Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175720 | G7I414 | 98.305 | 177 | 3 | 0 | 24 | 200 | 1 | 177 | 1.09e-125 | 361 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006820 | Msa0175720 | 0.849579 | 2.954213e-60 | -8.615850e-47 |
| Msa0039920 | Msa0175720 | 0.862930 | 3.574164e-64 | -8.615850e-47 |
| Msa0040090 | Msa0175720 | 0.830047 | 3.658280e-55 | -8.615850e-47 |
| Msa0042250 | Msa0175720 | 0.812169 | 4.854511e-51 | -8.615850e-47 |
| Msa0047470 | Msa0175720 | 0.810434 | 1.154853e-50 | -8.615850e-47 |
| Msa0050500 | Msa0175720 | 0.849164 | 3.855010e-60 | -8.615850e-47 |
| Msa0087580 | Msa0175720 | 0.839288 | 1.733647e-57 | -8.615850e-47 |
| Msa0087780 | Msa0175720 | 0.836546 | 8.783350e-57 | -8.615850e-47 |
| Msa0087790 | Msa0175720 | 0.853971 | 1.678805e-61 | -8.615850e-47 |
| Msa0096020 | Msa0175720 | 0.817564 | 3.088846e-52 | -8.615850e-47 |
| Msa0100910 | Msa0175720 | 0.830481 | 2.865790e-55 | -8.615850e-47 |
| Msa0102130 | Msa0175720 | 0.830991 | 2.149586e-55 | -8.615850e-47 |
| Msa0134300 | Msa0175720 | 0.839419 | 1.602322e-57 | -8.615850e-47 |
| Msa0134380 | Msa0175720 | 0.827400 | 1.597615e-54 | -8.615850e-47 |
| Msa0134390 | Msa0175720 | 0.808637 | 2.808351e-50 | -8.615850e-47 |
| Msa0134420 | Msa0175720 | 0.838732 | 2.414301e-57 | -8.615850e-47 |
| Msa0146840 | Msa0175720 | 0.823316 | 1.479225e-53 | -8.615850e-47 |
| Msa0175720 | Msa0180590 | 0.807873 | 4.086450e-50 | -8.615850e-47 |
| Msa0175720 | Msa0180600 | 0.855468 | 6.184679e-62 | -8.615850e-47 |
| Msa0175720 | Msa0180780 | 0.849138 | 3.920224e-60 | -8.615850e-47 |
| Msa0175720 | Msa0189880 | 0.821867 | 3.213954e-53 | -8.615850e-47 |
| Msa0175720 | Msa0197730 | 0.810709 | 1.007488e-50 | -8.615850e-47 |
| Msa0175720 | Msa0203180 | 0.809386 | 1.941617e-50 | -8.615850e-47 |
| Msa0175720 | Msa0216010 | 0.827875 | 1.228692e-54 | -8.615850e-47 |
| Msa0175720 | Msa0216560 | 0.803359 | 3.619230e-49 | -8.615850e-47 |
| Msa0175720 | Msa0230980 | 0.819759 | 9.809835e-53 | -8.615850e-47 |
| Msa0175720 | Msa0246300 | 0.812946 | 3.281355e-51 | -8.615850e-47 |
| Msa0175720 | Msa0256170 | 0.815527 | 8.830426e-52 | -8.615850e-47 |
| Msa0175720 | Msa0256430 | 0.809172 | 2.157576e-50 | -8.615850e-47 |
| Msa0175720 | Msa0270460 | 0.826895 | 2.109932e-54 | -8.615850e-47 |
| Msa0175720 | Msa0295270 | 0.805606 | 1.231044e-49 | -8.615850e-47 |
| Msa0175720 | Msa0295840 | 0.826285 | 2.950976e-54 | -8.615850e-47 |
| Msa0175720 | Msa0309060 | 0.833795 | 4.344027e-56 | -8.615850e-47 |
| Msa0175720 | Msa0310490 | 0.818990 | 1.468578e-52 | -8.615850e-47 |
| Msa0175720 | Msa0421800 | 0.817415 | 3.336498e-52 | -8.615850e-47 |
| Msa0175720 | Msa0423110 | 0.806146 | 9.479149e-50 | -8.615850e-47 |
| Msa0175720 | Msa0426860 | 0.811155 | 8.062458e-51 | -8.615850e-47 |
| Msa0175720 | Msa0427050 | 0.814145 | 1.788676e-51 | -8.615850e-47 |
| Msa0175720 | Msa0448400 | 0.811245 | 7.708898e-51 | -8.615850e-47 |
| Msa0175720 | Msa0456480 | 0.850417 | 1.721043e-60 | -8.615850e-47 |
| Msa0175720 | Msa0467800 | 0.827333 | 1.658111e-54 | -8.615850e-47 |
| Msa0175720 | Msa0467880 | 0.816927 | 4.296455e-52 | -8.615850e-47 |
| Msa0175720 | Msa0473320 | 0.801798 | 7.596250e-49 | -8.615850e-47 |
| Msa0175720 | Msa0473450 | 0.805845 | 1.096685e-49 | -8.615850e-47 |
| Msa0175720 | Msa0488850 | 0.805011 | 1.639772e-49 | -8.615850e-47 |
| Msa0175720 | Msa0514260 | 0.810793 | 9.659375e-51 | -8.615850e-47 |
| Msa0175720 | Msa0534420 | 0.847069 | 1.459839e-59 | -8.615850e-47 |
| Msa0175720 | Msa0549330 | 0.807126 | 5.884560e-50 | -8.615850e-47 |
| Msa0175720 | Msa0580540 | 0.834927 | 2.258106e-56 | -8.615850e-47 |
| Msa0175720 | Msa0615850 | 0.820099 | 8.201425e-53 | -8.615850e-47 |
| Msa0175720 | Msa0620750 | 0.833768 | 4.410318e-56 | -8.615850e-47 |
| Msa0175720 | Msa0621780 | 0.838101 | 3.511622e-57 | -8.615850e-47 |
| Msa0175720 | Msa0659960 | 0.807964 | 3.907228e-50 | -8.615850e-47 |
| Msa0175720 | Msa0698900 | 0.836998 | 6.737610e-57 | -8.615850e-47 |
| Msa0175720 | Msa0736930 | 0.834221 | 3.396713e-56 | -8.615850e-47 |
| Msa0175720 | Msa0739610 | 0.808927 | 2.434441e-50 | -8.615850e-47 |
| Msa0175720 | Msa0754350 | 0.844606 | 6.814733e-59 | -8.615850e-47 |
| Msa0175720 | Msa0787720 | 0.811818 | 5.787292e-51 | -8.615850e-47 |
| Msa0175720 | Msa0795710 | 0.837329 | 5.542704e-57 | -8.615850e-47 |
