCAG+TGG | + | chr1_4:6588053-6588072 | Msa0146840:intron | 35.0% | |
| !! | TGAGTTCAGTGGATTTTAAG+GGG | + | chr1_4:6588064-6588083 | Msa0146840:intron | 35.0% |
| GAGTTAATTCCATTTGGAAG+TGG | + | chr1_4:6588096-6588115 | Msa0146840:intron | 35.0% | |
| ATTCTTCTTCCACTTCCAAA+TGG | - | chr1_4:6588108-6588127 | None:intergenic | 35.0% | |
| ! | TTTTGACAAGGAACAAGTGT+TGG | + | chr1_4:6588215-6588234 | Msa0146840:intron | 35.0% |
| TTGGATACAAAAGTGAAACC+AGG | + | chr1_4:6588234-6588253 | Msa0146840:intron | 35.0% | |
| ! | GTTTTCTTTTCCTAGGAACA+AGG | - | chr1_4:6588290-6588309 | None:intergenic | 35.0% |
| TCCTAGGAAAAGAAAACCAT+AGG | + | chr1_4:6588293-6588312 | Msa0146840:intron | 35.0% | |
| ! | TCCTATGGTTTTCTTTTCCT+AGG | - | chr1_4:6588297-6588316 | None:intergenic | 35.0% |
| TGTCAATAGTACACATCCTA+TGG | - | chr1_4:6588312-6588331 | None:intergenic | 35.0% | |
| ! | ATCATTTTCCATTGTTGGGT+TGG | + | chr1_4:6586682-6586701 | Msa0146840:CDS | 35.0% |
| ! | TCATTTTCCATTGTTGGGTT+GGG | + | chr1_4:6586683-6586702 | Msa0146840:CDS | 35.0% |
| GATAGAATCAAAGGAACTCT+TGG | + | chr1_4:6586708-6586727 | Msa0146840:CDS | 35.0% | |
| GAGGCTTCATAAAACATTCA+AGG | + | chr1_4:6586731-6586750 | Msa0146840:CDS | 35.0% | |
| TGTGGTCATCAATAACTCTT+TGG | - | chr1_4:6586773-6586792 | None:intergenic | 35.0% | |
| ! | AAGAGTTATTGATGACCACA+TGG | + | chr1_4:6586773-6586792 | Msa0146840:CDS | 35.0% |
| ! | TTTTCTCCTTGCAAGGTAAA+CGG | + | chr1_4:6587021-6587040 | Msa0146840:intron | 35.0% |
| GTGTCAGGATTTAGTAAAGA+CGG | - | chr1_4:6587060-6587079 | None:intergenic | 35.0% | |
| !! | ACGAATCAAAGTTGGTATAC+TGG | - | chr1_4:6587090-6587109 | None:intergenic | 35.0% |
| ACAACATGACGAATCAAAGT+TGG | - | chr1_4:6587098-6587117 | None:intergenic | 35.0% | |
| ! | CTAATTGTGGTAAGTTCTAG+CGG | - | chr1_4:6587137-6587156 | None:intergenic | 35.0% |
| GCAATAGATGATCCTAATTG+TGG | - | chr1_4:6587150-6587169 | None:intergenic | 35.0% | |
| AATGTTTGAATCCTTTGCAC+CGG | - | chr1_4:6587249-6587268 | None:intergenic | 35.0% | |
| ATGAAATAGAAGGTGAAGAG+GGG | - | chr1_4:6587610-6587629 | None:intergenic | 35.0% | |
| ATGCAGAACATCTTTATTGC+AGG | + | chr1_4:6587694-6587713 | Msa0146840:intron | 35.0% | |
| AAGTTCAGCAGTAATGGTTT+GGG | + | chr1_4:6587726-6587745 | Msa0146840:intron | 35.0% | |
| AGTGATGAACAAGGTTCAAA+TGG | + | chr1_4:6587777-6587796 | Msa0146840:intron | 35.0% | |
| !! | TTCACCACTGCTTTAAGATA+AGG | - | chr1_4:6587862-6587881 | None:intergenic | 35.0% |
| GTTTCTCTTGGCAATAGTAA+TGG | - | chr1_4:6587913-6587932 | None:intergenic | 35.0% | |
| CTCTAGTCTATGTTAATGCA+TGG | + | chr1_4:6587977-6587996 | Msa0146840:intron | 35.0% | |
