AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0246300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0246300 MtrunA17_Chr2g0300861 91.375 371 32 0 1 371 1 371 0.0 682
Msa0246300 MtrunA17_Chr2g0300851 84.789 355 51 1 17 371 1 352 0.0 624
Msa0246300 MtrunA17_Chr2g0300841 83.003 353 59 1 20 371 8 360 0.0 602
Msa0246300 MtrunA17_Chr8g0370791 33.043 345 217 10 29 366 27 364 2.16e-52 178
Msa0246300 MtrunA17_Chr8g0370761 32.410 361 214 10 22 366 18 364 1.21e-48 168
Msa0246300 MtrunA17_Chr8g0370771 32.636 239 140 5 136 366 4 229 3.47e-37 134
Msa0246300 MtrunA17_Chr4g0025341 31.200 250 159 4 124 364 142 387 2.40e-33 127
Msa0246300 MtrunA17_Chr2g0329531 27.208 283 194 6 96 367 124 405 5.71e-31 121
Msa0246300 MtrunA17_Chr7g0256601 30.120 249 164 5 126 365 167 414 3.13e-30 120
Msa0246300 MtrunA17_Chr2g0322241 31.600 250 158 8 124 364 146 391 8.49e-29 115
Msa0246300 MtrunA17_Chr7g0256581 33.202 253 149 8 124 364 121 365 7.46e-28 112
Msa0246300 MtrunA17_Chr7g0256591 28.571 259 155 6 126 365 136 383 7.82e-28 112
Msa0246300 MtrunA17_Chr7g0256571 28.481 316 194 10 77 364 54 365 9.60e-27 109
Msa0246300 MtrunA17_Chr4g0062001 36.478 159 97 3 124 279 110 267 4.82e-25 103
Msa0246300 MtrunA17_Chr8g0376581 35.220 159 99 3 124 279 108 265 2.89e-23 99.0
Msa0246300 MtrunA17_Chr7g0256561 35.849 159 98 3 124 279 125 282 3.23e-23 99.0
Msa0246300 MtrunA17_Chr4g0062031 35.542 166 100 4 124 283 109 273 6.63e-22 95.1
Msa0246300 MtrunA17_Chr8g0370801 39.623 106 59 1 135 235 2 107 2.33e-21 88.2
Msa0246300 MtrunA17_Chr2g0307721 36.478 159 94 5 126 279 120 276 2.57e-21 95.9
Msa0246300 MtrunA17_Chr2g0307721 35.669 157 94 5 128 279 574 728 3.49e-17 83.2
Msa0246300 MtrunA17_Chr4g0062021 34.395 157 97 4 128 279 126 281 5.38e-21 92.8
Msa0246300 MtrunA17_Chr5g0443561 32.178 202 125 4 89 279 73 273 8.51e-21 92.0
Msa0246300 MtrunA17_Chr4g0020271 36.585 123 76 2 158 279 1 122 1.09e-20 89.0
Msa0246300 MtrunA17_Chr4g0061871 35.714 84 53 1 196 279 31 113 7.26e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0246300 AT3G51420.1 31.476 359 224 11 22 368 13 361 6.42e-49 169
Msa0246300 AT3G51430.2 29.581 382 224 11 8 368 2 359 2.20e-47 165
Msa0246300 AT3G51430.1 29.688 384 223 12 8 368 2 361 4.07e-47 164
Msa0246300 AT3G51440.1 32.105 380 219 12 8 368 2 361 6.67e-47 164
Msa0246300 AT3G51450.1 30.081 369 224 12 20 368 7 361 1.79e-42 152
Msa0246300 AT3G57020.2 28.977 352 206 14 43 358 2 345 2.16e-33 127
Msa0246300 AT3G57020.1 31.907 257 151 9 118 358 111 359 1.46e-31 123
Msa0246300 AT1G08470.1 27.348 362 206 12 46 364 38 385 7.12e-31 121
Msa0246300 AT3G57010.1 32.245 245 153 9 124 358 119 360 1.07e-30 120
Msa0246300 AT3G59530.3 25.823 395 239 13 15 370 20 399 1.35e-30 120
Msa0246300 AT3G59530.2 25.823 395 239 13 15 370 20 399 1.35e-30 120
Msa0246300 AT3G59530.1 25.823 395 239 13 15 370 20 399 1.35e-30 120
Msa0246300 AT5G22020.3 30.233 258 151 5 124 364 146 391 1.57e-30 120
Msa0246300 AT5G22020.1 30.233 258 151 5 124 364 146 391 1.57e-30 120
Msa0246300 AT5G22020.2 30.233 258 151 5 124 364 146 391 1.57e-30 120
Msa0246300 AT3G57030.1 31.474 251 158 5 124 364 124 370 2.10e-30 120
Msa0246300 AT2G41300.1 32.400 250 158 8 118 358 136 383 2.17e-29 117
Msa0246300 AT2G41290.1 30.534 262 165 8 118 364 113 372 1.54e-25 106
Msa0246300 AT1G74010.1 26.087 322 174 11 77 368 38 325 8.26e-19 86.7
Msa0246300 AT1G74000.1 26.744 258 141 8 123 368 108 329 1.06e-17 83.6
Msa0246300 AT1G74020.1 26.667 255 143 8 124 368 107 327 8.69e-17 80.9

Find 94 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAATATTATCAGAAAATT+TGG 0.143128 2_2:+27438597 Msa0246300:CDS
GAATGGTTAGAAATGGAAAT+TGG 0.206093 2_2:+27433228 Msa0246300:CDS
TTGCTCCTGATGGCTCATTT+TGG 0.218438 2_2:+27437969 Msa0246300:CDS
TGTTCAGATCTTACTGAATA+AGG 0.252070 2_2:+27438741 Msa0246300:three_prime_UTR
TGGTTTACACGATTGGTATT+TGG 0.262285 2_2:+27436497 Msa0246300:CDS
TTCTAGCAAAACTGGATCTA+TGG 0.267221 2_2:-27432953 None:intergenic
GTGGTGTTGGTTTGTATGAT+TGG 0.290069 2_2:-27432730 None:intergenic
TGCTGCAGTTAACTTCTAAA+AGG 0.294138 2_2:+27438457 Msa0246300:intron
GAAATGGAAATTGGGAGAAT+TGG 0.304056 2_2:+27433237 Msa0246300:CDS
GAAAGGAGGATTGGTTATAT+TGG 0.304443 2_2:-27432842 None:intergenic
AGTGTTGCTAGTAACAAATT+TGG 0.314925 2_2:+27436477 Msa0246300:CDS
TCATCCACACAAACATCTTC+TGG 0.317516 2_2:-27433161 None:intergenic
ACACTATATGCAATATATAA+AGG 0.343061 2_2:+27432790 Msa0246300:five_prime_UTR
GTTCAGATCTTACTGAATAA+GGG 0.359359 2_2:+27438742 Msa0246300:three_prime_UTR
GGTGGTATTTCTAGCAAAAC+TGG 0.361365 2_2:-27432961 None:intergenic
AGTCTTAATTCTGACTTTGT+TGG 0.375736 2_2:+27438690 Msa0246300:CDS
GAAGTGCTTGGATACTTTAG+AGG 0.389941 2_2:-27438496 Msa0246310:three_prime_UTR
ATTAAAAGAATGGTTAGAAA+TGG 0.392540 2_2:+27433221 Msa0246300:CDS
AATGGTTAGAAATGGAAATT+GGG 0.411141 2_2:+27433229 Msa0246300:CDS
TGTGTGAGGCATTGGCTAAA+AGG 0.415735 2_2:+27437881 Msa0246300:CDS
TTGCTCAAGGTTACAGAAGA+AGG 0.424204 2_2:+27433580 Msa0246300:CDS
AGAAAATTTGGTGATAATGA+AGG 0.432823 2_2:+27438609 Msa0246300:CDS
ACAAATTTGGTTTACACGAT+TGG 0.435403 2_2:+27436490 Msa0246300:CDS
GATTTAGGTGTGTGAGGCAT+TGG 0.440927 2_2:+27437873 Msa0246300:intron
GCAGTTAACTTCTAAAAGGC+TGG 0.443325 2_2:+27438461 Msa0246300:intron
TTGATCAGATTAAATAGCCT+TGG 0.444628 2_2:-27438531 Msa0246310:three_prime_UTR
AGATGGTTGGATTAAAAGAA+TGG 0.447747 2_2:+27433211 Msa0246300:CDS
GTTATCCTTTCACAAGTGAA+TGG 0.449739 2_2:+27433610 Msa0246300:CDS
AACTTCAGCTGTGGAGTTCG+AGG 0.458627 2_2:+27438650 Msa0246300:CDS
CACAACATAATCTTCATCCT+TGG 0.459374 2_2:-27436628 Msa0246310:three_prime_UTR
ACCAGGAGTGAAAGGAGGAT+TGG 0.468208 2_2:-27432851 None:intergenic
ACCAATCCTCCTTTCACTCC+TGG 0.472704 2_2:+27432850 Msa0246300:CDS
CAGTTAACTTCTAAAAGGCT+GGG 0.484127 2_2:+27438462 Msa0246300:intron
TTGTGTTGGTCTGGTGGTGT+TGG 0.489799 2_2:-27432743 None:intergenic
TGTCACACTCACCTCAACCT+TGG 0.497810 2_2:+27432882 Msa0246300:CDS
TAACAGAATGTGATTAAACT+TGG 0.498645 2_2:+27433119 Msa0246300:intron
GGAGCAAGATTGATATTGTC+AGG 0.502429 2_2:-27437953 Msa0246310:three_prime_UTR
GCGATCCAAAATGAGCCATC+AGG 0.504819 2_2:-27437974 Msa0246310:three_prime_UTR
GATAATTTGACATTTGCAAA+TGG 0.505703 2_2:+27436594 Msa0246300:CDS
ATGCTAGAGGCAAGACCTCA+TGG 0.506453 2_2:+27436522 Msa0246300:CDS
ATAACCCACTTGTGTTGGTC+TGG 0.507277 2_2:-27432752 None:intergenic
TAAGACTTCCTAGGTAAAGA+TGG 0.512125 2_2:-27438674 Msa0246310:three_prime_UTR
TCTAGCAAAACTGGATCTAT+GGG 0.513366 2_2:-27432952 None:intergenic
TCAGCTATGGTGGTAAATGT+TGG 0.514317 2_2:+27438567 Msa0246300:CDS
TTGATATTGTCAGGTCCACC+AGG 0.514609 2_2:-27437944 Msa0246310:three_prime_UTR
AGTCAGAATTAAGACTTCCT+AGG 0.516302 2_2:-27438683 Msa0246310:three_prime_UTR
AATATCAATCTTGCTCCTGA+TGG 0.526078 2_2:+27437959 Msa0246300:CDS
GAAAATTTGGTGATAATGAA+GGG 0.527905 2_2:+27438610 Msa0246300:CDS
AAATGAAGCAAAGAAGTGCT+TGG 0.534736 2_2:-27438508 Msa0246310:three_prime_UTR
ATGTTGTGGTGTGCGAAACT+TGG 0.535986 2_2:+27436643 Msa0246300:CDS
CAAAATTTACCAGGAGTGAA+AGG 0.536316 2_2:-27432859 None:intergenic
ACTTCTTTGCTTCATTTCCA+AGG 0.538170 2_2:+27438514 Msa0246300:CDS
GAAATTGAAAATACAGATGG+TGG 0.543105 2_2:-27432979 None:intergenic
TTCAGATCTTACTGAATAAG+GGG 0.546322 2_2:+27438743 Msa0246300:three_prime_UTR
ATCTTCATTGAAAACCTCCC+TGG 0.556484 2_2:+27437926 Msa0246300:CDS
AATGTGATTAAACTTGGAGA+AGG 0.561564 2_2:+27433125 Msa0246300:CDS
TAGTGCAACAAAATCAGCTA+TGG 0.562467 2_2:+27438554 Msa0246300:CDS
AGCTGCTAGAACCAAGGTTG+AGG 0.564727 2_2:-27432893 None:intergenic
GAGAACCATTCACTTGTGAA+AGG 0.565917 2_2:-27433615 None:intergenic
ACCCACTTGTGTTGGTCTGG+TGG 0.565980 2_2:-27432749 None:intergenic
GTGGTAAATGTTGGAACTGA+TGG 0.567394 2_2:+27438576 Msa0246300:CDS
CATTGTCTGTGATACTACCT+TGG 0.569110 2_2:+27433316 Msa0246300:CDS
GGAATCACTACATCTAAAGA+TGG 0.570283 2_2:+27433287 Msa0246300:CDS
AACTAAAGCTGCTAGAACCA+AGG 0.570761 2_2:-27432899 None:intergenic
TAACCAGATTTAGGTGTGTG+AGG 0.578868 2_2:+27437867 Msa0246300:intron
CACCACCAGACCAACACAAG+TGG 0.581924 2_2:+27432747 Msa0246300:five_prime_UTR
TGCAACAAAATCAGCTATGG+TGG 0.585649 2_2:+27438557 Msa0246300:CDS
AACACACAGCTTCTAAAGCA+TGG 0.587286 2_2:+27432816 Msa0246300:exon
ATACAGCTACAAGAGATGGT+TGG 0.588555 2_2:+27433198 Msa0246300:CDS
GATGTAATAGAAGCATCAGA+TGG 0.591553 2_2:+27436441 Msa0246300:CDS
ATTTGGTGATAATGAAGGGA+AGG 0.598760 2_2:+27438614 Msa0246300:CDS
TTGTATACAGCTACAAGAGA+TGG 0.599124 2_2:+27433194 Msa0246300:CDS
TACTTTAAAAGTTGTCCATG+AGG 0.601518 2_2:-27436537 Msa0246310:three_prime_UTR
AGTTAACTTCTAAAAGGCTG+GGG 0.604881 2_2:+27438463 Msa0246300:intron
TTGGTATTTGGATATGCTAG+AGG 0.604893 2_2:+27436509 Msa0246300:CDS
GATGTTTGTGTGGATGAAGA+TGG 0.612087 2_2:+27433167 Msa0246300:CDS
GATGAATAACCCACTTGTGT+TGG 0.612869 2_2:-27432757 None:intergenic
GAAGAAATTGAAAATACAGA+TGG 0.625075 2_2:-27432982 None:intergenic
TGGCTAAAAGGAATTAACAA+AGG 0.629911 2_2:+27437893 Msa0246300:CDS
AAATGGTGTTGCACTGTCCA+AGG 0.631186 2_2:+27436611 Msa0246300:CDS
TTCGAGGACCATCTTTACCT+AGG 0.636330 2_2:+27438666 Msa0246300:CDS
AGTGTGACACAAAATTTACC+AGG 0.638833 2_2:-27432868 None:intergenic
ATCACTACATCTAAAGATGG+TGG 0.642182 2_2:+27433290 Msa0246300:CDS
TTCATTGAAAACCTCCCTGG+TGG 0.642285 2_2:+27437929 Msa0246300:CDS
ATAACTGTCTCATTTAACGT+GGG 0.647464 2_2:-27436564 Msa0246310:three_prime_UTR
ACCACCAGACCAACACAAGT+GGG 0.647520 2_2:+27432748 Msa0246300:five_prime_UTR
AATTTACCAGGAGTGAAAGG+AGG 0.657241 2_2:-27432856 None:intergenic
AATAACTGTCTCATTTAACG+TGG 0.678986 2_2:-27436565 Msa0246310:three_prime_UTR
GCAACCAGAAGATGTTTGTG+TGG 0.680006 2_2:+27433157 Msa0246300:CDS
TCAGATCTTACTGAATAAGG+GGG 0.681767 2_2:+27438744 Msa0246300:three_prime_UTR
TATTGTCAGGTCCACCAGGG+AGG 0.702604 2_2:-27437940 Msa0246310:three_prime_UTR
TGATATTGTCAGGTCCACCA+GGG 0.707648 2_2:-27437943 Msa0246310:three_prime_UTR
CAACACTATGCAATTGACAG+TGG 0.707845 2_2:-27438720 Msa0246310:three_prime_UTR
CAAGGATGAAGATTATGTTG+TGG 0.724530 2_2:+27436629 Msa0246300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATTCATGTAAATT+TGG + chr2_2:27433406-27433425 Msa0246300:intron 10.0%
!!! ATTTTAAAGTAAAACAAAAT+TGG + chr2_2:27434138-27434157 Msa0246300:intron 10.0%
!!! TTTTTTTACAAATAAAACTA+AGG - chr2_2:27434479-27434498 None:intergenic 10.0%
!! ATAATTCACATTATAAAATT+AGG - chr2_2:27436132-27436151 None:intergenic 10.0%
!! GTTCATAAAATTAAAATAAA+AGG + chr2_2:27436784-27436803 Msa0246300:intron 10.0%
!!! CAAAAAGATATTTTTTTTTT+AGG - chr2_2:27437012-27437031 Msa0246310:intron 10.0%
!!! AAAAAAAAAATATCTTTTTG+TGG + chr2_2:27437012-27437031 Msa0246300:intron 10.0%
!!! TTTATAACTAGTATTTTATT+TGG + chr2_2:27437237-27437256 Msa0246300:intron 10.0%
!! TTATAAAGATTTATAAAGTT+TGG + chr2_2:27437723-27437742 Msa0246300:intron 10.0%
!! TAAATAAATTTACTAAAGTT+AGG + chr2_2:27438082-27438101 Msa0246300:intron 10.0%
!! GTTACTTAAATTTAAAAAAA+TGG + chr2_2:27438119-27438138 Msa0246300:intron 10.0%
!! ATAAATAAATAAAAAAGCAA+AGG + chr2_2:27438389-27438408 Msa0246300:intron 10.0%
!!! GAATTTTCTTAAGAATATTT+AGG + chr2_2:27433490-27433509 Msa0246300:intron 15.0%
!!! TTAGAAAAAATGGATTTTTA+TGG - chr2_2:27434692-27434711 None:intergenic 15.0%
!!! AACTCATTTTTTAGAAAAAA+TGG - chr2_2:27434702-27434721 None:intergenic 15.0%
!!! GAAAAAAGTGATTTTTTTAA+AGG + chr2_2:27434867-27434886 Msa0246300:intron 15.0%
!!! AGGAAAAAATAGATTTTTTT+TGG + chr2_2:27434887-27434906 Msa0246300:intron 15.0%
!! AATTAGCATCAAATATTATA+GGG - chr2_2:27434934-27434953 None:intergenic 15.0%
!! TAATTAGCATCAAATATTAT+AGG - chr2_2:27434935-27434954 None:intergenic 15.0%
!! TTTATAAAAAAACACCATAA+TGG + chr2_2:27435084-27435103 Msa0246300:intron 15.0%
!!! TTTCTATATTGATTTTTTGA+GGG - chr2_2:27435707-27435726 None:intergenic 15.0%
!!! TTTTCTATATTGATTTTTTG+AGG - chr2_2:27435708-27435727 None:intergenic 15.0%
!! TTAAAATATCTTTAATCTTC+TGG - chr2_2:27435932-27435951 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - chr2_2:27436173-27436192 None:intergenic 15.0%
!! AAAAAAAACTTAAGTTCAAT+AGG - chr2_2:27436726-27436745 Msa0246310:intron 15.0%
!!! AAAACAATGTTTTTTAGAAT+CGG - chr2_2:27437517-27437536 Msa0246310:intron 15.0%
!!! TATATGAACTTTGTTTTTAT+TGG + chr2_2:27438017-27438036 Msa0246300:intron 15.0%
!!! ATATGAACTTTGTTTTTATT+GGG + chr2_2:27438018-27438037 Msa0246300:intron 15.0%
!! ACACTATATGCAATATATAA+AGG + chr2_2:27432790-27432809 Msa0246300:five_prime_UTR 20.0%
!! ATTAAAAGAATGGTTAGAAA+TGG + chr2_2:27433221-27433240 Msa0246300:CDS 20.0%
!! CATGAATTATATATTTACCT+TGG - chr2_2:27433400-27433419 None:intergenic 20.0%
!!! AACACATATTTATATTTTGC+AGG + chr2_2:27433555-27433574 Msa0246300:intron 20.0%
!!! ACACATATTTATATTTTGCA+GGG + chr2_2:27433556-27433575 Msa0246300:intron 20.0%
!! TCTACTATTATAGAAAAAAG+AGG - chr2_2:27434060-27434079 None:intergenic 20.0%
!! TGAGATTAAATAGAGAAAAT+AGG + chr2_2:27434180-27434199 Msa0246300:intron 20.0%
!!! TAAAAGGAGATATATCTTTT+TGG + chr2_2:27434303-27434322 Msa0246300:intron 20.0%
!!! AAAAGGAGATATATCTTTTT+GGG + chr2_2:27434304-27434323 Msa0246300:intron 20.0%
!! TATATACAAATTAATTGCGA+CGG + chr2_2:27434504-27434523 Msa0246300:intron 20.0%
!!! ATCTATTTTTTTCAACAACA+AGG - chr2_2:27434747-27434766 None:intergenic 20.0%
!!! TCATTTTTAAGTGTTTGTTT+TGG - chr2_2:27434849-27434868 None:intergenic 20.0%
!! AAAAAGATTCTTTAAATGTG+TGG - chr2_2:27435347-27435366 None:intergenic 20.0%
!!! AATATTTTAAAACAAGAGCT+CGG - chr2_2:27435861-27435880 None:intergenic 20.0%
!! TACTAATATACAAAGTCAAA+TGG + chr2_2:27436181-27436200 Msa0246300:intron 20.0%
!!! TTAATTTTATGAACTCAACA+TGG - chr2_2:27436778-27436797 Msa0246310:intron 20.0%
!!! GTAAAAAAACTAATTTGTTG+TGG + chr2_2:27436962-27436981 Msa0246300:intron 20.0%
!!! TTTTTTTCTTAACCAGATTT+AGG + chr2_2:27437858-27437877 Msa0246300:intron 20.0%
!!! TATGAACTTTGTTTTTATTG+GGG + chr2_2:27438019-27438038 Msa0246300:intron 20.0%
!!! TCAAAATTTTATCAATTGCT+AGG - chr2_2:27438362-27438381 Msa0246310:intron 20.0%
! GAAGAAATTGAAAATACAGA+TGG - chr2_2:27432985-27433004 None:intergenic 25.0%
! AACAAAAAACAACCAATTAC+AGG + chr2_2:27433005-27433024 Msa0246300:CDS 25.0%
! TAACAGAATGTGATTAAACT+TGG + chr2_2:27433119-27433138 Msa0246300:intron 25.0%
! AATGGTTAGAAATGGAAATT+GGG + chr2_2:27433229-27433248 Msa0246300:CDS 25.0%
! CAAACATGAATTATTTACCA+AGG - chr2_2:27433336-27433355 None:intergenic 25.0%
! CTTGGTAAATAATTCATGTT+TGG + chr2_2:27433334-27433353 Msa0246300:intron 25.0%
!! AATATATACCATGCTTTTCT+TGG - chr2_2:27433452-27433471 None:intergenic 25.0%
!! AATATTTAGGAGCCAATTTT+AGG + chr2_2:27433503-27433522 Msa0246300:intron 25.0%
!!! TTGTTTTGTTCTTTTGTTTG+TGG + chr2_2:27433689-27433708 Msa0246300:intron 25.0%
!!! GATTTAGAGAGTACTTTTTT+TGG + chr2_2:27434078-27434097 Msa0246300:intron 25.0%
!!! AGATTTAGAGAGTATTTGAA+AGG + chr2_2:27434106-27434125 Msa0246300:intron 25.0%
!!! TATTTTTTTCAACAACAAGG+AGG - chr2_2:27434744-27434763 None:intergenic 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG + chr2_2:27434782-27434801 Msa0246300:intron 25.0%
! TCCTAAAATGAAAAGCTATT+AGG - chr2_2:27434786-27434805 None:intergenic 25.0%
! TAGCATAGTCAGATAAAATT+AGG + chr2_2:27435158-27435177 Msa0246300:intron 25.0%
! AAATGAGAGTAATCTTATCT+TGG - chr2_2:27435250-27435269 None:intergenic 25.0%
!! AGATAAGATTACTCTCATTT+TGG + chr2_2:27435250-27435269 Msa0246300:intron 25.0%
! TAAACAAAACTACTACTTCA+AGG + chr2_2:27435284-27435303 Msa0246300:intron 25.0%
! TGACATTACCTTGATAAAAT+AGG - chr2_2:27435384-27435403 None:intergenic 25.0%
! ATGTCAAACTAAAGATAGTA+TGG + chr2_2:27435398-27435417 Msa0246300:intron 25.0%