| Msa0175720 | Msa0824770 | 0.818734 | 1.679251e-52 | -8.615850e-47 |
| Msa0175720 | Msa0833450 | 0.838145 | 3.422164e-57 | -8.615850e-47 |
| Msa0175720 | Msa0887070 | 0.803889 | 2.810015e-49 | -8.615850e-47 |
| Msa0175720 | Msa0897390 | 0.801916 | 7.183477e-49 | -8.615850e-47 |
| Msa0175720 | Msa0913120 | 0.822268 | 2.593527e-53 | -8.615850e-47 |
| Msa0175720 | Msa0930950 | 0.815783 | 7.745698e-52 | -8.615850e-47 |
| Msa0175720 | Msa0934830 | 0.800123 | 1.670527e-48 | -8.615850e-47 |
| Msa0175720 | Msa0950410 | 0.807525 | 4.844181e-50 | -8.615850e-47 |
| Msa0175720 | Msa0971860 | 0.804808 | 1.808229e-49 | -8.615850e-47 |
| Msa0175720 | Msa0982590 | 0.870600 | 1.290982e-66 | -8.615850e-47 |
| Msa0175720 | Msa1044330 | 0.812890 | 3.375507e-51 | -8.615850e-47 |
| Msa0175720 | Msa1102180 | 0.815812 | 7.629704e-52 | -8.615850e-47 |
| Msa0175720 | Msa1102200 | 0.822481 | 2.314998e-53 | -8.615850e-47 |
| Msa0175720 | Msa1138600 | 0.801836 | 7.462167e-49 | -8.615850e-47 |
| Msa0175720 | Msa1173410 | 0.802387 | 5.746270e-49 | -8.615850e-47 |
| Msa0175720 | Msa1195860 | 0.815715 | 8.019122e-52 | -8.615850e-47 |
| Msa0175720 | Msa1218720 | 0.802366 | 5.805262e-49 | -8.615850e-47 |
| Msa0175720 | Msa1220740 | 0.840498 | 8.387372e-58 | -8.615850e-47 |
| Msa0175720 | Msa1242010 | 0.808213 | 3.458531e-50 | -8.615850e-47 |
| Msa0175720 | Msa1242990 | 0.814502 | 1.491212e-51 | -8.615850e-47 |
| Msa0175720 | Msa1248400 | 0.821914 | 3.133427e-53 | -8.615850e-47 |
| Msa0175720 | Msa1286910 | 0.814375 | 1.590978e-51 | -8.615850e-47 |
| Msa0175720 | Msa1306700 | 0.848542 | 5.736758e-60 | -8.615850e-47 |
| Msa0175720 | Msa1322420 | 0.823205 | 1.570391e-53 | -8.615850e-47 |
| Msa0175720 | Msa1323920 | 0.801088 | 1.061890e-48 | -8.615850e-47 |
| Msa0175720 | Msa1327040 | 0.822820 | 1.930336e-53 | -8.615850e-47 |
| Msa0175720 | Msa1327820 | 0.830202 | 3.354152e-55 | -8.615850e-47 |
| Msa0175720 | Msa1334650 | 0.833075 | 6.569347e-56 | -8.615850e-47 |
| Msa0175720 | Msa1342400 | 0.831316 | 1.788972e-55 | -8.615850e-47 |
| Msa0175720 | Msa1349850 | 0.809148 | 2.183137e-50 | -8.615850e-47 |
| Msa0175720 | Msa1365210 | 0.827585 | 1.442230e-54 | -8.615850e-47 |
| Msa0175720 | Msa1368180 | 0.804954 | 1.685476e-49 | -8.615850e-47 |
| Msa0175720 | Msa1403950 | 0.830075 | 3.601767e-55 | -8.615850e-47 |
| Msa0175720 | Msa1413220 | 0.806180 | 9.324164e-50 | -8.615850e-47 |
| Msa0175720 | Msa1435470 | 0.812807 | 3.520500e-51 | -8.615850e-47 |
| Msa0175720 | Msa1440180 | 0.800127 | 1.667575e-48 | -8.615850e-47 |
| Msa0175720 | Msa1452200 | 0.800268 | 1.560950e-48 | -8.615850e-47 |
| Msa0175720 | Msa1458920 | 0.810937 | 8.992316e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175720 | MtrunA17_Chr1g0197111 | 98.246 | 171 | 3 | 0 | 30 | 200 | 2 | 172 | 1.22e-124 | 348 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175720 | AT5G04830.1 | 68.000 | 175 | 56 | 0 | 24 | 198 | 1 | 175 | 3.52e-88 | 257 |
| Msa0175720 | AT5G04830.2 | 68.000 | 175 | 56 | 0 | 24 | 198 | 1 | 175 | 3.52e-88 | 257 |
Find 72 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTTACTTTAATGTTAT+AGG | 0.178055 | 1_4:+61838921 | Msa0175720:three_prime_UTR |
| TAACTATATCGATACTTATC+TGG | 0.206637 | 1_4:-61838656 | None:intergenic |
| AATGAAGATGGGAGTGAAAA+TGG | 0.263009 | 1_4:+61838854 | Msa0175720:three_prime_UTR |
| GTACTTTGTTCAATAACTTT+TGG | 0.285964 | 1_4:+61838792 | Msa0175720:three_prime_UTR |
| AATAATATTCTCTCTGTATA+TGG | 0.303134 | 1_4:+61838716 | Msa0175720:three_prime_UTR |
| ATCTTGAGCTTTATTATAAA+CGG | 0.308679 | 1_4:+61838508 | Msa0175720:three_prime_UTR |
| GCCAAGCAATGGCAGCTTTA+CGG | 0.310362 | 1_4:-61838382 | None:intergenic |
| ACGGTTTCTCGATTAGAAAT+TGG | 0.320559 | 1_4:-61838363 | None:intergenic |
| TGCCCCAGATGCTTCCTTTG+AGG | 0.337499 | 1_4:+61836612 | Msa0175720:CDS |
| CTCATGTGTTTATGAGGTTC+GGG | 0.344969 | 1_4:+61838445 | Msa0175720:CDS |
| TAAACAACACTATAAAATCT+TGG | 0.356459 | 1_4:+61838167 | Msa0175720:CDS |
| AAACAACACTATAAAATCTT+GGG | 0.358378 | 1_4:+61838168 | Msa0175720:CDS |
| ACTCATGTGTTTATGAGGTT+CGG | 0.375084 | 1_4:+61838444 | Msa0175720:CDS |
| CATACCCTTGTGCACGCATA+AGG | 0.386726 | 1_4:-61836639 | None:intergenic |
| GGATCCTCAAAGGAAGCATC+TGG | 0.400063 | 1_4:-61836616 | None:intergenic |