| GAACTCATAAAGAACCTTTC+AGG | - | chr1_4:6588051-6588070 | None:intergenic | 35.0% | |
| AAGGTTCTTTATGAGTTCAG+TGG | + | chr1_4:6588053-6588072 | Msa0146840:intron | 35.0% | |
| !! | TGAGTTCAGTGGATTTTAAG+GGG | + | chr1_4:6588064-6588083 | Msa0146840:intron | 35.0% |
| GAGTTAATTCCATTTGGAAG+TGG | + | chr1_4:6588096-6588115 | Msa0146840:intron | 35.0% | |
| ATTCTTCTTCCACTTCCAAA+TGG | - | chr1_4:6588108-6588127 | None:intergenic | 35.0% | |
| ! | TTTTGACAAGGAACAAGTGT+TGG | + | chr1_4:6588215-6588234 | Msa0146840:intron | 35.0% |
| TTGGATACAAAAGTGAAACC+AGG | + | chr1_4:6588234-6588253 | Msa0146840:intron | 35.0% | |
| ! | GTTTTCTTTTCCTAGGAACA+AGG | - | chr1_4:6588290-6588309 | None:intergenic | 35.0% |
| TCCTAGGAAAAGAAAACCAT+AGG | + | chr1_4:6588293-6588312 | Msa0146840:intron | 35.0% | |
| ! | TCCTATGGTTTTCTTTTCCT+AGG | - | chr1_4:6588297-6588316 | None:intergenic | 35.0% |
| TGTCAATAGTACACATCCTA+TGG | - | chr1_4:6588312-6588331 | None:intergenic | 35.0% | |
| GAAGAAGTTGAATTGGGAAG+TGG | + | chr1_4:6586588-6586607 | Msa0146840:CDS | 40.0% | |
| TTGAATTGGGAAGTGGACAA+AGG | + | chr1_4:6586595-6586614 | Msa0146840:CDS | 40.0% | |
| !! | GGTTGGGTTGATAGAATCAA+AGG | + | chr1_4:6586699-6586718 | Msa0146840:CDS | 40.0% |
| ACCACATGGATAATTCAGCA+AGG | + | chr1_4:6586787-6586806 | Msa0146840:CDS | 40.0% | |
| TTCAGCAAGGCCTAAAACTA+AGG | + | chr1_4:6586800-6586819 | Msa0146840:CDS | 40.0% | |
| AATAAATCCACGGTGAAAGG+AGG | - | chr1_4:6586986-6587005 | None:intergenic | 40.0% | |
| ! | GAACATGTTTTCTCCTTGCA+AGG | + | chr1_4:6587014-6587033 | Msa0146840:intron | 40.0% |
| !! | AAGTTGGTATACTGGTTGAG+AGG | - | chr1_4:6587082-6587101 | None:intergenic | 40.0% |
| ! | TTGATTCGTCATGTTGTGAG+AGG | + | chr1_4:6587101-6587120 | Msa0146840:intron | 40.0% |
| CGCTAGAACTTACCACAATT+AGG | + | chr1_4:6587135-6587154 | Msa0146840:intron | 40.0% | |
| AGACACAAGTTCAGCAGTAA+TGG | + | chr1_4:6587720-6587739 | Msa0146840:intron | 40.0% | |
| CAAGTTCAGCAGTAATGGTT+TGG | + | chr1_4:6587725-6587744 | Msa0146840:intron | 40.0% | |
| CAATCCAAGAGTGATGAACA+AGG | + | chr1_4:6587768-6587787 | Msa0146840:intron | 40.0% | |
| TGAACCTTGTTCATCACTCT+TGG | - | chr1_4:6587775-6587794 | None:intergenic | 40.0% | |
| GCTTCCTTATCTTAAAGCAG+TGG | + | chr1_4:6587855-6587874 | Msa0146840:intron | 40.0% | |
| !! | GCAATAGTAATGGTGATGGA+GGG | - | chr1_4:6587903-6587922 | None:intergenic | 40.0% |
| CTTGGCAATAGTAATGGTGA+TGG | - | chr1_4:6587907-6587926 | None:intergenic | 40.0% | |
| AATGTGTCCTGCAATGAACA+TGG | + | chr1_4:6588125-6588144 | Msa0146840:intron | 40.0% | |
| ATGTGTCCTGCAATGAACAT+GGG | + | chr1_4:6588126-6588145 | Msa0146840:intron | 40.0% | |
