Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165270 | sp|Q9CXF4|TBC15_MOUSE | 37.131 | 237 | 129 | 4 | 47 | 263 | 300 | 536 | 7.15e-39 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165270 | A0A072VKF4 | 86.429 | 420 | 7 | 3 | 1 | 370 | 1 | 420 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014570 | Msa0165270 | 0.812913 | 3.337708e-51 | -8.615850e-47 |
| Msa0030280 | Msa0165270 | 0.806894 | 6.590865e-50 | -8.615850e-47 |
| Msa0032320 | Msa0165270 | 0.801059 | 1.076611e-48 | -8.615850e-47 |
| Msa0057710 | Msa0165270 | 0.810051 | 1.396881e-50 | -8.615850e-47 |
| Msa0077880 | Msa0165270 | 0.801149 | 1.031610e-48 | -8.615850e-47 |
| Msa0110970 | Msa0165270 | 0.801261 | 9.787533e-49 | -8.615850e-47 |
| Msa0115090 | Msa0165270 | 0.807391 | 5.171940e-50 | -8.615850e-47 |
| Msa0130240 | Msa0165270 | 0.806673 | 7.338139e-50 | -8.615850e-47 |
| Msa0138360 | Msa0165270 | 0.804372 | 2.229317e-49 | -8.615850e-47 |
| Msa0144360 | Msa0165270 | 0.829307 | 5.538610e-55 | -8.615850e-47 |
| Msa0152400 | Msa0165270 | 0.801751 | 7.765459e-49 | -8.615850e-47 |
| Msa0154440 | Msa0165270 | 0.803500 | 3.385103e-49 | -8.615850e-47 |
| Msa0165270 | Msa0173890 | 0.801177 | 1.018363e-48 | -8.615850e-47 |
| Msa0165270 | Msa0253290 | 0.812923 | 3.320783e-51 | -8.615850e-47 |
| Msa0165270 | Msa0263080 | 0.812761 | 3.603251e-51 | -8.615850e-47 |
| Msa0165270 | Msa0300270 | 0.808108 | 3.641244e-50 | -8.615850e-47 |
| Msa0165270 | Msa0300320 | 0.810452 | 1.144455e-50 | -8.615850e-47 |
| Msa0165270 | Msa0300690 | 0.817927 | 2.558121e-52 | -8.615850e-47 |
| Msa0165270 | Msa0410500 | 0.807950 | 3.933933e-50 | -8.615850e-47 |
| Msa0165270 | Msa0422850 | 0.811258 | 7.660821e-51 | -8.615850e-47 |
| Msa0165270 | Msa0422930 | 0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa0165270 | Msa0547020 | 0.817486 | 3.216943e-52 | -8.615850e-47 |
| Msa0165270 | Msa0556010 | 0.807013 | 6.217781e-50 | -8.615850e-47 |
| Msa0165270 | Msa0573380 | 0.800968 | 1.123669e-48 | -8.615850e-47 |
| Msa0165270 | Msa0574890 | 0.807464 | 4.991007e-50 | -8.615850e-47 |
| Msa0165270 | Msa0581690 | 0.827744 | 1.320944e-54 | -8.615850e-47 |
| Msa0165270 | Msa0799000 | 0.804389 | 2.211873e-49 | -8.615850e-47 |
| Msa0165270 | Msa0861510 | 0.815574 | 8.622409e-52 | -8.615850e-47 |
| Msa0165270 | Msa0861530 | 0.821323 | 4.291996e-53 | -8.615850e-47 |
| Msa0165270 | Msa0861600 | 0.804452 | 2.146029e-49 | -8.615850e-47 |
| Msa0165270 | Msa0930780 | 0.831206 | 1.903295e-55 | -8.615850e-47 |
| Msa0165270 | Msa1031930 | 0.814043 | 1.883733e-51 | -8.615850e-47 |
| Msa0165270 | Msa1079230 | 0.823331 | 1.466929e-53 | -8.615850e-47 |
| Msa0165270 | Msa1124110 | 0.804767 | 1.844380e-49 | -8.615850e-47 |
| Msa0165270 | Msa1151910 | 0.806089 | 9.743313e-50 | -8.615850e-47 |
| Msa0165270 | Msa1169040 | 0.800437 | 1.441700e-48 | -8.615850e-47 |
| Msa0165270 | Msa1208160 | 0.802630 | 5.120235e-49 | -8.615850e-47 |
| Msa0165270 | Msa1277490 | 0.817727 | 2.838826e-52 | -8.615850e-47 |
| Msa0165270 | Msa1298370 | 0.804395 | 2.205615e-49 | -8.615850e-47 |
| Msa0165270 | Msa1459180 | 0.819371 | 1.202675e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165270 | MtrunA17_Chr1g0183581 | 86.429 | 420 | 7 | 3 | 1 | 370 | 1 | 420 | 0.0 | 723 |
| Msa0165270 | MtrunA17_Chr2g0319591 | 45.103 | 439 | 161 | 6 | 12 | 370 | 1 | 439 | 2.91e-137 | 398 |
| Msa0165270 | MtrunA17_Chr4g0041821 | 47.826 | 437 | 146 | 8 | 12 | 370 | 1 | 433 | 8.26e-132 | 384 |
| Msa0165270 | MtrunA17_Chr4g0064141 | 35.656 | 244 | 136 | 6 | 40 | 263 | 331 | 573 | 9.09e-40 | 149 |
| Msa0165270 | MtrunA17_Chr2g0329651 | 42.177 | 147 | 70 | 1 | 137 | 268 | 375 | 521 | 4.06e-34 | 133 |
| Msa0165270 | MtrunA17_Chr2g0329651 | 35.185 | 108 | 64 | 2 | 26 | 132 | 32 | 134 | 1.85e-11 | 65.5 |
| Msa0165270 | MtrunA17_Chr3g0127461 | 30.049 | 203 | 102 | 3 | 156 | 344 | 338 | 514 | 6.78e-23 | 100 |
| Msa0165270 | MtrunA17_Chr3g0127461 | 39.326 | 89 | 51 | 2 | 45 | 131 | 69 | 156 | 1.21e-13 | 72.0 |
| Msa0165270 | MtrunA17_Chr1g0146661 | 38.211 | 123 | 62 | 1 | 156 | 264 | 383 | 505 | 6.94e-23 | 100 |
| Msa0165270 | MtrunA17_Chr1g0146661 | 48.101 | 79 | 39 | 1 | 47 | 123 | 68 | 146 | 2.69e-17 | 83.6 |
| Msa0165270 | MtrunA17_Chr4g0033831 | 27.692 | 260 | 140 | 9 | 46 | 260 | 123 | 379 | 4.75e-14 | 73.2 |
| Msa0165270 | MtrunA17_Chr3g0121451 | 29.944 | 177 | 78 | 5 | 140 | 282 | 215 | 379 | 1.22e-13 | 72.0 |
| Msa0165270 | MtrunA17_Chr2g0329691 | 26.374 | 273 | 156 | 10 | 30 | 260 | 103 | 372 | 7.93e-13 | 69.3 |
| Msa0165270 | MtrunA17_Chr8g0378291 | 28.049 | 164 | 84 | 5 | 140 | 269 | 226 | 389 | 3.04e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165270 | AT4G28550.1 | 59.145 | 421 | 112 | 4 | 7 | 370 | 2 | 419 | 0.0 | 509 |
| Msa0165270 | AT2G20440.1 | 59.479 | 422 | 109 | 5 | 7 | 370 | 2 | 419 | 3.90e-179 | 504 |
| Msa0165270 | AT2G20440.2 | 59.479 | 422 | 109 | 5 | 7 | 370 | 2 | 419 | 3.90e-179 | 504 |
| Msa0165270 | AT4G27100.2 | 48.724 | 431 | 147 | 6 | 13 | 370 | 1 | 430 | 2.01e-134 | 391 |
| Msa0165270 | AT4G27100.1 | 48.724 | 431 | 147 | 6 | 13 | 370 | 1 | 430 | 2.22e-134 | 391 |
| Msa0165270 | AT2G20440.3 | 60.000 | 310 | 70 | 2 | 7 | 262 | 2 | 311 | 4.85e-132 | 382 |
| Msa0165270 | AT5G54780.1 | 48.104 | 422 | 145 | 7 | 12 | 361 | 1 | 420 | 5.67e-132 | 385 |
| Msa0165270 | AT4G28550.3 | 59.091 | 308 | 72 | 2 | 7 | 260 | 2 | 309 | 6.84e-130 | 376 |
| Msa0165270 | AT4G28550.2 | 58.900 | 309 | 73 | 2 | 7 | 261 | 2 | 310 | 2.48e-129 | 374 |
| Msa0165270 | AT2G20440.4 | 56.026 | 307 | 73 | 5 | 122 | 370 | 1 | 303 | 1.58e-113 | 333 |
| Msa0165270 | AT5G52580.1 | 34.694 | 245 | 137 | 6 | 40 | 263 | 339 | 581 | 9.59e-40 | 149 |
| Msa0165270 | AT5G52580.3 | 34.694 | 245 | 137 | 6 | 40 | 263 | 345 | 587 | 1.27e-39 | 149 |
| Msa0165270 | AT5G52580.2 | 34.874 | 238 | 133 | 5 | 47 | 263 | 362 | 598 | 2.77e-39 | 148 |
| Msa0165270 | AT3G59570.1 | 29.766 | 299 | 144 | 6 | 137 | 370 | 366 | 663 | 7.30e-37 | 142 |
| Msa0165270 | AT3G59570.1 | 41.111 | 90 | 52 | 1 | 44 | 132 | 47 | 136 | 5.07e-15 | 77.0 |
| Msa0165270 | AT2G43490.1 | 40.909 | 154 | 76 | 1 | 139 | 277 | 364 | 517 | 9.60e-35 | 135 |
| Msa0165270 | AT2G43490.1 | 37.405 | 131 | 76 | 3 | 44 | 173 | 47 | 172 | 1.02e-16 | 82.4 |
| Msa0165270 | AT2G43490.7 | 40.909 | 154 | 76 | 1 | 139 | 277 | 364 | 517 | 9.60e-35 | 135 |
| Msa0165270 | AT2G43490.7 | 37.405 | 131 | 76 | 3 | 44 | 173 | 47 | 172 | 1.02e-16 | 82.4 |
| Msa0165270 | AT2G43490.3 | 40.909 | 154 | 76 | 1 | 139 | 277 | 364 | 517 | 9.60e-35 | 135 |
| Msa0165270 | AT2G43490.3 | 37.405 | 131 | 76 | 3 | 44 | 173 | 47 | 172 | 1.02e-16 | 82.4 |
| Msa0165270 | AT2G43490.2 | 40.909 | 154 | 76 | 1 | 139 | 277 | 364 | 517 | 9.60e-35 | 135 |
| Msa0165270 | AT2G43490.2 | 37.405 | 131 | 76 | 3 | 44 | 173 | 47 | 172 | 1.02e-16 | 82.4 |
| Msa0165270 | AT2G43490.4 | 40.909 | 154 | 76 | 1 | 139 | 277 | 364 | 517 | 9.83e-35 | 135 |
| Msa0165270 | AT2G43490.4 | 37.405 | 131 | 76 | 3 | 44 | 173 | 47 | 172 | 1.03e-16 | 82.4 |
