AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032320 MtrunA17_Chr1g0190711 96.838 253 6 2 1 251 1 253 0.0 496
Msa0032320 MtrunA17_Chr1g0187921 64.876 242 67 5 15 251 8 236 7.39e-100 290
Msa0032320 MtrunA17_Chr1g0184791 65.306 245 61 7 17 251 15 245 4.32e-97 284
Msa0032320 MtrunA17_Chr7g0260641 60.656 244 85 4 15 251 11 250 2.63e-89 264
Msa0032320 MtrunA17_Chr5g0411501 47.917 288 96 9 15 251 51 335 1.32e-75 232
Msa0032320 MtrunA17_Chr6g0486121 50.190 263 80 8 15 250 15 253 3.13e-74 226
Msa0032320 MtrunA17_Chr8g0390281 48.029 279 92 7 15 250 24 292 4.23e-74 227
Msa0032320 MtrunA17_Chr8g0366881 47.387 287 96 8 15 251 67 348 1.15e-73 228
Msa0032320 MtrunA17_Chr5g0428141 47.719 285 97 7 15 250 65 346 1.23e-71 223
Msa0032320 MtrunA17_Chr2g0331411 44.805 308 95 9 13 250 23 325 4.17e-71 221
Msa0032320 MtrunA17_Chr7g0260621 46.753 231 81 7 14 240 10 202 2.62e-56 179
Msa0032320 MtrunA17_Chr1g0184801 47.162 229 80 5 15 240 12 202 5.71e-55 175
Msa0032320 MtrunA17_Chr1g0166011 43.805 226 84 6 15 240 1 183 5.26e-53 170
Msa0032320 MtrunA17_Chr1g0187961 46.222 225 64 8 15 239 11 178 1.06e-52 169
Msa0032320 MtrunA17_Chr1g0183251 43.716 183 71 4 96 246 81 263 5.80e-37 131
Msa0032320 MtrunA17_Chr4g0004181 41.991 231 68 9 15 243 6 172 3.56e-36 126
Msa0032320 MtrunA17_Chr2g0332141 58.252 103 33 3 135 234 8 103 2.11e-34 120
Msa0032320 MtrunA17_Chr2g0330951 36.220 254 122 10 21 242 18 263 4.33e-33 121
Msa0032320 MtrunA17_Chr8g0340731 35.223 247 126 10 21 235 16 260 9.40e-32 117
Msa0032320 MtrunA17_Chr4g0069561 35.461 141 61 4 95 233 69 181 4.82e-18 79.3
Msa0032320 MtrunA17_Chr3g0137601 30.000 140 79 4 97 235 88 209 5.88e-18 79.7
Msa0032320 MtrunA17_Chr1g0193861 39.796 98 47 3 135 232 85 170 1.94e-15 72.0
Msa0032320 MtrunA17_Chr7g0270851 38.095 105 45 3 132 232 67 155 2.57e-15 71.2
Msa0032320 MtrunA17_Chr4g0064131 27.815 151 86 3 82 232 78 205 3.67e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032320 AT3G04730.1 66.000 250 59 6 14 251 1 236 8.82e-103 298
Msa0032320 AT4G14550.1 64.706 238 73 4 15 251 1 228 3.47e-99 289
Msa0032320 AT3G23050.1 62.195 246 78 6 14 251 5 243 2.08e-97 285
Msa0032320 AT4G14550.2 63.436 227 72 4 15 240 1 217 2.92e-91 269
Msa0032320 AT1G04250.1 57.741 239 83 6 15 251 7 229 1.15e-87 259
Msa0032320 AT4G29080.1 51.799 278 93 9 9 250 32 304 1.76e-78 239
Msa0032320 AT4G14550.3 60.976 205 69 4 15 218 1 195 2.59e-76 229
Msa0032320 AT3G23050.2 58.216 213 75 5 14 219 5 210 6.92e-75 226
Msa0032320 AT5G65670.2 48.264 288 101 9 7 251 54 336 1.77e-68 214
Msa0032320 AT2G22670.3 45.357 280 101 6 15 250 47 318 2.27e-67 211
Msa0032320 AT2G22670.1 45.357 280 101 6 15 250 47 318 2.27e-67 211
Msa0032320 AT2G22670.4 45.357 280 101 6 15 250 64 335 3.01e-67 211
Msa0032320 AT5G65670.1 47.931 290 101 10 7 251 54 338 1.35e-66 210
Msa0032320 AT2G22670.5 44.643 280 101 7 15 250 47 316 4.66e-64 202
Msa0032320 AT2G22670.2 44.643 280 101 7 15 250 47 316 4.66e-64 202
Msa0032320 AT1G04240.1 47.137 227 76 7 14 240 4 186 1.63e-59 187
Msa0032320 AT1G04240.2 47.137 227 76 7 14 240 104 286 3.02e-58 187
Msa0032320 AT5G43700.1 48.899 227 62 9 14 240 10 182 3.18e-58 183
Msa0032320 AT4G14550.4 57.500 160 57 4 15 173 1 150 7.45e-48 157
Msa0032320 AT3G23050.3 53.293 167 64 5 14 173 5 164 2.17e-45 150
Msa0032320 AT3G23030.1 41.453 234 66 5 10 239 4 170 2.46e-45 150
Msa0032320 AT3G23030.2 41.453 234 66 5 10 239 91 257 1.16e-44 151
Msa0032320 AT4G14560.1 40.991 222 67 6 15 236 7 164 2.06e-43 145
Msa0032320 AT3G15540.1 42.739 241 80 10 15 246 6 197 2.35e-43 145
Msa0032320 AT2G33310.2 43.684 190 85 6 73 245 53 237 3.56e-39 136
Msa0032320 AT1G15580.1 40.724 221 61 7 15 234 8 159 1.65e-38 132
Msa0032320 AT2G33310.3 43.158 190 85 6 73 245 53 236 8.95e-38 133
Msa0032320 AT2G33310.1 43.158 190 85 6 73 245 53 236 8.95e-38 133
Msa0032320 AT1G04550.2 43.085 188 70 6 83 246 56 230 2.70e-37 131
Msa0032320 AT1G52830.1 38.938 226 92 8 15 240 6 185 1.43e-35 125
Msa0032320 AT3G16500.1 36.290 248 117 9 8 235 26 252 5.69e-35 126
Msa0032320 AT3G16500.2 36.290 248 117 9 8 235 26 252 6.70e-35 126
Msa0032320 AT4G28640.1 37.179 234 112 7 29 240 22 242 3.68e-33 121
Msa0032320 AT4G28640.3 37.069 232 111 7 29 238 22 240 8.33e-33 120
Msa0032320 AT4G28640.2 37.069 232 111 7 29 238 22 240 3.22e-32 120
Msa0032320 AT1G51950.1 36.905 252 102 10 10 235 30 250 3.60e-31 116