! AACAATGCATTATTATATGC+AGG + chr2_2:27435525-27435544 Msa0246300:intron 25.0%
! ACAATGCATTATTATATGCA+GGG + chr2_2:27435526-27435545 Msa0246300:intron 25.0%
!!! ATATTTTAAAACAAGAGCTC+GGG - chr2_2:27435860-27435879 None:intergenic 25.0%
!! TTAGGTCATTTAAAATGAGA+CGG - chr2_2:27436114-27436133 None:intergenic 25.0%
! TGTATCAAATAATATGAGAC+AGG + chr2_2:27436331-27436350 Msa0246300:intron 25.0%
! GTATCAAATAATATGAGACA+GGG + chr2_2:27436332-27436351 Msa0246300:intron 25.0%
! ATTAGAAAAATCTTAGACGT+AGG - chr2_2:27436400-27436419 Msa0246310:three_prime_UTR 25.0%
!! ATTTTTCTAATGATTGAACC+AGG + chr2_2:27436409-27436428 Msa0246300:intron 25.0%
! GATAATTTGACATTTGCAAA+TGG + chr2_2:27436594-27436613 Msa0246300:CDS 25.0%
! AGTAATACTAAAATGTGTCT+TGG - chr2_2:27437054-27437073 Msa0246310:intron 25.0%
!!! AGTTCTTAGTTTGTATGAAT+TGG - chr2_2:27437431-27437450 Msa0246310:intron 25.0%
! GAAACAATTGATAGACTTAT+TGG + chr2_2:27437461-27437480 Msa0246300:intron 25.0%
!! TTGGTTTCAAATTCAACTTT+TGG + chr2_2:27437480-27437499 Msa0246300:intron 25.0%
!!! TCAAATTCAACTTTTGGAAT+CGG + chr2_2:27437486-27437505 Msa0246300:intron 25.0%
! GAAAAATAAACCTCCATAAA+AGG + chr2_2:27437542-27437561 Msa0246300:intron 25.0%
!!! AATAGAATTTTCAGGATGAA+AGG - chr2_2:27437594-27437613 Msa0246310:intron 25.0%
! AACAACATAAGAGTTTCTTA+AGG + chr2_2:27437630-27437649 Msa0246300:intron 25.0%
! ATTTATAAAGTTTGGCATAG+TGG + chr2_2:27437731-27437750 Msa0246300:intron 25.0%
! TTTATAAAGTTTGGCATAGT+GGG + chr2_2:27437732-27437751 Msa0246300:intron 25.0%
! TATACCTAAAATTTGGTCAT+TGG + chr2_2:27437790-27437809 Msa0246300:intron 25.0%
!!! TTCGTTTAATTTTGACAAAG+AGG + chr2_2:27438202-27438221 Msa0246300:intron 25.0%
!!! AGAGGTTGAAACTTTTTTTT+TGG + chr2_2:27438220-27438239 Msa0246300:intron 25.0%
!! TCAATTGCTAGGAATTTTAT+TGG - chr2_2:27438351-27438370 Msa0246310:intron 25.0%
! GGCAATATTATCAGAAAATT+TGG + chr2_2:27438597-27438616 Msa0246300:CDS 25.0%
!! AGAAAATTTGGTGATAATGA+AGG + chr2_2:27438609-27438628 Msa0246300:CDS 25.0%
!! GAAAATTTGGTGATAATGAA+GGG + chr2_2:27438610-27438629 Msa0246300:CDS 25.0%
GAAATTGAAAATACAGATGG+TGG - chr2_2:27432982-27433001 None:intergenic 30.0%
! CTTAAGTTTTCACCTGTAAT+TGG - chr2_2:27433020-27433039 None:intergenic 30.0%
CAATTACAGGTGAAAACTTA+AGG + chr2_2:27433018-27433037 Msa0246300:intron 30.0%
AATGTGATTAAACTTGGAGA+AGG + chr2_2:27433125-27433144 Msa0246300:CDS 30.0%
AGATGGTTGGATTAAAAGAA+TGG + chr2_2:27433211-27433230 Msa0246300:CDS 30.0%
GAATGGTTAGAAATGGAAAT+TGG + chr2_2:27433228-27433247 Msa0246300:CDS 30.0%
!!! ATAGATAGCTCTTTTTTGCT+TGG + chr2_2:27433266-27433285 Msa0246300:CDS 30.0%
! AAGAAGCATATATATGTCCA+AGG + chr2_2:27433380-27433399 Msa0246300:intron 30.0%
AAGCATGGTATATATTCATG+TGG + chr2_2:27433456-27433475 Msa0246300:intron 30.0%
AGCATGGTATATATTCATGT+GGG + chr2_2:27433457-27433476 Msa0246300:intron 30.0%
TTGTATCTTGGACCTAAAAT+TGG - chr2_2:27433518-27433537 None:intergenic 30.0%
ATCAATGCAGAATTGTATCT+TGG - chr2_2:27433530-27433549 None:intergenic 30.0%
TACTAAAGTGAAATGTTGTG+AGG - chr2_2:27433834-27433853 None:intergenic 30.0%
TCACAACATTTCACTTTAGT+AGG + chr2_2:27433833-27433852 Msa0246300:intron 30.0%
!!! TTAGAGAGTACTTTTTTTGG+TGG + chr2_2:27434081-27434100 Msa0246300:intron 30.0%
!! TAGAGAGTATTTGAAAGGTT+TGG + chr2_2:27434111-27434130 Msa0246300:intron 30.0%
AATAAATGGGTGAACTTGAA+AGG - chr2_2:27434340-27434359 None:intergenic 30.0%
! ATAATTTAATGGCGGAAAGA+TGG - chr2_2:27434557-27434576 None:intergenic 30.0%
ATCTTTCCGCCATTAAATTA+TGG + chr2_2:27434556-27434575 Msa0246300:intron 30.0%
TCTTTCCGCCATTAAATTAT+GGG + chr2_2:27434557-27434576 Msa0246300:intron 30.0%
!! AAGCTTTGAAAACAGCATTT+AGG - chr2_2:27435022-27435041 None:intergenic 30.0%
!!! GAAAGAATCTTGCCTTTTTT+TGG + chr2_2:27435195-27435214 Msa0246300:intron 30.0%
AAGATTCTTTAAATGTGTGG+TGG - chr2_2:27435344-27435363 None:intergenic 30.0%
! AGTAGTCACCTATTTTATCA+AGG + chr2_2:27435373-27435392 Msa0246300:intron 30.0%
AACTAAAGATAGTATGGTCA+AGG + chr2_2:27435404-27435423 Msa0246300:intron 30.0%
ACTAAAGATTGTATCTTGTC+CGG + chr2_2:27435481-27435500 Msa0246300:intron 30.0%
CAATGCATTATTATATGCAG+GGG + chr2_2:27435527-27435546 Msa0246300:intron 30.0%
ACCTTATAAGGTGAATAAGT+GGG - chr2_2:27435575-27435594 None:intergenic 30.0%
AAGTCAAATGGTAGCATATA+AGG + chr2_2:27436193-27436212 Msa0246300:intron 30.0%
! TTTTGTTGCAGATAAACGTT+AGG + chr2_2:27436360-27436379 Msa0246300:intron 30.0%
! AGTGTTGCTAGTAACAAATT+TGG + chr2_2:27436477-27436496 Msa0246300:CDS 30.0%
! ACAAATTTGGTTTACACGAT+TGG + chr2_2:27436490-27436509 Msa0246300:CDS 30.0%
! TACTTTAAAAGTTGTCCATG+AGG - chr2_2:27436540-27436559 Msa0246310:three_prime_UTR 30.0%
ATAACTGTCTCATTTAACGT+GGG - chr2_2:27436567-27436586 Msa0246310:three_prime_UTR 30.0%
AATAACTGTCTCATTTAACG+TGG - chr2_2:27436568-27436587 Msa0246310:three_prime_UTR 30.0%
! TTTTGCTCTTTTCTCTCTAT+AGG + chr2_2:27436690-27436709 Msa0246300:intron 30.0%
! TTTGCTCTTTTCTCTCTATA+GGG + chr2_2:27436691-27436710 Msa0246300:intron 30.0%
GACAATGCTCATTAAACTTA+AGG - chr2_2:27436936-27436955 Msa0246310:intron 30.0%
AGGAAGGACATTAGAAAATT+TGG - chr2_2:27437286-27437305 Msa0246310:intron 30.0%
!! CAATGTTCTGAAAACCAAAA+TGG + chr2_2:27437320-27437339 Msa0246300:intron 30.0%