| TGTTCCTTGTCAAAACCATG+AGG | - | chr1_4:6588210-6588229 | None:intergenic | 40.0% | |
| TTGATCTTCACCTTGTTCCT+AGG | + | chr1_4:6588277-6588296 | Msa0146840:intron | 40.0% | |
| GAAGAAGTTGAATTGGGAAG+TGG | + | chr1_4:6586588-6586607 | Msa0146840:CDS | 40.0% | |
| TTGAATTGGGAAGTGGACAA+AGG | + | chr1_4:6586595-6586614 | Msa0146840:CDS | 40.0% | |
| !! | GGTTGGGTTGATAGAATCAA+AGG | + | chr1_4:6586699-6586718 | Msa0146840:CDS | 40.0% |
| ACCACATGGATAATTCAGCA+AGG | + | chr1_4:6586787-6586806 | Msa0146840:CDS | 40.0% | |
| TTCAGCAAGGCCTAAAACTA+AGG | + | chr1_4:6586800-6586819 | Msa0146840:CDS | 40.0% | |
| AATAAATCCACGGTGAAAGG+AGG | - | chr1_4:6586986-6587005 | None:intergenic | 40.0% | |
| ! | GAACATGTTTTCTCCTTGCA+AGG | + | chr1_4:6587014-6587033 | Msa0146840:intron | 40.0% |
| !! | AAGTTGGTATACTGGTTGAG+AGG | - | chr1_4:6587082-6587101 | None:intergenic | 40.0% |
| ! | TTGATTCGTCATGTTGTGAG+AGG | + | chr1_4:6587101-6587120 | Msa0146840:intron | 40.0% |
| CGCTAGAACTTACCACAATT+AGG | + | chr1_4:6587135-6587154 | Msa0146840:intron | 40.0% | |
| AGACACAAGTTCAGCAGTAA+TGG | + | chr1_4:6587720-6587739 | Msa0146840:intron | 40.0% | |
| CAAGTTCAGCAGTAATGGTT+TGG | + | chr1_4:6587725-6587744 | Msa0146840:intron | 40.0% | |
| CAATCCAAGAGTGATGAACA+AGG | + | chr1_4:6587768-6587787 | Msa0146840:intron | 40.0% | |
| TGAACCTTGTTCATCACTCT+TGG | - | chr1_4:6587775-6587794 | None:intergenic | 40.0% | |
| GCTTCCTTATCTTAAAGCAG+TGG | + | chr1_4:6587855-6587874 | Msa0146840:intron | 40.0% | |
| !! | GCAATAGTAATGGTGATGGA+GGG | - | chr1_4:6587903-6587922 | None:intergenic | 40.0% |
| CTTGGCAATAGTAATGGTGA+TGG | - | chr1_4:6587907-6587926 | None:intergenic | 40.0% | |
| AATGTGTCCTGCAATGAACA+TGG | + | chr1_4:6588125-6588144 | Msa0146840:intron | 40.0% | |
| ATGTGTCCTGCAATGAACAT+GGG | + | chr1_4:6588126-6588145 | Msa0146840:intron | 40.0% | |
| TGTTCCTTGTCAAAACCATG+AGG | - | chr1_4:6588210-6588229 | None:intergenic | 40.0% | |
| TTGATCTTCACCTTGTTCCT+AGG | + | chr1_4:6588277-6588296 | Msa0146840:intron | 40.0% | |
| CTATCAACCCAACCCAACAA+TGG | - | chr1_4:6586693-6586712 | None:intergenic | 45.0% | |
| GAATCAAAGGAACTCTTGGG+AGG | + | chr1_4:6586712-6586731 | Msa0146840:CDS | 45.0% | |
| GCCTTGCTGAATTATCCATG+TGG | - | chr1_4:6586791-6586810 | None:intergenic | 45.0% | |
| ! | CCATAAGCACAGCTTTGATG+TGG | - | chr1_4:6586905-6586924 | None:intergenic | 45.0% |
| CCACATCAAAGCTGTGCTTA+TGG | + | chr1_4:6586902-6586921 | Msa0146840:CDS | 45.0% | |
| !! | TATACTGGTTGAGAGGTGTC+AGG | - | chr1_4:6587075-6587094 | None:intergenic | 45.0% |
| ! | CTGATTTGAGCTGAGCGTTA+AGG | + | chr1_4:6587435-6587454 | Msa0146840:intron | 45.0% |