Msa0032320 AT5G25890.1 36.842 190 93 5 54 242 7 170 1.47e-27 104
Msa0032320 AT1G04100.1 36.694 248 123 8 24 240 16 260 1.04e-26 104
Msa0032320 AT3G17600.1 34.848 132 61 3 101 232 48 154 1.04e-21 88.6
Msa0032320 AT2G46990.1 39.583 96 45 1 135 230 86 168 1.14e-16 75.9
Msa0032320 AT3G62100.1 38.776 98 47 1 135 232 84 168 1.62e-16 75.1
Msa0032320 AT4G32280.1 27.684 177 81 4 85 232 82 240 5.36e-16 75.5
Msa0032320 AT4G32280.2 35.714 98 45 2 135 232 119 198 9.46e-16 73.9
Msa0032320 AT1G80390.1 33.553 152 55 4 20 171 19 124 3.63e-13 65.1
Msa0032320 AT2G46990.2 38.824 85 39 1 135 219 86 157 5.98e-12 62.4
Msa0032320 AT3G62100.2 37.647 85 40 1 135 219 84 155 1.87e-11 61.2

Find 120 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAACTCTTGTACAATTTA+AGG 0.136546 1_1:+59361990 None:intergenic
AGATTTGATCAACTATATTT+TGG 0.216118 1_1:+59364808 None:intergenic
TGGCTTTGGATGTTCATATA+TGG 0.227683 1_1:+59364828 None:intergenic
TATATTTGGTGAAGGGGTTA+TGG 0.280748 1_1:+59364526 None:intergenic
GATGAAGCAGAATCATTTAT+AGG 0.292641 1_1:+59364192 None:intergenic
CTCGAGCCAACTTGCTTCCT+TGG 0.317287 1_1:+59361277 None:intergenic
AAATTAGGTGGAAATTCATT+AGG 0.319576 1_1:-59361143 Msa0032320:three_prime_UTR
ATGTTTCCAGTTATCATTGC+TGG 0.325654 1_1:-59361009 Msa0032320:three_prime_UTR
TCATAAAGTCCTTGGTAACT+TGG 0.357262 1_1:+59361906 None:intergenic
TGCTTGTTGGTGATGTTCCT+TGG 0.360170 1_1:-59361808 Msa0032320:CDS
ATATTTGGTGAAGGGGTTAT+GGG 0.360734 1_1:+59364527 None:intergenic
ATACCATGTGCTTGTTGTTA+CGG 0.369275 1_1:-59360767 Msa0032320:three_prime_UTR
GGCTTTGGATGTTCATATAT+GGG 0.373682 1_1:+59364829 None:intergenic
TTCTTTCTAAAGGATCTAAC+TGG 0.382249 1_1:+59362133 None:intergenic
GAGTTACGACTCGGTCTTCC+AGG 0.382644 1_1:-59364309 Msa0032320:CDS
TTATATATGAATGAGAAATT+AGG 0.392785 1_1:-59361158 Msa0032320:three_prime_UTR
ATTTACTATGTTCTTTCTAA+AGG 0.395708 1_1:+59362123 None:intergenic
CTTGTTGTTACGGCCTTCAA+TGG 0.396997 1_1:-59360757 Msa0032320:three_prime_UTR
TCGAGCCAACTTGCTTCCTT+GGG 0.403910 1_1:+59361278 None:intergenic
AAGGAAAAGGCAGGCAAGTA+GGG 0.404980 1_1:-59364695 Msa0032320:five_prime_UTR
ACAAATCCAGCAATGATAAC+TGG 0.406835 1_1:+59361003 None:intergenic
TTTGGTGATATATTTGGTGA+AGG 0.407964 1_1:+59364518 None:intergenic
AATCACAAAATAAGAATAAG+AGG 0.408703 1_1:+59360705 None:intergenic
TTGGTGATATATTTGGTGAA+GGG 0.409957 1_1:+59364519 None:intergenic
GTGCGTTTAGAAGATGGTTT+TGG 0.410984 1_1:+59364500 None:intergenic
AGGTCCACCTTACGTAGATA+TGG 0.411796 1_1:+59362010 None:intergenic
CTTGTCTGTCAAGTTGTAAA+TGG 0.415347 1_1:-59360838 Msa0032320:three_prime_UTR
ATGAAAGGTTCCGAGGCAAT+TGG 0.416704 1_1:-59361502 Msa0032320:CDS
CCTTCACAATTGACAATTGT+GGG 0.417767 1_1:-59361931 Msa0032320:CDS
GCTTGTTGGTGATGTTCCTT+GGG 0.420684 1_1:-59361807 Msa0032320:CDS
CAATAAATATGATACGTATA+AGG 0.420782 1_1:+59360924 None:intergenic
GGATTATAAGGGGATTTGTC+GGG 0.422567 1_1:+59364598 None:intergenic
AAGAGAAAATGACTAACGTT+GGG 0.423757 1_1:-59364377 Msa0032320:exon
AAAGGCAGGCAAGTAGGGGC+AGG 0.426754 1_1:-59364690 Msa0032320:five_prime_UTR
TGGATTATAAGGGGATTTGT+CGG 0.427263 1_1:+59364597 None:intergenic
GTATGGGTCCACCATGTTCA+TGG 0.428942 1_1:+59360786 None:intergenic
CACCATGTTCATGGATCTAA+AGG 0.433435 1_1:+59360795 None:intergenic
GCTTTCATTCATAAAGTCCT+TGG 0.434299 1_1:+59361898 None:intergenic
AATTAGGTGGAAATTCATTA+GGG 0.434858 1_1:-59361142 Msa0032320:three_prime_UTR
AGTAAGGTCGAGGCTAATAT+AGG 0.437617 1_1:-59361256 Msa0032320:three_prime_UTR
TTGTAGTGGACATACTAGTT+TGG 0.446414 1_1:+59364666 None:intergenic
GCACATACTCTGTCACGTAT+TGG 0.454043 1_1:+59360958 None:intergenic
AGCACAAGTGGTGGTGGGAA+TGG 0.463834 1_1:-59362064 Msa0032320:CDS
TGGAGATGTTGACACGTGTA+TGG 0.465271 1_1:+59364563 None:intergenic
AAAGGAAAAGGCAGGCAAGT+AGG 0.470110 1_1:-59364696 Msa0032320:five_prime_UTR
CCAGCGCATCTGACAGCTCT+TGG 0.472063 1_1:+59361969 None:intergenic
TGAAAGGTTCCGAGGCAATT+GGG 0.476415 1_1:-59361501 Msa0032320:CDS
AATTTGTAGGGCACAAGTTG+TGG 0.477874 1_1:-59362164 Msa0032320:intron
CATAATCAGAACCGTTCAAA+AGG 0.478352 1_1:+59361864 None:intergenic
CCATCTTTGTCTTCATATGT+TGG 0.478384 1_1:+59361839 None:intergenic
CCAAGAGCTGTCAGATGCGC+TGG 0.479602 1_1:-59361969 Msa0032320:CDS
GATAAGAGCACAAGTGGTGG+TGG 0.485348 1_1:-59362070 Msa0032320:CDS
GAAGCAAGTTGGCTCGAGTA+AGG 0.490808 1_1:-59361272 Msa0032320:three_prime_UTR