AACCAAAATGGAAATCGAAT+TGG + chr2_2:27437332-27437351 Msa0246300:intron 30.0%
! TACCAATTCGATTTCCATTT+TGG - chr2_2:27437337-27437356 Msa0246310:intron 30.0%
TACAAACTAAGAACTGATTG+TGG + chr2_2:27437436-27437455 Msa0246300:intron 30.0%
!!! CAAATTCAACTTTTGGAATC+GGG + chr2_2:27437487-27437506 Msa0246300:intron 30.0%
AAATAAACCTCCATAAAAGG+TGG + chr2_2:27437545-27437564 Msa0246300:intron 30.0%
!! TCTTATGTTGTTTCAGAGTT+AGG - chr2_2:27437622-27437641 Msa0246310:intron 30.0%
TTATAAAGTTTGGCATAGTG+GGG + chr2_2:27437733-27437752 Msa0246300:intron 30.0%
!! GATGGGTTATACCTAAAATT+TGG + chr2_2:27437783-27437802 Msa0246300:intron 30.0%
! ATCTCCAATGACCAAATTTT+AGG - chr2_2:27437797-27437816 Msa0246310:intron 30.0%
ATATGTCATGTTTCAAGACT+GGG - chr2_2:27437825-27437844 Msa0246310:intron 30.0%
AATATGTCATGTTTCAAGAC+TGG - chr2_2:27437826-27437845 Msa0246310:intron 30.0%
TGGCTAAAAGGAATTAACAA+AGG + chr2_2:27437893-27437912 Msa0246300:CDS 30.0%
!!! GAAACTTTTTTTTTGGTGTC+CGG + chr2_2:27438227-27438246 Msa0246300:intron 30.0%
!!! AAACTTTTTTTTTGGTGTCC+GGG + chr2_2:27438228-27438247 Msa0246300:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr2_2:27438267-27438286 Msa0246310:intron 30.0%
! TATGTTAGTTTCAACCACTT+CGG - chr2_2:27438310-27438329 Msa0246310:intron 30.0%
TTGATCAGATTAAATAGCCT+TGG - chr2_2:27438534-27438553 Msa0246310:three_prime_UTR 30.0%
AGTCTTAATTCTGACTTTGT+TGG + chr2_2:27438690-27438709 Msa0246300:CDS 30.0%
TGTTCAGATCTTACTGAATA+AGG + chr2_2:27438741-27438760 Msa0246300:three_prime_UTR 30.0%
GTTCAGATCTTACTGAATAA+GGG + chr2_2:27438742-27438761 Msa0246300:three_prime_UTR 30.0%
TTCAGATCTTACTGAATAAG+GGG + chr2_2:27438743-27438762 Msa0246300:three_prime_UTR 30.0%
!! GAAAGGAGGATTGGTTATAT+TGG - chr2_2:27432845-27432864 None:intergenic 35.0%
CAAAATTTACCAGGAGTGAA+AGG - chr2_2:27432862-27432881 None:intergenic 35.0%
AGTGTGACACAAAATTTACC+AGG - chr2_2:27432871-27432890 None:intergenic 35.0%
TCTAGCAAAACTGGATCTAT+GGG - chr2_2:27432955-27432974 None:intergenic 35.0%
TTCTAGCAAAACTGGATCTA+TGG - chr2_2:27432956-27432975 None:intergenic 35.0%
TTGTATACAGCTACAAGAGA+TGG + chr2_2:27433194-27433213 Msa0246300:CDS 35.0%
GAAATGGAAATTGGGAGAAT+TGG + chr2_2:27433237-27433256 Msa0246300:CDS 35.0%
GGAATCACTACATCTAAAGA+TGG + chr2_2:27433287-27433306 Msa0246300:CDS 35.0%
ATCACTACATCTAAAGATGG+TGG + chr2_2:27433290-27433309 Msa0246300:CDS 35.0%
GTTATCCTTTCACAAGTGAA+TGG + chr2_2:27433610-27433629 Msa0246300:CDS 35.0%
!! AGATTTTGAGTGTTACAAGC+AGG + chr2_2:27433736-27433755 Msa0246300:intron 35.0%
!! GATTTTGAGTGTTACAAGCA+GGG + chr2_2:27433737-27433756 Msa0246300:intron 35.0%
TTTCACTTTAGTAGGTGCAA+CGG + chr2_2:27433841-27433860 Msa0246300:intron 35.0%
!! ATGGTATTGGTTTGGGATTT+GGG - chr2_2:27433970-27433989 None:intergenic 35.0%
TTATGTCTGATAACCCACTT+GGG - chr2_2:27434001-27434020 None:intergenic 35.0%
AATTAATTGCGACGGAAAGT+TGG + chr2_2:27434512-27434531 Msa0246300:intron 35.0%
CAAACGCACCCATAATTTAA+TGG - chr2_2:27434568-27434587 None:intergenic 35.0%
! ATTATAGGGTGCGTTTGTTT+TGG - chr2_2:27434920-27434939 None:intergenic 35.0%
CTACGATTGTCTATCCATTA+TGG - chr2_2:27435101-27435120 None:intergenic 35.0%
!! CATAATGGATAGACAATCGT+AGG + chr2_2:27435099-27435118 Msa0246300:intron 35.0%
CTATGCTATTATCATCTTGC+TGG - chr2_2:27435146-27435165 None:intergenic 35.0%
CAATTCAGTGGTCCAAAAAA+AGG - chr2_2:27435210-27435229 None:intergenic 35.0%
!!! CTTTTTTTGGACCACTGAAT+TGG + chr2_2:27435208-27435227 Msa0246300:intron 35.0%
TCTTAGTCATTCCAATTCAG+TGG - chr2_2:27435222-27435241 None:intergenic 35.0%
!! ATTAGGCTGATTTGATGGAA+AGG + chr2_2:27435435-27435454 Msa0246300:intron 35.0%
!! TTAGGCTGATTTGATGGAAA+GGG + chr2_2:27435436-27435455 Msa0246300:intron 35.0%
ACCCACTTATTCACCTTATA+AGG + chr2_2:27435571-27435590 Msa0246300:intron 35.0%
CACCTTATAAGGTGAATAAG+TGG - chr2_2:27435576-27435595 None:intergenic 35.0%
TGGCTAGAATTCACCTTATA+AGG - chr2_2:27435587-27435606 None:intergenic 35.0%
!!! TTTTTTGTCAGATAGCCTAG+TGG - chr2_2:27435607-27435626 None:intergenic 35.0%
GTTAACGAACAAACACTAGT+AGG - chr2_2:27435998-27436017 None:intergenic 35.0%
! GTCATTTAAAATGAGACGGA+GGG - chr2_2:27436110-27436129 None:intergenic 35.0%
ATGGTAGCATATAAGGTTGT+TGG + chr2_2:27436200-27436219 Msa0246300:intron 35.0%
TATTACATCATCTGCAAACC+TGG - chr2_2:27436430-27436449 Msa0246310:three_prime_UTR 35.0%
!! GATGTAATAGAAGCATCAGA+TGG + chr2_2:27436441-27436460 Msa0246300:CDS 35.0%
TGGTTTACACGATTGGTATT+TGG + chr2_2:27436497-27436516 Msa0246300:CDS 35.0%
TTGGTATTTGGATATGCTAG+AGG + chr2_2:27436509-27436528 Msa0246300:CDS 35.0%
CACAACATAATCTTCATCCT+TGG - chr2_2:27436631-27436650 Msa0246310:three_prime_UTR 35.0%
CAAGGATGAAGATTATGTTG+TGG + chr2_2:27436629-27436648 Msa0246300:CDS 35.0%
TCATTCAACAATGTCCTAGT+GGG - chr2_2:27436816-27436835 Msa0246310:intron 35.0%
TTCATTCAACAATGTCCTAG+TGG - chr2_2:27436817-27436836 Msa0246310:intron 35.0%
! TTTGTGGAAGCTTTAACATG+TGG + chr2_2:27437028-27437047 Msa0246300:intron 35.0%
TGTTGTGTTTGAGAGTTAAG+AGG + chr2_2:27437099-27437118 Msa0246300:intron 35.0%
GTTTGAGAGTTAAGAGGAAA+AGG + chr2_2:27437105-27437124 Msa0246300:intron 35.0%
TCTAATGTCCTTCCTCAATA+TGG + chr2_2:27437291-27437310 Msa0246300:intron 35.0%
ACATTGCGAAAACCATATTG+AGG - chr2_2:27437306-27437325 Msa0246310:intron 35.0%
TTGGTAAGATCTCTCAATCA+TGG + chr2_2:27437351-27437370 Msa0246300:intron 35.0%
TCTCTCAATCATGGTTCAAT+CGG + chr2_2:27437360-27437379 Msa0246300:intron 35.0%
!! AGAATTTTCAGGATGAAAGG+AGG - chr2_2:27437591-27437610 Msa0246310:intron 35.0%
!! ATGTTGTTTCAGAGTTAGGA+GGG - chr2_2:27437618-27437637 Msa0246310:intron 35.0%
!! TATGTTGTTTCAGAGTTAGG+AGG - chr2_2:27437619-27437638 Msa0246310:intron 35.0%
AGTGGTAACACAATCTAAGA+TGG + chr2_2:27437765-27437784 Msa0246300:intron 35.0%
! GTGGTAACACAATCTAAGAT+GGG + chr2_2:27437766-27437785 Msa0246300:intron 35.0%
AATATCAATCTTGCTCCTGA+TGG + chr2_2:27437959-27437978 Msa0246300:CDS 35.0%
ATTGGGGAAATATTACTGAG+TGG + chr2_2:27438035-27438054 Msa0246300:intron 35.0%
TTGGGGAAATATTACTGAGT+GGG + chr2_2:27438036-27438055 Msa0246300:intron 35.0%
TGCATAATATATGCAAGGTC+CGG - chr2_2:27438262-27438281 Msa0246310:intron 35.0%
TGCTGCAGTTAACTTCTAAA+AGG + chr2_2:27438457-27438476 Msa0246300:intron 35.0%
! CAGTTAACTTCTAAAAGGCT+GGG + chr2_2:27438462-27438481 Msa0246300:intron 35.0%
! AGTTAACTTCTAAAAGGCTG+GGG + chr2_2:27438463-27438482 Msa0246300:intron 35.0%
!! AAATGAAGCAAAGAAGTGCT+TGG - chr2_2:27438511-27438530 Msa0246310:three_prime_UTR 35.0%
ACTTCTTTGCTTCATTTCCA+AGG + chr2_2:27438514-27438533 Msa0246300:CDS 35.0%
TAGTGCAACAAAATCAGCTA+TGG + chr2_2:27438554-27438573 Msa0246300:CDS 35.0%
! ATTTGGTGATAATGAAGGGA+AGG + chr2_2:27438614-27438633 Msa0246300:CDS 35.0%
!!! TAGTTTTGTAACTTCAGCTG+TGG + chr2_2:27438641-27438660 Msa0246300:CDS 35.0%
TAAGACTTCCTAGGTAAAGA+TGG - chr2_2:27438677-27438696 Msa0246310:three_prime_UTR 35.0%
AGTCAGAATTAAGACTTCCT+AGG - chr2_2:27438686-27438705 Msa0246310:three_prime_UTR 35.0%
TCAGATCTTACTGAATAAGG+GGG + chr2_2:27438744-27438763 Msa0246300:three_prime_UTR 35.0%
!! GTGGTGTTGGTTTGTATGAT+TGG - chr2_2:27432733-27432752 None:intergenic 40.0%
GATGAATAACCCACTTGTGT+TGG - chr2_2:27432760-27432779 None:intergenic 40.0%
!! AACACACAGCTTCTAAAGCA+TGG + chr2_2:27432816-27432835 Msa0246300:exon 40.0%
AATTTACCAGGAGTGAAAGG+AGG - chr2_2:27432859-27432878 None:intergenic 40.0%
AACTAAAGCTGCTAGAACCA+AGG - chr2_2:27432902-27432921 None:intergenic 40.0%
!! GGTGGTATTTCTAGCAAAAC+TGG - chr2_2:27432964-27432983 None:intergenic 40.0%
TCATCCACACAAACATCTTC+TGG - chr2_2:27433164-27433183 None:intergenic 40.0%
GATGTTTGTGTGGATGAAGA+TGG + chr2_2:27433167-27433186 Msa0246300:CDS 40.0%
ATACAGCTACAAGAGATGGT+TGG + chr2_2:27433198-27433217 Msa0246300:CDS 40.0%
CATTGTCTGTGATACTACCT+TGG + chr2_2:27433316-27433335 Msa0246300:CDS 40.0%
!! TATTTTGCAGGGTTTGCTCA+AGG + chr2_2:27433567-27433586 Msa0246300:intron 40.0%
TTGCTCAAGGTTACAGAAGA+AGG + chr2_2:27433580-27433599 Msa0246300:CDS 40.0%
GAGAACCATTCACTTGTGAA+AGG - chr2_2:27433618-27433637 None:intergenic 40.0%
TTGTAGACCATCATATGACG+CGG + chr2_2:27433767-27433786 Msa0246300:intron 40.0%
GAAATGTTGTGAGGCAATTG+CGG - chr2_2:27433825-27433844 None:intergenic 40.0%
TTCACTTTAGTAGGTGCAAC+GGG + chr2_2:27433842-27433861 Msa0246300:intron 40.0%
! ATTCTCTCCGGTGTCAATTT+AGG - chr2_2:27433923-27433942 None:intergenic 40.0%
!! GATGGTATTGGTTTGGGATT+TGG - chr2_2:27433971-27433990 None:intergenic 40.0%
AATCCCAAACCAATACCATC+AGG + chr2_2:27433971-27433990 Msa0246300:intron 40.0%
GTTATGTCTGATAACCCACT+TGG - chr2_2:27434002-27434021 None:intergenic 40.0%
AAGTTGGATAGACAAGCAGT+TGG + chr2_2:27434528-27434547 Msa0246300:intron 40.0%
ACGCACCCATAATTTAATGG+CGG - chr2_2:27434565-27434584 None:intergenic 40.0%
AACAGCATTTAGGTGAGTTG+AGG - chr2_2:27435012-27435031 None:intergenic 40.0%
! TGGTCAAGGTAATGTCGATT+AGG + chr2_2:27435418-27435437 Msa0246300:intron 40.0%
!! TGTCGATTAGGCTGATTTGA+TGG + chr2_2:27435430-27435449 Msa0246300:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG + chr2_2:27435589-27435608 Msa0246300:intron 40.0%
! GGTCATTTAAAATGAGACGG+AGG - chr2_2:27436111-27436130 None:intergenic 40.0%
GCAACTCATCTTTGCTCAAA+TGG - chr2_2:27436756-27436775 Msa0246310:intron 40.0%
!! ATAAAAGGTTGATGCCCACT+AGG + chr2_2:27436799-27436818 Msa0246300:intron 40.0%
GAAAAGGAACAAGACGACTT+TGG + chr2_2:27437121-27437140 Msa0246300:intron 40.0%
GAAAAATCCACCACCTTGTT+TGG + chr2_2:27437193-27437212 Msa0246300:intron 40.0%
!! CAAAAGCACTCTTCCAAACA+AGG - chr2_2:27437209-27437228 Msa0246310:intron 40.0%
TGCGAAAACCATATTGAGGA+AGG - chr2_2:27437302-27437321 Msa0246310:intron 40.0%
TGGTTCAATCGGTTGAATCA+CGG + chr2_2:27437371-27437390 Msa0246300:intron 40.0%
!!! ATTCAACTTTTGGAATCGGG+CGG + chr2_2:27437490-27437509 Msa0246300:intron 40.0%
ATGAAAGGAGGACAAAATGG+AGG - chr2_2:27437579-27437598 Msa0246310:intron 40.0%
AGGATGAAAGGAGGACAAAA+TGG - chr2_2:27437582-27437601 Msa0246310:intron 40.0%
! AGGAGGGGAATAGAATTTTC+AGG - chr2_2:27437602-27437621 Msa0246310:intron 40.0%
!! TGTTGTTTCAGAGTTAGGAG+GGG - chr2_2:27437617-27437636 Msa0246310:intron 40.0%
! ATAGTGGGGTAACTTGATAG+TGG + chr2_2:27437747-27437766 Msa0246300:intron 40.0%
TAACCAGATTTAGGTGTGTG+AGG + chr2_2:27437867-27437886 Msa0246300:intron 40.0%
ATCTTCATTGAAAACCTCCC+TGG + chr2_2:27437926-27437945 Msa0246300:CDS 40.0%
GGAGCAAGATTGATATTGTC+AGG - chr2_2:27437956-27437975 Msa0246310:three_prime_UTR 40.0%
CATAATATATGCAAGGTCCG+GGG - chr2_2:27438260-27438279 Msa0246310:intron 40.0%
GCATAATATATGCAAGGTCC+GGG - chr2_2:27438261-27438280 Msa0246310:intron 40.0%
TTGTCCTTAGCTAAACTCAC+AGG + chr2_2:27438282-27438301 Msa0246300:intron 40.0%
TGTCCTTAGCTAAACTCACA+GGG + chr2_2:27438283-27438302 Msa0246300:intron 40.0%
! GCAGTTAACTTCTAAAAGGC+TGG + chr2_2:27438461-27438480 Msa0246300:intron 40.0%
! GAAGTGCTTGGATACTTTAG+AGG - chr2_2:27438499-27438518 Msa0246310:three_prime_UTR 40.0%
TGCAACAAAATCAGCTATGG+TGG + chr2_2:27438557-27438576 Msa0246300:CDS 40.0%
TCAGCTATGGTGGTAAATGT+TGG + chr2_2:27438567-27438586 Msa0246300:CDS 40.0%
GTGGTAAATGTTGGAACTGA+TGG + chr2_2:27438576-27438595 Msa0246300:CDS 40.0%
CAACACTATGCAATTGACAG+TGG - chr2_2:27438723-27438742 Msa0246310:three_prime_UTR 40.0%
! ATAACCCACTTGTGTTGGTC+TGG - chr2_2:27432755-27432774 None:intergenic 45.0%
GCAACCAGAAGATGTTTGTG+TGG + chr2_2:27433157-27433176 Msa0246300:CDS 45.0%
GCAAGAAGCCAAGAAAAGCA+TGG + chr2_2:27433441-27433460 Msa0246300:intron 45.0%
ATGTTACGTCCGATGCAACT+TGG - chr2_2:27433871-27433890 None:intergenic 45.0%
TAGCCCACCTAAATTGACAC+CGG + chr2_2:27433913-27433932 Msa0246300:intron 45.0%
! TCTCCGGTGTCAATTTAGGT+GGG - chr2_2:27433919-27433938 None:intergenic 45.0%
!! TGGCCTGATGGTATTGGTTT+GGG - chr2_2:27433977-27433996 None:intergenic 45.0%
!! TTGGCCTGATGGTATTGGTT+TGG - chr2_2:27433978-27433997 None:intergenic 45.0%
! GCATTTAGGTGAGTTGAGGT+CGG - chr2_2:27435008-27435027 None:intergenic 45.0%
ATCGTGAGAGCTCACACAAA+AGG - chr2_2:27435057-27435076 None:intergenic 45.0%
!! TGTGGTGGACAAGATAGACT+AGG - chr2_2:27435329-27435348 None:intergenic 45.0%
ATTATTATATGCAGGGGCCG+AGG + chr2_2:27435533-27435552 Msa0246300:intron 45.0%
!! AGGTGAATAAGTGGGTTGTC+CGG - chr2_2:27435567-27435586 None:intergenic 45.0%
AAAACAAGAGCTCGGGTTCA+AGG - chr2_2:27435853-27435872 None:intergenic 45.0%
!! AAATGGTGTTGCACTGTCCA+AGG + chr2_2:27436611-27436630 Msa0246300:CDS 45.0%
ATGTTGTGGTGTGCGAAACT+TGG + chr2_2:27436643-27436662 Msa0246300:CDS 45.0%
! GGAACAAGACGACTTTGGAA+TGG + chr2_2:27437126-27437145 Msa0246300:intron 45.0%
!! ACAAGACGACTTTGGAATGG+AGG + chr2_2:27437129-27437148 Msa0246300:intron 45.0%
GAGAGGAGAGAGAAGAGAAA+AGG + chr2_2:27437153-27437172 Msa0246300:intron 45.0%
AAGCACTCTTCCAAACAAGG+TGG - chr2_2:27437206-27437225 Msa0246310:intron 45.0%
GGTTCAATCGGTTGAATCAC+GGG + chr2_2:27437372-27437391 Msa0246300:intron 45.0%
TGAATCACGGGTGCATGAAT+AGG + chr2_2:27437384-27437403 Msa0246300:intron 45.0%
!! GGAGTATCCACCTTTTATGG+AGG - chr2_2:27437555-27437574 Msa0246310:intron 45.0%
!!! GGAGGAGTATCCACCTTTTA+TGG - chr2_2:27437558-27437577 Msa0246310:intron 45.0%
AAAGGAGGACAAAATGGAGG+AGG - chr2_2:27437576-27437595 Msa0246310:intron 45.0%
ATGCCTCACACACCTAAATC+TGG - chr2_2:27437873-27437892 Msa0246310:intron 45.0%
GATTTAGGTGTGTGAGGCAT+TGG + chr2_2:27437873-27437892 Msa0246300:intron 45.0%
!! TGTGTGAGGCATTGGCTAAA+AGG + chr2_2:27437881-27437900 Msa0246300:CDS 45.0%
TTCATTGAAAACCTCCCTGG+TGG + chr2_2:27437929-27437948 Msa0246300:CDS 45.0%
TGATATTGTCAGGTCCACCA+GGG - chr2_2:27437946-27437965 Msa0246310:three_prime_UTR 45.0%
TTGATATTGTCAGGTCCACC+AGG - chr2_2:27437947-27437966 Msa0246310:three_prime_UTR 45.0%
! TTGCTCCTGATGGCTCATTT+TGG + chr2_2:27437969-27437988 Msa0246300:CDS 45.0%
! TGGCTCATTTTGGATCGCTT+TGG + chr2_2:27437979-27437998 Msa0246300:CDS 45.0%
TTCGAGGACCATCTTTACCT+AGG + chr2_2:27438666-27438685 Msa0246300:CDS 45.0%
!! AAAAAAAATATATATCTAAA+AGG + chr2_2:27434287-27434306 Msa0246300:intron 5.0%
!!! TATTGATTATTTAAATAAAT+GGG - chr2_2:27434353-27434372 None:intergenic 5.0%
!!! TTATTGATTATTTAAATAAA+TGG - chr2_2:27434354-27434373 None:intergenic 5.0%
!!! AAAAAGATATTTTTTTTTTA+GGG - chr2_2:27437011-27437030 Msa0246310:intron 5.0%
! TTGTGTTGGTCTGGTGGTGT+TGG - chr2_2:27432746-27432765 None:intergenic 50.0%
ACCACCAGACCAACACAAGT+GGG + chr2_2:27432748-27432767 Msa0246300:five_prime_UTR 50.0%
ACCAATCCTCCTTTCACTCC+TGG + chr2_2:27432850-27432869 Msa0246300:CDS 50.0%
ACCAGGAGTGAAAGGAGGAT+TGG - chr2_2:27432854-27432873 None:intergenic 50.0%
TGTCACACTCACCTCAACCT+TGG + chr2_2:27432882-27432901 Msa0246300:CDS 50.0%
AGCTGCTAGAACCAAGGTTG+AGG - chr2_2:27432896-27432915 None:intergenic 50.0%
AATTGCGGCTGCATGCAGTT+GGG - chr2_2:27433810-27433829 None:intergenic 50.0%
AACGGGCATCCAAGTTGCAT+CGG + chr2_2:27433859-27433878 Msa0246300:intron 50.0%
! CTCTCCGGTGTCAATTTAGG+TGG - chr2_2:27433920-27433939 None:intergenic 50.0%
TCGAGGTCTTCGATTCTCTC+CGG - chr2_2:27433935-27433954 None:intergenic 50.0%
!! TTGGGTTGGCCTGATGGTAT+TGG - chr2_2:27433983-27434002 None:intergenic 50.0%
GTCTGATAACCCACTTGGGT+TGG - chr2_2:27433997-27434016 None:intergenic 50.0%
GGTGGACAAGATAGACTAGG+TGG - chr2_2:27435326-27435345 None:intergenic 50.0%
ACCAACTGAGCTATGCTCAC+CGG - chr2_2:27435503-27435522 None:intergenic 50.0%
!! GTGAATAAGTGGGTTGTCCG+GGG - chr2_2:27435565-27435584 None:intergenic 50.0%
!! GGTGAATAAGTGGGTTGTCC+GGG - chr2_2:27435566-27435585 None:intergenic 50.0%
TTGAGACGCGTCAGACACAA+AGG - chr2_2:27435661-27435680 None:intergenic 50.0%
ATGCTAGAGGCAAGACCTCA+TGG + chr2_2:27436522-27436541 Msa0246300:CDS 50.0%
!! GACTTTGGAATGGAGGAGAG+AGG + chr2_2:27437136-27437155 Msa0246300:intron 50.0%
CACTCTTCCAAACAAGGTGG+TGG - chr2_2:27437203-27437222 Msa0246310:intron 50.0%
GCGATCCAAAATGAGCCATC+AGG - chr2_2:27437977-27437996 Msa0246310:three_prime_UTR 50.0%
GGTCCCTGTGAGTTTAGCTA+AGG - chr2_2:27438289-27438308 Msa0246310:intron 50.0%
TAAACTCACAGGGACCGAAG+TGG + chr2_2:27438293-27438312 Msa0246300:intron 50.0%
AACTTCAGCTGTGGAGTTCG+AGG + chr2_2:27438650-27438669 Msa0246300:CDS 50.0%
CACCACCAGACCAACACAAG+TGG + chr2_2:27432747-27432766 Msa0246300:five_prime_UTR 55.0%
! ACCCACTTGTGTTGGTCTGG+TGG - chr2_2:27432752-27432771 None:intergenic 55.0%
ATTGCGGCTGCATGCAGTTG+GGG - chr2_2:27433809-27433828 None:intergenic 55.0%
CAATTGCGGCTGCATGCAGT+TGG - chr2_2:27433811-27433830 None:intergenic 55.0%
GGAGAGAATCGAAGACCTCG+AGG + chr2_2:27433934-27433953 Msa0246300:intron 55.0%
TACCATCAGGCCAACCCAAG+TGG + chr2_2:27433984-27434003 Msa0246300:intron 55.0%
ACCATCAGGCCAACCCAAGT+GGG + chr2_2:27433985-27434004 Msa0246300:intron 55.0%
TCCGGTGAGCATAGCTCAGT+TGG + chr2_2:27435499-27435518 Msa0246300:intron 55.0%
CAAGAGCTCGGGTTCAAGGA+TGG - chr2_2:27435849-27435868 None:intergenic 55.0%
TATTGTCAGGTCCACCAGGG+AGG - chr2_2:27437943-27437962 Msa0246310:three_prime_UTR 55.0%
CTTGCGGCCGCGTCATATGA+TGG - chr2_2:27433777-27433796 None:intergenic 60.0%
! GTTGGGGACACTGCTGCTTG+CGG - chr2_2:27433793-27433812 None:intergenic 60.0%
! TTGGGAGTGTGCTCTCCTCG+AGG - chr2_2:27433952-27433971 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTGA+TGG - chr2_2:27433989-27434008 None:intergenic 60.0%
GTTGTCCGGGGTTCGAACCT+CGG - chr2_2:27435553-27435572 None:intergenic 60.0%
TGGTGTCCGGGTTCGAACCC+CGG + chr2_2:27438240-27438259 Msa0246300:intron 65.0%
CAAGGTCCGGGGTTCGAACC+CGG - chr2_2:27438249-27438268 Msa0246310:intron 65.0%
AGGGGCCGAGGTTCGAACCC+CGG + chr2_2:27435545-27435564 Msa0246300:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 27432716 27438888 27432716 ID=Msa0246300;Name=Msa0246300
chr2_2 mRNA 27432716 27438888 27432716 ID=Msa0246300-mRNA-1;Parent=Msa0246300;Name=Msa0246300-mRNA-1;_AED=0.28;_eAED=0.28;_QI=119|1|1|1|1|1|6|151|371
chr2_2 exon 27432716 27433026 27432716 ID=Msa0246300-mRNA-1:exon:9943;Parent=Msa0246300-mRNA-1
chr2_2 exon 27433125 27433337 27433125 ID=Msa0246300-mRNA-1:exon:9944;Parent=Msa0246300-mRNA-1
chr2_2 exon 27433577 27433644 27433577 ID=Msa0246300-mRNA-1:exon:9945;Parent=Msa0246300-mRNA-1
chr2_2 exon 27436431 27436667 27436431 ID=Msa0246300-mRNA-1:exon:9946;Parent=Msa0246300-mRNA-1
chr2_2 exon 27437874 27438006 27437874 ID=Msa0246300-mRNA-1:exon:9947;Parent=Msa0246300-mRNA-1
chr2_2 exon 27438465 27438888 27438465 ID=Msa0246300-mRNA-1:exon:9948;Parent=Msa0246300-mRNA-1
chr2_2 five_prime_UTR 27432716 27432834 27432716 ID=Msa0246300-mRNA-1:five_prime_utr;Parent=Msa0246300-mRNA-1
chr2_2 CDS 27432835 27433026 27432835 ID=Msa0246300-mRNA-1:cds;Parent=Msa0246300-mRNA-1
chr2_2 CDS 27433125 27433337 27433125 ID=Msa0246300-mRNA-1:cds;Parent=Msa0246300-mRNA-1
chr2_2 CDS 27433577 27433644 27433577 ID=Msa0246300-mRNA-1:cds;Parent=Msa0246300-mRNA-1
chr2_2 CDS 27436431 27436667 27436431 ID=Msa0246300-mRNA-1:cds;Parent=Msa0246300-mRNA-1
chr2_2 CDS 27437874 27438006 27437874 ID=Msa0246300-mRNA-1:cds;Parent=Msa0246300-mRNA-1
chr2_2 CDS 27438465 27438737 27438465 ID=Msa0246300-mRNA-1:cds;Parent=Msa0246300-mRNA-1
chr2_2 three_prime_UTR 27438738 27438888 27438738 ID=Msa0246300-mRNA-1:three_prime_utr;Parent=Msa0246300-mRNA-1
Gene Sequence

>Msa0246300

ATGGCTTCCAATATAACCAATCCTCCTTTCACTCCTGGTAAATTTTGTGTCACACTCACCTCAACCTTGGTTCTAGCAGCTTTAGTTTCTCTTACAGTTCAAGTCTTCTACTTCTCACCCATAGATCCAGTTTTGCTAGAAATACCACCATCTGTATTTTCAATTTCTTCAACAAAAAACAACCAATTACAGAATGTGATTAAACTTGGAGAAGGATTTCTGAAGCAACCAGAAGATGTTTGTGTGGATGAAGATGGTGTCTTGTATACAGCTACAAGAGATGGTTGGATTAAAAGAATGGTTAGAAATGGAAATTGGGAGAATTGGAAGCATATAGATAGCTCTTTTTTGCTTGGAATCACTACATCTAAAGATGGTGGTCTCATTGTCTGTGATACTACCTTGGGTTTGCTCAAGGTTACAGAAGAAGGTTTCAGTGTTATCCTTTCACAAGTGAATGGTTCTCAATTAATGTTTGCAGATGATGTAATAGAAGCATCAGATGGAAATATATACTTCAGTGTTGCTAGTAACAAATTTGGTTTACACGATTGGTATTTGGATATGCTAGAGGCAAGACCTCATGGACAACTTTTAAAGTATAATCCCACGTTAAATGAGACAGTTATTGTCATTGATAATTTGACATTTGCAAATGGTGTTGCACTGTCCAAGGATGAAGATTATGTTGTGGTGTGCGAAACTTGGAAATTTAGGTGTGTGAGGCATTGGCTAAAAGGAATTAACAAAGGCAAAACAGATATCTTCATTGAAAACCTCCCTGGTGGACCTGACAATATCAATCTTGCTCCTGATGGCTCATTTTGGATCGCTTTGGTTCAATTAACTTCTAAAAGGCTGGGGTTTGTGCACACCTCTAAAGTATCCAAGCACTTCTTTGCTTCATTTCCAAGGCTATTTAATCTGATCAATAGTGCAACAAAATCAGCTATGGTGGTAAATGTTGGAACTGATGGCAATATTATCAGAAAATTTGGTGATAATGAAGGGAAGGTGTTTAGTTTTGTAACTTCAGCTGTGGAGTTCGAGGACCATCTTTACCTAGGAAGTCTTAATTCTGACTTTGTTGGAAAATTGCCACTGTCAATTGCATAG

Protein sequence

>Msa0246300

MASNITNPPFTPGKFCVTLTSTLVLAALVSLTVQVFYFSPIDPVLLEIPPSVFSISSTKNNQLQNVIKLGEGFLKQPEDVCVDEDGVLYTATRDGWIKRMVRNGNWENWKHIDSSFLLGITTSKDGGLIVCDTTLGLLKVTEEGFSVILSQVNGSQLMFADDVIEASDGNIYFSVASNKFGLHDWYLDMLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGINKGKTDIFIENLPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSKVSKHFFASFPRLFNLINSATKSAMVVNVGTDGNIIRKFGDNEGKVFSFVTSAVEFEDHLYLGSLNSDFVGKLPLSIA*