| Msa0165270 | AT2G43490.6 | 40.909 | 154 | 76 | 1 | 139 | 277 | 360 | 513 | 9.97e-35 | 135 |
| Msa0165270 | AT2G43490.6 | 37.405 | 131 | 76 | 3 | 44 | 173 | 43 | 168 | 1.03e-16 | 82.4 |
| Msa0165270 | AT2G43490.8 | 40.909 | 154 | 76 | 1 | 139 | 277 | 360 | 513 | 9.97e-35 | 135 |
| Msa0165270 | AT2G43490.8 | 37.405 | 131 | 76 | 3 | 44 | 173 | 43 | 168 | 1.03e-16 | 82.4 |
| Msa0165270 | AT2G43490.5 | 40.909 | 154 | 76 | 1 | 139 | 277 | 364 | 517 | 1.47e-34 | 135 |
| Msa0165270 | AT2G43490.5 | 43.333 | 90 | 50 | 1 | 44 | 132 | 47 | 136 | 8.04e-17 | 82.4 |
| Msa0165270 | AT3G59570.3 | 40.373 | 161 | 80 | 2 | 137 | 282 | 366 | 525 | 5.70e-33 | 130 |
| Msa0165270 | AT3G59570.3 | 41.111 | 90 | 52 | 1 | 44 | 132 | 47 | 136 | 5.40e-15 | 77.0 |
| Msa0165270 | AT3G59570.2 | 40.881 | 159 | 78 | 2 | 139 | 282 | 368 | 525 | 6.19e-33 | 130 |
| Msa0165270 | AT3G59570.2 | 41.111 | 90 | 52 | 1 | 44 | 132 | 47 | 136 | 4.88e-15 | 77.0 |
| Msa0165270 | AT3G49350.1 | 30.097 | 206 | 104 | 3 | 158 | 349 | 330 | 509 | 5.69e-24 | 103 |
| Msa0165270 | AT5G41940.1 | 39.837 | 123 | 60 | 1 | 156 | 264 | 343 | 465 | 9.09e-24 | 103 |
| Msa0165270 | AT5G41940.1 | 43.373 | 83 | 45 | 1 | 42 | 122 | 84 | 166 | 1.06e-15 | 79.0 |
| Msa0165270 | AT5G53570.1 | 38.211 | 123 | 62 | 1 | 156 | 264 | 336 | 458 | 2.56e-23 | 101 |
| Msa0165270 | AT5G53570.1 | 43.750 | 80 | 43 | 1 | 46 | 123 | 95 | 174 | 2.93e-13 | 71.2 |
| Msa0165270 | AT5G53570.2 | 38.211 | 123 | 62 | 1 | 156 | 264 | 363 | 485 | 2.98e-23 | 101 |
| Msa0165270 | AT5G53570.2 | 43.750 | 80 | 43 | 1 | 46 | 123 | 122 | 201 | 2.84e-13 | 71.6 |
| Msa0165270 | AT5G24390.1 | 36.585 | 123 | 64 | 1 | 156 | 264 | 315 | 437 | 1.18e-21 | 96.7 |
| Msa0165270 | AT5G24390.1 | 40.000 | 80 | 46 | 1 | 45 | 122 | 61 | 140 | 5.56e-11 | 64.3 |
| Msa0165270 | AT1G04830.1 | 24.625 | 333 | 151 | 10 | 28 | 262 | 56 | 386 | 3.15e-15 | 77.0 |
| Msa0165270 | AT1G04830.2 | 24.625 | 333 | 151 | 12 | 28 | 262 | 56 | 386 | 1.31e-14 | 75.5 |
| Msa0165270 | AT4G13730.2 | 28.313 | 166 | 85 | 4 | 140 | 271 | 234 | 399 | 1.19e-13 | 72.0 |
| Msa0165270 | AT2G30710.1 | 24.074 | 270 | 137 | 8 | 42 | 260 | 112 | 364 | 1.69e-13 | 72.0 |
| Msa0165270 | AT4G13730.1 | 29.299 | 157 | 77 | 4 | 140 | 262 | 234 | 390 | 2.85e-13 | 71.2 |
| Msa0165270 | AT4G13730.3 | 29.299 | 157 | 77 | 4 | 140 | 262 | 223 | 379 | 3.23e-13 | 70.9 |
Find 102 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGCTTCAATTTCATAAA+AGG | 0.203724 | 1_4:+45699269 | None:intergenic |
| TTGCAGACACTTTGTATCTT+TGG | 0.207166 | 1_4:-45697882 | Msa0165270:CDS |
| ATTAACCCTTCTTCCAAAAT+AGG | 0.218229 | 1_4:-45702728 | Msa0165270:five_prime_UTR |
| TGCAGACACTTTGTATCTTT+GGG | 0.250970 | 1_4:-45697881 | Msa0165270:CDS |
| GGAACATCAGCTTTGCATTC+TGG | 0.283596 | 1_4:+45702203 | None:intergenic |
| GAATAGAATAATCCGCAAAA+TGG | 0.305733 | 1_4:+45702592 | None:intergenic |
| GGTTAAAATCCGCTTATTCT+TGG | 0.310024 | 1_4:+45697521 | None:intergenic |
| GTACTTTCTGTTTCCTCAAC+TGG | 0.311683 | 1_4:-45702497 | Msa0165270:five_prime_UTR |
| ACCAAGGTGATGATGAAGTT+TGG | 0.323604 | 1_4:+45698479 | None:intergenic |
| CGTTCTTCAGATGTACTGTT+TGG | 0.329382 | 1_4:+45700948 | None:intergenic |
| AAGCTAATCAATCAAAACTT+TGG | 0.335623 | 1_4:-45699254 | Msa0165270:CDS |
| TGTTATTTACTGCAGTTGTC+GGG | 0.344456 | 1_4:+45697649 | None:intergenic |
| TCGTACTTAGCAAAGATGTT+TGG | 0.347971 | 1_4:+45697699 | None:intergenic |
| GTATTCTTCAGAATCTTTGC+AGG | 0.350623 | 1_4:-45702474 | Msa0165270:five_prime_UTR |
| TAAAGAAGCATTGAAAATTC+AGG | 0.354516 | 1_4:-45697325 | Msa0165270:CDS |
| GGAATGAAATTACCTTGTTC+AGG | 0.359907 | 1_4:+45697295 | None:intergenic |
| GCTTGGTTGGACAATGATAT+TGG | 0.362000 | 1_4:-45699213 | Msa0165270:CDS |
| AGCTAATCAATCAAAACTTT+GGG | 0.364180 | 1_4:-45699253 | Msa0165270:CDS |
| CATACCTCCCCTTTGATTGA+AGG | 0.365247 | 1_4:+45700996 | None:intergenic |
| GAATGATATTTGCTCACCTT+TGG | 0.371946 | 1_4:-45699086 | Msa0165270:CDS |
| CGTACTTAGCAAAGATGTTT+GGG | 0.372522 | 1_4:+45697700 | None:intergenic |
| AACAAAGTTCTGCAGCAATA+TGG | 0.373710 | 1_4:-45697630 | Msa0165270:CDS |
| CCAAGGTGATGATGAAGTTT+GGG | 0.382258 | 1_4:+45698480 | None:intergenic |
| TTGTTATTTACTGCAGTTGT+CGG | 0.385817 | 1_4:+45697648 | None:intergenic |
| AGAATGAAGCAGATTGCTTT+TGG | 0.392479 | 1_4:-45699051 | Msa0165270:CDS |
| CAATGATTTGAGATTGTGAT+TGG | 0.396543 | 1_4:+45702617 | None:intergenic |
| AGTGTTCTTATGATGCGTTC+TGG | 0.398602 | 1_4:-45702260 | Msa0165270:CDS |
| AATTTCGCAGAGGATTTAGA+TGG | 0.409934 | 1_4:-45697964 | Msa0165270:intron |
| TACCTTTGCGATTTGTGAAA+TGG | 0.421644 | 1_4:+45702517 | None:intergenic |
| ATTGTGAGGAAGAGAGAGAA+GGG | 0.444228 | 1_4:+45702559 | None:intergenic |
| ATTTAATGAAGAAGGTCGTT+TGG | 0.446674 | 1_4:-45701497 | Msa0165270:CDS |
| GCTTTGCATTCTGGTCGAAT+GGG | 0.450111 | 1_4:+45702212 | None:intergenic |
| AGCTTTGCATTCTGGTCGAA+TGG | 0.451360 | 1_4:+45702211 | None:intergenic |
| CTTCAATCAAAGGGGAGGTA+TGG | 0.455332 | 1_4:-45700995 | Msa0165270:CDS |
| GTGTCCATCCTTCAATCAAA+GGG | 0.456060 | 1_4:-45701004 | Msa0165270:CDS |
| AAACTATCTCTTCAGATCTT+GGG | 0.457129 | 1_4:-45697384 | Msa0165270:intron |
| CTTGGTTTAAATCGAGTTGT+TGG | 0.459273 | 1_4:+45702182 | None:intergenic |
| CTTTGCGTTTCGCATGCTGA+TGG | 0.461102 | 1_4:-45697929 | Msa0165270:CDS |
| AAGGTGGAGTAGTTGATGAT+TGG | 0.464304 | 1_4:-45702299 | Msa0165270:exon |
| CTGCAAAAGAAAATTCTCTT+CGG | 0.465835 | 1_4:+45697899 | None:intergenic |
| GCGATTTGTGAAATGGTGAA+TGG | 0.469891 | 1_4:+45702524 | None:intergenic |
| TTTGCAGGATCAGATATAAT+CGG | 0.485153 | 1_4:-45702459 | Msa0165270:intron |
| TTTAACCGAGGCCAAGGGTG+TGG | 0.488018 | 1_4:-45697505 | Msa0165270:CDS |
| AATTCAGCATTTAATGAAGA+AGG | 0.491910 | 1_4:-45701505 | Msa0165270:CDS |
| GACAACATCATCCACACCCT+TGG | 0.493741 | 1_4:+45697494 | None:intergenic |
| TACTTTCTGTTTCCTCAACT+GGG | 0.494450 | 1_4:-45702496 | Msa0165270:five_prime_UTR |
| AGACTTTAAGTGCAAGAAGA+TGG | 0.503037 | 1_4:-45701528 | Msa0165270:CDS |
| TTCAATCAAAGGGGAGGTAT+GGG | 0.503151 | 1_4:-45700994 | Msa0165270:CDS |
| GAGGTATGGGAGTTCTTACT+AGG | 0.509597 | 1_4:-45700981 | Msa0165270:CDS |
| TCTATCGATTTATGCTTGGT+TGG | 0.517744 | 1_4:-45699226 | Msa0165270:CDS |
| TAGATTGTTTCCAGTTGATG+TGG | 0.522281 | 1_4:-45697737 | Msa0165270:intron |
| ATCATCCACACCCTTGGCCT+CGG | 0.523840 | 1_4:+45697500 | None:intergenic |
| TAGTTGATGATTGGTTGTGG+TGG | 0.526635 | 1_4:-45702290 | Msa0165270:exon |
| TTTCCAGTTGATGTGGGGCA+TGG | 0.528620 | 1_4:-45697730 | Msa0165270:intron |
| ATGTTCTATCGATTTATGCT+TGG | 0.530760 | 1_4:-45699230 | Msa0165270:CDS |
| GAGTAGTTGATGATTGGTTG+TGG | 0.533842 | 1_4:-45702293 | Msa0165270:exon |
| CAAAAGATAGTCCCAGTCCT+TGG | 0.534490 | 1_4:-45699741 | Msa0165270:CDS |
| ATAGCAAATAGAAACACTGT+TGG | 0.541783 | 1_4:-45702330 | Msa0165270:five_prime_UTR |
| AACACTGTTGGAATTGAAGA+AGG | 0.542438 | 1_4:-45702318 | Msa0165270:five_prime_UTR |
| ATAGTCCCAGTCCTTGGTAG+TGG | 0.544048 | 1_4:-45699735 | Msa0165270:CDS |
| TTCGCAGAGGATTTAGATGG+TGG | 0.544888 | 1_4:-45697961 | Msa0165270:intron |
| AATTTCCCACTACCAAGGAC+TGG | 0.551856 | 1_4:+45699729 | None:intergenic |
| GATTGTGAGGAAGAGAGAGA+AGG | 0.552109 | 1_4:+45702558 | None:intergenic |
| GGTGTCCATCCTTCAATCAA+AGG | 0.554064 | 1_4:-45701005 | Msa0165270:CDS |
| AATGATATTGGTTACGTGCA+AGG | 0.555790 | 1_4:-45699201 | Msa0165270:intron |
| CACAGAAGAAAATAGTGCAC+TGG | 0.560074 | 1_4:-45697574 | Msa0165270:CDS |
| GTTATTTACTGCAGTTGTCG+GGG | 0.562804 | 1_4:+45697650 | None:intergenic |
| AGATTGTTTCCAGTTGATGT+GGG | 0.569904 | 1_4:-45697736 | Msa0165270:intron |
| TTCTTGAGACCAAGAATAAG+CGG | 0.570669 | 1_4:-45697530 | Msa0165270:CDS |
| CTGGCCATCATCACCGACGA+GGG | 0.583759 | 1_4:+45699695 | None:intergenic |
| CCTCCCCTTTGATTGAAGGA+TGG | 0.584741 | 1_4:+45701000 | None:intergenic |
| TGACCGTGCGATGCGAAGGA+TGG | 0.584801 | 1_4:-45699023 | Msa0165270:intron |
| CCCAAACTTCATCATCACCT+TGG | 0.586296 | 1_4:-45698480 | Msa0165270:intron |
| CACCATTTCACAAATCGCAA+AGG | 0.588538 | 1_4:-45702519 | Msa0165270:five_prime_UTR |
| GCTTTGACCGTGCGATGCGA+AGG | 0.590644 | 1_4:-45699027 | Msa0165270:CDS |
| CAACAACTCGATTTAAACCA+AGG | 0.590717 | 1_4:-45702181 | Msa0165270:CDS |
| CTTTGCATTCTGGTCGAATG+GGG | 0.600210 | 1_4:+45702213 | None:intergenic |
| TAGTCCCAGTCCTTGGTAGT+GGG | 0.603102 | 1_4:-45699734 | Msa0165270:CDS |
| TTCTGAGACGAATACAGCGA+GGG | 0.604305 | 1_4:-45701462 | Msa0165270:CDS |
| TTTCATAAAAGGCAAGTGCT+CGG | 0.605214 | 1_4:+45699280 | None:intergenic |
| CTACCATCCTTCGCATCGCA+CGG | 0.607222 | 1_4:+45699020 | None:intergenic |
| TTCTGAAGAATACCCAGTTG+AGG | 0.613011 | 1_4:+45702484 | None:intergenic |
| GATTGTTTCCAGTTGATGTG+GGG | 0.616381 | 1_4:-45697735 | Msa0165270:intron |
| AACAACTCGATTTAAACCAA+GGG | 0.617507 | 1_4:-45702180 | Msa0165270:intron |
| TAACAAATTTCCCACTACCA+AGG | 0.624907 | 1_4:+45699724 | None:intergenic |
| AGACACTTTGTATCTTTGGG+AGG | 0.625099 | 1_4:-45697878 | Msa0165270:intron |
| TGGCCATCATCACCGACGAG+GGG | 0.627189 | 1_4:+45699696 | None:intergenic |
| ATTTCCCACTACCAAGGACT+GGG | 0.635175 | 1_4:+45699730 | None:intergenic |
| GCTAAGTACGAGGATCCAGA+TGG | 0.638060 | 1_4:-45697687 | Msa0165270:CDS |
| TGTGCAGAAAATGATCGTGA+TGG | 0.639975 | 1_4:-45702357 | Msa0165270:intron |
| ACTGTTGGAATTGAAGAAGG+TGG | 0.640649 | 1_4:-45702315 | Msa0165270:five_prime_UTR |
| GGAATGAGCTCAAGCAACGC+CGG | 0.647980 | 1_4:-45700926 | Msa0165270:CDS |
| CAAACAGTACATCTGAAGAA+CGG | 0.654428 | 1_4:-45700947 | Msa0165270:CDS |
| TTCTCAATAAGAATAACCAA+AGG | 0.664555 | 1_4:+45699070 | None:intergenic |
| CCATCCTTCAATCAAAGGGG+AGG | 0.665030 | 1_4:-45701000 | Msa0165270:CDS |
| TTTGTTACAACACCCCTCGT+CGG | 0.671778 | 1_4:-45699708 | Msa0165270:intron |
| GCTGGCCATCATCACCGACG+AGG | 0.684089 | 1_4:+45699694 | None:intergenic |
| TCTGAGACGAATACAGCGAG+GGG | 0.696888 | 1_4:-45701461 | Msa0165270:intron |
| ATGAGCTCAAGCAACGCCGG+AGG | 0.701330 | 1_4:-45700923 | Msa0165270:intron |
| GTTCTGAGACGAATACAGCG+AGG | 0.713018 | 1_4:-45701463 | Msa0165270:CDS |
| TGTCCATCCTTCAATCAAAG+GGG | 0.719618 | 1_4:-45701003 | Msa0165270:CDS |
| AAACATCTTTGCTAAGTACG+AGG | 0.721179 | 1_4:-45697697 | Msa0165270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGATTTTTTTTTTGT+TGG | - | chr1_4:45696877-45696896 | Msa0165270:intron | 10.0% |
| !!! | AAATTGATTTTTTTTTTGTT+GGG | - | chr1_4:45696878-45696897 | Msa0165270:intron | 10.0% |
| !! | TATATAATAACAATATTTGT+GGG | + | chr1_4:45697619-45697638 | None:intergenic | 10.0% |
| !! | ATATATAATAACAATATTTG+TGG | + | chr1_4:45697620-45697639 | None:intergenic | 10.0% |
| !!! | AAGATAAATTTTAATCAAAA+CGG | + | chr1_4:45697688-45697707 | None:intergenic | 10.0% |
| !!! | AAAACTCAATTATATTTTTT+AGG | - | chr1_4:45699695-45699714 | Msa0165270:intron | 10.0% |
| !! | AAGTAAATTTGTATAAAAAT+GGG | - | chr1_4:45699764-45699783 | Msa0165270:CDS | 10.0% |
| !! | TTTAACATTAAAAAATTGAA+AGG | + | chr1_4:45700104-45700123 | None:intergenic | 10.0% |
| !! | AATTGAAATAAAGAAAATAA+TGG | + | chr1_4:45702717-45702736 | None:intergenic | 10.0% |
| !!! | TATATAAGCTTTTTTCTTAA+CGG | + | chr1_4:45696591-45696610 | None:intergenic | 15.0% |
| !! | TTTCAATTAAATGTTTATGT+AGG | - | chr1_4:45698372-45698391 | Msa0165270:intron | 15.0% |
| !! | ATGATAATAACAAAGAAATA+TGG | - | chr1_4:45699050-45699069 | Msa0165270:CDS | 15.0% |
| !! | ATAAAGATAAAAAAAAAAGG+AGG | + | chr1_4:45699424-45699443 | None:intergenic | 15.0% |
| !! | TTAATGTAAATTATTATCCA+GGG | - | chr1_4:45699474-45699493 | Msa0165270:intron | 15.0% |
| !! | GAAGTAAATTTGTATAAAAA+TGG | - | chr1_4:45699763-45699782 | Msa0165270:CDS | 15.0% |
| !!! | AAAATTAACAACAGATTTTA+AGG | + | chr1_4:45700352-45700371 | None:intergenic | 15.0% |
| !! | AAATAGAAAACAAAGTAAAA+AGG | - | chr1_4:45700583-45700602 | Msa0165270:intron | 15.0% |
| !!! | TTTTTTATTTTATGCCTTTT+TGG | - | chr1_4:45702002-45702021 | Msa0165270:intron | 15.0% |
| !! | CAAACAAAATTGAAAAATTA+AGG | + | chr1_4:45702253-45702272 | None:intergenic | 15.0% |
| !! | CAAACAAAATTGAAAAATTA+AGG | + | chr1_4:45702253-45702272 | None:intergenic | 15.0% |
| !!! | TTTTCATCAATATCCTATTT+TGG | + | chr1_4:45696555-45696574 | None:intergenic | 20.0% |
| !!! | TTTGATATAAAAGTGCATTT+GGG | + | chr1_4:45697131-45697150 | None:intergenic | 20.0% |
| !!! | ATTTGATATAAAAGTGCATT+TGG | + | chr1_4:45697132-45697151 | None:intergenic | 20.0% |
| !! | CAATAGCATACTATTTATTA+GGG | + | chr1_4:45697253-45697272 | None:intergenic | 20.0% |
| !!! | TTTTTTAACTCTTTTTTGGT+AGG | - | chr1_4:45697512-45697531 | Msa0165270:CDS | 20.0% |
| !! | TTTCTTTCTATACATTATGT+AGG | - | chr1_4:45698240-45698259 | Msa0165270:intron | 20.0% |
| !! | TTCTTTCTATACATTATGTA+GGG | - | chr1_4:45698241-45698260 | Msa0165270:intron | 20.0% |
| !! | TTTAATTGAAAATATACCTC+CGG | + | chr1_4:45698363-45698382 | None:intergenic | 20.0% |
| !!! | AGCCTTTTGTAAAATTAATT+GGG | + | chr1_4:45698849-45698868 | None:intergenic | 20.0% |
| !!! | AAGCCTTTTGTAAAATTAAT+TGG | + | chr1_4:45698850-45698869 | None:intergenic | 20.0% |
| !! | TATAACTTATTATCTAACAC+AGG | - | chr1_4:45698869-45698888 | Msa0165270:intron | 20.0% |
| !! | ATAACTTATTATCTAACACA+GGG | - | chr1_4:45698870-45698889 | Msa0165270:intron | 20.0% |
| !!! | CTTGTCTAGAATAAATATAA+GGG | + | chr1_4:45698997-45699016 | None:intergenic | 20.0% |
| !!! | TCTTGTCTAGAATAAATATA+AGG | + | chr1_4:45698998-45699017 | None:intergenic | 20.0% |
| !! | ATATTATGCTCATATTCTTT+GGG | + | chr1_4:45699302-45699321 | None:intergenic | 20.0% |
| !! | AATATTATGCTCATATTCTT+TGG | + | chr1_4:45699303-45699322 | None:intergenic | 20.0% |
| !! | AAAGAATATGAGCATAATAT+TGG | - | chr1_4:45699302-45699321 | Msa0165270:CDS | 20.0% |
| !! | AAGAATATGAGCATAATATT+GGG | - | chr1_4:45699303-45699322 | Msa0165270:CDS | 20.0% |
| !!! | CTTTTACTGATTTTTCTAAT+AGG | - | chr1_4:45699353-45699372 | Msa0165270:intron | 20.0% |
| !! | CTTAATGTAAATTATTATCC+AGG | - | chr1_4:45699473-45699492 | Msa0165270:intron | 20.0% |
| !! | TAATGTAAATTATTATCCAG+GGG | - | chr1_4:45699475-45699494 | Msa0165270:intron | 20.0% |
| !! | CCAAACATAATAAAAAAAAC+AGG | + | chr1_4:45699892-45699911 | None:intergenic | 20.0% |
| !!! | CCTGTTTTTTTTATTATGTT+TGG | - | chr1_4:45699889-45699908 | Msa0165270:intron | 20.0% |
| !!! | AATTGATTATTTTGCATTGT+AGG | - | chr1_4:45699943-45699962 | Msa0165270:intron | 20.0% |
| !!! | ATTAGCTTCAATTTCATAAA+AGG | + | chr1_4:45700001-45700020 | None:intergenic | 20.0% |
| !! | GAAATTTCAGATATTCTTAA+TGG | - | chr1_4:45700138-45700157 | Msa0165270:intron | 20.0% |
| !! | GTGAAAAGAATAAAATATTG+TGG | + | chr1_4:45700541-45700560 | None:intergenic | 20.0% |
| !! | AATGTAGAAAGTAAAAACAA+CGG | + | chr1_4:45700662-45700681 | None:intergenic | 20.0% |
| !!! | TGGTTGAAGTTTTTTTTTTA+AGG | - | chr1_4:45700912-45700931 | Msa0165270:intron | 20.0% |
| !!! | GGTTGAAGTTTTTTTTTTAA+GGG | - | chr1_4:45700913-45700932 | Msa0165270:intron | 20.0% |
| !!! | GTTGAAGTTTTTTTTTTAAG+GGG | - | chr1_4:45700914-45700933 | Msa0165270:intron | 20.0% |
| !!! | TTGAAGTTTTTTTTTTAAGG+GGG | - | chr1_4:45700915-45700934 | Msa0165270:intron | 20.0% |
| !! | AAATTAAAAGAGATAAAGGT+TGG | + | chr1_4:45701288-45701307 | None:intergenic | 20.0% |
| !! | CATAAAATAAAAAATTCAGC+AGG | + | chr1_4:45701996-45702015 | None:intergenic | 20.0% |
| !! | AATTCCCAATTTGTAATTAA+AGG | + | chr1_4:45702061-45702080 | None:intergenic | 20.0% |
| !!! | TGTTTTTCATGTATATGTAA+AGG | - | chr1_4:45702098-45702117 | Msa0165270:intron | 20.0% |
| !!! | AAATTTTCACATATCTAGTA+AGG | + | chr1_4:45702571-45702590 | None:intergenic | 20.0% |
| !!! | AATATCCTATTTTGGAAGAA+GGG | + | chr1_4:45696547-45696566 | None:intergenic | 25.0% |
| !!! | CAATTTTTTCTTTGATGACA+GGG | + | chr1_4:45696864-45696883 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTCTTTGATGAC+AGG | + | chr1_4:45696865-45696884 | None:intergenic | 25.0% |
| ! | ATCCAAAATTGAAATATGTC+CGG | + | chr1_4:45697217-45697236 | None:intergenic | 25.0% |
| ! | GCAATAGCATACTATTTATT+AGG | + | chr1_4:45697254-45697273 | None:intergenic | 25.0% |
| ! | TATTGCATGAATTTATGCTA+AGG | - | chr1_4:45697268-45697287 | Msa0165270:intron | 25.0% |
| !!! | GAGGTTTTTTAACTCTTTTT+TGG | - | chr1_4:45697508-45697527 | Msa0165270:CDS | 25.0% |
| ! | AATTCAGCATTTAATGAAGA+AGG | - | chr1_4:45697762-45697781 | Msa0165270:intron | 25.0% |
| ! | ATAACTACCGTTTAATTGTA+TGG | - | chr1_4:45697922-45697941 | Msa0165270:CDS | 25.0% |
| ! | AGCTATAACATAAGATAAAG+AGG | - | chr1_4:45698401-45698420 | Msa0165270:intron | 25.0% |
| !! | ATGTTTCTGTTCATAGTATA+TGG | - | chr1_4:45698434-45698453 | Msa0165270:intron | 25.0% |
| ! | TTTAGTCTCGTATAATACAA+TGG | + | chr1_4:45698576-45698595 | None:intergenic | 25.0% |
| !! | AGACTAAAAATTTTACCTCT+TGG | - | chr1_4:45698588-45698607 | Msa0165270:intron | 25.0% |
| !! | TAAAAATTTTACCTCTTGGA+TGG | - | chr1_4:45698592-45698611 | Msa0165270:intron | 25.0% |
| ! | TACAAATGCAAAATAGAGAA+TGG | - | chr1_4:45698709-45698728 | Msa0165270:intron | 25.0% |
| ! | ACAAATGCAAAATAGAGAAT+GGG | - | chr1_4:45698710-45698729 | Msa0165270:intron | 25.0% |
| ! | TGTAAAATTAATTGGGCTAA+GGG | + | chr1_4:45698842-45698861 | None:intergenic | 25.0% |
| ! | TTGTAAAATTAATTGGGCTA+AGG | + | chr1_4:45698843-45698862 | None:intergenic | 25.0% |
| !! | AGCCCAATTAATTTTACAAA+AGG | - | chr1_4:45698844-45698863 | Msa0165270:intron | 25.0% |
| ! | AAGACTTTCAATTATGATCA+TGG | - | chr1_4:45698922-45698941 | Msa0165270:intron | 25.0% |
| ! | ATCAGTAAAAGATTATTACG+AGG | + | chr1_4:45699344-45699363 | None:intergenic | 25.0% |
| ! | AAAAAAGGAGGAAAAAACAT+GGG | + | chr1_4:45699412-45699431 | None:intergenic | 25.0% |
| ! | AAAAAAAGGAGGAAAAAACA+TGG | + | chr1_4:45699413-45699432 | None:intergenic | 25.0% |
| ! | AATGTAAATTATTATCCAGG+GGG | - | chr1_4:45699476-45699495 | Msa0165270:intron | 25.0% |
| ! | TTTATTAACCAATGCTCTTA+GGG | + | chr1_4:45699737-45699756 | None:intergenic | 25.0% |
| !! | CAAGACAAATTTTCCTTTTA+TGG | - | chr1_4:45699826-45699845 | Msa0165270:intron | 25.0% |
| ! | AAGCTAATCAATCAAAACTT+TGG | - | chr1_4:45700013-45700032 | Msa0165270:intron | 25.0% |
| ! | AGCTAATCAATCAAAACTTT+GGG | - | chr1_4:45700014-45700033 | Msa0165270:intron | 25.0% |
| !!! | TAATGGATTATTTCATTTGC+AGG | - | chr1_4:45700155-45700174 | Msa0165270:intron | 25.0% |
| ! | TTCTCAATAAGAATAACCAA+AGG | + | chr1_4:45700200-45700219 | None:intergenic | 25.0% |
| ! | AAATGTTTAATCTCCATTTG+AGG | - | chr1_4:45700392-45700411 | Msa0165270:intron | 25.0% |
| ! | AATGTTTAATCTCCATTTGA+GGG | - | chr1_4:45700393-45700412 | Msa0165270:intron | 25.0% |
| !! | CTTCAAAAACATGCTTTAAA+GGG | + | chr1_4:45700496-45700515 | None:intergenic | 25.0% |
| ! | ACTTCAAAAACATGCTTTAA+AGG | + | chr1_4:45700497-45700516 | None:intergenic | 25.0% |
| !!! | ATGTTTTTGAAGTTTTGTGT+AGG | - | chr1_4:45700504-45700523 | Msa0165270:intron | 25.0% |
| ! | TCAGATATTTGCATAAGAAA+CGG | + | chr1_4:45700563-45700582 | None:intergenic | 25.0% |
| ! | TAGAAAACAAAGTAAAAAGG+TGG | - | chr1_4:45700586-45700605 | Msa0165270:intron | 25.0% |
| ! | ATGTAGAAAGTAAAAACAAC+GGG | + | chr1_4:45700661-45700680 | None:intergenic | 25.0% |
| ! | AATCATATATTCATCTTGCA+AGG | - | chr1_4:45701088-45701107 | Msa0165270:intron | 25.0% |
| !!! | TTGCTTTTGATAACAGAAAA+AGG | - | chr1_4:45701111-45701130 | Msa0165270:intron | 25.0% |
| ! | GTATAAATGTAAGTAAGAGT+AGG | - | chr1_4:45701259-45701278 | Msa0165270:intron | 25.0% |
| ! | TGCGAAATTAAAAGAGATAA+AGG | + | chr1_4:45701292-45701311 | None:intergenic | 25.0% |
| !!! | AAATTGTCACTTTTGTTTTG+AGG | - | chr1_4:45701437-45701456 | Msa0165270:intron | 25.0% |
| ! | ATATGCACATGTATAAGTAA+GGG | + | chr1_4:45701821-45701840 | None:intergenic | 25.0% |
| ! | TATATGCACATGTATAAGTA+AGG | + | chr1_4:45701822-45701841 | None:intergenic | 25.0% |
| !!! | TAAAGAAGCATTGAAAATTC+AGG | - | chr1_4:45701942-45701961 | Msa0165270:intron | 25.0% |
| ! | TTTCGCCTTTAATTACAAAT+TGG | - | chr1_4:45702053-45702072 | Msa0165270:intron | 25.0% |
| ! | TTCGCCTTTAATTACAAATT+GGG | - | chr1_4:45702054-45702073 | Msa0165270:intron | 25.0% |
| !! | GTAGAAAAGATTTTCTGTTA+TGG | + | chr1_4:45702382-45702401 | None:intergenic | 25.0% |
| !!! | TTCTGTTTTTGCATAAACAA+AGG | - | chr1_4:45702519-45702538 | Msa0165270:five_prime_UTR | 25.0% |
| ! | ACAGAAAATCTAATGTTGTT+CGG | + | chr1_4:45702632-45702651 | None:intergenic | 25.0% |
| ATTAACCCTTCTTCCAAAAT+AGG | - | chr1_4:45696539-45696558 | Msa0165270:intron | 30.0% | |
| !! | CAATATCCTATTTTGGAAGA+AGG | + | chr1_4:45696548-45696567 | None:intergenic | 30.0% |
| ! | CAATGATTTGAGATTGTGAT+TGG | + | chr1_4:45696653-45696672 | None:intergenic | 30.0% |
| ! | CAAATCATTGTTCCATTTTG+CGG | - | chr1_4:45696663-45696682 | Msa0165270:intron | 30.0% |
| GAATAGAATAATCCGCAAAA+TGG | + | chr1_4:45696678-45696697 | None:intergenic | 30.0% | |
| TTTGCAGGATCAGATATAAT+CGG | - | chr1_4:45696808-45696827 | Msa0165270:intron | 30.0% | |
| TGACAGGGAAAAAATCAAAA+GGG | + | chr1_4:45696849-45696868 | None:intergenic | 30.0% | |
| ATGACAGGGAAAAAATCAAA+AGG | + | chr1_4:45696850-45696869 | None:intergenic | 30.0% | |
| ATAGCAAATAGAAACACTGT+TGG | - | chr1_4:45696937-45696956 | Msa0165270:intron | 30.0% | |
| AACAACTCGATTTAAACCAA+GGG | - | chr1_4:45697087-45697106 | Msa0165270:intron | 30.0% | |
| TCCAAAATTGAAATATGTCC+GGG | + | chr1_4:45697216-45697235 | None:intergenic | 30.0% | |
| CATCAAATAGCAGTTATAGT+GGG | + | chr1_4:45697370-45697389 | None:intergenic | 30.0% | |
| TCATCAAATAGCAGTTATAG+TGG | + | chr1_4:45697371-45697390 | None:intergenic | 30.0% | |
| ACAACATTAGACTAACAAGT+TGG | + | chr1_4:45697571-45697590 | None:intergenic | 30.0% | |
| TTATATATACTTGAGCGAGT+TGG | - | chr1_4:45697632-45697651 | Msa0165270:CDS | 30.0% | |
| ATTTAATGAAGAAGGTCGTT+TGG | - | chr1_4:45697770-45697789 | Msa0165270:intron | 30.0% | |
| ATACAGAAAAACTCACAAAC+AGG | + | chr1_4:45697878-45697897 | None:intergenic | 30.0% | |
| ! | TGAGTTTTTCTGTATGTTTG+TGG | - | chr1_4:45697883-45697902 | Msa0165270:CDS | 30.0% |
| ! | GAGTTTTTCTGTATGTTTGT+GGG | - | chr1_4:45697884-45697903 | Msa0165270:CDS | 30.0% |
| AGAGTCACCATACAATTAAA+CGG | + | chr1_4:45697932-45697951 | None:intergenic | 30.0% | |
| AGAAAAATGTCTGATGCAAA+TGG | + | chr1_4:45697994-45698013 | None:intergenic | 30.0% | |
| ! | GACATTTTTCTATGTGAAAG+AGG | - | chr1_4:45698003-45698022 | Msa0165270:intron | 30.0% |
| AGGAAATAACCACAATGATT+AGG | + | chr1_4:45698514-45698533 | None:intergenic | 30.0% | |
| ACAATCGCAGAAATAGAAAT+AGG | + | chr1_4:45698534-45698553 | None:intergenic | 30.0% | |
| AATTCTCGTGTTGAAGTTAT+AGG | - | chr1_4:45698676-45698695 | Msa0165270:intron | 30.0% | |
| ATTCTCGTGTTGAAGTTATA+GGG | - | chr1_4:45698677-45698696 | Msa0165270:intron | 30.0% | |
| !!! | CTCTTATTTTGACAAGCTAT+TGG | + | chr1_4:45698768-45698787 | None:intergenic | 30.0% |
| ! | CAATAGCTTGTCAAAATAAG+AGG | - | chr1_4:45698766-45698785 | Msa0165270:intron | 30.0% |
| !!! | ATTTGTTTTGCTACTCAACT+AGG | + | chr1_4:45699029-45699048 | None:intergenic | 30.0% |
| ATACAAAATCCCTTCGAAAT+CGG | + | chr1_4:45699125-45699144 | None:intergenic | 30.0% | |
| AGATTATTACGAGGAAACAT+GGG | + | chr1_4:45699335-45699354 | None:intergenic | 30.0% | |
| AAGATTATTACGAGGAAACA+TGG | + | chr1_4:45699336-45699355 | None:intergenic | 30.0% | |
| ! | TGATTTTTCTAATAGGCATC+TGG | - | chr1_4:45699360-45699379 | Msa0165270:intron | 30.0% |
| TTTACCAAAGAAGGATCTAT+TGG | + | chr1_4:45699598-45699617 | None:intergenic | 30.0% | |
| GTCTTAATCTTTACCAAAGA+AGG | + | chr1_4:45699607-45699626 | None:intergenic | 30.0% | |
| GTTTATTAACCAATGCTCTT+AGG | + | chr1_4:45699738-45699757 | None:intergenic | 30.0% | |
| AGCATAATAAGCATCTGTAA+TGG | - | chr1_4:45699919-45699938 | Msa0165270:intron | 30.0% | |
| !! | ATGTTCTATCGATTTATGCT+TGG | - | chr1_4:45700037-45700056 | Msa0165270:intron | 30.0% |
| ! | CTGTTCAGTTTGATAACATT+AGG | - | chr1_4:45700326-45700345 | Msa0165270:intron | 30.0% |
| ! | ATTTTTCCTCCTATCAAACA+AGG | + | chr1_4:45700422-45700441 | None:intergenic | 30.0% |
| TAAACAAGCTTTACATACCA+AGG | + | chr1_4:45700807-45700826 | None:intergenic | 30.0% | |
| ATGCATGAGTAATAGTTTCA+TGG | - | chr1_4:45700840-45700859 | Msa0165270:intron | 30.0% | |
| AAAAAAAAACTTCAACCACG+TGG | + | chr1_4:45700910-45700929 | None:intergenic | 30.0% | |
| ACTAGTTAAAGTGACACTAA+TGG | - | chr1_4:45700946-45700965 | Msa0165270:CDS | 30.0% | |
| ! | TCATTTTACAACCGTTTCTT+AGG | - | chr1_4:45700969-45700988 | Msa0165270:CDS | 30.0% |
| AGTTGAAAACTCCTAAGAAA+CGG | + | chr1_4:45700983-45701002 | None:intergenic | 30.0% | |
| !!! | TATCTCTTTTAATTTCGCAG+AGG | - | chr1_4:45701293-45701312 | Msa0165270:intron | 30.0% |
| CTGCAAAAGAAAATTCTCTT+CGG | + | chr1_4:45701371-45701390 | None:intergenic | 30.0% | |
| GTGACAATTTATGTTGTCAA+AGG | + | chr1_4:45701427-45701446 | None:intergenic | 30.0% | |
| !! | TTGTTATTTACTGCAGTTGT+CGG | + | chr1_4:45701622-45701641 | None:intergenic | 30.0% |
| GAGAGAAAAATTGTAAAGAC+AGG | - | chr1_4:45701667-45701686 | Msa0165270:intron | 30.0% | |
| AAACTATCTCTTCAGATCTT+GGG | - | chr1_4:45701883-45701902 | Msa0165270:intron | 30.0% | |
| !!! | TACATGCTTTTTTAGCATCA+AGG | + | chr1_4:45701924-45701943 | None:intergenic | 30.0% |
| ! | GATTTTCTGTAACGATATGA+TGG | - | chr1_4:45702642-45702661 | Msa0165270:five_prime_UTR | 30.0% |
| ! | GGAAAATTTTGCAGATTGTG+AGG | + | chr1_4:45696725-45696744 | None:intergenic | 35.0% |
| TACCTTTGCGATTTGTGAAA+TGG | + | chr1_4:45696753-45696772 | None:intergenic | 35.0% | |
| TACTTTCTGTTTCCTCAACT+GGG | - | chr1_4:45696771-45696790 | Msa0165270:intron | 35.0% | |
| GTATTCTTCAGAATCTTTGC+AGG | - | chr1_4:45696793-45696812 | Msa0165270:intron | 35.0% | |
| AACACTGTTGGAATTGAAGA+AGG | - | chr1_4:45696949-45696968 | Msa0165270:intron | 35.0% | |
| ! | CTTGGTTTAAATCGAGTTGT+TGG | + | chr1_4:45697088-45697107 | None:intergenic | 35.0% |
| CAACAACTCGATTTAAACCA+AGG | - | chr1_4:45697086-45697105 | Msa0165270:intron | 35.0% | |
| AAAAACAAAAGCTTCACCCT+TGG | + | chr1_4:45697106-45697125 | None:intergenic | 35.0% | |
| ! | TCCCGGACATATTTCAATTT+TGG | - | chr1_4:45697212-45697231 | Msa0165270:intron | 35.0% |
| TCTCCAATTGTGAACTTCAT+TGG | - | chr1_4:45697486-45697505 | Msa0165270:intron | 35.0% | |
| ! | GAAATATGAAGTGTCATAGC+AGG | + | chr1_4:45697538-45697557 | None:intergenic | 35.0% |
| TATACATTATTTCCGCAGTC+TGG | - | chr1_4:45697714-45697733 | Msa0165270:CDS | 35.0% | |
| AGACTTTAAGTGCAAGAAGA+TGG | - | chr1_4:45697739-45697758 | Msa0165270:intron | 35.0% | |
| ATCGTTTATCATTGCATTGC+TGG | - | chr1_4:45697852-45697871 | Msa0165270:intron | 35.0% | |
| AAAACACACAGCACATCAAA+TGG | + | chr1_4:45698054-45698073 | None:intergenic | 35.0% | |
| CAAACAGTACATCTGAAGAA+CGG | - | chr1_4:45698320-45698339 | Msa0165270:intron | 35.0% | |
| TGATTAGGACAAAAAGGCAA+TGG | + | chr1_4:45698499-45698518 | None:intergenic | 35.0% | |
| CCACAATGATTAGGACAAAA+AGG | + | chr1_4:45698505-45698524 | None:intergenic | 35.0% | |
| ! | CCTTTTTGTCCTAATCATTG+TGG | - | chr1_4:45698502-45698521 | Msa0165270:CDS | 35.0% |
| CATAAACTTGATAGGAAGCA+TGG | + | chr1_4:45698618-45698637 | None:intergenic | 35.0% | |
| CTTCCTATCAAGTTTATGCT+TGG | - | chr1_4:45698620-45698639 | Msa0165270:intron | 35.0% | |
| TAATTGGGCTAAGGGATTAT+GGG | + | chr1_4:45698834-45698853 | None:intergenic | 35.0% | |
| TTAATTGGGCTAAGGGATTA+TGG | + | chr1_4:45698835-45698854 | None:intergenic | 35.0% | |
| AGAAACTAATCCGATTTCGA+AGG | - | chr1_4:45699112-45699131 | Msa0165270:intron | 35.0% | |
| GAAACTAATCCGATTTCGAA+GGG | - | chr1_4:45699113-45699132 | Msa0165270:intron | 35.0% | |
| ! | GAAGGGATTTTGTATAGTTC+AGG | - | chr1_4:45699130-45699149 | Msa0165270:intron | 35.0% |
| !!! | TGGGTTTTTAGGATTCTGAT+CGG | - | chr1_4:45699202-45699221 | Msa0165270:CDS | 35.0% |
| GATCGGGAATTTAACAACAA+CGG | - | chr1_4:45699219-45699238 | Msa0165270:CDS | 35.0% | |
| ! | TTTTTCTAATAGGCATCTGG+TGG | - | chr1_4:45699363-45699382 | Msa0165270:intron | 35.0% |
| ! | TTTTCTAATAGGCATCTGGT+GGG | - | chr1_4:45699364-45699383 | Msa0165270:intron | 35.0% |
| !!! | TCTGGTGGGACAAATTTTTT+AGG | - | chr1_4:45699378-45699397 | Msa0165270:intron | 35.0% |
| !!! | CTGGTGGGACAAATTTTTTA+GGG | - | chr1_4:45699379-45699398 | Msa0165270:intron | 35.0% |
| TAACAAATTTCCCACTACCA+AGG | + | chr1_4:45699546-45699565 | None:intergenic | 35.0% | |
| CTGCAGTTATTACATCAGAT+TGG | - | chr1_4:45699652-45699671 | Msa0165270:intron | 35.0% | |
| TCGGTTAAGGATTCCATAAA+AGG | + | chr1_4:45699842-45699861 | None:intergenic | 35.0% | |
| TTTGTTAACGAGTGCCTTAA+GGG | + | chr1_4:45699867-45699886 | None:intergenic | 35.0% | |
| ! | TTTTGTTAACGAGTGCCTTA+AGG | + | chr1_4:45699868-45699887 | None:intergenic | 35.0% |
| TTTCATAAAAGGCAAGTGCT+CGG | + | chr1_4:45699990-45700009 | None:intergenic | 35.0% | |
| !! | TCTATCGATTTATGCTTGGT+TGG | - | chr1_4:45700041-45700060 | Msa0165270:intron | 35.0% |
| ! | AATGATATTGGTTACGTGCA+AGG | - | chr1_4:45700066-45700085 | Msa0165270:intron | 35.0% |
| GAATGATATTTGCTCACCTT+TGG | - | chr1_4:45700181-45700200 | Msa0165270:intron | 35.0% | |
| ! | AGAATGAAGCAGATTGCTTT+TGG | - | chr1_4:45700216-45700235 | Msa0165270:intron | 35.0% |
| CAAAGTGGCATGCTAATTAA+AGG | + | chr1_4:45700469-45700488 | None:intergenic | 35.0% | |
| !! | GCTTTAAAGGGAAAACAAAG+TGG | + | chr1_4:45700484-45700503 | None:intergenic | 35.0% |
| !! | GGTCTATTTGGTTTGAGAAA+AGG | + | chr1_4:45700640-45700659 | None:intergenic | 35.0% |
| GTAAAAACAACGGGTCTATT+TGG | + | chr1_4:45700652-45700671 | None:intergenic | 35.0% | |
| TGAAGTTCTCTCTCTGTTAT+GGG | + | chr1_4:45700696-45700715 | None:intergenic | 35.0% | |
| ATAACAGAGAGAGAACTTCA+GGG | - | chr1_4:45700696-45700715 | Msa0165270:intron | 35.0% | |
| AGTTGACATTGTAACCTCAA+GGG | + | chr1_4:45701010-45701029 | None:intergenic | 35.0% | |
| TAGTTTCCGTAAACTTCCAT+GGG | + | chr1_4:45701053-45701072 | None:intergenic | 35.0% | |
| AGTTGTTGTCTGTAGTTGTT+TGG | - | chr1_4:45701161-45701180 | Msa0165270:intron | 35.0% | |
| GTTGTTGTCTGTAGTTGTTT+GGG | - | chr1_4:45701162-45701181 | Msa0165270:intron | 35.0% | |
| TTGTTGTCTGTAGTTGTTTG+GGG | - | chr1_4:45701163-45701182 | Msa0165270:intron | 35.0% | |
| AGGTAATGTCTCCCAATTAA+GGG | + | chr1_4:45701195-45701214 | None:intergenic | 35.0% | |
| ! | ACCTTGTTTCAAATCTGTCT+CGG | - | chr1_4:45701218-45701237 | Msa0165270:intron | 35.0% |
| AATTTCGCAGAGGATTTAGA+TGG | - | chr1_4:45701303-45701322 | Msa0165270:intron | 35.0% | |
| TTGCAGACACTTTGTATCTT+TGG | - | chr1_4:45701385-45701404 | Msa0165270:intron | 35.0% | |
| TGCAGACACTTTGTATCTTT+GGG | - | chr1_4:45701386-45701405 | Msa0165270:intron | 35.0% | |
| ! | TAGATTGTTTCCAGTTGATG+TGG | - | chr1_4:45701530-45701549 | Msa0165270:CDS | 35.0% |
| ! | AGATTGTTTCCAGTTGATGT+GGG | - | chr1_4:45701531-45701550 | Msa0165270:CDS | 35.0% |
| CGTACTTAGCAAAGATGTTT+GGG | + | chr1_4:45701570-45701589 | None:intergenic | 35.0% | |
| TCGTACTTAGCAAAGATGTT+TGG | + | chr1_4:45701571-45701590 | None:intergenic | 35.0% | |
| AAACATCTTTGCTAAGTACG+AGG | - | chr1_4:45701570-45701589 | Msa0165270:intron | 35.0% | |
| ! | TGTTATTTACTGCAGTTGTC+GGG | + | chr1_4:45701621-45701640 | None:intergenic | 35.0% |
| AACAAAGTTCTGCAGCAATA+TGG | - | chr1_4:45701637-45701656 | Msa0165270:intron | 35.0% | |
| TTCTTGAGACCAAGAATAAG+CGG | - | chr1_4:45701737-45701756 | Msa0165270:intron | 35.0% | |
| GGTTAAAATCCGCTTATTCT+TGG | + | chr1_4:45701749-45701768 | None:intergenic | 35.0% | |
| GAAACTATCTCTTCAGATCT+TGG | - | chr1_4:45701882-45701901 | Msa0165270:intron | 35.0% | |
| !!! | TTTTTTAGCATCAAGGCTTG+AGG | + | chr1_4:45701917-45701936 | None:intergenic | 35.0% |
| TCAGGAAAAATACCTGAACA+AGG | - | chr1_4:45701960-45701979 | Msa0165270:intron | 35.0% | |
| GGAATGAAATTACCTTGTTC+AGG | + | chr1_4:45701975-45701994 | None:intergenic | 35.0% | |
| CAATCAAACTGACACCAAAA+AGG | + | chr1_4:45702019-45702038 | None:intergenic | 35.0% | |
| !!! | CTTTTTGGTGTCAGTTTGAT+TGG | - | chr1_4:45702017-45702036 | Msa0165270:intron | 35.0% |
| AATCTAATGTTGTTCGGTCA+TGG | + | chr1_4:45702626-45702645 | None:intergenic | 35.0% | |
| AAAGAAAATAATGGCCAGTC+AGG | + | chr1_4:45702708-45702727 | None:intergenic | 35.0% | |
| ATTGTGAGGAAGAGAGAGAA+GGG | + | chr1_4:45696711-45696730 | None:intergenic | 40.0% | |
| GCGATTTGTGAAATGGTGAA+TGG | + | chr1_4:45696746-45696765 | None:intergenic | 40.0% | |
| CACCATTTCACAAATCGCAA+AGG | - | chr1_4:45696748-45696767 | Msa0165270:intron | 40.0% | |
| GTACTTTCTGTTTCCTCAAC+TGG | - | chr1_4:45696770-45696789 | Msa0165270:intron | 40.0% | |
| ! | TTCTGAAGAATACCCAGTTG+AGG | + | chr1_4:45696786-45696805 | None:intergenic | 40.0% |
| TGTGCAGAAAATGATCGTGA+TGG | - | chr1_4:45696910-45696929 | Msa0165270:intron | 40.0% | |
| ACTGTTGGAATTGAAGAAGG+TGG | - | chr1_4:45696952-45696971 | Msa0165270:intron | 40.0% | |
| !! | AAGGTGGAGTAGTTGATGAT+TGG | - | chr1_4:45696968-45696987 | Msa0165270:intron | 40.0% |
| !! | GAGTAGTTGATGATTGGTTG+TGG | - | chr1_4:45696974-45696993 | Msa0165270:intron | 40.0% |
| !! | TAGTTGATGATTGGTTGTGG+TGG | - | chr1_4:45696977-45696996 | Msa0165270:intron | 40.0% |
| AGTGTTCTTATGATGCGTTC+TGG | - | chr1_4:45697007-45697026 | Msa0165270:intron | 40.0% | |
| !! | ACCCTCTAAGGTGAATAAGT+GGG | - | chr1_4:45697173-45697192 | Msa0165270:intron | 40.0% |
| TCCCACTTATTCACCTTAGA+GGG | + | chr1_4:45697177-45697196 | None:intergenic | 40.0% | |
| TTCCCACTTATTCACCTTAG+AGG | + | chr1_4:45697178-45697197 | None:intergenic | 40.0% | |
| AACCAGCCATTTGACAACAT+TGG | - | chr1_4:45697454-45697473 | Msa0165270:intron | 40.0% | |
| TCACAGCCAATGTTGTCAAA+TGG | + | chr1_4:45697463-45697482 | None:intergenic | 40.0% | |
| CCTCCAATGAAGTTCACAAT+TGG | + | chr1_4:45697492-45697511 | None:intergenic | 40.0% | |
| CCAATTGTGAACTTCATTGG+AGG | - | chr1_4:45697489-45697508 | Msa0165270:intron | 40.0% | |
| ! | TATATACTTGAGCGAGTTGG+TGG | - | chr1_4:45697635-45697654 | Msa0165270:CDS | 40.0% |
| GTCTGATGCAAATGGAAGTT+GGG | + | chr1_4:45697986-45698005 | None:intergenic | 40.0% | |
| TGTCTGATGCAAATGGAAGT+TGG | + | chr1_4:45697987-45698006 | None:intergenic | 40.0% | |
| CAGCATAAGCACAAATCAGA+AGG | + | chr1_4:45698218-45698237 | None:intergenic | 40.0% | |
| GTGTCCATCCTTCAATCAAA+GGG | - | chr1_4:45698263-45698282 | Msa0165270:intron | 40.0% | |
| TGTCCATCCTTCAATCAAAG+GGG | - | chr1_4:45698264-45698283 | Msa0165270:intron | 40.0% | |
| ! | TTCAATCAAAGGGGAGGTAT+GGG | - | chr1_4:45698273-45698292 | Msa0165270:intron | 40.0% |
| CGTTCTTCAGATGTACTGTT+TGG | + | chr1_4:45698322-45698341 | None:intergenic | 40.0% | |
| GCACCAAGCATAAACTTGAT+AGG | + | chr1_4:45698626-45698645 | None:intergenic | 40.0% | |
| !! | GCTTGGTGCTTCATAGTATA+TGG | - | chr1_4:45698637-45698656 | Msa0165270:intron | 40.0% |
| GAGAATGGGAACAACAATGT+AGG | - | chr1_4:45698724-45698743 | Msa0165270:intron | 40.0% | |
| ACACAGGGTTTCAGATAAAG+AGG | - | chr1_4:45698885-45698904 | Msa0165270:intron | 40.0% | |
| CACAGGGTTTCAGATAAAGA+GGG | - | chr1_4:45698886-45698905 | Msa0165270:intron | 40.0% | |
| ATTCTACTCACGATCCAGAT+CGG | - | chr1_4:45699153-45699172 | Msa0165270:intron | 40.0% | |
| AGAGCAAAATCGCAAAATCG+TGG | - | chr1_4:45699182-45699201 | Msa0165270:intron | 40.0% | |
| GAGCAAAATCGCAAAATCGT+GGG | - | chr1_4:45699183-45699202 | Msa0165270:intron | 40.0% | |
| ! | TCGCAAAATCGTGGGTTTTT+AGG | - | chr1_4:45699191-45699210 | Msa0165270:intron | 40.0% |
| !!! | GGGTTTTTAGGATTCTGATC+GGG | - | chr1_4:45699203-45699222 | Msa0165270:CDS | 40.0% |
| CAGATAAGAAAGTTGTGCAG+TGG | - | chr1_4:45699629-45699648 | Msa0165270:intron | 40.0% | |
| !! | TTTTTAGGAGAACGCCAATG+AGG | - | chr1_4:45699710-45699729 | Msa0165270:CDS | 40.0% |
| !! | TTTTAGGAGAACGCCAATGA+GGG | - | chr1_4:45699711-45699730 | Msa0165270:CDS | 40.0% |
| GCTTGGTTGGACAATGATAT+TGG | - | chr1_4:45700054-45700073 | Msa0165270:intron | 40.0% | |
| GTTTAATCTCCATTTGAGGG+AGG | - | chr1_4:45700396-45700415 | Msa0165270:intron | 40.0% | |
| CTGAAGTTCTCTCTCTGTTA+TGG | + | chr1_4:45700697-45700716 | None:intergenic | 40.0% | |
| CATAACAGAGAGAGAACTTC+AGG | - | chr1_4:45700695-45700714 | Msa0165270:intron | 40.0% | |
| ! | CCAAGGTGATGATGAAGTTT+GGG | + | chr1_4:45700790-45700809 | None:intergenic | 40.0% |
| ! | ACCAAGGTGATGATGAAGTT+TGG | + | chr1_4:45700791-45700810 | None:intergenic | 40.0% |
| ! | TGGAAGCATATGACTCTGAT+TGG | + | chr1_4:45700890-45700909 | None:intergenic | 40.0% |
| GAGTTGACATTGTAACCTCA+AGG | + | chr1_4:45701011-45701030 | None:intergenic | 40.0% | |
| AGTTTCCGTAAACTTCCATG+GGG | + | chr1_4:45701052-45701071 | None:intergenic | 40.0% | |
| GTAGTTTCCGTAAACTTCCA+TGG | + | chr1_4:45701054-45701073 | None:intergenic | 40.0% | |
| CAGGTAATGTCTCCCAATTA+AGG | + | chr1_4:45701196-45701215 | None:intergenic | 40.0% | |
| ! | CAGATTTGAAACAAGGTCTC+AGG | + | chr1_4:45701215-45701234 | None:intergenic | 40.0% |
| AGACACTTTGTATCTTTGGG+AGG | - | chr1_4:45701389-45701408 | Msa0165270:intron | 40.0% | |
| ! | CTTTGTATCTTTGGGAGGTA+AGG | - | chr1_4:45701394-45701413 | Msa0165270:intron | 40.0% |
| ! | GATTGTTTCCAGTTGATGTG+GGG | - | chr1_4:45701532-45701551 | Msa0165270:CDS | 40.0% |
| !!! | GCTTTTGTTTTAGCACCATC+TGG | + | chr1_4:45701598-45701617 | None:intergenic | 40.0% |
| GTTATTTACTGCAGTTGTCG+GGG | + | chr1_4:45701620-45701639 | None:intergenic | 40.0% | |
| ! | GTGCACTATTTTCTTCTGTG+CGG | + | chr1_4:45701693-45701712 | None:intergenic | 40.0% |
| CACAGAAGAAAATAGTGCAC+TGG | - | chr1_4:45701693-45701712 | Msa0165270:intron | 40.0% | |
| !! | GAATAAGCGGATTTTAACCG+AGG | - | chr1_4:45701750-45701769 | Msa0165270:intron | 40.0% |
| TAAGGGATGGAAAGAAAGAG+AGG | + | chr1_4:45701804-45701823 | None:intergenic | 40.0% | |
| GCACATGTATAAGTAAGGGA+TGG | + | chr1_4:45701817-45701836 | None:intergenic | 40.0% | |
| GATTGTGAGGAAGAGAGAGA+AGG | + | chr1_4:45696712-45696731 | None:intergenic | 45.0% | |
| CTTTGCATTCTGGTCGAATG+GGG | + | chr1_4:45697057-45697076 | None:intergenic | 45.0% | |
| GCTTTGCATTCTGGTCGAAT+GGG | + | chr1_4:45697058-45697077 | None:intergenic | 45.0% | |
| AGCTTTGCATTCTGGTCGAA+TGG | + | chr1_4:45697059-45697078 | None:intergenic | 45.0% | |
| GGAACATCAGCTTTGCATTC+TGG | + | chr1_4:45697067-45697086 | None:intergenic | 45.0% | |
| AGCCAAAGTTTCACCCTCTA+AGG | - | chr1_4:45697161-45697180 | Msa0165270:intron | 45.0% | |
| CACCTTAGAGGGTGAAACTT+TGG | + | chr1_4:45697166-45697185 | None:intergenic | 45.0% | |
| !! | CACCCTCTAAGGTGAATAAG+TGG | - | chr1_4:45697172-45697191 | Msa0165270:intron | 45.0% |
| GGTGAATAAGTGGGAATTCC+AGG | - | chr1_4:45697182-45697201 | Msa0165270:intron | 45.0% | |
| GAATTCCAGGATTCGAATCC+CGG | - | chr1_4:45697195-45697214 | Msa0165270:intron | 45.0% | |
| AGCCAATGTTGTCAAATGGC+TGG | + | chr1_4:45697459-45697478 | None:intergenic | 45.0% | |
| CTTAAAGTCTTGCCAGACTG+CGG | + | chr1_4:45697729-45697748 | None:intergenic | 45.0% | |
| !! | TTCTGAGACGAATACAGCGA+GGG | - | chr1_4:45697805-45697824 | Msa0165270:intron | 45.0% |
| GGTGTCCATCCTTCAATCAA+AGG | - | chr1_4:45698262-45698281 | Msa0165270:intron | 45.0% | |
| CATACCTCCCCTTTGATTGA+AGG | + | chr1_4:45698274-45698293 | None:intergenic | 45.0% | |
| CTTCAATCAAAGGGGAGGTA+TGG | - | chr1_4:45698272-45698291 | Msa0165270:intron | 45.0% | |
| GAGGTATGGGAGTTCTTACT+AGG | - | chr1_4:45698286-45698305 | Msa0165270:intron | 45.0% | |
| AAAAAGGCAATGGCAACAGC+AGG | + | chr1_4:45698489-45698508 | None:intergenic | 45.0% | |
| CAATGGTGCAGTAGTAGCAA+TGG | + | chr1_4:45698559-45698578 | None:intergenic | 45.0% | |
| TGGGAACAACAATGTAGGCT+AGG | - | chr1_4:45698729-45698748 | Msa0165270:intron | 45.0% | |
| GGGAACAACAATGTAGGCTA+GGG | - | chr1_4:45698730-45698749 | Msa0165270:intron | 45.0% | |
| CAAAAGATAGTCCCAGTCCT+TGG | - | chr1_4:45699526-45699545 | Msa0165270:intron | 45.0% | |
| ATTTCCCACTACCAAGGACT+GGG | + | chr1_4:45699540-45699559 | None:intergenic | 45.0% | |
| AATTTCCCACTACCAAGGAC+TGG | + | chr1_4:45699541-45699560 | None:intergenic | 45.0% | |
| TTTGTTACAACACCCCTCGT+CGG | - | chr1_4:45699559-45699578 | Msa0165270:intron | 45.0% | |
| CCAAAGAAGGATCTATTGGC+TGG | + | chr1_4:45699594-45699613 | None:intergenic | 45.0% | |
| CCAGCCAATAGATCCTTCTT+TGG | - | chr1_4:45699591-45699610 | Msa0165270:intron | 45.0% | |
| ATCCTTAACCGATGCCCTTA+AGG | - | chr1_4:45699850-45699869 | Msa0165270:intron | 45.0% | |
| CTCTCTCTGTTATGGGACAT+AGG | + | chr1_4:45700689-45700708 | None:intergenic | 45.0% | |
| CCCAAACTTCATCATCACCT+TGG | - | chr1_4:45700787-45700806 | Msa0165270:intron | 45.0% | |
| GACATTGTAACCTCAAGGGA+CGG | + | chr1_4:45701006-45701025 | None:intergenic | 45.0% | |
| GATACCCCCATGGAAGTTTA+CGG | - | chr1_4:45701044-45701063 | Msa0165270:intron | 45.0% | |
| GTTTCCGTAAACTTCCATGG+GGG | + | chr1_4:45701051-45701070 | None:intergenic | 45.0% | |
| ATGTCTCCCAATTAAGGGAG+AGG | + | chr1_4:45701190-45701209 | None:intergenic | 45.0% | |
| ! | GCCGAGACAGATTTGAAACA+AGG | + | chr1_4:45701222-45701241 | None:intergenic | 45.0% |
| TTCGCAGAGGATTTAGATGG+TGG | - | chr1_4:45701306-45701325 | Msa0165270:intron | 45.0% | |
| TAACGATATGATGGCAGCTG+TGG | - | chr1_4:45702651-45702670 | Msa0165270:five_prime_UTR | 45.0% | |
| !! | AAAATAAAGATAAAAAAAAA+AGG | + | chr1_4:45699427-45699446 | None:intergenic | 5.0% |
| TATGTCCGGGATTCGAATCC+TGG | + | chr1_4:45697203-45697222 | None:intergenic | 50.0% | |
| !! | GTTCTGAGACGAATACAGCG+AGG | - | chr1_4:45697804-45697823 | Msa0165270:intron | 50.0% |
| ! | TCTGAGACGAATACAGCGAG+GGG | - | chr1_4:45697806-45697825 | Msa0165270:intron | 50.0% |
| CCTCCCCTTTGATTGAAGGA+TGG | + | chr1_4:45698270-45698289 | None:intergenic | 50.0% | |
| CCATCCTTCAATCAAAGGGG+AGG | - | chr1_4:45698267-45698286 | Msa0165270:intron | 50.0% | |
| ACTCACGATCCAGATCGGTA+AGG | - | chr1_4:45699158-45699177 | Msa0165270:intron | 50.0% | |
| TTTGCTCTGCCTTACCGATC+TGG | + | chr1_4:45699170-45699189 | None:intergenic | 50.0% | |
| ATAGTCCCAGTCCTTGGTAG+TGG | - | chr1_4:45699532-45699551 | Msa0165270:intron | 50.0% | |
| ! | TAGTCCCAGTCCTTGGTAGT+GGG | - | chr1_4:45699533-45699552 | Msa0165270:intron | 50.0% |
| AATGCTCTTAGGGCCCTCAT+TGG | + | chr1_4:45699727-45699746 | None:intergenic | 50.0% | |
| ! | AATGAGGGCCCTAAGAGCAT+TGG | - | chr1_4:45699726-45699745 | Msa0165270:CDS | 50.0% |
| !! | TGCCTTAAGGGCATCGGTTA+AGG | + | chr1_4:45699855-45699874 | None:intergenic | 50.0% |
| ! | AACGAGTGCCTTAAGGGCAT+CGG | + | chr1_4:45699861-45699880 | None:intergenic | 50.0% |
| CAAACAAGGCCTCCCTCAAA+TGG | + | chr1_4:45700408-45700427 | None:intergenic | 50.0% | |
| !! | TGAGGGAGGCCTTGTTTGAT+AGG | - | chr1_4:45700410-45700429 | Msa0165270:intron | 50.0% |
| CTCTGTTATGGGACATAGGC+AGG | + | chr1_4:45700685-45700704 | None:intergenic | 50.0% | |
| GAGAGAGAACTTCAGGGTCA+CGG | - | chr1_4:45700702-45700721 | Msa0165270:intron | 50.0% | |
| AGGGTCACGGCAACTTCAAT+GGG | - | chr1_4:45700715-45700734 | Msa0165270:intron | 50.0% | |
| ! | AATGGGGGTGCAAACTCAGT+TGG | - | chr1_4:45700732-45700751 | Msa0165270:intron | 50.0% |
| ! | ATGGGGGTGCAAACTCAGTT+GGG | - | chr1_4:45700733-45700752 | Msa0165270:intron | 50.0% |
| CAGAGTCATATGCTTCCACG+TGG | - | chr1_4:45700892-45700911 | Msa0165270:intron | 50.0% | |
| ! | GTTTTCAACTCCGTCCCTTG+AGG | - | chr1_4:45700993-45701012 | Msa0165270:CDS | 50.0% |
| TTGGGGACCTCTCCCTTAAT+TGG | - | chr1_4:45701180-45701199 | Msa0165270:intron | 50.0% | |
| TGGGGACCTCTCCCTTAATT+GGG | - | chr1_4:45701181-45701200 | Msa0165270:intron | 50.0% | |
| CTTTGCGTTTCGCATGCTGA+TGG | - | chr1_4:45701338-45701357 | Msa0165270:intron | 50.0% | |
| ! | TTTCCAGTTGATGTGGGGCA+TGG | - | chr1_4:45701537-45701556 | Msa0165270:CDS | 50.0% |
| ATTCCATGCCCCACATCAAC+TGG | + | chr1_4:45701543-45701562 | None:intergenic | 50.0% | |
| GCTAAGTACGAGGATCCAGA+TGG | - | chr1_4:45701580-45701599 | Msa0165270:intron | 50.0% | |
| !! | CGGATTTTAACCGAGGCCAA+GGG | - | chr1_4:45701757-45701776 | Msa0165270:intron | 50.0% |
| GACAACATCATCCACACCCT+TGG | + | chr1_4:45701776-45701795 | None:intergenic | 50.0% | |
| GGGTGTGGATGATGTTGTCA+AGG | - | chr1_4:45701777-45701796 | Msa0165270:intron | 50.0% | |
| GGAATGAGCTCAAGCAACGC+CGG | - | chr1_4:45698341-45698360 | Msa0165270:intron | 55.0% | |
| ! | AGGAAGCATGGCCATCCAAG+AGG | + | chr1_4:45698606-45698625 | None:intergenic | 55.0% |
| CCACATATCATACTGCCCCC+TGG | + | chr1_4:45699494-45699513 | None:intergenic | 55.0% | |
| CCAGGGGGCAGTATGATATG+TGG | - | chr1_4:45699491-45699510 | Msa0165270:intron | 55.0% | |
| CTACCATCCTTCGCATCGCA+CGG | + | chr1_4:45700250-45700269 | None:intergenic | 55.0% | |
| !! | GGGAGGCCTTGTTTGATAGG+AGG | - | chr1_4:45700413-45700432 | Msa0165270:intron | 55.0% |
| CAGGGTCACGGCAACTTCAA+TGG | - | chr1_4:45700714-45700733 | Msa0165270:intron | 55.0% | |
| GGGTCACGGCAACTTCAATG+GGG | - | chr1_4:45700716-45700735 | Msa0165270:intron | 55.0% | |
| GGTCACGGCAACTTCAATGG+GGG | - | chr1_4:45700717-45700736 | Msa0165270:intron | 55.0% | |
| TCGCTAAGCTGATACCCCCA+TGG | - | chr1_4:45701034-45701053 | Msa0165270:intron | 55.0% | |
| !! | GCGGATTTTAACCGAGGCCA+AGG | - | chr1_4:45701756-45701775 | Msa0165270:intron | 55.0% |
| TTTAACCGAGGCCAAGGGTG+TGG | - | chr1_4:45701762-45701781 | Msa0165270:intron | 55.0% | |
| ATCATCCACACCCTTGGCCT+CGG | + | chr1_4:45701770-45701789 | None:intergenic | 55.0% | |
| TGGTTGCGCATGATCTTCCC+AGG | - | chr1_4:45702671-45702690 | Msa0165270:five_prime_UTR | 55.0% | |
| GTCAGGAGCAACTGAAGCCT+GGG | + | chr1_4:45702691-45702710 | None:intergenic | 55.0% | |
| AGTCAGGAGCAACTGAAGCC+TGG | + | chr1_4:45702692-45702711 | None:intergenic | 55.0% | |
| AGGCTTCAGTTGCTCCTGAC+TGG | - | chr1_4:45702691-45702710 | Msa0165270:five_prime_UTR | 55.0% | |
| ATGAGCTCAAGCAACGCCGG+AGG | - | chr1_4:45698344-45698363 | Msa0165270:intron | 60.0% | |
| ACACCCCTCGTCGGTGATGA+TGG | - | chr1_4:45699568-45699587 | Msa0165270:intron | 60.0% | |
| TGGCCATCATCACCGACGAG+GGG | + | chr1_4:45699574-45699593 | None:intergenic | 60.0% | |
| CTGGCCATCATCACCGACGA+GGG | + | chr1_4:45699575-45699594 | None:intergenic | 60.0% | |
| GCTTTGACCGTGCGATGCGA+AGG | - | chr1_4:45700240-45700259 | Msa0165270:intron | 60.0% | |
| TGACCGTGCGATGCGAAGGA+TGG | - | chr1_4:45700244-45700263 | Msa0165270:intron | 60.0% | |
| CGTGCGATGCGAAGGATGGT+AGG | - | chr1_4:45700248-45700267 | Msa0165270:intron | 60.0% | |
| GCTGGCCATCATCACCGACG+AGG | + | chr1_4:45699576-45699595 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 45696533 | 45702756 | 45696533 | ID=Msa0165270;Name=Msa0165270 |
| chr1_4 | mRNA | 45696533 | 45702756 | 45696533 | ID=Msa0165270-mRNA-1;Parent=Msa0165270;Name=Msa0165270-mRNA-1;_AED=0.17;_eAED=0.17;_QI=363|0.54|0.66|1|0.72|0.66|12|0|371 |
| chr1_4 | exon | 45696533 | 45696538 | 45696533 | ID=Msa0165270-mRNA-1:exon:13130;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45697308 | 45697391 | 45697308 | ID=Msa0165270-mRNA-1:exon:13129;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45697500 | 45697745 | 45697500 | ID=Msa0165270-mRNA-1:exon:13128;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45697879 | 45697976 | 45697879 | ID=Msa0165270-mRNA-1:exon:13127;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45698481 | 45698538 | 45698481 | ID=Msa0165270-mRNA-1:exon:13126;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45699024 | 45699112 | 45699024 | ID=Msa0165270-mRNA-1:exon:13125;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45699202 | 45699324 | 45699202 | ID=Msa0165270-mRNA-1:exon:13124;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45699709 | 45699794 | 45699709 | ID=Msa0165270-mRNA-1:exon:13123;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45700924 | 45701027 | 45700924 | ID=Msa0165270-mRNA-1:exon:13122;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45701462 | 45701557 | 45701462 | ID=Msa0165270-mRNA-1:exon:13121;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45702181 | 45702372 | 45702181 | ID=Msa0165270-mRNA-1:exon:13120;Parent=Msa0165270-mRNA-1 |
| chr1_4 | exon | 45702460 | 45702756 | 45702460 | ID=Msa0165270-mRNA-1:exon:13119;Parent=Msa0165270-mRNA-1 |
| chr1_4 | five_prime_UTR | 45702460 | 45702756 | 45702460 | ID=Msa0165270-mRNA-1:five_prime_utr;Parent=Msa0165270-mRNA-1 |
| chr1_4 | five_prime_UTR | 45702307 | 45702372 | 45702307 | ID=Msa0165270-mRNA-1:five_prime_utr;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45702181 | 45702306 | 45702181 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45701462 | 45701557 | 45701462 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45700924 | 45701027 | 45700924 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45699709 | 45699794 | 45699709 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45699202 | 45699324 | 45699202 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45699024 | 45699112 | 45699024 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45698481 | 45698538 | 45698481 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45697879 | 45697976 | 45697879 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45697500 | 45697745 | 45697500 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45697308 | 45697391 | 45697308 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| chr1_4 | CDS | 45696533 | 45696538 | 45696533 | ID=Msa0165270-mRNA-1:cds;Parent=Msa0165270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