TGTTAATTGGTGGGTAGCAA+AGG 0.491610 1_1:-59364714 Msa0032320:five_prime_UTR
TCCTTCACAATTGACAATTG+TGG 0.492530 1_1:-59361932 Msa0032320:CDS
ATGAAGACAAAGATGGTGAT+TGG 0.495668 1_1:-59361832 Msa0032320:CDS
TCATTCCCACCAAATAAGAT+TGG 0.505558 1_1:-59364749 Msa0032320:five_prime_UTR
TTTAGACCAATCTTATTTGG+TGG 0.506070 1_1:+59364743 None:intergenic
TTGTTACGGCCTTCAATGGA+GGG 0.514258 1_1:-59360753 Msa0032320:three_prime_UTR
ATTTGGTGAAGGGGTTATGG+GGG 0.518976 1_1:+59364529 None:intergenic
TTAGACCAATCTTATTTGGT+GGG 0.521671 1_1:+59364744 None:intergenic
GATGGTGATTGGATGCTTGT+TGG 0.521825 1_1:-59361821 Msa0032320:CDS
GGTTCCGAGGCAATTGGGCT+AGG 0.522558 1_1:-59361496 Msa0032320:intron
GTAACAACAAGCACATGGTA+TGG 0.524061 1_1:+59360769 None:intergenic
GTTGTTACGGCCTTCAATGG+AGG 0.529108 1_1:-59360754 Msa0032320:three_prime_UTR
TGGTGATATATTTGGTGAAG+GGG 0.529685 1_1:+59364520 None:intergenic
CATAAAGTCCTTGGTAACTT+GGG 0.531177 1_1:+59361907 None:intergenic
GTAGTGGATCCCTCCATTGA+AGG 0.539963 1_1:+59360744 None:intergenic
TTTACCTAGCCCAATTGCCT+CGG 0.542690 1_1:+59361492 None:intergenic
GCAGATTTATCAACCAGAAG+TGG 0.545785 1_1:+59361303 None:intergenic
TGGAAGACCGAGTCGTAACT+CGG 0.546250 1_1:+59364311 None:intergenic
TGGGAATGGAGCATTTGTTA+AGG 0.549372 1_1:-59362050 Msa0032320:CDS
ATTTGTAGGGCACAAGTTGT+GGG 0.551340 1_1:-59362163 Msa0032320:intron
CTTCCAGGTGCATGTGATCA+CGG 0.554985 1_1:-59364294 Msa0032320:CDS
TATATGAATGAGAAATTAGG+TGG 0.560071 1_1:-59361155 Msa0032320:three_prime_UTR
AAAGAGAAAATGACTAACGT+TGG 0.560324 1_1:-59364378 Msa0032320:exon
ACTCACTTAGCACGAGGAGG+AGG 0.560950 1_1:+59364102 None:intergenic
TAAATGGAGTTGATTTGTTG+AGG 0.561395 1_1:-59360822 Msa0032320:three_prime_UTR
GGGGATTTGTCGGGAAAATG+AGG 0.562737 1_1:+59364607 None:intergenic
TTGTCGGGAAAATGAGGTCA+TGG 0.565268 1_1:+59364613 None:intergenic
TGTAATAATAAGAATGATTG+TGG 0.565492 1_1:+59364640 None:intergenic
TTTGATGGTTGGATTATAAG+GGG 0.568755 1_1:+59364588 None:intergenic
TTTGTTAAGGTGAGCATGGA+TGG 0.571730 1_1:-59362037 Msa0032320:CDS
TTGGTGGGTAGCAAAGGAAA+AGG 0.578838 1_1:-59364708 Msa0032320:five_prime_UTR
GAAGCAGATAAGAGCACAAG+TGG 0.581742 1_1:-59362076 Msa0032320:CDS
TAACAACAAGCACATGGTAT+GGG 0.581887 1_1:+59360770 None:intergenic
CCAACATATGAAGACAAAGA+TGG 0.591098 1_1:-59361839 Msa0032320:CDS
GGAGATGTTGACACGTGTAT+GGG 0.591297 1_1:+59364564 None:intergenic
AGGAAAAGGCAGGCAAGTAG+GGG 0.592809 1_1:-59364694 Msa0032320:five_prime_UTR
TCTCCGTGATCACATGCACC+TGG 0.592832 1_1:+59364291 None:intergenic
AAATATGATACGTATAAGGT+AGG 0.598381 1_1:+59360928 None:intergenic
GTAGGGCACAAGTTGTGGGA+TGG 0.599917 1_1:-59362159 Msa0032320:intron
TGCATCCCAAGGAAGCAAGT+TGG 0.600502 1_1:-59361283 Msa0032320:three_prime_UTR
TATTTGGTGAAGGGGTTATG+GGG 0.602160 1_1:+59364528 None:intergenic
AGCATTTGTTAAGGTGAGCA+TGG 0.602441 1_1:-59362041 Msa0032320:CDS
TGGGTAGCAAAGGAAAAGGC+AGG 0.603737 1_1:-59364704 Msa0032320:five_prime_UTR
CCCACAATTGTCAATTGTGA+AGG 0.603780 1_1:+59361931 None:intergenic
AGTTGGCTCGAGTAAGGTCG+AGG 0.607074 1_1:-59361266 Msa0032320:three_prime_UTR
TGGTGCACCATATCTACGTA+AGG 0.613344 1_1:-59362017 Msa0032320:CDS
GAACATATGAAATAAAGTAG+TGG 0.616500 1_1:+59360728 None:intergenic
TTTCTAAAGGATCTAACTGG+TGG 0.617257 1_1:+59362136 None:intergenic
GCAGATAAGAGCACAAGTGG+TGG 0.620410 1_1:-59362073 Msa0032320:CDS
AAGCGTCTTCGCATAATGAA+AGG 0.624465 1_1:-59361517 Msa0032320:CDS
ATCACAAAATAAGAATAAGA+GGG 0.625000 1_1:+59360706 None:intergenic
GCTTCTGTAGCTGAAAACAA+AGG 0.627006 1_1:-59364156 Msa0032320:CDS
ATAAGAGCACAAGTGGTGGT+GGG 0.631680 1_1:-59362069 Msa0032320:CDS
TGTCAACATCTCCATCCATA+CGG 0.632326 1_1:-59364554 Msa0032320:five_prime_UTR
TGCCTTTAGATCCATGAACA+TGG 0.636868 1_1:-59360797 Msa0032320:three_prime_UTR
GTTGATAAATCTGCATCCCA+AGG 0.636946 1_1:-59361294 Msa0032320:three_prime_UTR
GAGGAGACCGAGTTACGACT+CGG 0.639589 1_1:-59364318 Msa0032320:CDS
AAGAGGGGAACTCACTCCCA+AGG 0.640728 1_1:+59361791 None:intergenic
ATTATAAGTCAAGCACACGC+TGG 0.650658 1_1:+59361039 None:intergenic
AGAGAAAATGACTAACGTTG+GGG 0.657706 1_1:-59364376 Msa0032320:exon
TTGTGGGTCCCAAGTTACCA+AGG 0.660834 1_1:-59361915 Msa0032320:CDS
TCGCATAATGAAAGGTTCCG+AGG 0.668062 1_1:-59361509 Msa0032320:CDS
TGTTGTGTACTATACTACAA+AGG 0.668798 1_1:+59360865 None:intergenic
TGCACCATATCTACGTAAGG+TGG 0.669757 1_1:-59362014 Msa0032320:CDS
AGGCCGTAACAACAAGCACA+TGG 0.695694 1_1:+59360764 None:intergenic