| ATCCTAGTTATTCAAACAGT+TGG | 0.403386 | 1_4:-61838474 | None:intergenic |
| GAAGGTTGATATAATGAAGA+TGG | 0.407867 | 1_4:+61838842 | Msa0175720:three_prime_UTR |
| TCTTGAGCTTTATTATAAAC+GGG | 0.408619 | 1_4:+61838509 | Msa0175720:three_prime_UTR |
| TTGATTTATATATGAAATGA+AGG | 0.413143 | 1_4:-61835625 | None:intergenic |
| CTTGGGGAAGGATATAGATA+TGG | 0.432777 | 1_4:+61838185 | Msa0175720:CDS |
| AGAAAATTTGCAATGGATGC+TGG | 0.436427 | 1_4:+61835713 | Msa0175720:CDS |
| ATACCCTTGTGCACGCATAA+GGG | 0.439382 | 1_4:-61836638 | None:intergenic |
| TTTGAATTATAAATACATAT+AGG | 0.449661 | 1_4:-61838686 | None:intergenic |
| GACTAGATACTTGGCGTCGT+TGG | 0.459334 | 1_4:+61838543 | Msa0175720:three_prime_UTR |
| TAGCAACTCATGTGTTTATG+AGG | 0.462800 | 1_4:+61838439 | Msa0175720:CDS |
| ACCGTAAAGCTGCCATTGCT+TGG | 0.469791 | 1_4:+61838381 | Msa0175720:CDS |
| AATATAGTTTCACCAGGAAA+AGG | 0.472637 | 1_4:+61838008 | Msa0175720:CDS |
| AAGGTTGATATAATGAAGAT+GGG | 0.494698 | 1_4:+61838843 | Msa0175720:three_prime_UTR |
| TGTACATGAGACTAGATACT+TGG | 0.508230 | 1_4:+61838534 | Msa0175720:three_prime_UTR |
| AAGTTATTCGCCATGAGGAC+TGG | 0.509945 | 1_4:+61838241 | Msa0175720:CDS |
| CATGGCCACGTTGAAGGCCA+AGG | 0.513097 | 1_4:+61835528 | None:intergenic |
| ACGAAGAATATGAGGAATGA+TGG | 0.519999 | 1_4:-61835889 | None:intergenic |
| TGATTTATATATGAAATGAA+GGG | 0.528423 | 1_4:-61835624 | None:intergenic |
| GGAAAGACAGAGAGAAGTTG+AGG | 0.529577 | 1_4:-61835690 | None:intergenic |
| GATCCTCAAAGGAAGCATCT+GGG | 0.532003 | 1_4:-61836615 | None:intergenic |
| AACTATATCGATACTTATCT+GGG | 0.534659 | 1_4:-61838655 | None:intergenic |
| GAAAGACAGAGAGAAGTTGA+GGG | 0.534700 | 1_4:-61835689 | None:intergenic |
| TCCTCTTCTTTCTCTTCCCG+CGG | 0.537181 | 1_4:+61835565 | Msa0175720:five_prime_UTR |
| GAGTTGCAGAAATGACTCGC+AGG | 0.539872 | 1_4:+61838406 | Msa0175720:CDS |
| GCTTACAGACGAAGAATATG+AGG | 0.543719 | 1_4:-61835897 | None:intergenic |
| GTTTAGCGAGTCAAAGATTG+TGG | 0.554023 | 1_4:+61837968 | Msa0175720:CDS |
| TCTTTCCAGAAAATTTGCAA+TGG | 0.557794 | 1_4:+61835706 | Msa0175720:CDS |
| GATCCCCTTATGCGTGCACA+AGG | 0.558146 | 1_4:+61836634 | Msa0175720:CDS |
| ATGAATGCTGAACTTCTATG+TGG | 0.562542 | 1_4:+61838603 | Msa0175720:three_prime_UTR |
| TACCCTTGTGCACGCATAAG+GGG | 0.564830 | 1_4:-61836637 | None:intergenic |
| AGCATTCTACTCTCTCCCTA+AGG | 0.568779 | 1_4:+61837578 | Msa0175720:CDS |
| GGAATGTGTTGGTGGCGCCT+TGG | 0.569407 | 1_4:-61835545 | None:intergenic |
| TCTATGTGGAACTTAACTTG+TGG | 0.571802 | 1_4:+61838617 | Msa0175720:three_prime_UTR |
| AAAGAAGAGGAATGTGTTGG+TGG | 0.574732 | 1_4:-61835553 | None:intergenic |
| GAGAAAGAAGAGGAATGTGT+TGG | 0.575607 | 1_4:-61835556 | None:intergenic |
| AATCAAGTTGTCTGTTGAGG+AGG | 0.578173 | 1_4:+61838215 | Msa0175720:CDS |
| ATCCAACTGTTTGAATAACT+AGG | 0.578652 | 1_4:+61838472 | Msa0175720:exon |
| GATTTCAAAATCGCGAGCCG+TGG | 0.585966 | 1_4:-61836587 | None:intergenic |
| TGCGAGTCATTTCTGCAACT+CGG | 0.586117 | 1_4:-61838404 | None:intergenic |
| ACGCATAAGGGGATCCTCAA+AGG | 0.592676 | 1_4:-61836626 | None:intergenic |
| ATCCTCAAAGGAAGCATCTG+GGG | 0.592747 | 1_4:-61836614 | None:intergenic |
| TTAATACATACCAGTCCTCA+TGG | 0.594288 | 1_4:-61838251 | None:intergenic |
| GCTAATCAAGTTGTCTGTTG+AGG | 0.594764 | 1_4:+61838212 | Msa0175720:CDS |
| TCTGCAACTCGGCCAAGCAA+TGG | 0.600748 | 1_4:-61838393 | None:intergenic |
| ACACTATAAAATCTTGGGGA+AGG | 0.605202 | 1_4:+61838173 | Msa0175720:CDS |
| ATCAAGTTGTCTGTTGAGGA+GGG | 0.610196 | 1_4:+61838216 | Msa0175720:CDS |
| AACAACACTATAAAATCTTG+GGG | 0.612536 | 1_4:+61838169 | Msa0175720:CDS |
| AGTTGCAGAAATGACTCGCA+GGG | 0.615808 | 1_4:+61838407 | Msa0175720:CDS |
| GAAGAAAATATAGTTTCACC+AGG | 0.619089 | 1_4:+61838002 | Msa0175720:CDS |
| TTTAACATACAATATGACGA+TGG | 0.626235 | 1_4:-61838881 | None:intergenic |
| TGTGTTTATGAGGTTCGGGA+AGG | 0.634450 | 1_4:+61838449 | Msa0175720:CDS |
| CAGATATGGATCATGTGCCA+CGG | 0.643521 | 1_4:+61836570 | Msa0175720:intron |
| AGTTTCACCAGGAAAAGGAG+AGG | 0.669375 | 1_4:+61838013 | Msa0175720:CDS |
| ACCGCGGGAAGAGAAAGAAG+AGG | 0.680916 | 1_4:-61835566 | None:intergenic |
| GGGTAAAGTTATTCGCCATG+AGG | 0.689924 | 1_4:+61838236 | Msa0175720:CDS |
| ATCCCCTTATGCGTGCACAA+GGG | 0.714021 | 1_4:+61836635 | Msa0175720:CDS |