| !! | GGCAATAGTAATGGTGATGG+AGG | - | chr1_4:6587904-6587923 | None:intergenic | 45.0% |
| TTAATGCATGGGCCATAGCA+AGG | + | chr1_4:6587989-6588008 | Msa0146840:intron | 45.0% | |
| TAATGCATGGGCCATAGCAA+GGG | + | chr1_4:6587990-6588009 | Msa0146840:intron | 45.0% | |
| ATTCTCAGGATCCCTTGCTA+TGG | - | chr1_4:6588004-6588023 | None:intergenic | 45.0% | |
| TAGCAAGGGATCCTGAGAAT+TGG | + | chr1_4:6588004-6588023 | Msa0146840:intron | 45.0% | |
| TCAGGGTCATTCCAATTCTC+AGG | - | chr1_4:6588018-6588037 | None:intergenic | 45.0% | |
| TGTGTCCTGCAATGAACATG+GGG | + | chr1_4:6588127-6588146 | Msa0146840:intron | 45.0% | |
| TTTGATTGGAAGCTGCCTCA+TGG | + | chr1_4:6588192-6588211 | Msa0146840:intron | 45.0% | |
| CTATCAACCCAACCCAACAA+TGG | - | chr1_4:6586693-6586712 | None:intergenic | 45.0% | |
| GAATCAAAGGAACTCTTGGG+AGG | + | chr1_4:6586712-6586731 | Msa0146840:CDS | 45.0% | |
| GCCTTGCTGAATTATCCATG+TGG | - | chr1_4:6586791-6586810 | None:intergenic | 45.0% | |
| ! | CCATAAGCACAGCTTTGATG+TGG | - | chr1_4:6586905-6586924 | None:intergenic | 45.0% |
| CCACATCAAAGCTGTGCTTA+TGG | + | chr1_4:6586902-6586921 | Msa0146840:CDS | 45.0% | |
| !! | TATACTGGTTGAGAGGTGTC+AGG | - | chr1_4:6587075-6587094 | None:intergenic | 45.0% |
| ! | CTGATTTGAGCTGAGCGTTA+AGG | + | chr1_4:6587435-6587454 | Msa0146840:intron | 45.0% |
| !! | GGCAATAGTAATGGTGATGG+AGG | - | chr1_4:6587904-6587923 | None:intergenic | 45.0% |
| TTAATGCATGGGCCATAGCA+AGG | + | chr1_4:6587989-6588008 | Msa0146840:intron | 45.0% | |
| TAATGCATGGGCCATAGCAA+GGG | + | chr1_4:6587990-6588009 | Msa0146840:intron | 45.0% | |
| ATTCTCAGGATCCCTTGCTA+TGG | - | chr1_4:6588004-6588023 | None:intergenic | 45.0% | |
| TAGCAAGGGATCCTGAGAAT+TGG | + | chr1_4:6588004-6588023 | Msa0146840:intron | 45.0% | |
| TCAGGGTCATTCCAATTCTC+AGG | - | chr1_4:6588018-6588037 | None:intergenic | 45.0% | |
| TGTGTCCTGCAATGAACATG+GGG | + | chr1_4:6588127-6588146 | Msa0146840:intron | 45.0% | |
| TTTGATTGGAAGCTGCCTCA+TGG | + | chr1_4:6588192-6588211 | Msa0146840:intron | 45.0% | |
| !! | AAAAAAAAAAAAAACAAATA+AGG | - | chr1_4:6586939-6586958 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTGAA+TGG | - | chr1_4:6587476-6587495 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAACAAATA+AGG | - | chr1_4:6586939-6586958 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTGAA+TGG | - | chr1_4:6587476-6587495 | None:intergenic | 5.0% |
| AGTCATACCTCCTTTCACCG+TGG | + | chr1_4:6586976-6586995 | Msa0146840:intron | 50.0% | |
| ! | GACATGCCGTTTACCTTGCA+AGG | - | chr1_4:6587030-6587049 | None:intergenic | 50.0% |
| ! | GTGGTAAGTTCTAGCGGTTG+TGG | - | chr1_4:6587131-6587150 | None:intergenic | 50.0% |
| GCTGCACGATTGGATATGAC+TGG | - | chr1_4:6587227-6587246 | None:intergenic | 50.0% | |
| GTCATATCCAATCGTGCAGC+CGG | + | chr1_4:6587227-6587246 | Msa0146840:intron | 50.0% | |
| TGAGCTGAGCGTTAAGGAGT+TGG | + | chr1_4:6587441-6587460 | Msa0146840:intron | 50.0% | |
| GTGTCCTGCAATGAACATGG+GGG | + | chr1_4:6588128-6588147 | Msa0146840:intron | 50.0% | |
| ATCACCCCCATGTTCATTGC+AGG | - | chr1_4:6588135-6588154 | None:intergenic | 50.0% | |
| !!! | GCTGCCTCATGGTTTTGACA+AGG | + | chr1_4:6588203-6588222 | Msa0146840:intron | 50.0% |
| AGTCATACCTCCTTTCACCG+TGG | + | chr1_4:6586976-6586995 | Msa0146840:intron | 50.0% | |
| ! | GACATGCCGTTTACCTTGCA+AGG | - | chr1_4:6587030-6587049 | None:intergenic | 50.0% |
| ! | GTGGTAAGTTCTAGCGGTTG+TGG | - | chr1_4:6587131-6587150 | None:intergenic | 50.0% |
| GCTGCACGATTGGATATGAC+TGG | - | chr1_4:6587227-6587246 | None:intergenic | 50.0% | |
| GTCATATCCAATCGTGCAGC+CGG | + | chr1_4:6587227-6587246 | Msa0146840:intron | 50.0% | |
| TGAGCTGAGCGTTAAGGAGT+TGG | + | chr1_4:6587441-6587460 | Msa0146840:intron | 50.0% | |
| GTGTCCTGCAATGAACATGG+GGG | + | chr1_4:6588128-6588147 | Msa0146840:intron | 50.0% | |
| ATCACCCCCATGTTCATTGC+AGG | - | chr1_4:6588135-6588154 | None:intergenic | 50.0% | |
| !!! | GCTGCCTCATGGTTTTGACA+AGG | + | chr1_4:6588203-6588222 | Msa0146840:intron | 50.0% |
| GCTGAGCGTTAAGGAGTTGG+AGG | + | chr1_4:6587444-6587463 | Msa0146840:intron | 55.0% | |
| GCTGAGCGTTAAGGAGTTGG+AGG | + | chr1_4:6587444-6587463 | Msa0146840:intron | 55.0% | |
| !! | CTTTGCACCGGCTGCACGAT+TGG | - | chr1_4:6587237-6587256 | None:intergenic | 60.0% |
| CAATCGTGCAGCCGGTGCAA+AGG | + | chr1_4:6587235-6587254 | Msa0146840:intron | 60.0% | |
| !! | CTTTGCACCGGCTGCACGAT+TGG | - | chr1_4:6587237-6587256 | None:intergenic | 60.0% |
| CAATCGTGCAGCCGGTGCAA+AGG | + | chr1_4:6587235-6587254 | Msa0146840:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6586459 | 6588385 | 6586459 | ID=Msa0146840;Name=Msa0146840 |
| chr1_4 | mRNA | 6586459 | 6588385 | 6586459 | ID=Msa0146840-mRNA-1;Parent=Msa0146840;Name=Msa0146840-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|0.5|1|1|2|0|157 |
| chr1_4 | exon | 6586459 | 6586923 | 6586459 | ID=Msa0146840-mRNA-1:exon:2833;Parent=Msa0146840-mRNA-1 |
| chr1_4 | exon | 6588377 | 6588385 | 6588377 | ID=Msa0146840-mRNA-1:exon:2834;Parent=Msa0146840-mRNA-1 |
| chr1_4 | CDS | 6586459 | 6586923 | 6586459 | ID=Msa0146840-mRNA-1:cds;Parent=Msa0146840-mRNA-1 |
| chr1_4 | CDS | 6588377 | 6588385 | 6588377 | ID=Msa0146840-mRNA-1:cds;Parent=Msa0146840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