AAAACTCACTTAGCACGAGG+AGG 0.704960 1_1:+59364099 None:intergenic
CTTTAGATCCATGAACATGG+TGG 0.719280 1_1:-59360794 Msa0032320:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTAGATTTTTTTTTTA+AGG - chr1_1:59361758-59361777 Msa0032320:intron 10.0%
!!! AGATTAGATTTTTTTTTTAA+GGG - chr1_1:59361759-59361778 Msa0032320:intron 10.0%
!!! ATTTTGAATAAGTTTTAATT+AGG - chr1_1:59361832-59361851 Msa0032320:CDS 10.0%
!!! CTTATAAAAATGTTTTAATT+AGG - chr1_1:59361858-59361877 Msa0032320:CDS 10.0%
!!! AATTTTATTCAAAAAATTTG+AGG + chr1_1:59362503-59362522 None:intergenic 10.0%
!!! AATAATAGTATTATTTTAGT+TGG - chr1_1:59362826-59362845 Msa0032320:intron 10.0%
!!! TCTTTTTCTTTTTCTTTTTT+TGG + chr1_1:59361095-59361114 None:intergenic 15.0%
!! TGAATAATTAAGTTATATCT+AGG - chr1_1:59361564-59361583 Msa0032320:intron 15.0%
!! ATATTATTGTTTAACAAAAC+AGG + chr1_1:59362255-59362274 None:intergenic 15.0%
!!! AAGTTTAATGTTAGTTTTTA+TGG + chr1_1:59362312-59362331 None:intergenic 15.0%
!! ATTAAAATTCATGTCAAAAT+AGG + chr1_1:59362529-59362548 None:intergenic 15.0%
!!! TGTAATAAAATTGATTTTGA+AGG + chr1_1:59362597-59362616 None:intergenic 15.0%
!!! AGTTTTTAAAAGAATAAACA+TGG - chr1_1:59362656-59362675 Msa0032320:intron 15.0%
!!! AAAAAAAATAAAGTATTGGA+TGG - chr1_1:59362775-59362794 Msa0032320:intron 15.0%
!! AATTAACAATATTATATGAG+TGG + chr1_1:59362935-59362954 None:intergenic 15.0%
!! ATTTGTGTTTAATTAGAAAT+TGG - chr1_1:59363094-59363113 Msa0032320:intron 15.0%
!!! ACGATGTAATAAATTTTTAT+TGG + chr1_1:59363869-59363888 None:intergenic 15.0%
!! TCAAATGTATTTAACAAATT+AGG - chr1_1:59364080-59364099 Msa0032320:intron 15.0%
!! TTATATATGAATGAGAAATT+AGG - chr1_1:59364365-59364384 Msa0032320:CDS 15.0%
!! TTGGACAAAATAAAAATAAT+GGG + chr1_1:59364549-59364568 None:intergenic 15.0%
!! ATTGGACAAAATAAAAATAA+TGG + chr1_1:59364550-59364569 None:intergenic 15.0%
!!! AGATTTGATCAACTATATTT+TGG + chr1_1:59360718-59360737 None:intergenic 20.0%
!! GTCTAAAAAGAATTGTTAAT+TGG - chr1_1:59360796-59360815 Msa0032320:three_prime_UTR 20.0%
!! TAAAAAGAATTGTTAATTGG+TGG - chr1_1:59360799-59360818 Msa0032320:three_prime_UTR 20.0%
!! AAAAAGAATTGTTAATTGGT+GGG - chr1_1:59360800-59360819 Msa0032320:three_prime_UTR 20.0%
!! TGTAATAATAAGAATGATTG+TGG + chr1_1:59360886-59360905 None:intergenic 20.0%
!! TCATAGAGTATAGATAATTA+AGG - chr1_1:59361691-59361710 Msa0032320:intron 20.0%
!!! ATCTAATCTTTTCAATTCAA+TGG + chr1_1:59361748-59361767 None:intergenic 20.0%
!!! AATGTTTTAATTAGGTTAGA+AGG - chr1_1:59361866-59361885 Msa0032320:CDS 20.0%
!!! TTTTTTGAACATGACAATTT+TGG - chr1_1:59361976-59361995 Msa0032320:CDS 20.0%
!! ATTTGTTTGTGAAAAACTAT+TGG - chr1_1:59362032-59362051 Msa0032320:CDS 20.0%
!!! TAATTTTTCTTCACATAATC+TGG + chr1_1:59362742-59362761 None:intergenic 20.0%
!!! TTTATTTATCCTTTTGTTTG+GGG + chr1_1:59362959-59362978 None:intergenic 20.0%
!!! CTTTATTTATCCTTTTGTTT+GGG + chr1_1:59362960-59362979 None:intergenic 20.0%
!!! ACTTTATTTATCCTTTTGTT+TGG + chr1_1:59362961-59362980 None:intergenic 20.0%
!! AAGGATAAATAAAGTTGAAA+AGG - chr1_1:59362966-59362985 Msa0032320:intron 20.0%
!! GTAAATTATGCATGAATTAT+TGG + chr1_1:59363053-59363072 None:intergenic 20.0%
!! CATAATTTACTGTAGTATAA+AGG - chr1_1:59363063-59363082 Msa0032320:intron 20.0%
!! TCAATGAATATTGAATTTGT+AGG - chr1_1:59363346-59363365 Msa0032320:intron 20.0%
!! CAATGAATATTGAATTTGTA+GGG - chr1_1:59363347-59363366 Msa0032320:intron 20.0%
!! ATTTACTATGTTCTTTCTAA+AGG + chr1_1:59363403-59363422 None:intergenic 20.0%
!! AAATTAAACAATGTAATGTG+AGG + chr1_1:59363765-59363784 None:intergenic 20.0%
!! TGGACAAAATAAAAATAATG+GGG + chr1_1:59364548-59364567 None:intergenic 20.0%
!! CAATAAATATGATACGTATA+AGG + chr1_1:59364602-59364621 None:intergenic 20.0%
!! ATCACAAAATAAGAATAAGA+GGG + chr1_1:59364820-59364839 None:intergenic 20.0%
!! AATCACAAAATAAGAATAAG+AGG + chr1_1:59364821-59364840 None:intergenic 20.0%
!! CTTTTTAGACCAATCTTATT+TGG + chr1_1:59360786-59360805 None:intergenic 25.0%
!!! TTTTGATGGTTGGATTATAA+GGG + chr1_1:59360939-59360958 None:intergenic 25.0%
!!! TTATATCTAGGTTTTGTTTG+AGG - chr1_1:59361576-59361595 Msa0032320:intron 25.0%
! TTATCTATACTCTATGAACA+AGG + chr1_1:59361688-59361707 None:intergenic 25.0%
!! GTTTCTTGTTCCATAATTTT+TGG - chr1_1:59361924-59361943 Msa0032320:CDS 25.0%
!! ATAATCTGGATGACATTTTT+AGG + chr1_1:59362728-59362747 None:intergenic 25.0%