| GTTGCAGAAATGACTCGCAG+GGG | 0.731921 | 1_4:+61838408 | Msa0175720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTACTTTTTTTTAG+CGG | + | chr1_4:61836335-61836354 | Msa0175720:intron | 10.0% |
| !! | TTTGAATTATAAATACATAT+AGG | - | chr1_4:61838689-61838708 | None:intergenic | 10.0% |
| !! | TGATTTATATATGAAATGAA+GGG | - | chr1_4:61835627-61835646 | None:intergenic | 15.0% |
| !! | TTGATTTATATATGAAATGA+AGG | - | chr1_4:61835628-61835647 | None:intergenic | 15.0% |
| !! | AATATGATAGAAATACAAAT+TGG | - | chr1_4:61835954-61835973 | None:intergenic | 15.0% |
| !!! | CAAATTTTTTACTAGAAAAA+GGG | - | chr1_4:61837224-61837243 | None:intergenic | 15.0% |
| !!! | TTCAAATTCTGTTTTATTTA+TGG | + | chr1_4:61837481-61837500 | Msa0175720:intron | 15.0% |
| !!! | TTCTTTTTTCTTTAAGTTTT+GGG | + | chr1_4:61838741-61838760 | Msa0175720:three_prime_UTR | 15.0% |
| !! | TAACAAGAAAGAAAGAAATT+AGG | - | chr1_4:61835761-61835780 | None:intergenic | 20.0% |
| !!! | AGTAATAATTTGCTACATTA+TGG | - | chr1_4:61836414-61836433 | None:intergenic | 20.0% |
| !!! | TATTTTGTATTGACGATTTT+AGG | - | chr1_4:61836692-61836711 | None:intergenic | 20.0% |
| !! | CAATTTCATATTCTAACATA+TGG | - | chr1_4:61836979-61836998 | None:intergenic | 20.0% |
| !!! | GGAAATTGACAATTTTTTTT+AGG | - | chr1_4:61837198-61837217 | None:intergenic | 20.0% |
| !!! | GCAAATTTTTTACTAGAAAA+AGG | - | chr1_4:61837225-61837244 | None:intergenic | 20.0% |
| !! | GTAAAAAATTTGCCAATATT+TGG | + | chr1_4:61837232-61837251 | Msa0175720:intron | 20.0% |
| !! | TCAATAGGTTTATATTATTG+CGG | - | chr1_4:61837402-61837421 | None:intergenic | 20.0% |
| !! | ATTTGAATGATCTAAATAGT+TGG | - | chr1_4:61837468-61837487 | None:intergenic | 20.0% |
| !! | AACATCATGAAATATGAATT+TGG | - | chr1_4:61838127-61838146 | None:intergenic | 20.0% |
| !! | TAAACAACACTATAAAATCT+TGG | + | chr1_4:61838167-61838186 | Msa0175720:CDS | 20.0% |
| !! | AAACAACACTATAAAATCTT+GGG | + | chr1_4:61838168-61838187 | Msa0175720:CDS | 20.0% |
| !!! | GTTTTGTATTTACATCAAAT+AGG | + | chr1_4:61838328-61838347 | Msa0175720:intron | 20.0% |
| !!! | ATCTTGAGCTTTATTATAAA+CGG | + | chr1_4:61838508-61838527 | Msa0175720:three_prime_UTR | 20.0% |
| !! | AATAATATTCTCTCTGTATA+TGG | + | chr1_4:61838716-61838735 | Msa0175720:three_prime_UTR | 20.0% |
| !!! | GTTCTTTTTTCTTTAAGTTT+TGG | + | chr1_4:61838740-61838759 | Msa0175720:three_prime_UTR | 20.0% |
| ! | TTCCTTCAAATTCAAGAAAA+CGG | - | chr1_4:61835812-61835831 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTTTTAGCGGAA+TGG | + | chr1_4:61836340-61836359 | Msa0175720:intron | 25.0% |
| ! | TTATGGAAATAAACTTCTCA+CGG | - | chr1_4:61836397-61836416 | None:intergenic | 25.0% |
| ! | TTGAAGTTATAAGCAATACA+AGG | - | chr1_4:61836485-61836504 | None:intergenic | 25.0% |
| ! | TCTGGTATGATATTAAACAA+TGG | + | chr1_4:61836747-61836766 | Msa0175720:intron | 25.0% |
| ! | CTGGTATGATATTAAACAAT+GGG | + | chr1_4:61836748-61836767 | Msa0175720:intron | 25.0% |
| ! | TATGATATTAAACAATGGGA+AGG | + | chr1_4:61836752-61836771 | Msa0175720:intron | 25.0% |
| ! | AGGTGAACTATGAAATAAAT+TGG | + | chr1_4:61836809-61836828 | Msa0175720:intron | 25.0% |
| ! | TTGAATCTTAATCAGAAAAG+AGG | + | chr1_4:61836903-61836922 | Msa0175720:intron | 25.0% |
| ! | ACTACAGAATGATAAAGAAT+AGG | + | chr1_4:61837148-61837167 | Msa0175720:intron | 25.0% |
| ! | CTACAGAATGATAAAGAATA+GGG | + | chr1_4:61837149-61837168 | Msa0175720:intron | 25.0% |
| !! | TTTTTACTAGAAAAAGGGAA+TGG | - | chr1_4:61837219-61837238 | None:intergenic | 25.0% |
| ! | TACATACATATAAGGGAAAA+GGG | - | chr1_4:61837265-61837284 | None:intergenic | 25.0% |
| ! | TTACATACATATAAGGGAAA+AGG | - | chr1_4:61837266-61837285 | None:intergenic | 25.0% |
| ! | GGTTCTTTACATACATATAA+GGG | - | chr1_4:61837272-61837291 | None:intergenic | 25.0% |
| ! | AGGTTCTTTACATACATATA+AGG | - | chr1_4:61837273-61837292 | None:intergenic | 25.0% |
| !! | TTATGGATACATTCTGTTTT+AGG | + | chr1_4:61837498-61837517 | Msa0175720:intron | 25.0% |
| !! | TATGGATACATTCTGTTTTA+GGG | + | chr1_4:61837499-61837518 | Msa0175720:intron | 25.0% |
| !!! | TTTTTAAAAAATGATGCTGC+AGG | + | chr1_4:61837538-61837557 | Msa0175720:intron | 25.0% |
| !!! | TTTTAAAAAATGATGCTGCA+GGG | + | chr1_4:61837539-61837558 | Msa0175720:intron | 25.0% |
| !! | TTTTATTATTCCATGGCTAT+GGG | - | chr1_4:61837706-61837725 | None:intergenic | 25.0% |
| !! | TCAAGACTTTTATTATTCCA+TGG | - | chr1_4:61837713-61837732 | None:intergenic | 25.0% |
