AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151120 MtrunA17_Chr1g0159481 100.000 215 0 0 1 215 1 215 4.59e-161 443
Msa0151120 MtrunA17_Chr8g0384311 85.990 207 28 1 7 213 3 208 3.02e-133 372
Msa0151120 MtrunA17_Chr3g0130271 83.092 207 33 2 8 213 3 208 4.69e-126 354
Msa0151120 MtrunA17_Chr7g0265001 67.822 202 64 1 14 214 13 214 3.70e-104 299
Msa0151120 MtrunA17_Chr1g0180291 66.500 200 67 0 14 213 11 210 3.07e-102 294
Msa0151120 MtrunA17_Chr1g0197331 61.682 214 78 2 3 214 1 212 7.49e-92 268
Msa0151120 MtrunA17_Chr7g0250531 50.739 203 94 5 13 214 4 201 6.11e-59 184
Msa0151120 MtrunA17_Chr8g0335471 50.246 203 96 4 13 214 4 202 4.14e-58 182
Msa0151120 MtrunA17_Chr2g0276931 49.261 203 96 5 13 213 5 202 2.55e-57 180
Msa0151120 MtrunA17_Chr4g0055651 48.768 203 98 4 13 214 4 201 3.70e-57 179
Msa0151120 MtrunA17_Chr1g0182321 44.749 219 108 7 3 213 1 214 1.08e-54 174
Msa0151120 MtrunA17_Chr1g0182301 44.292 219 109 7 3 213 1 214 3.54e-54 172
Msa0151120 MtrunA17_Chr1g0212521 45.933 209 100 7 13 213 11 214 3.19e-53 170
Msa0151120 MtrunA17_Chr4g0030911 45.894 207 102 7 13 213 11 213 1.70e-52 168
Msa0151120 MtrunA17_Chr7g0263071 49.438 178 82 5 13 184 11 186 6.72e-52 166
Msa0151120 MtrunA17_Chr2g0327911 43.350 203 112 3 13 213 11 212 2.39e-51 165
Msa0151120 MtrunA17_Chr6g0458081 43.128 211 108 5 14 214 3 211 3.79e-51 164
Msa0151120 MtrunA17_Chr2g0290891 42.925 212 107 6 14 214 3 211 5.27e-49 159
Msa0151120 MtrunA17_Chr6g0482721 49.708 171 83 3 15 184 10 178 1.84e-48 158
Msa0151120 MtrunA17_Chr8g0349681 42.647 204 110 4 16 214 383 584 3.12e-48 166
Msa0151120 MtrunA17_Chr8g0349681 44.134 179 91 4 1 172 153 329 2.71e-42 150
Msa0151120 MtrunA17_Chr8g0349681 44.099 161 87 3 16 175 12 170 1.23e-40 145
Msa0151120 MtrunA17_Chr2g0325091 45.455 209 105 6 13 214 7 213 5.18e-48 156
Msa0151120 MtrunA17_Chr2g0283131 40.553 217 105 6 13 214 9 216 3.90e-47 154
Msa0151120 MtrunA17_Chr4g0046261 40.092 217 106 6 13 214 9 216 9.58e-47 153
Msa0151120 MtrunA17_Chr8g0349711 47.468 158 80 3 16 172 5 160 1.02e-46 153
Msa0151120 MtrunA17_Chr2g0319951 48.214 168 84 3 13 179 9 174 3.01e-46 152
Msa0151120 MtrunA17_Chr8g0346421 46.429 168 87 3 13 179 22 187 5.56e-46 152
Msa0151120 MtrunA17_Chr2g0276941 39.810 211 116 5 13 214 11 219 9.82e-46 151
Msa0151120 MtrunA17_Chr3g0112681 39.524 210 117 5 13 214 8 215 1.19e-45 150
Msa0151120 MtrunA17_Chr4g0040781 42.932 191 95 4 13 191 9 197 1.53e-45 150
Msa0151120 MtrunA17_Chr7g0275991 42.051 195 110 3 13 206 16 208 2.86e-45 150
Msa0151120 MtrunA17_Chr2g0315551 45.833 168 88 3 13 179 9 174 4.10e-45 149
Msa0151120 MtrunA17_Chr7g0234201 42.661 218 92 7 16 214 12 215 4.27e-45 149
Msa0151120 MtrunA17_Chr8g0381841 38.679 212 116 5 14 213 14 223 5.55e-45 149
Msa0151120 MtrunA17_Chr4g0032201 38.278 209 120 5 13 214 8 214 6.72e-45 149
Msa0151120 MtrunA17_Chr3g0123821 37.264 212 120 5 13 213 12 221 1.75e-44 148
Msa0151120 MtrunA17_Chr8g0351861 41.667 216 108 6 15 214 14 227 3.85e-44 147
Msa0151120 MtrunA17_Chr1g0189361 41.026 195 103 4 15 208 12 195 1.55e-43 145
Msa0151120 MtrunA17_Chr8g0392931 47.059 170 87 3 13 181 10 177 1.91e-42 142
Msa0151120 MtrunA17_Chr7g0231131 42.262 168 94 3 13 179 11 176 5.07e-42 141
Msa0151120 MtrunA17_Chr1g0174281 37.209 215 118 7 13 213 11 222 7.49e-41 138
Msa0151120 MtrunA17_Chr7g0214241 42.353 170 95 3 16 184 14 181 1.33e-38 132
Msa0151120 MtrunA17_Chr5g0433561 37.563 197 114 6 19 214 12 200 8.99e-37 127
Msa0151120 MtrunA17_Chr3g0109721 36.041 197 117 6 19 214 12 200 1.54e-35 124
Msa0151120 MtrunA17_Chr1g0199331 40.237 169 96 5 19 185 33 198 2.86e-35 123
Msa0151120 MtrunA17_Chr8g0390561 38.272 162 97 3 19 179 11 170 6.44e-34 120
Msa0151120 MtrunA17_Chr4g0055081 38.994 159 94 3 18 175 10 166 5.31e-33 118
Msa0151120 MtrunA17_Chr8g0382221 37.736 159 96 3 18 175 10 166 3.00e-32 116
Msa0151120 MtrunA17_Chr5g0400131 38.365 159 95 3 18 175 10 166 3.92e-32 115
Msa0151120 MtrunA17_Chr3g0123971 37.278 169 103 3 18 185 10 176 3.99e-32 115
Msa0151120 MtrunA17_Chr4g0034871 36.842 171 100 5 17 180 8 177 5.61e-29 107
Msa0151120 MtrunA17_Chr8g0383261 39.444 180 94 7 1 172 1 173 7.09e-29 107
Msa0151120 MtrunA17_Chr2g0331691 34.653 202 106 6 17 211 10 192 6.64e-28 105
Msa0151120 MtrunA17_Chr4g0004661 33.663 202 108 6 17 211 64 246 7.39e-27 103
Msa0151120 MtrunA17_Chr1g0201121 37.423 163 94 5 17 172 8 169 1.52e-26 101
Msa0151120 MtrunA17_Chr6g0466301 38.650 163 92 6 17 172 8 169 2.13e-26 100
Msa0151120 MtrunA17_Chr6g0465491 38.650 163 92 6 17 172 8 169 2.13e-26 100
Msa0151120 MtrunA17_Chr3g0138121 36.813 182 106 7 7 185 2 177 1.68e-25 99.0
Msa0151120 MtrunA17_Chr3g0138101 36.813 182 106 7 7 185 2 177 1.80e-25 99.0
Msa0151120 MtrunA17_Chr3g0138111 36.813 182 106 7 7 185 2 177 2.21e-25 98.6
Msa0151120 MtrunA17_Chr2g0325101 31.250 176 106 5 17 180 6 178 1.85e-23 93.2
Msa0151120 MtrunA17_Chr3g0117931 29.064 203 126 6 8 198 2 198 5.35e-23 92.0
Msa0151120 MtrunA17_Chr6g0486041 30.726 179 109 5 17 183 6 181 5.58e-23 92.0
Msa0151120 MtrunA17_Chr4g0037021 29.609 179 111 5 17 183 6 181 2.80e-22 90.1
Msa0151120 MtrunA17_Chr8g0371501 31.250 176 106 5 17 180 6 178 3.19e-21 87.0
Msa0151120 MtrunA17_Chr5g0405791 30.682 176 107 5 17 180 6 178 7.54e-21 86.3
Msa0151120 MtrunA17_Chr4g0046211 32.258 124 80 3 17 139 6 126 2.06e-17 75.9
Msa0151120 MtrunA17_Chr6g0466431 36.000 100 53 3 17 115 8 97 2.25e-14 66.6
Msa0151120 MtrunA17_Chr6g0465611 36.000 100 53 3 17 115 8 97 2.25e-14 66.6
Msa0151120 MtrunA17_Chr6g0466161 36.641 131 76 5 48 172 22 151 4.23e-14 68.6