!!! AAAAATAAAGTATTGGATGG+TGG - chr1_1:59362778-59362797 Msa0032320:intron 25.0%
!!! TTTTAGTTGGATTTTTTCTG+CGG - chr1_1:59362839-59362858 Msa0032320:intron 25.0%
!!! TTATTTATCCTTTTGTTTGG+GGG + chr1_1:59362958-59362977 None:intergenic 25.0%
! AGACTATATAACAATGTGAT+AGG + chr1_1:59363026-59363045 None:intergenic 25.0%
! GTCTGTTTAATAAGATTAGT+TGG - chr1_1:59363298-59363317 Msa0032320:intron 25.0%
!! AAATTGATTGACCTTTTGAA+CGG - chr1_1:59363648-59363667 Msa0032320:intron 25.0%
!! AAATTAGGTTTAGAACCATA+TGG - chr1_1:59364095-59364114 Msa0032320:intron 25.0%
! ATAAGATAAGATGTACCATA+TGG + chr1_1:59364113-59364132 None:intergenic 25.0%
! TATATGAATGAGAAATTAGG+TGG - chr1_1:59364368-59364387 Msa0032320:CDS 25.0%
! AAATTAGGTGGAAATTCATT+AGG - chr1_1:59364380-59364399 Msa0032320:exon 25.0%
! AATTAGGTGGAAATTCATTA+GGG - chr1_1:59364381-59364400 Msa0032320:exon 25.0%
!!! ACCCAGTTTTTGTTATTATA+AGG - chr1_1:59364434-59364453 Msa0032320:five_prime_UTR 25.0%
! CCCTTATAATAACAAAAACT+GGG + chr1_1:59364438-59364457 None:intergenic 25.0%
!!! CCCAGTTTTTGTTATTATAA+GGG - chr1_1:59364435-59364454 Msa0032320:five_prime_UTR 25.0%
!!! CCAGTTTTTGTTATTATAAG+GGG - chr1_1:59364436-59364455 Msa0032320:five_prime_UTR 25.0%
!! GACAAAATAAAAATAATGGG+GGG + chr1_1:59364546-59364565 None:intergenic 25.0%
! GGACAAAATAAAAATAATGG+GGG + chr1_1:59364547-59364566 None:intergenic 25.0%
! AAATATGATACGTATAAGGT+AGG + chr1_1:59364598-59364617 None:intergenic 25.0%
! GAACATATGAAATAAAGTAG+TGG + chr1_1:59364798-59364817 None:intergenic 25.0%
!!! GATCAACTATATTTTGGCTT+TGG + chr1_1:59360712-59360731 None:intergenic 30.0%
! TTAGACCAATCTTATTTGGT+GGG + chr1_1:59360782-59360801 None:intergenic 30.0%
! TTTAGACCAATCTTATTTGG+TGG + chr1_1:59360783-59360802 None:intergenic 30.0%
! AATGATTGTGGTTTTTGTAG+TGG + chr1_1:59360874-59360893 None:intergenic 30.0%
! TTTGATGGTTGGATTATAAG+GGG + chr1_1:59360938-59360957 None:intergenic 30.0%
!! GTTTTGATGGTTGGATTATA+AGG + chr1_1:59360940-59360959 None:intergenic 30.0%
! TTGGTGATATATTTGGTGAA+GGG + chr1_1:59361007-59361026 None:intergenic 30.0%
! TTTGGTGATATATTTGGTGA+AGG + chr1_1:59361008-59361027 None:intergenic 30.0%
!!! GATGGTTTTGGTGATATATT+TGG + chr1_1:59361014-59361033 None:intergenic 30.0%
!!! TTTTTTGTGCGTTTAGAAGA+TGG + chr1_1:59361032-59361051 None:intergenic 30.0%
AAAGAGAAAATGACTAACGT+TGG - chr1_1:59361145-59361164 Msa0032320:three_prime_UTR 30.0%
AAGAGAAAATGACTAACGTT+GGG - chr1_1:59361146-59361165 Msa0032320:three_prime_UTR 30.0%
! GTACAGCTTGATAAATTTTG+AGG - chr1_1:59361186-59361205 Msa0032320:three_prime_UTR 30.0%
TCACCTGTTAAAAATAGTTG+CGG - chr1_1:59361256-59361275 Msa0032320:three_prime_UTR 30.0%
!!! TTTCCGCAACTATTTTTAAC+AGG + chr1_1:59361262-59361281 None:intergenic 30.0%
GATGAAGCAGAATCATTTAT+AGG + chr1_1:59361334-59361353 None:intergenic 30.0%
GTTTGTGATTAAAGATCACA+CGG - chr1_1:59361891-59361910 Msa0032320:CDS 30.0%
GCAAATTCTGCCAAAAATTA+TGG + chr1_1:59361937-59361956 None:intergenic 30.0%
! TTTGAACATGACAATTTTGG+TGG - chr1_1:59361979-59361998 Msa0032320:CDS 30.0%
! ATTGGCAATTTGAGTTTGAT+TGG - chr1_1:59362050-59362069 Msa0032320:CDS 30.0%
AAAGAAAAAGACAAGACACT+TGG - chr1_1:59362889-59362908 Msa0032320:intron 30.0%
TGAACATCAACGATCTTAAT+CGG + chr1_1:59363174-59363193 None:intergenic 30.0%
! TTCTTTCTAAAGGATCTAAC+TGG + chr1_1:59363393-59363412 None:intergenic 30.0%
GGTAACTCTTGTACAATTTA+AGG + chr1_1:59363536-59363555 None:intergenic 30.0%
AATGTGAGGTGAAAAAAAGA+GGG + chr1_1:59363751-59363770 None:intergenic 30.0%
TAATGTGAGGTGAAAAAAAG+AGG + chr1_1:59363752-59363771 None:intergenic 30.0%
! TAATCTGATGATGAATGGAT+TGG + chr1_1:59363830-59363849 None:intergenic 30.0%
! ATGATCAAAGTGTTATGAGT+TGG + chr1_1:59363921-59363940 None:intergenic 30.0%
CCCCTTATAATAACAAAAAC+TGG + chr1_1:59364439-59364458 None:intergenic 30.0%
TGTTGTGTACTATACTACAA+AGG + chr1_1:59364661-59364680 None:intergenic 30.0%
!! TAAATGGAGTTGATTTGTTG+AGG - chr1_1:59364701-59364720 Msa0032320:five_prime_UTR 30.0%
!! GGCTTTGGATGTTCATATAT+GGG + chr1_1:59360697-59360716 None:intergenic 35.0%
!! TGGCTTTGGATGTTCATATA+TGG + chr1_1:59360698-59360717 None:intergenic 35.0%
TCATTCCCACCAAATAAGAT+TGG - chr1_1:59360774-59360793 Msa0032320:three_prime_UTR 35.0%
!! TTGTAGTGGACATACTAGTT+TGG + chr1_1:59360860-59360879 None:intergenic 35.0%
TGGATTATAAGGGGATTTGT+CGG + chr1_1:59360929-59360948 None:intergenic 35.0%