| ! | TACACCAACTTTCTAATTTA+AGG | - | chr1_4:61837770-61837789 | None:intergenic | 25.0% |
| !!! | ATAAAGAGAACTGTTTTAAC+TGG | - | chr1_4:61837831-61837850 | None:intergenic | 25.0% |
| ! | AACAACACTATAAAATCTTG+GGG | + | chr1_4:61838169-61838188 | Msa0175720:CDS | 25.0% |
| ! | AGGAATTATTATTGCCAAAA+AGG | - | chr1_4:61838295-61838314 | None:intergenic | 25.0% |
| ! | TTGTATTTACATCAAATAGG+TGG | + | chr1_4:61838331-61838350 | Msa0175720:intron | 25.0% |
| ! | TGTATTTACATCAAATAGGT+GGG | + | chr1_4:61838332-61838351 | Msa0175720:intron | 25.0% |
| !!! | TCTTGAGCTTTATTATAAAC+GGG | + | chr1_4:61838509-61838528 | Msa0175720:three_prime_UTR | 25.0% |
| ! | AACTATATCGATACTTATCT+GGG | - | chr1_4:61838658-61838677 | None:intergenic | 25.0% |
| ! | TAACTATATCGATACTTATC+TGG | - | chr1_4:61838659-61838678 | None:intergenic | 25.0% |
| ! | CAAGAAGTAAATACAAAAAC+AGG | - | chr1_4:61838773-61838792 | None:intergenic | 25.0% |
| !! | GTACTTTGTTCAATAACTTT+TGG | + | chr1_4:61838792-61838811 | Msa0175720:three_prime_UTR | 25.0% |
| !! | TCAATAACTTTTGGCAATAA+TGG | + | chr1_4:61838801-61838820 | Msa0175720:three_prime_UTR | 25.0% |
| !!! | AAGGTTGATATAATGAAGAT+GGG | + | chr1_4:61838843-61838862 | Msa0175720:three_prime_UTR | 25.0% |
| ! | TTTAACATACAATATGACGA+TGG | - | chr1_4:61838884-61838903 | None:intergenic | 25.0% |
| TAAGAAAAAAACATGAACCG+CGG | - | chr1_4:61835585-61835604 | None:intergenic | 30.0% | |
| TCTTTCCAGAAAATTTGCAA+TGG | + | chr1_4:61835706-61835725 | Msa0175720:CDS | 30.0% | |
| GAAAGAAAGAAATTAGGATG+AGG | - | chr1_4:61835755-61835774 | None:intergenic | 30.0% | |
| ! | TTCCGTTTTCTTGAATTTGA+AGG | + | chr1_4:61835807-61835826 | Msa0175720:intron | 30.0% |
| ATTAAATGTAACCACATGTC+TGG | - | chr1_4:61836039-61836058 | None:intergenic | 30.0% | |
| ! | TATTCTTATTGTATCGACGT+TGG | + | chr1_4:61836537-61836556 | Msa0175720:intron | 30.0% |
| !! | GATTTTAGGAAAGACGAAAA+GGG | - | chr1_4:61836678-61836697 | None:intergenic | 30.0% |
| CTTGTACGATGTTATATATC+TGG | + | chr1_4:61836729-61836748 | Msa0175720:intron | 30.0% | |
| TCATAGTTCACCTTTCTATT+GGG | - | chr1_4:61836802-61836821 | None:intergenic | 30.0% | |
| TTCATAGTTCACCTTTCTAT+TGG | - | chr1_4:61836803-61836822 | None:intergenic | 30.0% | |
| GTAACATTAATATCATGCCA+AGG | - | chr1_4:61837032-61837051 | None:intergenic | 30.0% | |
| TACAAAAAAGCTCCTAGATT+TGG | - | chr1_4:61837092-61837111 | None:intergenic | 30.0% | |
| GCATATTGACACAAAAACTT+AGG | - | chr1_4:61837324-61837343 | None:intergenic | 30.0% | |
| TAGGTTTATATTATTGCGGA+AGG | - | chr1_4:61837398-61837417 | None:intergenic | 30.0% | |
| AAGAGGTAATGAAAACCTTA+GGG | - | chr1_4:61837596-61837615 | None:intergenic | 30.0% | |
| TAAGAGGTAATGAAAACCTT+AGG | - | chr1_4:61837597-61837616 | None:intergenic | 30.0% | |
| ! | CTTTTATTATTCCATGGCTA+TGG | - | chr1_4:61837707-61837726 | None:intergenic | 30.0% |
| ACTGCCTTAAATTAGAAAGT+TGG | + | chr1_4:61837763-61837782 | Msa0175720:intron | 30.0% | |
| CTAAGAAACAAGGAGATAAA+AGG | - | chr1_4:61837946-61837965 | None:intergenic | 30.0% | |
| GAAGAAAATATAGTTTCACC+AGG | + | chr1_4:61838002-61838021 | Msa0175720:CDS | 30.0% | |
| AATATAGTTTCACCAGGAAA+AGG | + | chr1_4:61838008-61838027 | Msa0175720:CDS | 30.0% | |
| TATTGCCAAAAAGGAACATA+AGG | - | chr1_4:61838286-61838305 | None:intergenic | 30.0% | |
| TTGGCAATAATAATTCCTGA+TGG | + | chr1_4:61838297-61838316 | Msa0175720:intron | 30.0% | |
| TGGCAATAATAATTCCTGAT+GGG | + | chr1_4:61838298-61838317 | Msa0175720:intron | 30.0% | |
| ATCCAACTGTTTGAATAACT+AGG | + | chr1_4:61838472-61838491 | Msa0175720:exon | 30.0% | |
| ATCCTAGTTATTCAAACAGT+TGG | - | chr1_4:61838477-61838496 | None:intergenic | 30.0% | |
| !! | GAAGGTTGATATAATGAAGA+TGG | + | chr1_4:61838842-61838861 | Msa0175720:three_prime_UTR | 30.0% |
| AAGAAAAAAACATGAACCGC+GGG | - | chr1_4:61835584-61835603 | None:intergenic | 35.0% | |
| ! | AGCATCCATTGCAAATTTTC+TGG | - | chr1_4:61835714-61835733 | None:intergenic | 35.0% |
| AGAAAATTTGCAATGGATGC+TGG | + | chr1_4:61835713-61835732 | Msa0175720:CDS | 35.0% | |
| !!! | AGCAATAGATTTTTTGGCAG+TGG | - | chr1_4:61835865-61835884 | None:intergenic | 35.0% |
| !!! | GGCATCAGCAATAGATTTTT+TGG | - | chr1_4:61835871-61835890 | None:intergenic | 35.0% |
| ACGAAGAATATGAGGAATGA+TGG | - | chr1_4:61835892-61835911 | None:intergenic | 35.0% | |