Msa0151120 MtrunA17_Chr6g0465471 36.641 131 76 5 48 172 22 151 4.68e-14 68.2
Msa0151120 MtrunA17_Chr5g0434561 31.034 174 97 9 14 176 16 177 1.71e-12 63.5
Msa0151120 MtrunA17_Chr8g0383221 30.675 163 83 6 19 153 23 183 3.80e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151120 AT1G43890.3 85.354 198 29 0 7 204 3 200 3.62e-126 355
Msa0151120 AT1G43890.1 85.354 198 29 0 7 204 3 200 3.62e-126 355
Msa0151120 AT1G43890.2 85.354 198 29 0 7 204 3 200 3.62e-126 355
Msa0151120 AT5G03530.2 67.308 208 68 0 7 214 3 210 9.09e-110 313
Msa0151120 AT5G03530.1 67.308 208 68 0 7 214 3 210 9.09e-110 313
Msa0151120 AT3G09910.3 63.942 208 69 2 7 214 3 204 1.10e-89 263
Msa0151120 AT3G09910.1 63.942 208 69 2 7 214 3 204 1.10e-89 263
Msa0151120 AT3G09910.2 63.942 208 69 2 7 214 3 204 1.10e-89 263
Msa0151120 AT3G09910.5 66.111 180 58 1 7 183 3 182 5.20e-81 240
Msa0151120 AT3G09910.4 66.111 180 58 1 7 183 3 182 5.20e-81 240
Msa0151120 AT1G02130.1 49.261 203 98 4 13 214 4 202 2.25e-57 180
Msa0151120 AT5G47200.1 48.768 203 98 5 13 214 4 201 1.07e-56 179
Msa0151120 AT4G17530.1 48.768 203 98 5 13 214 4 201 1.65e-56 178
Msa0151120 AT4G35860.1 48.925 186 88 4 14 194 3 186 5.46e-54 172
Msa0151120 AT3G53610.2 46.860 207 100 7 13 213 11 213 1.47e-53 171
Msa0151120 AT3G53610.3 46.860 207 100 7 13 213 11 213 1.47e-53 171
Msa0151120 AT3G53610.1 46.860 207 100 7 13 213 11 213 1.47e-53 171
Msa0151120 AT5G59840.1 46.377 207 101 7 13 213 11 213 2.94e-53 170
Msa0151120 AT5G03520.1 45.000 220 109 6 3 215 1 215 6.85e-53 169
Msa0151120 AT3G09900.1 47.642 212 99 7 12 215 10 217 7.12e-53 169
Msa0151120 AT3G11730.1 45.545 202 107 3 13 213 4 203 2.71e-52 167
Msa0151120 AT3G46060.2 45.894 207 102 7 13 213 11 213 5.69e-52 167
Msa0151120 AT3G46060.3 45.894 207 102 7 13 213 11 213 5.69e-52 167
Msa0151120 AT3G46060.1 45.894 207 102 7 13 213 11 213 5.69e-52 167
Msa0151120 AT4G17160.1 42.647 204 111 4 14 213 3 204 1.70e-50 163
Msa0151120 AT4G39990.1 41.905 210 110 5 15 214 15 222 3.47e-50 163
Msa0151120 AT4G17170.1 49.375 160 78 3 14 172 3 160 2.49e-49 160
Msa0151120 AT2G33870.1 47.024 168 86 3 13 179 9 174 1.30e-47 156
Msa0151120 AT4G18430.1 41.905 210 112 4 13 214 9 216 1.51e-46 153
Msa0151120 AT1G09630.1 40.476 210 115 4 13 214 8 215 1.66e-46 153
Msa0151120 AT5G60860.1 41.014 217 104 6 13 214 9 216 2.35e-46 153
Msa0151120 AT1G18200.1 48.214 168 84 3 13 179 9 174 4.20e-46 152
Msa0151120 AT3G07410.1 42.105 209 110 4 15 214 10 216 4.40e-46 152
Msa0151120 AT1G73640.1 48.214 168 84 3 13 179 9 174 4.75e-46 152
Msa0151120 AT1G28550.1 47.024 168 86 3 13 179 9 174 5.44e-46 152
Msa0151120 AT1G16920.1 47.619 168 85 3 13 179 9 174 6.74e-46 151
Msa0151120 AT5G45750.1 47.024 168 86 3 13 179 9 174 8.45e-46 151
Msa0151120 AT1G06400.1 47.619 168 85 3 13 179 9 174 1.90e-45 150
Msa0151120 AT4G18800.1 42.029 207 113 4 13 214 9 213 4.37e-45 149
Msa0151120 AT2G43130.1 41.262 206 113 5 15 214 10 213 5.78e-45 149
Msa0151120 AT3G15060.1 45.087 173 92 3 13 184 9 179 9.10e-45 149
Msa0151120 AT1G05810.1 45.029 171 91 3 15 184 10 178 1.63e-44 148
Msa0151120 AT5G47520.1 44.444 171 92 3 15 184 12 180 3.61e-44 147
Msa0151120 AT1G05810.2 45.029 171 91 3 15 184 56 224 5.20e-44 148
Msa0151120 AT1G07410.1 38.942 208 119 5 13 214 8 213 5.49e-44 147
Msa0151120 AT5G65270.1 41.176 170 97 3 13 181 13 180 6.62e-44 147
Msa0151120 AT3G46830.1 42.857 168 93 3 13 179 8 173 7.58e-43 144
Msa0151120 AT3G46830.2 42.857 168 93 3 13 179 8 173 7.58e-43 144
Msa0151120 AT3G12160.1 38.095 210 119 5 13 213 11 218 8.17e-43 144
Msa0151120 AT2G31680.1 45.783 166 87 3 15 179 10 173 8.74e-43 144
Msa0151120 AT1G01200.1 44.706 170 90 4 13 180 24 191 1.47e-42 144
Msa0151120 AT5G47960.1 36.792 212 121 6 13 213 11 220 3.81e-42 142
Msa0151120 AT5G59150.1 41.040 173 99 3 13 184 8 178 6.71e-42 141
Msa0151120 AT5G03520.2 42.938 177 90 5 45 215 34 205 4.81e-38 131
Msa0151120 AT4G39890.1 38.251 183 109 3 18 197 10 191 1.35e-37 130
Msa0151120 AT4G35860.2 50.407 123 59 2 58 180 2 122 1.69e-36 126
Msa0151120 AT3G54840.1 39.429 175 99 5 6 175 19 191 2.72e-34 121
Msa0151120 AT4G19640.1 38.889 162 96 3 19 179 12 171 5.36e-34 120
Msa0151120 AT5G45130.1 35.533 197 118 6 19 214 12 200 6.23e-34 120
Msa0151120 AT3G54840.3 40.506 158 90 4 20 175 2 157 8.85e-34 119
Msa0151120 AT5G10260.1 39.623 159 93 3 18 175 10 166 2.06e-33 119
Msa0151120 AT3G54840.2 40.764 157 89 4 19 173 35 189 4.88e-33 118
Msa0151120 AT2G44610.1 38.994 159 94 3 18 175 10 166 1.58e-32 117
Msa0151120 AT5G45130.2 34.872 195 118 6 21 214 22 208 2.83e-32 116
Msa0151120 AT2G22290.1 39.623 159 93 3 18 175 10 166 3.10e-32 116
Msa0151120 AT3G18820.1 39.024 164 92 5 17 173 8 170 3.87e-29 108
Msa0151120 AT5G64990.1 37.821 156 94 3 18 172 8 161 7.19e-29 107
Msa0151120 AT1G52280.1 35.149 202 105 6 17 211 8 190 1.01e-28 107
Msa0151120 AT4G09720.1 39.264 163 91 5 17 172 8 169 2.42e-28 106
Msa0151120 AT1G22740.1 38.037 163 93 5 17 172 8 169 3.88e-28 105
Msa0151120 AT3G16100.1 35.149 202 105 6 17 211 8 190 9.18e-28 104
Msa0151120 AT4G09720.4 38.690 168 90 6 17 172 8 174 1.01e-27 104
Msa0151120 AT1G49300.2 38.037 163 93 5 17 172 8 169 1.20e-27 104
Msa0151120 AT1G49300.1 38.037 163 93 5 17 172 8 169 1.20e-27 104
Msa0151120 AT5G39620.1 37.647 170 98 5 18 180 6 174 2.10e-27 103
Msa0151120 AT2G21880.1 37.805 164 92 6 17 172 9 170 8.08e-27 102
Msa0151120 AT4G09720.3 36.782 174 91 6 17 172 8 180 1.04e-26 102
Msa0151120 AT5G55080.1 39.024 164 92 6 18 179 14 171 2.82e-26 101
Msa0151120 AT5G64990.2 36.196 163 94 4 18 172 8 168 3.90e-26 100