! ATATTTGGTGAAGGGGTTAT+GGG + chr1_1:59360999-59361018 None:intergenic 35.0%
! TATATTTGGTGAAGGGGTTA+TGG + chr1_1:59361000-59361019 None:intergenic 35.0%
! TGGTGATATATTTGGTGAAG+GGG + chr1_1:59361006-59361025 None:intergenic 35.0%
AGAGAAAATGACTAACGTTG+GGG - chr1_1:59361147-59361166 Msa0032320:three_prime_UTR 35.0%
AAAAATAGTTGCGGAAAGAG+AGG - chr1_1:59361265-59361284 Msa0032320:three_prime_UTR 35.0%
ATTTGTGTGCAACACTATTG+AGG - chr1_1:59361628-59361647 Msa0032320:intron 35.0%
TTTGTGTGCAACACTATTGA+GGG - chr1_1:59361629-59361648 Msa0032320:intron 35.0%
AGGGGAATCTTATTAGAAAG+AGG - chr1_1:59361648-59361667 Msa0032320:intron 35.0%
AAGATCACACGGTTACAATT+AGG - chr1_1:59361902-59361921 Msa0032320:CDS 35.0%
GAATAAACATGGACAACGTA+TGG - chr1_1:59362667-59362686 Msa0032320:intron 35.0%
ACAACGTATGGTAATCAATC+AGG - chr1_1:59362679-59362698 Msa0032320:intron 35.0%
CAACGTATGGTAATCAATCA+GGG - chr1_1:59362680-59362699 Msa0032320:intron 35.0%
TGTTAATTCCCCCAAACAAA+AGG - chr1_1:59362947-59362966 Msa0032320:intron 35.0%
TCAATGACGATAGAGAATCA+TGG - chr1_1:59363224-59363243 Msa0032320:intron 35.0%
! TTTCTAAAGGATCTAACTGG+TGG + chr1_1:59363390-59363409 None:intergenic 35.0%
TCCTTCACAATTGACAATTG+TGG - chr1_1:59363591-59363610 Msa0032320:intron 35.0%
CCTTCACAATTGACAATTGT+GGG - chr1_1:59363592-59363611 Msa0032320:intron 35.0%
! CATAAAGTCCTTGGTAACTT+GGG + chr1_1:59363619-59363638 None:intergenic 35.0%
! TCATAAAGTCCTTGGTAACT+TGG + chr1_1:59363620-59363639 None:intergenic 35.0%
GCTTTCATTCATAAAGTCCT+TGG + chr1_1:59363628-59363647 None:intergenic 35.0%
CATAATCAGAACCGTTCAAA+AGG + chr1_1:59363662-59363681 None:intergenic 35.0%
CCATCTTTGTCTTCATATGT+TGG + chr1_1:59363687-59363706 None:intergenic 35.0%
CCAACATATGAAGACAAAGA+TGG - chr1_1:59363684-59363703 Msa0032320:intron 35.0%
ATGAAGACAAAGATGGTGAT+TGG - chr1_1:59363691-59363710 Msa0032320:intron 35.0%
ATGTGAGGTGAAAAAAAGAG+GGG + chr1_1:59363750-59363769 None:intergenic 35.0%
!! TGATGATGAATGGATTGGTT+CGG + chr1_1:59363825-59363844 None:intergenic 35.0%
! CGACTTAATCTGATGATGAA+TGG + chr1_1:59363835-59363854 None:intergenic 35.0%
! TGTTATGAGTTGGATTGGAT+TGG + chr1_1:59363911-59363930 None:intergenic 35.0%
! CAAAGTGTTATGAGTTGGAT+TGG + chr1_1:59363916-59363935 None:intergenic 35.0%
!! TTGCATTTTTCAACTGCTCT+TGG + chr1_1:59364161-59364180 None:intergenic 35.0%
! ATTTTTGTCGGAACACAACA+AGG + chr1_1:59364200-59364219 None:intergenic 35.0%
!! AACCAGAAGTGGATTTTTGT+CGG + chr1_1:59364212-59364231 None:intergenic 35.0%
ATGTTTCCAGTTATCATTGC+TGG - chr1_1:59364514-59364533 Msa0032320:five_prime_UTR 35.0%
ACAAATCCAGCAATGATAAC+TGG + chr1_1:59364523-59364542 None:intergenic 35.0%
! CTTGTCTGTCAAGTTGTAAA+TGG - chr1_1:59364685-59364704 Msa0032320:five_prime_UTR 35.0%
TAACAACAAGCACATGGTAT+GGG + chr1_1:59364756-59364775 None:intergenic 35.0%
!! ATACCATGTGCTTGTTGTTA+CGG - chr1_1:59364756-59364775 Msa0032320:five_prime_UTR 35.0%
! TGTTAATTGGTGGGTAGCAA+AGG - chr1_1:59360809-59360828 Msa0032320:three_prime_UTR 40.0%
GGATTATAAGGGGATTTGTC+GGG + chr1_1:59360928-59360947 None:intergenic 40.0%
TGTCAACATCTCCATCCATA+CGG - chr1_1:59360969-59360988 Msa0032320:three_prime_UTR 40.0%
! TATTTGGTGAAGGGGTTATG+GGG + chr1_1:59360998-59361017 None:intergenic 40.0%
! GTGCGTTTAGAAGATGGTTT+TGG + chr1_1:59361026-59361045 None:intergenic 40.0%
GCTTCTGTAGCTGAAAACAA+AGG - chr1_1:59361367-59361386 Msa0032320:CDS 40.0%
AGAAAAACTCACTTAGCACG+AGG + chr1_1:59361430-59361449 None:intergenic 40.0%
!!! GTTTTGTTTGAGGCTGAGAT+AGG - chr1_1:59361586-59361605 Msa0032320:intron 40.0%
TTGTGTGCAACACTATTGAG+GGG - chr1_1:59361630-59361649 Msa0032320:intron 40.0%
TATGGTAATCAATCAGGGCA+TGG - chr1_1:59362685-59362704 Msa0032320:intron 40.0%
!!! GATTTTTTCTGCGGATAGCA+TGG - chr1_1:59362848-59362867 Msa0032320:intron 40.0%
CATCAACGATCTTAATCGGA+TGG + chr1_1:59363170-59363189 None:intergenic 40.0%
AATTTGTAGGGCACAAGTTG+TGG - chr1_1:59363359-59363378 Msa0032320:intron 40.0%
ATTTGTAGGGCACAAGTTGT+GGG - chr1_1:59363360-59363379 Msa0032320:intron 40.0%
! TGGGAATGGAGCATTTGTTA+AGG - chr1_1:59363473-59363492 Msa0032320:intron 40.0%
! AGCATTTGTTAAGGTGAGCA+TGG - chr1_1:59363482-59363501 Msa0032320:intron 40.0%
TTTGTTAAGGTGAGCATGGA+TGG - chr1_1:59363486-59363505 Msa0032320:intron 40.0%
CCCACAATTGTCAATTGTGA+AGG + chr1_1:59363595-59363614 None:intergenic 40.0%