| ! | CAAATTGGCGTTAAGTATTG+TGG | - | chr1_4:61835939-61835958 | None:intergenic | 35.0% |
| TAGCTCACTGAAATTGATAC+GGG | - | chr1_4:61836139-61836158 | None:intergenic | 35.0% | |
| CTAGCTCACTGAAATTGATA+CGG | - | chr1_4:61836140-61836159 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAAACTCAGTATCC+TGG | - | chr1_4:61836225-61836244 | None:intergenic | 35.0% |
| GATTATAGCCTATAAAGCAC+CGG | - | chr1_4:61836285-61836304 | None:intergenic | 35.0% | |
| TACTAGTGTGCTATGTCTTA+TGG | + | chr1_4:61836430-61836449 | Msa0175720:intron | 35.0% | |
| TTGGTGTGGTATTTCAGATA+TGG | + | chr1_4:61836556-61836575 | Msa0175720:intron | 35.0% | |
| !! | CGATTTTAGGAAAGACGAAA+AGG | - | chr1_4:61836679-61836698 | None:intergenic | 35.0% |
| TTCAAGTGTACCCAATAGAA+AGG | + | chr1_4:61836789-61836808 | Msa0175720:intron | 35.0% | |
| TTGTTGTCTATGCTTCTTGA+TGG | + | chr1_4:61836931-61836950 | Msa0175720:intron | 35.0% | |
| ! | TTCTTTTACAGTGCTAACCT+TGG | + | chr1_4:61837012-61837031 | Msa0175720:intron | 35.0% |
| ! | AAAGCTCCTAGATTTGGTTA+GGG | - | chr1_4:61837086-61837105 | None:intergenic | 35.0% |
| ! | AAAAGCTCCTAGATTTGGTT+AGG | - | chr1_4:61837087-61837106 | None:intergenic | 35.0% |
| ATGTCCCAATGTGCATATAA+TGG | + | chr1_4:61837124-61837143 | Msa0175720:intron | 35.0% | |
| ! | AGTGCCATTATATGCACATT+GGG | - | chr1_4:61837131-61837150 | None:intergenic | 35.0% |
| ! | TAGTGCCATTATATGCACAT+TGG | - | chr1_4:61837132-61837151 | None:intergenic | 35.0% |
| CAGAATGATAAAGAATAGGG+AGG | + | chr1_4:61837152-61837171 | Msa0175720:intron | 35.0% | |
| ! | AAGGGAAGTATGCCAAATAT+TGG | - | chr1_4:61837247-61837266 | None:intergenic | 35.0% |
| TGTATGTAAAGAACCTGTCA+AGG | + | chr1_4:61837277-61837296 | Msa0175720:intron | 35.0% | |
| ATGTAAAAATAGGCCTTGAC+AGG | - | chr1_4:61837293-61837312 | None:intergenic | 35.0% | |
| !! | GGCTTGCTGAATGTAAAAAT+AGG | - | chr1_4:61837303-61837322 | None:intergenic | 35.0% |
| AATGTATACGAGTGTGGAAT+AGG | - | chr1_4:61837349-61837368 | None:intergenic | 35.0% | |
| ! | TTGTACTACTCTTTTGAGCA+TGG | + | chr1_4:61837440-61837459 | Msa0175720:intron | 35.0% |
| GAGACAAAGTGATTGATAAG+AGG | - | chr1_4:61837613-61837632 | None:intergenic | 35.0% | |
| AATGAAGATCAACGTGAAGA+AGG | - | chr1_4:61837635-61837654 | None:intergenic | 35.0% | |
| ACACTATAAAATCTTGGGGA+AGG | + | chr1_4:61838173-61838192 | Msa0175720:CDS | 35.0% | |
| TTAATACATACCAGTCCTCA+TGG | - | chr1_4:61838254-61838273 | None:intergenic | 35.0% | |
| CAAAAAGGAACATAAGGCTA+AGG | - | chr1_4:61838280-61838299 | None:intergenic | 35.0% | |
| !!! | CTTAGCCTTATGTTCCTTTT+TGG | + | chr1_4:61838278-61838297 | Msa0175720:intron | 35.0% |
| ACGGTTTCTCGATTAGAAAT+TGG | - | chr1_4:61838366-61838385 | None:intergenic | 35.0% | |
| TAGCAACTCATGTGTTTATG+AGG | + | chr1_4:61838439-61838458 | Msa0175720:CDS | 35.0% | |
| ACTCATGTGTTTATGAGGTT+CGG | + | chr1_4:61838444-61838463 | Msa0175720:CDS | 35.0% | |
| TGTACATGAGACTAGATACT+TGG | + | chr1_4:61838534-61838553 | Msa0175720:three_prime_UTR | 35.0% | |
| ATGAATGCTGAACTTCTATG+TGG | + | chr1_4:61838603-61838622 | Msa0175720:three_prime_UTR | 35.0% | |
| ! | TCTATGTGGAACTTAACTTG+TGG | + | chr1_4:61838617-61838636 | Msa0175720:three_prime_UTR | 35.0% |
| !! | ACTTTTGGCAATAATGGAGA+TGG | + | chr1_4:61838807-61838826 | Msa0175720:three_prime_UTR | 35.0% |
| !! | CTTTTGGCAATAATGGAGAT+GGG | + | chr1_4:61838808-61838827 | Msa0175720:three_prime_UTR | 35.0% |
| AATGAAGATGGGAGTGAAAA+TGG | + | chr1_4:61838854-61838873 | Msa0175720:three_prime_UTR | 35.0% | |
| AAAGAAGAGGAATGTGTTGG+TGG | - | chr1_4:61835556-61835575 | None:intergenic | 40.0% | |
| GAGAAAGAAGAGGAATGTGT+TGG | - | chr1_4:61835559-61835578 | None:intergenic | 40.0% | |
| GAAAGACAGAGAGAAGTTGA+GGG | - | chr1_4:61835692-61835711 | None:intergenic | 40.0% | |
| ATTTGCAATGGATGCTGGTA+AGG | + | chr1_4:61835718-61835737 | Msa0175720:intron | 40.0% | |
| GCTTACAGACGAAGAATATG+AGG | - | chr1_4:61835900-61835919 | None:intergenic | 40.0% | |
| GTGTCATCACTCAATGTCTT+AGG | + | chr1_4:61836104-61836123 | Msa0175720:intron | 40.0% | |
| AGCTCACTGAAATTGATACG+GGG | - | chr1_4:61836138-61836157 | None:intergenic | 40.0% | |
| TACTTGAGGGAGTCGTTTAA+TGG | - | chr1_4:61836164-61836183 | None:intergenic | 40.0% | |
| CAATCCCATTGTCTACTTGA+GGG | - | chr1_4:61836177-61836196 | None:intergenic | 40.0% | |
| TGTCATGTCCTTGTCTTTAC+CGG | + | chr1_4:61836263-61836282 | Msa0175720:intron | 40.0% | |
| !! | ATAAAGCACCGGTAAAGACA+AGG | - | chr1_4:61836274-61836293 | None:intergenic | 40.0% |
| TGTCTTTACCGGTGCTTTAT+AGG | + | chr1_4:61836274-61836293 | Msa0175720:intron | 40.0% | |
| GTGTGCTATGTCTTATGGTT+TGG | + | chr1_4:61836435-61836454 | Msa0175720:intron | 40.0% | |
| ! | CTTATGGTTTGGATCATGCT+AGG | + | chr1_4:61836446-61836465 | Msa0175720:intron | 40.0% |
| ! | TTATTGTATCGACGTTGGTG+TGG | + | chr1_4:61836542-61836561 | Msa0175720:intron | 40.0% |
| !! | GCTTCTTGATGGTGAAATCA+CGG | + | chr1_4:61836942-61836961 | Msa0175720:intron | 40.0% |
| GGGGCTATAAGTCTTTATCA+TGG | - | chr1_4:61837066-61837085 | None:intergenic | 40.0% | |
| TATAGCCCCTAACCAAATCT+AGG | + | chr1_4:61837077-61837096 | Msa0175720:intron | 40.0% | |
| ! | AAGCTCCTAGATTTGGTTAG+GGG | - | chr1_4:61837085-61837104 | None:intergenic | 40.0% |
| CATTGGGACATCAAATTTGG+TGG | - | chr1_4:61837115-61837134 | None:intergenic | 40.0% | |
| GCACATTGGGACATCAAATT+TGG | - | chr1_4:61837118-61837137 | None:intergenic | 40.0% | |
| GGATCAAATGTATACGAGTG+TGG | - | chr1_4:61837355-61837374 | None:intergenic | 40.0% | |
| TCCCTATACCAGCATATTTG+TGG | + | chr1_4:61837372-61837391 | Msa0175720:intron | 40.0% | |
| GCCACAAATATGCTGGTATA+GGG | - | chr1_4:61837376-61837395 | None:intergenic | 40.0% | |
| AGCTAACTGCTATCGTCAAT+AGG | - | chr1_4:61837417-61837436 | None:intergenic | 40.0% | |
| CTAAATAGAACCCATAGCCA+TGG | + | chr1_4:61837693-61837712 | Msa0175720:intron | 40.0% | |
| CGCTAAACAGCTAAGAAACA+AGG | - | chr1_4:61837956-61837975 | None:intergenic | 40.0% | |
| GTTTAGCGAGTCAAAGATTG+TGG | + | chr1_4:61837968-61837987 | Msa0175720:CDS | 40.0% | |
| ! | TTACTAACCTCTCCTTTTCC+TGG | - | chr1_4:61838023-61838042 | None:intergenic | 40.0% |
| CTTGGGGAAGGATATAGATA+TGG | + | chr1_4:61838185-61838204 | Msa0175720:CDS | 40.0% | |
| ! | GCTAATCAAGTTGTCTGTTG+AGG | + | chr1_4:61838212-61838231 | Msa0175720:CDS | 40.0% |
| ! | AATCAAGTTGTCTGTTGAGG+AGG | + | chr1_4:61838215-61838234 | Msa0175720:CDS | 40.0% |
| ! | ATCAAGTTGTCTGTTGAGGA+GGG | + | chr1_4:61838216-61838235 | Msa0175720:CDS | 40.0% |
| ACAAAACTTAGTCACCCATC+AGG | - | chr1_4:61838315-61838334 | None:intergenic | 40.0% | |
| CTCATGTGTTTATGAGGTTC+GGG | + | chr1_4:61838445-61838464 | Msa0175720:CDS | 40.0% | |
| !! | AGATGGGAGTGAAGTTTTGA+AGG | + | chr1_4:61838824-61838843 | Msa0175720:three_prime_UTR | 40.0% |
| GGAAAGACAGAGAGAAGTTG+AGG | - | chr1_4:61835693-61835712 | None:intergenic | 45.0% | |
| GCTCACTGAAATTGATACGG+GGG | - | chr1_4:61836137-61836156 | None:intergenic | 45.0% | |
| GACTCCCTCAAGTAGACAAT+GGG | + | chr1_4:61836170-61836189 | Msa0175720:intron | 45.0% | |
| CCAATCCCATTGTCTACTTG+AGG | - | chr1_4:61836178-61836197 | None:intergenic | 45.0% | |
| CCTCAAGTAGACAATGGGAT+TGG | + | chr1_4:61836175-61836194 | Msa0175720:intron | 45.0% | |
| AGACAATGGGATTGGACCTT+CGG | + | chr1_4:61836183-61836202 | Msa0175720:intron | 45.0% | |
| CCAAAGACTGACTATTCCGA+AGG | - | chr1_4:61836202-61836221 | None:intergenic | 45.0% | |
| CCTTCGGAATAGTCAGTCTT+TGG | + | chr1_4:61836199-61836218 | Msa0175720:intron | 45.0% | |
| CAGATATGGATCATGTGCCA+CGG | + | chr1_4:61836570-61836589 | Msa0175720:intron | 45.0% | |
| !! | ATCCTCAAAGGAAGCATCTG+GGG | - | chr1_4:61836617-61836636 | None:intergenic | 45.0% |
| !! | GATCCTCAAAGGAAGCATCT+GGG | - | chr1_4:61836618-61836637 | None:intergenic | 45.0% |
| ATACCCTTGTGCACGCATAA+GGG | - | chr1_4:61836641-61836660 | None:intergenic | 45.0% | |
| TTAGGAAAGACGAAAAGGGC+AGG | - | chr1_4:61836674-61836693 | None:intergenic | 45.0% | |
| GGCCACAAATATGCTGGTAT+AGG | - | chr1_4:61837377-61837396 | None:intergenic | 45.0% | |
| AGCATTCTACTCTCTCCCTA+AGG | + | chr1_4:61837578-61837597 | Msa0175720:CDS | 45.0% | |
| AGTTTCACCAGGAAAAGGAG+AGG | + | chr1_4:61838013-61838032 | Msa0175720:CDS | 45.0% | |
| GTGCTTGCTTGATCTCTTAG+TGG | + | chr1_4:61838096-61838115 | Msa0175720:intron | 45.0% | |
| GGGTAAAGTTATTCGCCATG+AGG | + | chr1_4:61838236-61838255 | Msa0175720:CDS | 45.0% | |
| AAGTTATTCGCCATGAGGAC+TGG | + | chr1_4:61838241-61838260 | Msa0175720:CDS | 45.0% | |
| TGCGAGTCATTTCTGCAACT+CGG | - | chr1_4:61838407-61838426 | None:intergenic | 45.0% | |
| AGTTGCAGAAATGACTCGCA+GGG | + | chr1_4:61838407-61838426 | Msa0175720:CDS | 45.0% | |
| TGTGTTTATGAGGTTCGGGA+AGG | + | chr1_4:61838449-61838468 | Msa0175720:CDS | 45.0% | |
| TCCTCTTCTTTCTCTTCCCG+CGG | + | chr1_4:61835565-61835584 | Msa0175720:five_prime_UTR | 50.0% | |
| TGCAATGGATGCTGGTAAGG+AGG | + | chr1_4:61835721-61835740 | Msa0175720:intron | 50.0% | |
| GCAATGGATGCTGGTAAGGA+GGG | + | chr1_4:61835722-61835741 | Msa0175720:intron | 50.0% | |
| CGACTCCCTCAAGTAGACAA+TGG | + | chr1_4:61836169-61836188 | Msa0175720:intron | 50.0% | |
| GGAATAGTCAGTCTTTGGCC+AGG | + | chr1_4:61836204-61836223 | Msa0175720:intron | 50.0% | |
| GATTTCAAAATCGCGAGCCG+TGG | - | chr1_4:61836590-61836609 | None:intergenic | 50.0% | |
| !! | GGATCCTCAAAGGAAGCATC+TGG | - | chr1_4:61836619-61836638 | None:intergenic | 50.0% |
| ACGCATAAGGGGATCCTCAA+AGG | - | chr1_4:61836629-61836648 | None:intergenic | 50.0% | |
| ATCCCCTTATGCGTGCACAA+GGG | + | chr1_4:61836635-61836654 | Msa0175720:CDS | 50.0% | |
| TACCCTTGTGCACGCATAAG+GGG | - | chr1_4:61836640-61836659 | None:intergenic | 50.0% | |
| CATACCCTTGTGCACGCATA+AGG | - | chr1_4:61836642-61836661 | None:intergenic | 50.0% | |
| ACCGTAAAGCTGCCATTGCT+TGG | + | chr1_4:61838381-61838400 | Msa0175720:CDS | 50.0% | |
| GCCAAGCAATGGCAGCTTTA+CGG | - | chr1_4:61838385-61838404 | None:intergenic | 50.0% | |
| GAGTTGCAGAAATGACTCGC+AGG | + | chr1_4:61838406-61838425 | Msa0175720:CDS | 50.0% | |
| GTTGCAGAAATGACTCGCAG+GGG | + | chr1_4:61838408-61838427 | Msa0175720:CDS | 50.0% | |
| GACTAGATACTTGGCGTCGT+TGG | + | chr1_4:61838543-61838562 | Msa0175720:three_prime_UTR | 50.0% | |
| ACCGCGGGAAGAGAAAGAAG+AGG | - | chr1_4:61835569-61835588 | None:intergenic | 55.0% | |
| ! | CTGGCTCGCTTCAGAAGTGT+TGG | - | chr1_4:61836020-61836039 | None:intergenic | 55.0% |
| ! | TCTGAAGCGAGCCAGACATG+TGG | + | chr1_4:61836025-61836044 | Msa0175720:intron | 55.0% |
| TGCCCCAGATGCTTCCTTTG+AGG | + | chr1_4:61836612-61836631 | Msa0175720:CDS | 55.0% | |
| GATCCCCTTATGCGTGCACA+AGG | + | chr1_4:61836634-61836653 | Msa0175720:CDS | 55.0% | |
| GCGGAAGGCCACAAATATGC+TGG | - | chr1_4:61837383-61837402 | None:intergenic | 55.0% | |
| TCTGCAACTCGGCCAAGCAA+TGG | - | chr1_4:61838396-61838415 | None:intergenic | 55.0% | |
| !! | GGAATGTGTTGGTGGCGCCT+TGG | - | chr1_4:61835548-61835567 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 61835540 | 61838940 | 61835540 | ID=Msa0175720;Name=Msa0175720 |
| chr1_4 | mRNA | 61835540 | 61838940 | 61835540 | ID=Msa0175720-mRNA-1;Parent=Msa0175720;Name=Msa0175720-mRNA-1;_AED=0.37;_eAED=0.37;_QI=116|1|1|1|1|1|7|455|200 |
| chr1_4 | exon | 61835540 | 61835734 | 61835540 | ID=Msa0175720-mRNA-1:exon:19794;Parent=Msa0175720-mRNA-1 |
| chr1_4 | exon | 61835829 | 61835913 | 61835829 | ID=Msa0175720-mRNA-1:exon:19795;Parent=Msa0175720-mRNA-1 |
| chr1_4 | exon | 61836573 | 61836656 | 61836573 | ID=Msa0175720-mRNA-1:exon:19796;Parent=Msa0175720-mRNA-1 |
| chr1_4 | exon | 61837560 | 61837599 | 61837560 | ID=Msa0175720-mRNA-1:exon:19797;Parent=Msa0175720-mRNA-1 |
| chr1_4 | exon | 61837966 | 61838034 | 61837966 | ID=Msa0175720-mRNA-1:exon:19798;Parent=Msa0175720-mRNA-1 |
| chr1_4 | exon | 61838153 | 61838262 | 61838153 | ID=Msa0175720-mRNA-1:exon:19799;Parent=Msa0175720-mRNA-1 |
| chr1_4 | exon | 61838350 | 61838940 | 61838350 | ID=Msa0175720-mRNA-1:exon:19800;Parent=Msa0175720-mRNA-1 |
| chr1_4 | five_prime_UTR | 61835540 | 61835655 | 61835540 | ID=Msa0175720-mRNA-1:five_prime_utr;Parent=Msa0175720-mRNA-1 |
| chr1_4 | CDS | 61835656 | 61835734 | 61835656 | ID=Msa0175720-mRNA-1:cds;Parent=Msa0175720-mRNA-1 |
| chr1_4 | CDS | 61835829 | 61835913 | 61835829 | ID=Msa0175720-mRNA-1:cds;Parent=Msa0175720-mRNA-1 |
| chr1_4 | CDS | 61836573 | 61836656 | 61836573 | ID=Msa0175720-mRNA-1:cds;Parent=Msa0175720-mRNA-1 |
| chr1_4 | CDS | 61837560 | 61837599 | 61837560 | ID=Msa0175720-mRNA-1:cds;Parent=Msa0175720-mRNA-1 |
| chr1_4 | CDS | 61837966 | 61838034 | 61837966 | ID=Msa0175720-mRNA-1:cds;Parent=Msa0175720-mRNA-1 |
| chr1_4 | CDS | 61838153 | 61838262 | 61838153 | ID=Msa0175720-mRNA-1:cds;Parent=Msa0175720-mRNA-1 |
| chr1_4 | CDS | 61838350 | 61838485 | 61838350 | ID=Msa0175720-mRNA-1:cds;Parent=Msa0175720-mRNA-1 |
| chr1_4 | three_prime_UTR | 61838486 | 61838940 | 61838486 | ID=Msa0175720-mRNA-1:three_prime_utr;Parent=Msa0175720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