Msa0151120 AT5G59150.2 38.211 123 74 2 57 179 2 122 1.95e-25 97.8
Msa0151120 AT4G19640.2 39.844 128 74 3 19 145 12 137 8.81e-25 95.5
Msa0151120 AT4G19640.3 39.098 133 78 3 19 150 12 142 1.58e-24 96.3
Msa0151120 AT2G44690.1 31.667 180 108 5 17 184 18 194 1.60e-24 96.7
Msa0151120 AT5G20010.1 35.789 190 105 8 7 185 2 185 3.53e-24 95.9
Msa0151120 AT5G55190.1 37.356 174 100 7 9 179 4 171 5.27e-24 95.5
Msa0151120 AT5G20020.1 36.932 176 102 7 7 179 2 171 7.38e-24 95.1
Msa0151120 AT4G35020.1 30.168 179 110 5 17 183 6 181 1.00e-22 91.7
Msa0151120 AT4G35020.2 30.168 179 110 5 17 183 6 181 1.00e-22 91.7
Msa0151120 AT4G35020.3 30.168 179 110 5 17 183 6 181 1.00e-22 91.7
Msa0151120 AT3G51300.1 31.034 174 105 5 19 180 8 178 1.36e-22 91.3
Msa0151120 AT3G48040.1 30.526 190 113 7 8 185 2 184 7.48e-22 89.4
Msa0151120 AT4G28950.1 29.379 177 112 5 17 183 6 179 1.04e-21 89.0
Msa0151120 AT2G17800.2 30.114 176 108 5 17 180 6 178 2.20e-21 87.8
Msa0151120 AT2G17800.1 30.114 176 108 5 17 180 6 178 2.20e-21 87.8
Msa0151120 AT4G09720.6 40.458 131 71 4 48 172 6 135 2.34e-21 87.4
Msa0151120 AT4G09720.5 40.458 131 71 4 48 172 6 135 2.34e-21 87.4
Msa0151120 AT4G09720.2 40.458 131 71 4 48 172 6 135 2.34e-21 87.4
Msa0151120 AT1G20090.1 29.545 176 109 5 17 180 5 177 2.38e-21 87.8
Msa0151120 AT1G75840.1 29.545 176 109 5 17 180 6 178 3.04e-21 87.4
Msa0151120 AT4G35950.1 29.545 176 109 5 17 180 6 178 1.16e-20 85.9
Msa0151120 AT5G62880.1 29.189 185 113 6 8 180 2 180 3.84e-20 85.1
Msa0151120 AT5G45970.1 28.488 172 108 5 17 176 6 174 7.03e-20 84.0
Msa0151120 AT3G48040.2 30.939 181 106 7 8 175 2 176 9.51e-20 83.2
Msa0151120 AT2G21880.4 38.636 132 72 5 48 172 16 145 1.46e-19 82.8
Msa0151120 AT2G21880.3 38.636 132 72 5 48 172 16 145 1.46e-19 82.8
Msa0151120 AT2G21880.2 32.927 164 92 7 17 172 9 162 1.46e-17 78.2
Msa0151120 AT5G62880.2 30.000 170 101 6 8 165 2 165 1.99e-17 77.4
Msa0151120 AT3G51290.2 29.605 152 93 4 40 180 631 779 2.08e-15 74.7
Msa0151120 AT4G35020.4 34.483 116 72 3 19 133 8 120 3.19e-15 70.5
Msa0151120 AT4G35020.5 34.483 116 72 3 19 133 8 120 3.19e-15 70.5
Msa0151120 AT5G46025.1 35.577 104 66 1 78 181 6 108 3.41e-15 69.3
Msa0151120 AT5G37680.1 29.545 176 97 9 14 176 16 177 1.17e-12 64.3
Msa0151120 AT3G49870.2 32.934 167 95 9 18 176 1 158 2.41e-12 63.2
Msa0151120 AT3G49870.1 32.749 171 98 9 14 176 16 177 4.01e-12 62.8
Msa0151120 AT5G67560.1 32.749 171 98 9 14 176 16 177 4.18e-12 62.8
Msa0151120 AT5G64813.1 28.221 163 87 6 19 153 24 184 8.44e-11 60.8
Msa0151120 AT5G64813.3 28.221 163 87 6 19 153 24 184 8.44e-11 60.8
Msa0151120 AT5G64813.2 28.221 163 87 6 19 153 24 184 8.44e-11 60.8
Msa0151120 AT3G22950.1 28.244 131 87 3 18 148 18 141 9.00e-11 59.3
Msa0151120 AT3G22950.2 28.244 131 87 3 18 148 18 141 9.00e-11 59.3

Find 61 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAAATCTATCTGATATA+TGG 0.206669 1_4:+13044053 Msa0151120:CDS
CTTCTTATGATTGGTGATTC+TGG 0.217855 1_4:+13040145 Msa0151120:CDS
AAAAGTTAAAACTTGCTATA+TGG 0.235008 1_4:+13041905 Msa0151120:CDS
ACTGCAGAAGAACCTGAATT+TGG 0.239191 1_4:+13045149 Msa0151120:three_prime_UTR
GAAAGGTTTAGAACACTTAC+TGG 0.298839 1_4:+13042447 Msa0151120:CDS
CTCTTGGCTGAGGGCTCATC+TGG 0.314169 1_4:+13044809 Msa0151120:CDS
AGGTGCACAAGGAATAATTA+TGG 0.331547 1_4:+13042482 Msa0151120:CDS
CGCGAAAGAAAGCCTTCTTT+TGG 0.332652 1_4:-13045243 None:intergenic
ATGCTTTGATGTTCAACATA+TGG 0.333601 1_4:+13045051 Msa0151120:three_prime_UTR
TGAAAGGGCTGTTACCAAAA+AGG 0.345224 1_4:+13044354 Msa0151120:CDS
AATGGATGTTTCTTCTTCTT+CGG 0.349573 1_4:+13040087 Msa0151120:exon
AAAGTTAAAACTTGCTATAT+GGG 0.360234 1_4:+13041906 Msa0151120:CDS
GAAGATCTTTCTCCCACTAT+TGG 0.364166 1_4:+13040214 Msa0151120:CDS
GAATTATAGAATGAATTATA+CGG 0.369993 1_4:-13039991 None:intergenic
GTTGACTTTGCAAGGCAATA+TGG 0.370704 1_4:+13044382 Msa0151120:CDS
TTCAGGTTCTTCTGCAGTGC+AGG 0.377102 1_4:-13045144 None:intergenic
TTGTTCAAGCTTCTTATGAT+TGG 0.383844 1_4:+13040136 Msa0151120:CDS
GACTGCATCAAGATGCTTGT+TGG 0.385964 1_4:+13044109 Msa0151120:CDS
TACAAATCTATCTGATATAT+GGG 0.404262 1_4:+13044054 Msa0151120:CDS
CTTACTGGTTCTTATTATAG+AGG 0.404947 1_4:+13042462 Msa0151120:CDS
TCTAAATAGCTGGTAGTAGA+AGG 0.410689 1_4:+13045292 Msa0151120:three_prime_UTR
TAATGAAACAGAAAGCAAAA+TGG 0.428240 1_4:-13045211 None:intergenic
CCGCAGAAGAAACCAAATTC+AGG 0.436018 1_4:-13045161 None:intergenic
GTTAAATATGTTACACTTGG+TGG 0.437372 1_4:+13041880 Msa0151120:CDS
TTCTTGTTGTGCAGCTGGAC+AGG 0.444913 1_4:+13042425 Msa0151120:intron
AATCGCGGTTTATTCTGAAA+TGG 0.447740 1_4:+13040069 Msa0151120:exon
TACTTTGATGTCTAAATAGC+TGG 0.448586 1_4:+13045282 Msa0151120:three_prime_UTR
TTTGGTTTCTTCTGCGGTTG+TGG 0.453368 1_4:+13045167 Msa0151120:three_prime_UTR
ATGATTGGTGATTCTGGTGT+TGG 0.454677 1_4:+13040151 Msa0151120:CDS
TAGCACTGCATTCAGTATAG+AGG 0.462983 1_4:-13044408 None:intergenic
GGTGCACAAGGAATAATTAT+GGG 0.473429 1_4:+13042483 Msa0151120:CDS
TTTGGATACACCAAGCCTCT+TGG 0.489303 1_4:+13044793 Msa0151120:CDS
TTATTATGTGAACCAAAAGA+AGG 0.497481 1_4:+13045231 Msa0151120:three_prime_UTR
CCTGAATTTGGTTTCTTCTG+CGG 0.498612 1_4:+13045161 Msa0151120:three_prime_UTR
TACACCAAGCCTCTTGGCTG+AGG 0.504548 1_4:+13044799 Msa0151120:CDS
TCAGGTTCTTCTGCAGTGCA+GGG 0.525568 1_4:-13045143 None:intergenic
CACCTAGCAGCTGTTGCTCA+TGG 0.531342 1_4:+13044879 Msa0151120:CDS
GAGCCCTCAGCCAAGAGGCT+TGG 0.532229 1_4:-13044803 None:intergenic
AGGAAGCGGTTGACTTTGCA+AGG 0.533441 1_4:+13044374 Msa0151120:CDS
TGCGGTTGTGGCAAAATAGT+CGG 0.546680 1_4:+13045179 Msa0151120:three_prime_UTR
TATGGAATCTGTCTCTACAT+AGG 0.557012 1_4:+13045069 Msa0151120:three_prime_UTR
AGGTTCTTCTGCAGTGCAGG+GGG 0.564035 1_4:-13045141 None:intergenic
AAAGTTAAATATGTTACACT+TGG 0.573517 1_4:+13041877 Msa0151120:CDS
CACCATGAGCAACAGCTGCT+AGG 0.588474 1_4:-13044881 None:intergenic
CAGGTTCTTCTGCAGTGCAG+GGG 0.596322 1_4:-13045142 None:intergenic
CAGCAACCACATTGTAGACA+AGG 0.597868 1_4:-13045358 None:intergenic
ACACCAAGCCTCTTGGCTGA+GGG 0.602694 1_4:+13044800 Msa0151120:CDS
GGTGATGCATCAGACTCTTG+CGG 0.604993 1_4:-13044860 None:intergenic
TTTGTGGACAAACCAATAGT+GGG 0.616040 1_4:-13040226 None:intergenic
AATTAGCGAAAGAAGACAAG+AGG 0.622096 1_4:+13045335 Msa0151120:three_prime_UTR
GGAATGTGTGATTATCATGA+GGG 0.626146 1_4:-13045119 None:intergenic
GTTGTGCAGCTGGACAGGAA+AGG 0.631383 1_4:+13042430 Msa0151120:intron
AAACTTGCTATATGGGACAC+AGG 0.637147 1_4:+13041913 Msa0151120:CDS
TCTTATTATAGAGGTGCACA+AGG 0.643319 1_4:+13042471 Msa0151120:CDS
GGGAATGTGTGATTATCATG+AGG 0.651181 1_4:-13045120 None:intergenic
CAGATGAGCCCTCAGCCAAG+AGG 0.652984 1_4:-13044808 None:intergenic
TGTTGGAAACAAAGTTGACA+AGG 0.666842 1_4:+13044126 Msa0151120:CDS
GGTTCTTCTGCAGTGCAGGG+GGG 0.668848 1_4:-13045140 None:intergenic
TCGAAGCTTAAACTGAATCG+CGG 0.689908 1_4:+13040054 Msa0151120:five_prime_UTR
AAGAGGCCTTGTCTACAATG+TGG 0.724486 1_4:+13045352 Msa0151120:three_prime_UTR
GAACAAGTAATCGAACTCAG+CGG 0.788131 1_4:-13040119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATATAGTATGATA+GGG + chr1_4:13043117-13043136 Msa0151120:intron 10.0%
!! AAAGATGATAAAATAAAAAA+TGG + chr1_4:13044649-13044668 Msa0151120:intron 10.0%
!! GAATTATAGAATGAATTATA+CGG - chr1_4:13039994-13040013 None:intergenic 15.0%
!! ATTTATGTTTGAATATATTC+AGG + chr1_4:13040468-13040487 Msa0151120:intron 15.0%
!! CTTTAATCTATAAATTGAAT+AGG - chr1_4:13041798-13041817 None:intergenic 15.0%
!! TTGATATTATTAGATCAAAA+CGG - chr1_4:13042117-13042136 None:intergenic 15.0%
!!! TAAGTTTTGAAGATTTATAT+TGG - chr1_4:13042150-13042169 None:intergenic 15.0%
!!! TATGTTTTCTAAAATATACA+CGG - chr1_4:13042226-13042245 None:intergenic 15.0%
!! TATTACCATAATAACATAAA+GGG - chr1_4:13042649-13042668 None:intergenic 15.0%
!! ATATTACCATAATAACATAA+AGG - chr1_4:13042650-13042669 None:intergenic 15.0%
!!! AAATAAAATTGATTAGCTTA+GGG - chr1_4:13042819-13042838 None:intergenic 15.0%
!!! CTTATTTTATATAGTATGAT+AGG + chr1_4:13043116-13043135 Msa0151120:intron 15.0%
!!! ATTTTGATTTTAAAAGAATG+AGG + chr1_4:13043219-13043238 Msa0151120:intron 15.0%
!!! TTTTGATTTTAAAAGAATGA+GGG + chr1_4:13043220-13043239 Msa0151120:intron 15.0%
!! TAATTCTATTACAATAGAAA+AGG - chr1_4:13043767-13043786 None:intergenic 15.0%
!!! TATTAATTTTCATGTTTTTG+AGG - chr1_4:13044506-13044525 None:intergenic 15.0%
!!! GTACTATTCAAATTGATTTT+GGG + chr1_4:13040368-13040387 Msa0151120:intron 20.0%
!! ACAAAGAATTACTAAGAAAA+TGG - chr1_4:13041491-13041510 None:intergenic 20.0%
!! AATTTAAGAAATCAGAATAG+TGG + chr1_4:13041630-13041649 Msa0151120:intron 20.0%
!! TACGTCTATATTAACATTAT+AGG - chr1_4:13041668-13041687 None:intergenic 20.0%
!! ATCTATAAATTGAATAGGTA+GGG - chr1_4:13041793-13041812 None:intergenic 20.0%
!! AATCTATAAATTGAATAGGT+AGG - chr1_4:13041794-13041813 None:intergenic 20.0%
!! AAAGTTAAATATGTTACACT+TGG + chr1_4:13041877-13041896 Msa0151120:CDS 20.0%
!!! AAAAGTTAAAACTTGCTATA+TGG + chr1_4:13041905-13041924 Msa0151120:CDS 20.0%
!!! AAAGTTAAAACTTGCTATAT+GGG + chr1_4:13041906-13041925 Msa0151120:CDS 20.0%
!!! ATGTTATTTTTCATCATTCA+TGG + chr1_4:13041979-13041998 Msa0151120:intron 20.0%
!!! TGTTATTTTTCATCATTCAT+GGG + chr1_4:13041980-13041999 Msa0151120:intron 20.0%
!!! TTTTGAAGATTTATATTGGT+AGG - chr1_4:13042146-13042165 None:intergenic 20.0%
!!! ATGTTTTCTAAAATATACAC+GGG - chr1_4:13042225-13042244 None:intergenic 20.0%
!! TAATTGTACATCATATTCAT+GGG - chr1_4:13042559-13042578 None:intergenic 20.0%
!! TTAATTGTACATCATATTCA+TGG - chr1_4:13042560-13042579 None:intergenic 20.0%
!! TTATTCCCTTTATGTTATTA+TGG + chr1_4:13042641-13042660 Msa0151120:intron 20.0%
!!! ATATTCCCTTTATGTTTTTA+TGG + chr1_4:13042666-13042685 Msa0151120:intron 20.0%
!! CATTACCATAAAAACATAAA+GGG - chr1_4:13042674-13042693 None:intergenic 20.0%
!!! GAAATAAAATTGATTAGCTT+AGG - chr1_4:13042820-13042839 None:intergenic 20.0%
!!! TCAATTTTATTTCGAAATTC+AGG + chr1_4:13042827-13042846 Msa0151120:intron 20.0%
!!! CAATTTTATTTCGAAATTCA+GGG + chr1_4:13042828-13042847 Msa0151120:intron 20.0%
!! TACTCAAACTATATTGTATA+AGG - chr1_4:13043167-13043186 None:intergenic 20.0%
!! AGATATAGTAACATAATACT+TGG - chr1_4:13043420-13043439 None:intergenic 20.0%
!! AAAAAACTAGAAAAACCAAA+AGG - chr1_4:13043567-13043586 None:intergenic 20.0%
!! ATACTGAACCTAAAAAAAAT+AGG + chr1_4:13043798-13043817 Msa0151120:intron 20.0%
!! ATATTAAGTAAAGTAGAACT+AGG + chr1_4:13043832-13043851 Msa0151120:intron 20.0%
!! TATTAAGTAAAGTAGAACTA+GGG + chr1_4:13043833-13043852 Msa0151120:intron 20.0%
!! TTACAAATCTATCTGATATA+TGG + chr1_4:13044053-13044072 Msa0151120:CDS 20.0%
!! TACAAATCTATCTGATATAT+GGG + chr1_4:13044054-13044073 Msa0151120:CDS 20.0%
!! AATAAACTTAACACACAATT+TGG + chr1_4:13044171-13044190 Msa0151120:intron 20.0%
!!! TTTTGCTTATCTCATATTTT+AGG + chr1_4:13044327-13044346 Msa0151120:intron 20.0%
!! AAGAAAAAAATTGTCAAGAA+AGG - chr1_4:13044572-13044591 None:intergenic 20.0%
!!! TGGAAATAATGTTTCAATTT+TGG + chr1_4:13044747-13044766 Msa0151120:intron 20.0%
!!! GGAAATAATGTTTCAATTTT+GGG + chr1_4:13044748-13044767 Msa0151120:intron 20.0%
!!! GACTAACGAAATTAATTTTT+TGG - chr1_4:13044990-13045009 None:intergenic 20.0%
!! TTCCTTTTATTCATGCATTT+TGG + chr1_4:13040281-13040300 Msa0151120:intron 25.0%
! ATCCAAAATGCATGAATAAA+AGG - chr1_4:13040286-13040305 None:intergenic 25.0%
!!! CGTACTATTCAAATTGATTT+TGG + chr1_4:13040367-13040386 Msa0151120:intron 25.0%
!! GATTTTTGTCAATTTGTGTT+TGG + chr1_4:13040501-13040520 Msa0151120:intron 25.0%
! ATTCAAAAATACACTCAAAG+TGG - chr1_4:13040567-13040586 None:intergenic 25.0%
!!! TGATTTTAAGAAGCTAGTAA+AGG + chr1_4:13040757-13040776 Msa0151120:intron 25.0%
! ATTCAAAAATACACTCAAAG+TGG - chr1_4:13040567-13040586 None:intergenic 25.0%
!!! TGATTTTAAGAAGCTAGTAA+AGG + chr1_4:13040757-13040776 Msa0151120:intron 25.0%
! ATGGTAAACTAGCTAAAAAA+AGG - chr1_4:13041526-13041545 None:intergenic 25.0%
! TTACCATTTCATTATCTATC+TGG + chr1_4:13041539-13041558 Msa0151120:intron 25.0%
! AAACAAACGTTATATTGCAT+TGG + chr1_4:13041687-13041706 Msa0151120:intron 25.0%
! AACAAACGTTATATTGCATT+GGG + chr1_4:13041688-13041707 Msa0151120:intron 25.0%
! CATATGACTTCTTAAATGAA+AGG - chr1_4:13041730-13041749 None:intergenic 25.0%
!!! CATATGCTGATTTAGTTTTT+TGG + chr1_4:13041944-13041963 Msa0151120:intron 25.0%
!! ATTCTGTAGTATTTAAGATG+TGG + chr1_4:13042042-13042061 Msa0151120:intron 25.0%
! TACAAAATGGGAAAAAATCA+AGG - chr1_4:13042515-13042534 None:intergenic 25.0%
! CCATTACCATAAAAACATAA+AGG - chr1_4:13042675-13042694 None:intergenic 25.0%
!!! CCTTTATGTTTTTATGGTAA+TGG + chr1_4:13042672-13042691 Msa0151120:intron 25.0%
!!! TTTTGAAATTTGAGAACCAT+TGG + chr1_4:13043082-13043101 Msa0151120:intron 25.0%
!!! TGAAGAAGAGTATTTTACTT+CGG + chr1_4:13043648-13043667 Msa0151120:intron 25.0%
!!! ATTCTCTGCCTATTTTTTTT+AGG - chr1_4:13043809-13043828 None:intergenic 25.0%
! TATAAACCGATAGATAAATG+TGG - chr1_4:13043969-13043988 None:intergenic 25.0%
! TGTAAACTTATCAGTGAATT+TGG + chr1_4:13043990-13044009 Msa0151120:intron 25.0%
! GTAAACTTATCAGTGAATTT+GGG + chr1_4:13043991-13044010 Msa0151120:intron 25.0%
! TCAAAACTTAACACACAATT+TGG - chr1_4:13044281-13044300 None:intergenic 25.0%
!!! ATTGTGTGTTAAGTTTTGAT+CGG + chr1_4:13044282-13044301 Msa0151120:intron 25.0%
!!! TCATATTTTAGGAAAGTGAA+AGG + chr1_4:13044338-13044357 Msa0151120:intron 25.0%
!!! CATATTTTAGGAAAGTGAAA+GGG + chr1_4:13044339-13044358 Msa0151120:intron 25.0%
! TGATAAGTTTCATTACTTGA+AGG - chr1_4:13044620-13044639 None:intergenic 25.0%
!!! TGGTGATTATGATGTTTTTA+AGG + chr1_4:13044899-13044918 Msa0151120:exon 25.0%
! ATTCACATCATACTGAAAAA+TGG - chr1_4:13044937-13044956 None:intergenic 25.0%
!! CATCAAAGCATTAAAAATGT+AGG - chr1_4:13045042-13045061 None:intergenic 25.0%
! TAATGAAACAGAAAGCAAAA+TGG - chr1_4:13045214-13045233 None:intergenic 25.0%
! TTATTATGTGAACCAAAAGA+AGG + chr1_4:13045231-13045250 Msa0151120:three_prime_UTR 25.0%
ATACGGAAAGTTGAAAAAGA+AGG - chr1_4:13039977-13039996 None:intergenic 30.0%
AATGGATGTTTCTTCTTCTT+CGG + chr1_4:13040087-13040106 Msa0151120:exon 30.0%
TTGTTCAAGCTTCTTATGAT+TGG + chr1_4:13040136-13040155 Msa0151120:CDS 30.0%
! TCATGAAAGTGTGAAAACAA+GGG - chr1_4:13040253-13040272 None:intergenic 30.0%
! ATCATGAAAGTGTGAAAACA+AGG - chr1_4:13040254-13040273 None:intergenic 30.0%
!!! TCTGTGTTTTTTCAATGTAG+TGG + chr1_4:13040312-13040331 Msa0151120:intron 30.0%
! ACTAACCAAAACGTGATTTT+AGG + chr1_4:13040634-13040653 Msa0151120:intron 30.0%
! CTAGATTTGGAACTAAATGT+AGG + chr1_4:13040661-13040680 Msa0151120:intron 30.0%
! CCACATTTTTCTTGAAATCA+CGG - chr1_4:13040810-13040829 None:intergenic 30.0%
!! TACCTTTTGTACCTTTTTCA+CGG + chr1_4:13040831-13040850 Msa0151120:intron 30.0%
CAAGATATTGCATGAATGTA+GGG + chr1_4:13040948-13040967 Msa0151120:intron 30.0%
AAGATATTGCATGAATGTAG+GGG + chr1_4:13040949-13040968 Msa0151120:intron 30.0%
ATATATACACAGACATTTGG+TGG - chr1_4:13041004-13041023 None:intergenic 30.0%
! ACTAACCAAAACGTGATTTT+AGG + chr1_4:13040634-13040653 Msa0151120:intron 30.0%
!! AAATCACAATTGTTTTGCCT+CGG - chr1_4:13041208-13041227 None:intergenic 30.0%
! CCACATTTTTCTTGAAATCA+CGG - chr1_4:13040810-13040829 None:intergenic 30.0%
!! TACCTTTTGTACCTTTTTCA+CGG + chr1_4:13040831-13040850 Msa0151120:intron 30.0%
CAAGATATTGCATGAATGTA+GGG + chr1_4:13040948-13040967 Msa0151120:intron 30.0%
AAGATATTGCATGAATGTAG+GGG + chr1_4:13040949-13040968 Msa0151120:intron 30.0%
ACTCCAGATAGATAATGAAA+TGG - chr1_4:13041545-13041564 None:intergenic 30.0%
ACAAACGTTATATTGCATTG+GGG + chr1_4:13041689-13041708 Msa0151120:intron 30.0%
GTTAAATATGTTACACTTGG+TGG + chr1_4:13041880-13041899 Msa0151120:CDS 30.0%
AGTCATGTAACTTTGTAACA+AGG - chr1_4:13042344-13042363 None:intergenic 30.0%
!! CTTACTGGTTCTTATTATAG+AGG + chr1_4:13042462-13042481 Msa0151120:CDS 30.0%
AGGAAACATAGCTACAAAAT+GGG - chr1_4:13042527-13042546 None:intergenic 30.0%
TTTACAAAGCAATGTACAAG+AGG - chr1_4:13042869-13042888 None:intergenic 30.0%
ATGTTCATCCAAAATATCGA+GGG - chr1_4:13042995-13043014 None:intergenic 30.0%
CAAAATTGAATTTGAGCACA+AGG - chr1_4:13043205-13043224 None:intergenic 30.0%
!! GATATCTTAAGTTGAGATGT+TGG - chr1_4:13043249-13043268 None:intergenic 30.0%
CATCTCAACTTAAGATATCA+AGG + chr1_4:13043250-13043269 Msa0151120:intron 30.0%
CAACTTAAGATATCAAGGTT+AGG + chr1_4:13043255-13043274 Msa0151120:intron 30.0%
! CAAAGTATTTGATCACTGTA+TGG - chr1_4:13043292-13043311 None:intergenic 30.0%
CATACAGTGATCAAATACTT+TGG + chr1_4:13043290-13043309 Msa0151120:intron 30.0%
GAAAGCTGAATAGTGAATTT+AGG + chr1_4:13043393-13043412 Msa0151120:intron 30.0%
!! ACATGGATTAAATGACCTTT+TGG + chr1_4:13043549-13043568 Msa0151120:intron 30.0%
ACAAGGAGTTCTTTAAATAG+AGG - chr1_4:13043594-13043613 None:intergenic 30.0%
! AAATAGCATTTTAGGCATCT+AGG - chr1_4:13043893-13043912 None:intergenic 30.0%
! AGTCACTGAAATAGCATTTT+AGG - chr1_4:13043901-13043920 None:intergenic 30.0%
TAGCTACCACATTTATCTAT+CGG + chr1_4:13043960-13043979 Msa0151120:intron 30.0%
! GTACATCTTTTATTCCTTCT+TGG + chr1_4:13044148-13044167 Msa0151120:intron 30.0%
GTGTTAAGTTTATTCCAAGA+AGG - chr1_4:13044165-13044184 None:intergenic 30.0%
! TTACAAAGTTTGTTCCTTCT+TGG + chr1_4:13044206-13044225 Msa0151120:intron 30.0%
!! TTTTCATGTTTTTGAGGACA+TGG - chr1_4:13044500-13044519 None:intergenic 30.0%
! AAATCAGCATTTTCAGAAAG+TGG + chr1_4:13044727-13044746 Msa0151120:intron 30.0%
CAAAATCTGGAAACAACAAA+AGG - chr1_4:13044777-13044796 None:intergenic 30.0%
!!! CTTTTGTTGTTTCCAGATTT+TGG + chr1_4:13044775-13044794 Msa0151120:intron 30.0%
ACATCATACTGAAAAATGGA+GGG - chr1_4:13044933-13044952 None:intergenic 30.0%
ATGCTTTGATGTTCAACATA+TGG + chr1_4:13045051-13045070 Msa0151120:three_prime_UTR 30.0%
TACTTTGATGTCTAAATAGC+TGG + chr1_4:13045282-13045301 Msa0151120:three_prime_UTR 30.0%
! AATCGCGGTTTATTCTGAAA+TGG + chr1_4:13040069-13040088 Msa0151120:exon 35.0%
! CTTCTTATGATTGGTGATTC+TGG + chr1_4:13040145-13040164 Msa0151120:CDS 35.0%
TTTGTGGACAAACCAATAGT+GGG - chr1_4:13040229-13040248 None:intergenic 35.0%
! TTTTGTGGACAAACCAATAG+TGG - chr1_4:13040230-13040249 None:intergenic 35.0%
!! GCTCTAGAATTATTCGTTTG+AGG + chr1_4:13040336-13040355 Msa0151120:intron 35.0%
AAAAATACACTCAAAGTGGC+AGG - chr1_4:13040563-13040582 None:intergenic 35.0%
AGCCAAACTCAATAAGTGTA+TGG + chr1_4:13040592-13040611 Msa0151120:intron 35.0%
GACCATACACTTATTGAGTT+TGG - chr1_4:13040597-13040616 None:intergenic 35.0%
! AACCAAAACGTGATTTTAGG+AGG + chr1_4:13040637-13040656 Msa0151120:intron 35.0%
!! GATTTTAGGAGGTCTAGATT+TGG + chr1_4:13040648-13040667 Msa0151120:intron 35.0%
ATATCCTATAAACTCGCGTT+TGG - chr1_4:13040720-13040739 None:intergenic 35.0%
! AAATCACAATCGTTTTGCCT+CGG - chr1_4:13040743-13040762 None:intergenic 35.0%
CCGTGATTTCAAGAAAAATG+TGG + chr1_4:13040807-13040826 Msa0151120:intron 35.0%
! TTCCGTGAAAAAGGTACAAA+AGG - chr1_4:13040836-13040855 None:intergenic 35.0%
GCAAGATATTGCATGAATGT+AGG + chr1_4:13040947-13040966 Msa0151120:intron 35.0%
AGATATTGCATGAATGTAGG+GGG + chr1_4:13040950-13040969 Msa0151120:intron 35.0%
GGCATATATACACAGACATT+TGG - chr1_4:13041007-13041026 None:intergenic 35.0%
AAAAATACACTCAAAGTGGC+AGG - chr1_4:13040563-13040582 None:intergenic 35.0%
! AACCAAAACGTGATTTTAGG+AGG + chr1_4:13040637-13040656 Msa0151120:intron 35.0%
CTAGACTTGGAACTAAATGT+AGG + chr1_4:13041126-13041145 Msa0151120:intron 35.0%
ATATCCTATAAACTCGCGTT+TGG - chr1_4:13040720-13040739 None:intergenic 35.0%
CCGTGATTTCAAGAAAAATG+TGG + chr1_4:13040807-13040826 Msa0151120:intron 35.0%
! TTCCGTGAAAAAGGTACAAA+AGG - chr1_4:13040836-13040855 None:intergenic 35.0%
GCAAGATATTGCATGAATGT+AGG + chr1_4:13040947-13040966 Msa0151120:intron 35.0%
AGATATTGCATGAATGTAGG+GGG + chr1_4:13040950-13040969 Msa0151120:intron 35.0%
ATTCCACCAAATGTCATTAC+TGG + chr1_4:13041463-13041482 Msa0151120:intron 35.0%
AAGAAGTCATATGAATGCGA+CGG + chr1_4:13041737-13041756 Msa0151120:intron 35.0%
AGAGTCGATGCAAATAAATG+AGG - chr1_4:13041830-13041849 None:intergenic 35.0%
! GACTCTTTTGAACATAATGC+AGG + chr1_4:13041844-13041863 Msa0151120:intron 35.0%
AACTTCTTGTGTATTGAGTG+TGG + chr1_4:13042065-13042084 Msa0151120:intron 35.0%
!! CAGAAATTAGCAGCTTGTTT+TGG + chr1_4:13042300-13042319 Msa0151120:intron 35.0%
TGTAACTTTGTAACAAGGAG+AGG - chr1_4:13042339-13042358 None:intergenic 35.0%
GAAGTCTGTTCAATCATATC+TGG + chr1_4:13042375-13042394 Msa0151120:intron 35.0%
! GAAAGGTTTAGAACACTTAC+TGG + chr1_4:13042447-13042466 Msa0151120:CDS 35.0%
! TCTTATTATAGAGGTGCACA+AGG + chr1_4:13042471-13042490 Msa0151120:CDS 35.0%
AGGTGCACAAGGAATAATTA+TGG + chr1_4:13042482-13042501 Msa0151120:CDS 35.0%
GGTGCACAAGGAATAATTAT+GGG + chr1_4:13042483-13042502 Msa0151120:CDS 35.0%
CAGGAAACATAGCTACAAAA+TGG - chr1_4:13042528-13042547 None:intergenic 35.0%
!! ATGGTAATGGATAGCAAACT+TGG + chr1_4:13042685-13042704 Msa0151120:intron 35.0%
TAATTACCATAGACAGCCTA+AGG + chr1_4:13042793-13042812 Msa0151120:intron 35.0%
ATACTTTCTTGAGGTTGAAG+TGG + chr1_4:13042928-13042947 Msa0151120:intron 35.0%
! GATATATGCCCTCGATATTT+TGG + chr1_4:13042984-13043003 Msa0151120:intron 35.0%
CATGTTCATCCAAAATATCG+AGG - chr1_4:13042996-13043015 None:intergenic 35.0%
!! CTCGATATTTTGGATGAACA+TGG + chr1_4:13042994-13043013 Msa0151120:intron 35.0%
CTTAAGATATCAAGGTTAGG+AGG + chr1_4:13043258-13043277 Msa0151120:intron 35.0%
! ACTTTGGAAGCTTAAACTGT+TGG + chr1_4:13043306-13043325 Msa0151120:intron 35.0%
! GTTGGTGAAGGAACAAAAAA+TGG + chr1_4:13043324-13043343 Msa0151120:intron 35.0%
! CTTGGTTGTTGTTGTTGTTA+TGG - chr1_4:13043503-13043522 None:intergenic 35.0%
!! ACTATGACTGACTAGTTCTA+CGG - chr1_4:13043618-13043637 None:intergenic 35.0%
!!! TTTTTAGGTTCAGTATCGAG+TGG - chr1_4:13043794-13043813 None:intergenic 35.0%
ACTAGGGAAAACATGATTCT+AGG + chr1_4:13043849-13043868 Msa0151120:intron 35.0%
TGTTGGAAACAAAGTTGACA+AGG + chr1_4:13044126-13044145 Msa0151120:CDS 35.0%
! TGTCAACTTTGTTTCCAAGA+AGG - chr1_4:13044223-13044242 None:intergenic 35.0%
TCTTGGAAACAAAGTTGACA+AGG + chr1_4:13044223-13044242 Msa0151120:intron 35.0%
! AAATGTTGAGCAGTGTTTTG+AGG + chr1_4:13044441-13044460 Msa0151120:CDS 35.0%
!! TTTTGAGGAGCTTGTAATGA+AGG + chr1_4:13044456-13044475 Msa0151120:CDS 35.0%
GCAACTAACTAGAAGCAAAT+AGG - chr1_4:13044698-13044717 None:intergenic 35.0%
CACATCATACTGAAAAATGG+AGG - chr1_4:13044934-13044953 None:intergenic 35.0%
TATGGAATCTGTCTCTACAT+AGG + chr1_4:13045069-13045088 Msa0151120:three_prime_UTR 35.0%
GGAATGTGTGATTATCATGA+GGG - chr1_4:13045122-13045141 None:intergenic 35.0%
TCTAAATAGCTGGTAGTAGA+AGG + chr1_4:13045292-13045311 Msa0151120:three_prime_UTR 35.0%
AATTAGCGAAAGAAGACAAG+AGG + chr1_4:13045335-13045354 Msa0151120:three_prime_UTR 35.0%
TCGAAGCTTAAACTGAATCG+CGG + chr1_4:13040054-13040073 Msa0151120:five_prime_UTR 40.0%
GAACAAGTAATCGAACTCAG+CGG - chr1_4:13040122-13040141 None:intergenic 40.0%
! ATGATTGGTGATTCTGGTGT+TGG + chr1_4:13040151-13040170 Msa0151120:CDS 40.0%
GAAGATCTTTCTCCCACTAT+TGG + chr1_4:13040214-13040233 Msa0151120:CDS 40.0%
! GTGTGAAAACAAGGGTTTTG+TGG - chr1_4:13040245-13040264 None:intergenic 40.0%
! GACCTCCTAAAATCACGTTT+TGG - chr1_4:13040642-13040661 None:intergenic 40.0%
TTCACCAAACGCGAGTTTAT+AGG + chr1_4:13040713-13040732 Msa0151120:intron 40.0%
AGGAAGCTTCTGTAGTATTG+TGG + chr1_4:13040777-13040796 Msa0151120:intron 40.0%
CTCAAAAGTTCCCATCTCAA+GGG - chr1_4:13040862-13040881 None:intergenic 40.0%
! CTTGAGATGGGAACTTTTGA+GGG + chr1_4:13040861-13040880 Msa0151120:intron 40.0%
!! GGAACTTTTGAGGGTTCATT+AGG + chr1_4:13040870-13040889 Msa0151120:intron 40.0%
!! ACTTTTGAGGGTTCATTAGG+AGG + chr1_4:13040873-13040892 Msa0151120:intron 40.0%
GTTCATTAGGAGGTTTCGTT+TGG + chr1_4:13040883-13040902 Msa0151120:intron 40.0%
AGCCAAACTCAACAAGTGTA+TGG + chr1_4:13041057-13041076 Msa0151120:intron 40.0%
! GACCATACACTTGTTGAGTT+TGG - chr1_4:13041062-13041081 None:intergenic 40.0%
! GACCTCCTAAAATCACGTTT+TGG - chr1_4:13040642-13040661 None:intergenic 40.0%
!! GATTTTAGGAGGTCTAGACT+TGG + chr1_4:13041113-13041132 Msa0151120:intron 40.0%
TTCACCAAACGCGAGTTTAT+AGG + chr1_4:13040713-13040732 Msa0151120:intron 40.0%
AGGAAGCTTCTGTAGTATTG+TGG + chr1_4:13040777-13040796 Msa0151120:intron 40.0%
CTCAAAAGTTCCCATCTCAA+GGG - chr1_4:13040862-13040881 None:intergenic 40.0%
! CTTGAGATGGGAACTTTTGA+GGG + chr1_4:13040861-13040880 Msa0151120:intron 40.0%
!! GGAACTTTTGAGGGTTCATT+AGG + chr1_4:13040870-13040889 Msa0151120:intron 40.0%
!! ACTTTTGAGGGTTCATTAGG+AGG + chr1_4:13040873-13040892 Msa0151120:intron 40.0%
GTTCATTAGGAGGTTTCGTT+TGG + chr1_4:13040883-13040902 Msa0151120:intron 40.0%
ATGGCTCCAGTAATGACATT+TGG - chr1_4:13041472-13041491 None:intergenic 40.0%
AAGAGCTTCTCTCTCATAGT+GGG + chr1_4:13041597-13041616 Msa0151120:intron 40.0%
!!! TCTCTCTCATAGTGGGTTTT+AGG + chr1_4:13041604-13041623 Msa0151120:intron 40.0%
ACGTTATATTGCATTGGGGA+AGG + chr1_4:13041693-13041712 Msa0151120:intron 40.0%
GGGACGATAAAACAGTATCA+TGG - chr1_4:13041773-13041792 None:intergenic 40.0%
!! AAACTTGCTATATGGGACAC+AGG + chr1_4:13041913-13041932 Msa0151120:CDS 40.0%
ATATTCATGGGATAACGAGC+AGG - chr1_4:13042547-13042566 None:intergenic 40.0%
!! ATTGATTAGCTTAGGGCCTT+AGG - chr1_4:13042812-13042831 None:intergenic 40.0%
TCGATTGCGATACTTTCTTG+AGG + chr1_4:13042919-13042938 Msa0151120:intron 40.0%
! TGAGAACCATTGGAGCATTA+AGG + chr1_4:13043092-13043111 Msa0151120:intron 40.0%
! GAGAACCATTGGAGCATTAA+GGG + chr1_4:13043093-13043112 Msa0151120:intron 40.0%
ATAAGCCCTTAATGCTCCAA+TGG - chr1_4:13043101-13043120 None:intergenic 40.0%
! GAAGCTTAAACTGTTGGTGA+AGG + chr1_4:13043312-13043331 Msa0151120:intron 40.0%
! GGGAAAACATGATTCTAGGA+TGG + chr1_4:13043853-13043872 Msa0151120:intron 40.0%
TGAAAGGGCTGTTACCAAAA+AGG + chr1_4:13044354-13044373 Msa0151120:CDS 40.0%
! AAAGTCAACCGCTTCCTTTT+TGG - chr1_4:13044371-13044390 None:intergenic 40.0%
! GTTGACTTTGCAAGGCAATA+TGG + chr1_4:13044382-13044401 Msa0151120:CDS 40.0%
TAGCACTGCATTCAGTATAG+AGG - chr1_4:13044411-13044430 None:intergenic 40.0%
!! AAACTCAGCTTGCTGAAAGT+TGG + chr1_4:13044529-13044548 Msa0151120:intron 40.0%
AGCAAATAGGTGCTTGGATA+GGG - chr1_4:13044685-13044704 None:intergenic 40.0%
AAGCAAATAGGTGCTTGGAT+AGG - chr1_4:13044686-13044705 None:intergenic 40.0%
ACTAGAAGCAAATAGGTGCT+TGG - chr1_4:13044691-13044710 None:intergenic 40.0%
GGGAATGTGTGATTATCATG+AGG - chr1_4:13045123-13045142 None:intergenic 40.0%
ACTGCAGAAGAACCTGAATT+TGG + chr1_4:13045149-13045168 Msa0151120:three_prime_UTR 40.0%
! CCTGAATTTGGTTTCTTCTG+CGG + chr1_4:13045161-13045180 Msa0151120:three_prime_UTR 40.0%
! AAACTCGCGTTTGGTGAACA+CGG - chr1_4:13040711-13040730 None:intergenic 45.0%
GCGAGTTTATAGGATATCCG+AGG + chr1_4:13040723-13040742 Msa0151120:intron 45.0%
CAAGGGTCTTTCCGTGAAAA+AGG - chr1_4:13040845-13040864 None:intergenic 45.0%
CCTCAAAAGTTCCCATCTCA+AGG - chr1_4:13040863-13040882 None:intergenic 45.0%
! CCTTGAGATGGGAACTTTTG+AGG + chr1_4:13040860-13040879 Msa0151120:intron 45.0%
! AAACTCGCGTTTGGTGAACA+CGG - chr1_4:13040711-13040730 None:intergenic 45.0%
GCGAGTTTATAGGATATCCG+AGG + chr1_4:13040723-13040742 Msa0151120:intron 45.0%
CAAGGGTCTTTCCGTGAAAA+AGG - chr1_4:13040845-13040864 None:intergenic 45.0%
CCTCAAAAGTTCCCATCTCA+AGG - chr1_4:13040863-13040882 None:intergenic 45.0%
! CCTTGAGATGGGAACTTTTG+AGG + chr1_4:13040860-13040879 Msa0151120:intron 45.0%
GCTCCAGTAATGACATTTGG+TGG - chr1_4:13041469-13041488 None:intergenic 45.0%
!! GGAGTGTTGAGTTCGAACAA+AGG + chr1_4:13041560-13041579 Msa0151120:intron 45.0%
GAAGAGCTTCTCTCTCATAG+TGG + chr1_4:13041596-13041615 Msa0151120:intron 45.0%
TATGAATGCGACGGTTTGTG+TGG + chr1_4:13041746-13041765 Msa0151120:intron 45.0%
!! GTGTTTTCTTGTTGTGCAGC+TGG + chr1_4:13042420-13042439 Msa0151120:intron 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG + chr1_4:13043519-13043538 Msa0151120:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG + chr1_4:13043520-13043539 Msa0151120:intron 45.0%
!! CTGACTAGTTCTACGGTACA+AGG - chr1_4:13043611-13043630 None:intergenic 45.0%
GACTGCATCAAGATGCTTGT+TGG + chr1_4:13044109-13044128 Msa0151120:CDS 45.0%
GGCTGTTACCAAAAAGGAAG+CGG + chr1_4:13044360-13044379 Msa0151120:CDS 45.0%
CAAATAGGTGCTTGGATAGG+GGG - chr1_4:13044683-13044702 None:intergenic 45.0%
GCAAATAGGTGCTTGGATAG+GGG - chr1_4:13044684-13044703 None:intergenic 45.0%
!! GGCTTGGTGTATCCAAAATC+TGG - chr1_4:13044790-13044809 None:intergenic 45.0%
TTTGGATACACCAAGCCTCT+TGG + chr1_4:13044793-13044812 Msa0151120:CDS 45.0%
CCGCAGAAGAAACCAAATTC+AGG - chr1_4:13045164-13045183 None:intergenic 45.0%
! TTTGGTTTCTTCTGCGGTTG+TGG + chr1_4:13045167-13045186 Msa0151120:three_prime_UTR 45.0%
TGCGGTTGTGGCAAAATAGT+CGG + chr1_4:13045179-13045198 Msa0151120:three_prime_UTR 45.0%
! CGCGAAAGAAAGCCTTCTTT+TGG - chr1_4:13045246-13045265 None:intergenic 45.0%
! ATGTAGGTGAAGCGCCTGTT+TGG + chr1_4:13040677-13040696 Msa0151120:intron 50.0%
ACACGGATGCAGATCCAAAC+AGG - chr1_4:13040694-13040713 None:intergenic 50.0%
TCACGGAAAGACCCTTGAGA+TGG + chr1_4:13040848-13040867 Msa0151120:intron 50.0%
CACGGAAAGACCCTTGAGAT+GGG + chr1_4:13040849-13040868 Msa0151120:intron 50.0%
! ATGTAGGTGAAGCGCCTGTT+TGG + chr1_4:13040677-13040696 Msa0151120:intron 50.0%
ACACGGATGCAGATCCAAAC+AGG - chr1_4:13040694-13040713 None:intergenic 50.0%
TCACGGAAAGACCCTTGAGA+TGG + chr1_4:13040848-13040867 Msa0151120:intron 50.0%
CACGGAAAGACCCTTGAGAT+GGG + chr1_4:13040849-13040868 Msa0151120:intron 50.0%
! TTCTTGTTGTGCAGCTGGAC+AGG + chr1_4:13042425-13042444 Msa0151120:intron 50.0%
TTAGGGCCTTAGGCTGTCTA+TGG - chr1_4:13042802-13042821 None:intergenic 50.0%
CCACTTAGTGGGAAAAGGCT+TGG - chr1_4:13043521-13043540 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG + chr1_4:13043518-13043537 Msa0151120:intron 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG + chr1_4:13043524-13043543 Msa0151120:intron 50.0%
! AGGAAGCGGTTGACTTTGCA+AGG + chr1_4:13044374-13044393 Msa0151120:CDS 50.0%
GGTGATGCATCAGACTCTTG+CGG - chr1_4:13044863-13044882 None:intergenic 50.0%
TCAGGTTCTTCTGCAGTGCA+GGG - chr1_4:13045146-13045165 None:intergenic 50.0%
! TTCAGGTTCTTCTGCAGTGC+AGG - chr1_4:13045147-13045166 None:intergenic 50.0%
GTTGTGCAGCTGGACAGGAA+AGG + chr1_4:13042430-13042449 Msa0151120:intron 55.0%
CGACCCCACTTAGTGGGAAA+AGG - chr1_4:13043526-13043545 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_4:13043532-13043551 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_4:13043533-13043552 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_4:13043532-13043551 Msa0151120:intron 55.0%
TACACCAAGCCTCTTGGCTG+AGG + chr1_4:13044799-13044818 Msa0151120:CDS 55.0%
ACACCAAGCCTCTTGGCTGA+GGG + chr1_4:13044800-13044819 Msa0151120:CDS 55.0%
CACCTAGCAGCTGTTGCTCA+TGG + chr1_4:13044879-13044898 Msa0151120:CDS 55.0%
CACCATGAGCAACAGCTGCT+AGG - chr1_4:13044884-13044903 None:intergenic 55.0%
AGGTTCTTCTGCAGTGCAGG+GGG - chr1_4:13045144-13045163 None:intergenic 55.0%
CAGGTTCTTCTGCAGTGCAG+GGG - chr1_4:13045145-13045164 None:intergenic 55.0%
CAGATGAGCCCTCAGCCAAG+AGG - chr1_4:13044811-13044830 None:intergenic 60.0%
CTCTTGGCTGAGGGCTCATC+TGG + chr1_4:13044809-13044828 Msa0151120:CDS 60.0%
GGTTCTTCTGCAGTGCAGGG+GGG - chr1_4:13045143-13045162 None:intergenic 60.0%
GAGCCCTCAGCCAAGAGGCT+TGG - chr1_4:13044806-13044825 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 13039951 13045371 13039951 ID=Msa0151120;Name=Msa0151120
chr1_4 mRNA 13039951 13045371 13039951 ID=Msa0151120-mRNA-1;Parent=Msa0151120;Name=Msa0151120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=137|1|1|1|1|1|6|467|215
chr1_4 exon 13039951 13040235 13039951 ID=Msa0151120-mRNA-1:exon:5180;Parent=Msa0151120-mRNA-1
chr1_4 exon 13041866 13041934 13041866 ID=Msa0151120-mRNA-1:exon:5181;Parent=Msa0151120-mRNA-1
chr1_4 exon 13042439 13042504 13042439 ID=Msa0151120-mRNA-1:exon:5182;Parent=Msa0151120-mRNA-1
chr1_4 exon 13044026 13044147 13044026 ID=Msa0151120-mRNA-1:exon:5183;Parent=Msa0151120-mRNA-1
chr1_4 exon 13044349 13044477 13044349 ID=Msa0151120-mRNA-1:exon:5184;Parent=Msa0151120-mRNA-1
chr1_4 exon 13044791 13045371 13044791 ID=Msa0151120-mRNA-1:exon:5185;Parent=Msa0151120-mRNA-1
chr1_4 five_prime_UTR 13039951 13040087 13039951 ID=Msa0151120-mRNA-1:five_prime_utr;Parent=Msa0151120-mRNA-1
chr1_4 CDS 13040088 13040235 13040088 ID=Msa0151120-mRNA-1:cds;Parent=Msa0151120-mRNA-1
chr1_4 CDS 13041866 13041934 13041866 ID=Msa0151120-mRNA-1:cds;Parent=Msa0151120-mRNA-1
chr1_4 CDS 13042439 13042504 13042439 ID=Msa0151120-mRNA-1:cds;Parent=Msa0151120-mRNA-1
chr1_4 CDS 13044026 13044147 13044026 ID=Msa0151120-mRNA-1:cds;Parent=Msa0151120-mRNA-1
chr1_4 CDS 13044349 13044477 13044349 ID=Msa0151120-mRNA-1:cds;Parent=Msa0151120-mRNA-1
chr1_4 CDS 13044791 13044904 13044791 ID=Msa0151120-mRNA-1:cds;Parent=Msa0151120-mRNA-1
chr1_4 three_prime_UTR 13044905 13045371 13044905 ID=Msa0151120-mRNA-1:three_prime_utr;Parent=Msa0151120-mRNA-1
Gene Sequence

>Msa0151120

ATGGATGTTTCTTCTTCTTCGGCGAGTAACGCCGCTGAGTTCGATTACTTGTTCAAGCTTCTTATGATTGGTGATTCTGGTGTTGGCAAAAGCACGTTGCTTCTTCGATTCACTTCTGATAACTTCGAAGATCTTTCTCCCACTATTGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAAAAGTTAAAACTTGCTATATGGGACACAGCTGGACAGGAAAGGTTTAGAACACTTACTGGTTCTTATTATAGAGGTGCACAAGGAATAATTATGGTATATGATGTAACGCGACGTGAAACTTTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGACTGCATCAAGATGCTTGTTGGAAACAAAGTTGACAAGGAAAGTGAAAGGGCTGTTACCAAAAAGGAAGCGGTTGACTTTGCAAGGCAATATGGATGCCTCTATACTGAATGCAGTGCTAAAACTCGAGTAAATGTTGAGCAGTGTTTTGAGGAGCTTGTAATGAAGATTTTGGATACACCAAGCCTCTTGGCTGAGGGCTCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCGCAAGAGTCTGATGCATCACCTAGCAGCTGTTGCTCATGGTGA
Protein sequence

>Msa0151120

MDVSSSSASNAAEFDYLFKLLMIGDSGVGKSTLLLRFTSDNFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERAVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVMKILDTPSLLAEGSSGVKKNIFKQKPQESDASPSSCCSW*