!! GATGATGAATGGATTGGTTC+GGG + chr1_1:59363824-59363843 None:intergenic 40.0%
AAGCGTCTTCGCATAATGAA+AGG - chr1_1:59364006-59364025 Msa0032320:intron 40.0%
TTCCGACAAAAATCCACTTC+TGG - chr1_1:59364207-59364226 Msa0032320:CDS 40.0%
GCAGATTTATCAACCAGAAG+TGG + chr1_1:59364223-59364242 None:intergenic 40.0%
! GTTGATAAATCTGCATCCCA+AGG - chr1_1:59364229-59364248 Msa0032320:CDS 40.0%
AGTAAGGTCGAGGCTAATAT+AGG - chr1_1:59364267-59364286 Msa0032320:CDS 40.0%
ATTATAAGTCAAGCACACGC+TGG + chr1_1:59364487-59364506 None:intergenic 40.0%
TGCCTTTAGATCCATGAACA+TGG - chr1_1:59364726-59364745 Msa0032320:five_prime_UTR 40.0%
CACCATGTTCATGGATCTAA+AGG + chr1_1:59364731-59364750 None:intergenic 40.0%
CTTTAGATCCATGAACATGG+TGG - chr1_1:59364729-59364748 Msa0032320:five_prime_UTR 40.0%
GTAACAACAAGCACATGGTA+TGG + chr1_1:59364757-59364776 None:intergenic 40.0%
! TTGGTGGGTAGCAAAGGAAA+AGG - chr1_1:59360815-59360834 Msa0032320:three_prime_UTR 45.0%
AAAGGAAAAGGCAGGCAAGT+AGG - chr1_1:59360827-59360846 Msa0032320:three_prime_UTR 45.0%
AAGGAAAAGGCAGGCAAGTA+GGG - chr1_1:59360828-59360847 Msa0032320:three_prime_UTR 45.0%
TTGTCGGGAAAATGAGGTCA+TGG + chr1_1:59360913-59360932 None:intergenic 45.0%
!! CGTGTATGGGTTTTGATGGT+TGG + chr1_1:59360949-59360968 None:intergenic 45.0%
!! GACACGTGTATGGGTTTTGA+TGG + chr1_1:59360953-59360972 None:intergenic 45.0%
GGAGATGTTGACACGTGTAT+GGG + chr1_1:59360962-59360981 None:intergenic 45.0%
TGGAGATGTTGACACGTGTA+TGG + chr1_1:59360963-59360982 None:intergenic 45.0%
! ATTTGGTGAAGGGGTTATGG+GGG + chr1_1:59360997-59361016 None:intergenic 45.0%
AAAACTCACTTAGCACGAGG+AGG + chr1_1:59361427-59361446 None:intergenic 45.0%
!! AAGTATTGGATGGTGGCTGA+AGG - chr1_1:59362785-59362804 Msa0032320:intron 45.0%
! TTTTCTGCGGATAGCATGGT+TGG - chr1_1:59362852-59362871 Msa0032320:intron 45.0%
GACTGCATGAATTTACGCAG+TGG + chr1_1:59363206-59363225 None:intergenic 45.0%
GCATAAATTCGTGCAGTCGA+TGG - chr1_1:59363263-59363282 Msa0032320:intron 45.0%
CAGTCGATGGTAGAGAATCT+TGG - chr1_1:59363276-59363295 Msa0032320:intron 45.0%
! GAAGCAGATAAGAGCACAAG+TGG - chr1_1:59363447-59363466 Msa0032320:intron 45.0%
! ATAAGAGCACAAGTGGTGGT+GGG - chr1_1:59363454-59363473 Msa0032320:intron 45.0%
TGGTGCACCATATCTACGTA+AGG - chr1_1:59363506-59363525 Msa0032320:intron 45.0%
TGCACCATATCTACGTAAGG+TGG - chr1_1:59363509-59363528 Msa0032320:intron 45.0%
AGGTCCACCTTACGTAGATA+TGG + chr1_1:59363516-59363535 None:intergenic 45.0%
GATGGTGATTGGATGCTTGT+TGG - chr1_1:59363702-59363721 Msa0032320:intron 45.0%
!! TGCTTGTTGGTGATGTTCCT+TGG - chr1_1:59363715-59363734 Msa0032320:intron 45.0%
!! GCTTGTTGGTGATGTTCCTT+GGG - chr1_1:59363716-59363735 Msa0032320:intron 45.0%
!! ATTGGTTCGGGTCAGATCAA+CGG + chr1_1:59363812-59363831 None:intergenic 45.0%
TCGCATAATGAAAGGTTCCG+AGG - chr1_1:59364014-59364033 Msa0032320:intron 45.0%
ATGAAAGGTTCCGAGGCAAT+TGG - chr1_1:59364021-59364040 Msa0032320:intron 45.0%
TGAAAGGTTCCGAGGCAATT+GGG - chr1_1:59364022-59364041 Msa0032320:intron 45.0%
TTTACCTAGCCCAATTGCCT+CGG + chr1_1:59364034-59364053 None:intergenic 45.0%
GCACATACTCTGTCACGTAT+TGG + chr1_1:59364568-59364587 None:intergenic 45.0%
!! CTTGTTGTTACGGCCTTCAA+TGG - chr1_1:59364766-59364785 Msa0032320:five_prime_UTR 45.0%
TTGTTACGGCCTTCAATGGA+GGG - chr1_1:59364770-59364789 Msa0032320:five_prime_UTR 45.0%
!! AATAAAAAAAAATAAAGTAT+TGG - chr1_1:59362771-59362790 Msa0032320:intron 5.0%
TGGGTAGCAAAGGAAAAGGC+AGG - chr1_1:59360819-59360838 Msa0032320:three_prime_UTR 50.0%
AGGAAAAGGCAGGCAAGTAG+GGG - chr1_1:59360829-59360848 Msa0032320:three_prime_UTR 50.0%
GGGGATTTGTCGGGAAAATG+AGG + chr1_1:59360919-59360938 None:intergenic 50.0%
TTATGGGGGAACCGTATGGA+TGG + chr1_1:59360983-59361002 None:intergenic 50.0%
TGGAAGACCGAGTCGTAACT+CGG + chr1_1:59361215-59361234 None:intergenic 50.0%
CTTCCAGGTGCATGTGATCA+CGG - chr1_1:59361229-59361248 Msa0032320:three_prime_UTR 50.0%
GGTAATCAATCAGGGCATGG+TGG - chr1_1:59362688-59362707 Msa0032320:intron 50.0%
AATCAATCAGGGCATGGTGG+AGG - chr1_1:59362691-59362710 Msa0032320:intron 50.0%
! TGGATGGTGGCTGAAGGAAT+AGG - chr1_1:59362791-59362810 Msa0032320:intron 50.0%
TGGTGGCTGAAGGAATAGGT+TGG - chr1_1:59362795-59362814 Msa0032320:intron 50.0%
! CGGATAGCATGGTTGGTTGT+CGG - chr1_1:59362859-59362878 Msa0032320:intron 50.0%
! GGATAGCATGGTTGGTTGTC+GGG - chr1_1:59362860-59362879 Msa0032320:intron 50.0%
GTGACACGCACACAAGACAA+GGG + chr1_1:59363004-59363023 None:intergenic 50.0%
! GCAGATAAGAGCACAAGTGG+TGG - chr1_1:59363450-59363469 Msa0032320:intron 50.0%
! GATAAGAGCACAAGTGGTGG+TGG - chr1_1:59363453-59363472 Msa0032320:intron 50.0%
TTGTGGGTCCCAAGTTACCA+AGG - chr1_1:59363608-59363627 Msa0032320:intron 50.0%
TGCATCCCAAGGAAGCAAGT+TGG - chr1_1:59364240-59364259 Msa0032320:CDS 50.0%
! TCGAGCCAACTTGCTTCCTT+GGG + chr1_1:59364248-59364267 None:intergenic 50.0%
!! GAAGCAAGTTGGCTCGAGTA+AGG - chr1_1:59364251-59364270 Msa0032320:CDS 50.0%
GTATGGGTCCACCATGTTCA+TGG + chr1_1:59364740-59364759 None:intergenic 50.0%
AGGCCGTAACAACAAGCACA+TGG + chr1_1:59364762-59364781 None:intergenic 50.0%
GTTGTTACGGCCTTCAATGG+AGG - chr1_1:59364769-59364788 Msa0032320:five_prime_UTR 50.0%
!! GTAGTGGATCCCTCCATTGA+AGG + chr1_1:59364782-59364801 None:intergenic 50.0%
GAGGAGACCGAGTTACGACT+CGG - chr1_1:59361205-59361224 Msa0032320:three_prime_UTR 55.0%
!! GAGTTACGACTCGGTCTTCC+AGG - chr1_1:59361214-59361233 Msa0032320:three_prime_UTR 55.0%
TCTCCGTGATCACATGCACC+TGG + chr1_1:59361235-59361254 None:intergenic 55.0%
ACTCACTTAGCACGAGGAGG+AGG + chr1_1:59361424-59361443 None:intergenic 55.0%
GGTGACACGCACACAAGACA+AGG + chr1_1:59363005-59363024 None:intergenic 55.0%
GTAGGGCACAAGTTGTGGGA+TGG - chr1_1:59363364-59363383 Msa0032320:intron 55.0%
!! AGCACAAGTGGTGGTGGGAA+TGG - chr1_1:59363459-59363478 Msa0032320:intron 55.0%
AAGAGGGGAACTCACTCCCA+AGG + chr1_1:59363735-59363754 None:intergenic 55.0%
! CTCGAGCCAACTTGCTTCCT+TGG + chr1_1:59364249-59364268 None:intergenic 55.0%
!! AGTTGGCTCGAGTAAGGTCG+AGG - chr1_1:59364257-59364276 Msa0032320:CDS 55.0%
AAAGGCAGGCAAGTAGGGGC+AGG - chr1_1:59360833-59360852 Msa0032320:three_prime_UTR 60.0%
GGGGTTATGGGGGAACCGTA+TGG + chr1_1:59360987-59361006 None:intergenic 60.0%
! GCACACAAGACAAGGGCGTG+TGG + chr1_1:59362997-59363016 None:intergenic 60.0%
CCAGCGCATCTGACAGCTCT+TGG + chr1_1:59363557-59363576 None:intergenic 60.0%
CCAAGAGCTGTCAGATGCGC+TGG - chr1_1:59363554-59363573 Msa0032320:intron 60.0%
GGTTCCGAGGCAATTGGGCT+AGG - chr1_1:59364027-59364046 Msa0032320:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59360691 59364854 59360691 ID=Msa0032320;Name=Msa0032320
chr1_1 mRNA 59360691 59364854 59360691 ID=Msa0032320-mRNA-1;Parent=Msa0032320;Name=Msa0032320-mRNA-1;_AED=0.22;_eAED=0.22;_QI=463|1|1|1|1|1|4|661|251
chr1_1 exon 59360691 59361389 59360691 ID=Msa0032320-mRNA-1:exon:18291;Parent=Msa0032320-mRNA-1
chr1_1 exon 59361497 59361558 59361497 ID=Msa0032320-mRNA-1:exon:18290;Parent=Msa0032320-mRNA-1
chr1_1 exon 59361806 59362177 59361806 ID=Msa0032320-mRNA-1:exon:18289;Parent=Msa0032320-mRNA-1
chr1_1 exon 59364108 59364854 59364108 ID=Msa0032320-mRNA-1:exon:18288;Parent=Msa0032320-mRNA-1
chr1_1 five_prime_UTR 59364392 59364854 59364392 ID=Msa0032320-mRNA-1:five_prime_utr;Parent=Msa0032320-mRNA-1
chr1_1 CDS 59364108 59364391 59364108 ID=Msa0032320-mRNA-1:cds;Parent=Msa0032320-mRNA-1
chr1_1 CDS 59361806 59362177 59361806 ID=Msa0032320-mRNA-1:cds;Parent=Msa0032320-mRNA-1
chr1_1 CDS 59361497 59361558 59361497 ID=Msa0032320-mRNA-1:cds;Parent=Msa0032320-mRNA-1
chr1_1 CDS 59361352 59361389 59361352 ID=Msa0032320-mRNA-1:cds;Parent=Msa0032320-mRNA-1
chr1_1 three_prime_UTR 59360691 59361351 59360691 ID=Msa0032320-mRNA-1:three_prime_utr;Parent=Msa0032320-mRNA-1
Gene Sequence

>Msa0032320

ATGACTAACGTTGGGGATGCAGAGAGAGACAAGTACAGCTTGATAAATTTTGAGGAGACCGAGTTACGACTCGGTCTTCCAGGTGCATGTGATCACGGAGAATCACCTGTTAAAAATAGTTGCGGAAAGAGAGGTTTCTCAGAAACTGCTAATGTTGATTTGAAGCTTAATCTTTCTCCTATAAATGATTCTGCTTCATCTTCTTCAACTATAGCTTCTGTAGCTGAAAACAAAGGCAAAGACACAACAACTTCTGCTACTGTTGCTCCTCCTCCTCGTGCTAAGGCACAAGTTGTGGGATGGCCACCAGTTAGATCCTTTAGAAAGAACATAGTAAATGTTCAAAAGAGCAATAATGAATCAGAAGCAGATAAGAGCACAAGTGGTGGTGGGAATGGAGCATTTGTTAAGGTGAGCATGGATGGTGCACCATATCTACGTAAGGTGGACCTTAAATTGTACAAGAGTTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCCTTCACAATTGACAATTGTGGGTCCCAAGTTACCAAGGACTTTATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAAATGTTTGTTCAATCGTGCAAGCGTCTTCGCATAATGAAAGGTTCCGAGGCAATTGGGCTAGCACCAAGAGCAGTTGAAAAATGCAAGAACAGAAGCTGA
Protein sequence

>Msa0032320

MTNVGDAERDKYSLINFEETELRLGLPGACDHGESPVKNSCGKRGFSETANVDLKLNLSPINDSASSSSTIASVAENKGKDTTTSATVAPPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEADKSTSGGGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS*