AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115090 MtrunA17_Chr1g0161371 99.496 595 3 0 1 595 1 595 0.0 1196
Msa0115090 MtrunA17_Chr8g0344311 87.521 601 66 4 1 595 1 598 0.0 986
Msa0115090 MtrunA17_Chr8g0391771 83.000 600 97 2 1 595 1 600 0.0 976
Msa0115090 MtrunA17_Chr2g0290411 47.920 553 246 9 52 582 13 545 1.61e-147 437
Msa0115090 MtrunA17_Chr4g0076251 48.785 535 249 6 51 568 25 551 1.11e-146 436
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115090 AT1G68060.1 75.490 612 123 9 1 592 1 605 0.0 892
Msa0115090 AT1G24764.1 74.554 617 131 7 1 592 1 616 0.0 884
Msa0115090 AT1G24764.3 74.554 617 131 7 1 592 60 675 0.0 882
Msa0115090 AT1G14840.1 73.266 591 143 8 9 592 5 587 0.0 817
Msa0115090 AT2G01750.2 74.871 581 132 8 21 592 37 612 0.0 815
Msa0115090 AT2G01750.1 74.871 581 132 8 21 592 37 612 0.0 815
Msa0115090 AT1G14840.2 70.897 591 142 9 9 592 5 572 0.0 775
Msa0115090 AT1G24764.2 79.741 464 90 3 132 592 1 463 0.0 739
Msa0115090 AT4G17220.1 47.104 518 234 9 52 566 6 486 1.54e-135 405

Find 146 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAGGCGGATGATAAT+TGG 0.234084 1_3:-33669846 Msa0115090:CDS
TGGTTCTGAGCACTGTTTAC+AGG 0.234770 1_3:+33669406 None:intergenic
CGAAGCAATTCTTGCTCCTT+TGG 0.241876 1_3:-33671315 Msa0115090:CDS
CTTTGGTTTCTTCGAAAGAT+TGG 0.272973 1_3:+33669869 None:intergenic
TTCAAGTAGTGCAGCTTCTT+TGG 0.279011 1_3:+33671092 None:intergenic
TTCTAGCTCCCTCACAGTTT+GGG 0.281893 1_3:+33670806 None:intergenic
TGCCTCAACTTCCATGGCTT+TGG 0.286023 1_3:+33669534 None:intergenic
CTTCTAGCTCCCTCACAGTT+TGG 0.287805 1_3:+33670805 None:intergenic
ATCATCCGCCTCTCTCTCTT+TGG 0.291625 1_3:+33669852 None:intergenic
ATCTCAAAATTAACCTCTAA+TGG 0.292039 1_3:-33670057 Msa0115090:CDS
TACCCTGTTTGCTGTTACCT+TGG 0.315274 1_3:+33670583 None:intergenic
TGAGGGGATGGTGTTCTCTT+AGG 0.322150 1_3:+33670027 None:intergenic
TCTCTAAACGATCCAGAAAA+TGG 0.341450 1_3:+33674841 None:intergenic
CTGAGTGATTGTGACTTGTT+TGG 0.344504 1_3:+33675219 None:intergenic
CTTAGGCAAGAATCCATTAG+AGG 0.344932 1_3:+33670044 None:intergenic
GATAATTGGAAAGGAAATTC+AGG 0.351491 1_3:-33669832 Msa0115090:CDS
TAGTGCAGCTTCTTTGGATT+TGG 0.353315 1_3:+33671098 None:intergenic
AAAGCGGTTCAGCAATATAA+AGG 0.353628 1_3:-33669431 Msa0115090:CDS
TCAATATTGAGCTAGATGAT+AGG 0.359640 1_3:+33669992 None:intergenic
ATCATCCACCATGGAGGCCT+TGG 0.362971 1_3:+33671041 None:intergenic
CTAGAAGAGTCAGTCCTTGC+AGG 0.368346 1_3:-33670789 Msa0115090:CDS
CAGTGAAAGTGGAGCTTAAT+CGG 0.377411 1_3:-33674729 Msa0115090:CDS
TCAGGAAGAAAACAAAATCT+TGG 0.381761 1_3:-33670871 Msa0115090:intron
TTCCGCTAGACAGCAGAGTA+TGG 0.386039 1_3:-33674791 Msa0115090:CDS
TGAAGAGCGACGATTCTTGC+AGG 0.386203 1_3:-33670495 Msa0115090:intron
CATGAATTTGTTGCACGGTT+CGG 0.387547 1_3:-33674755 Msa0115090:CDS
TCTGCCGGTGGGAAGTCATT+TGG 0.398268 1_3:+33669802 None:intergenic
CTTCTTTGCCTCAACTTCCA+TGG 0.400320 1_3:+33669528 None:intergenic
AGATAAGGATAGAGAATTAT+CGG 0.413036 1_3:-33674593 Msa0115090:CDS
TGAGTGATTGTGACTTGTTT+GGG 0.421702 1_3:+33675220 None:intergenic
GTGCCAAGGTAACAGCAAAC+AGG 0.425792 1_3:-33670586 Msa0115090:CDS
GAAGAGCTGTCAAAGGTTGA+TGG 0.434615 1_3:-33671581 Msa0115090:CDS
TGCCTTGGCCAAGGCCTCCA+TGG 0.436711 1_3:-33671049 Msa0115090:CDS
ACGGCGATGGAGGAGATTTA+CGG 0.436994 1_3:-33674892 Msa0115090:exon
TCTTCAAGCCATTGTTTGAC+AGG 0.444366 1_3:+33670512 None:intergenic
AGCAATTCTTGCTCCTTTGG+AGG 0.447816 1_3:-33671312 Msa0115090:CDS
TCAATTGCGGCTCAAAGTGC+TGG 0.456627 1_3:-33670187 Msa0115090:CDS
ATATGACCTCTTGCAGAAAG+AGG 0.460005 1_3:-33669752 Msa0115090:CDS
TGTTCAGTTTGCCTTGGCCA+AGG 0.461756 1_3:-33671058 Msa0115090:CDS
TATCAACTCCACCTAGTGAT+TGG 0.463068 1_3:+33670082 None:intergenic
CGGAGGAGCGGTGGCGACTC+CGG 0.465713 1_3:-33674866 Msa0115090:CDS
CGATTAAGCTCCACTTTCAC+TGG 0.472787 1_3:+33674730 None:intergenic
TTGAGGCAAAGAAGATGAGA+AGG 0.474623 1_3:-33669519 Msa0115090:CDS
AAGTGCTGGAGGAGAGTTTG+AGG 0.474656 1_3:-33670173 Msa0115090:CDS
AAAACACTTAATAGAGAGTT+GGG 0.481831 1_3:-33670611 Msa0115090:CDS
TGATGGGAAGCTAAAATTAA+CGG 0.487466 1_3:-33671564 Msa0115090:CDS
ATAGGGATGACCTGAGTTGA+GGG 0.487512 1_3:+33670010 None:intergenic
AAAGACTGTTCAGTTTGCCT+TGG 0.487825 1_3:-33671064 Msa0115090:CDS
GGTTCTGAGCACTGTTTACA+GGG 0.494170 1_3:+33669407 None:intergenic
CTGTCAGATGTTAGCAAGGA+AGG 0.496607 1_3:-33669569 Msa0115090:intron
CACCATGGAGGCCTTGGCCA+AGG 0.496680 1_3:+33671047 None:intergenic
TGATGAAAAGAAAGCATCAA+TGG 0.497269 1_3:-33671411 Msa0115090:CDS
CTGTTGTGGTTGCAAATGAA+TGG 0.501031 1_3:-33670559 Msa0115090:CDS
GTCGTTGCCTTGAGGAAAGC+TGG 0.505078 1_3:-33669730 Msa0115090:CDS
GGAAGTAGCTTCCATGGAAA+AGG 0.509920 1_3:-33669497 Msa0115090:CDS
CAATATTGAGCTAGATGATA+GGG 0.513491 1_3:+33669993 None:intergenic
AAACTAAACACTAACCTCAA+TGG 0.514146 1_3:+33669669 None:intergenic
TCAATATTGAGGAGTGCTAA+AGG 0.517695 1_3:-33669979 Msa0115090:CDS
TGAGGCAAAGAAGATGAGAA+GGG 0.522446 1_3:-33669518 Msa0115090:CDS
TGATGGTGGCTCAAGGACAC+TGG 0.523950 1_3:-33669941 Msa0115090:CDS
GACACTGGAAAGAAGTAAAA+CGG 0.525209 1_3:-33669926 Msa0115090:CDS
AAGCGGTTCAGCAATATAAA+GGG 0.526321 1_3:-33669430 Msa0115090:CDS
GAGAAGGGAAGTAGCTTCCA+TGG 0.527885 1_3:-33669503 Msa0115090:CDS
TCTTCTCGTCGCCAATCACT+AGG 0.528739 1_3:-33670093 Msa0115090:CDS
GAATTTGAATGCGCGAGTGA+GGG 0.529120 1_3:-33674930 Msa0115090:five_prime_UTR
AGCAAACAGGGTAGCTGTTG+TGG 0.529953 1_3:-33670573 Msa0115090:CDS
CGGTTCGGATCCAGTGAAAG+TGG 0.533833 1_3:-33674740 Msa0115090:CDS
GAGGGTCCATGCTGCTCAGA+AGG 0.534386 1_3:-33671357 Msa0115090:CDS
GGACAGAATGCATAGACAAA+AGG 0.539722 1_3:-33670850 Msa0115090:CDS
TATCATCTAGCTCAATATTG+AGG 0.541720 1_3:-33669990 Msa0115090:CDS
GAAACAGATTGAGATTTGCC+AGG 0.542161 1_3:-33670992 Msa0115090:intron
TTGCAGCAGAAGCTACTCTT+CGG 0.548174 1_3:-33671379 Msa0115090:CDS
TTGCTGCTGCACCACCTGCA+AGG 0.548940 1_3:+33670775 None:intergenic
TCGTTTCAGATCGACGGCGA+TGG 0.553339 1_3:-33674905 Msa0115090:exon
TGGTTGAATGAGTAACTTTG+AGG 0.553498 1_3:+33669889 None:intergenic
AAGAGCTGTCAAAGGTTGAT+GGG 0.554635 1_3:-33671580 Msa0115090:CDS
AACGATCCAGAAAATGGTGC+CGG 0.555391 1_3:+33674847 None:intergenic
AGATAAAGATGATGCCATTG+AGG 0.555603 1_3:-33669683 Msa0115090:intron
AGTAGTCGCAGCACCGCAGA+GGG 0.555775 1_3:-33670135 Msa0115090:CDS
TGTTTGCTGTTACCTTGGCA+CGG 0.558804 1_3:+33670588 None:intergenic
AGCTTTAGTTCAGCCTCCAA+AGG 0.559013 1_3:+33671299 None:intergenic
AGGCTGAACTAAAGCTTGCT+CGG 0.559493 1_3:-33671292 Msa0115090:CDS
GCATAGACAAAAGGTGGCAG+AGG 0.560586 1_3:-33670841 Msa0115090:CDS
AAGAAGTAAAACGGTGCTGA+GGG 0.563039 1_3:-33669917 Msa0115090:CDS
AGGGTTTCGTTTCAGATCGA+CGG 0.563160 1_3:-33674911 Msa0115090:five_prime_UTR
GATAGGGATGACCTGAGTTG+AGG 0.563988 1_3:+33670009 None:intergenic
GCTGTCTGAAGAGCTGTCAA+AGG 0.567280 1_3:-33671588 Msa0115090:CDS
TAGAGAGTTGGGCCGTGCCA+AGG 0.567676 1_3:-33670600 Msa0115090:CDS
ATACTATCCTCTGTATCTGC+CGG 0.568717 1_3:+33669787 None:intergenic
GGAGCAAGAATTGCTTCGAT+CGG 0.572832 1_3:+33671320 None:intergenic
CGAAGAAACCAAAGAGAGAG+AGG 0.574885 1_3:-33669860 Msa0115090:CDS
AGAATTTGAATGCGCGAGTG+AGG 0.579102 1_3:-33674931 Msa0115090:five_prime_UTR
GAACACCATCCCCTCAACTC+AGG 0.581720 1_3:-33670020 Msa0115090:CDS
AGTGCTGGAGGAGAGTTTGA+GGG 0.584451 1_3:-33670172 Msa0115090:CDS
CAGCAGAAGCTACTCTTCGG+AGG 0.586254 1_3:-33671376 Msa0115090:CDS
GACCAAAGCCATGGAAGTTG+AGG 0.587168 1_3:-33669536 Msa0115090:CDS
CGGCTTGAGAATGAAGTTCG+AGG 0.589218 1_3:-33674709 Msa0115090:intron
GCAAGAATTGCTTCGATCGG+AGG 0.593352 1_3:+33671323 None:intergenic
TTCATGACCAGCTTTCCTCA+AGG 0.597013 1_3:+33669723 None:intergenic
ATCCATACTCTGCTGTCTAG+CGG 0.597253 1_3:+33674789 None:intergenic
CAACGACCTCTTTCTGCAAG+AGG 0.600338 1_3:+33669746 None:intergenic
CTATCCTCTGTATCTGCCGG+TGG 0.602400 1_3:+33669790 None:intergenic
CAGTAGTCGCAGCACCGCAG+AGG 0.603621 1_3:-33670136 Msa0115090:CDS
CATCATCCTTCTGAGCAGCA+TGG 0.604557 1_3:+33671351 None:intergenic
TTTCAGATCGACGGCGATGG+AGG 0.606162 1_3:-33674902 Msa0115090:exon
GTTCATACTTCTTCCCTCTG+CGG 0.608964 1_3:+33670122 None:intergenic
GATGACCTGAGTTGAGGGGA+TGG 0.611124 1_3:+33670015 None:intergenic
AAGCGTTGAGGCATTCTGAA+CGG 0.613362 1_3:-33674552 Msa0115090:CDS
CAGAATGCATAGACAAAAGG+TGG 0.613852 1_3:-33670847 Msa0115090:CDS
CTTCCCACCGGCAGATACAG+AGG 0.614204 1_3:-33669794 Msa0115090:CDS
CTTGGCCAAGGCCTCCATGG+TGG 0.617740 1_3:-33671046 Msa0115090:CDS
AAGAGGTCATATAAAACACT+TGG 0.618174 1_3:+33669763 None:intergenic
AGCAGAAGCTACTCTTCGGA+GGG 0.619468 1_3:-33671375 Msa0115090:CDS
ACTAAAGCTTGCTCGGCAAG+AGG 0.620295 1_3:-33671285 Msa0115090:intron
AAAGAAGTAAAACGGTGCTG+AGG 0.622180 1_3:-33669918 Msa0115090:CDS
TTACGGCGACGGAGGAGCGG+TGG 0.622998 1_3:-33674875 Msa0115090:CDS
AAGTCATGCCTGTCAAACAA+TGG 0.623263 1_3:-33670520 Msa0115090:CDS
GAGGCGGATGATAATTGGAA+AGG 0.624926 1_3:-33669841 Msa0115090:CDS
AGATACGTTGACCAAAGCCA+TGG 0.625101 1_3:-33669545 Msa0115090:CDS
AGAAAGAGGTCGTTGCCTTG+AGG 0.625269 1_3:-33669738 Msa0115090:CDS
GAGGAGATTTACGGCGACGG+AGG 0.631996 1_3:-33674883 Msa0115090:CDS
GTGCTGGAGGAGAGTTTGAG+GGG 0.632505 1_3:-33670171 Msa0115090:CDS
TTATCTGTCAGATGTTAGCA+AGG 0.633097 1_3:-33669573 Msa0115090:intron
AAAGCTCACCCAAACTGTGA+GGG 0.633154 1_3:-33670814 Msa0115090:CDS
GAGTTCATGAATTTGTTGCA+CGG 0.637392 1_3:-33674760 Msa0115090:CDS
AGTAGCTTCCATGGAAAAGG+AGG 0.639443 1_3:-33669494 Msa0115090:CDS
TGCCAAGGTAACAGCAAACA+GGG 0.644482 1_3:-33670585 Msa0115090:CDS
GATTTACGGCGACGGAGGAG+CGG 0.644818 1_3:-33674878 Msa0115090:CDS
ATGCAGTTAGAGATTATCAA+CGG 0.649753 1_3:-33670752 Msa0115090:CDS
TATCCTCTGTATCTGCCGGT+GGG 0.651445 1_3:+33669791 None:intergenic
GAAGAGTCAGTCCTTGCAGG+TGG 0.658177 1_3:-33670786 Msa0115090:CDS
AAAAGCTCACCCAAACTGTG+AGG 0.659214 1_3:-33670815 Msa0115090:CDS
ATGGAGGAGATTTACGGCGA+CGG 0.663204 1_3:-33674886 Msa0115090:CDS
AAGCTGAGATTAAAGCGTTG+AGG 0.667550 1_3:-33674564 Msa0115090:CDS
AGAACTTCGTCGAGGAGACG+CGG 0.670647 1_3:-33674814 Msa0115090:CDS
TAAGCCAAATGACTTCCCAC+CGG 0.676407 1_3:-33669806 Msa0115090:CDS
AGTTTGAGGGGAAATTCTAG+CGG 0.678639 1_3:-33670159 Msa0115090:CDS
TCTCGTCGCCAATCACTAGG+TGG 0.679433 1_3:-33670090 Msa0115090:CDS
AGAAACCAAAGAGAGAGAGG+CGG 0.681897 1_3:-33669857 Msa0115090:CDS
TTGGAGATCATCCACCATGG+AGG 0.683506 1_3:+33671035 None:intergenic
GAGGGAAGAAGTATGAACAA+TGG 0.689751 1_3:-33670117 Msa0115090:CDS
ATTGCGGCTCAAAGTGCTGG+AGG 0.694049 1_3:-33670184 Msa0115090:CDS
TACAAGAGAACAGAGCAAAG+CGG 0.698034 1_3:-33669447 Msa0115090:CDS
GAGAAGGTAGAACTTCGTCG+AGG 0.703512 1_3:-33674822 Msa0115090:CDS
AGAAGTAAAACGGTGCTGAG+GGG 0.712185 1_3:-33669916 Msa0115090:CDS
TAGGGATGACCTGAGTTGAG+GGG 0.734547 1_3:+33670011 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACATAATAAACAAA+TGG + chr1_3:33670369-33670388 None:intergenic 10.0%
!! AAAATATTAAAAGAAAAGAA+GGG + chr1_3:33671249-33671268 None:intergenic 10.0%
!! TAAAATATTAAAAGAAAAGA+AGG + chr1_3:33671250-33671269 None:intergenic 10.0%
!!! ATTATAACATTAATTTTACA+TGG - chr1_3:33673962-33673981 Msa0115090:intron 10.0%
!!! TATTAATTGTTTCTTTTTTT+TGG - chr1_3:33674977-33674996 Msa0115090:five_prime_UTR 10.0%
!!! ATTAATTGTTTCTTTTTTTT+GGG - chr1_3:33674978-33674997 Msa0115090:five_prime_UTR 10.0%
!!! TTCTCAATTGTTGTTATTTT+TGG - chr1_3:33670131-33670150 Msa0115090:CDS 20.0%
!! TTGTTACTATCTATGATATA+TGG - chr1_3:33670186-33670205 Msa0115090:CDS 20.0%
!!! TTTTTTTTTGGGAGTTTATT+TGG - chr1_3:33670386-33670405 Msa0115090:intron 20.0%
!!! ATATTTTTAATTAGTGCTCT+TGG - chr1_3:33671102-33671121 Msa0115090:CDS 20.0%
!!! AATCGTGTTATTCTTATTAA+AGG - chr1_3:33671366-33671385 Msa0115090:CDS 20.0%
!!! ATCGTGTTATTCTTATTAAA+GGG - chr1_3:33671367-33671386 Msa0115090:CDS 20.0%
!! AAAAAATATTTCCCCATAAT+AGG - chr1_3:33671684-33671703 Msa0115090:intron 20.0%
!! CAACACAACATTTAATATTT+GGG + chr1_3:33672165-33672184 None:intergenic 20.0%
!! TCAACACAACATTTAATATT+TGG + chr1_3:33672166-33672185 None:intergenic 20.0%
!! TAATTACTGAAGTTGAATTA+GGG + chr1_3:33673119-33673138 None:intergenic 20.0%
!! ATAATTACTGAAGTTGAATT+AGG + chr1_3:33673120-33673139 None:intergenic 20.0%
!! AATATAAACTCAAAAGAACA+AGG + chr1_3:33673370-33673389 None:intergenic 20.0%
!! TTATAATCAATAAAGCAACT+GGG + chr1_3:33673949-33673968 None:intergenic 20.0%
!!! TGTTTGTTTTTGTGTAGATA+AGG - chr1_3:33670016-33670035 Msa0115090:CDS 25.0%
! AGATAAGGATAGAGAATTAT+CGG - chr1_3:33670031-33670050 Msa0115090:CDS 25.0%
! TAATCGCTAATTTACATGTT+GGG - chr1_3:33670597-33670616 Msa0115090:CDS 25.0%
! TCACTTAAAAGACAAACAAA+TGG + chr1_3:33670751-33670770 None:intergenic 25.0%
!!! ATTTGTTTGTCTTTTAAGTG+AGG - chr1_3:33670750-33670769 Msa0115090:CDS 25.0%
!!! TTTGTTTGTCTTTTAAGTGA+GGG - chr1_3:33670751-33670770 Msa0115090:CDS 25.0%
! AAATTGCACAAAAATGTGAA+AGG + chr1_3:33670838-33670857 None:intergenic 25.0%
! GAAACTGTCTCATATAAATT+TGG - chr1_3:33670887-33670906 Msa0115090:intron 25.0%
!! TCTTTTAGCATATCAACTAT+CGG + chr1_3:33671019-33671038 None:intergenic 25.0%
! AATTAATGCTTCATAGGATT+TGG + chr1_3:33671300-33671319 None:intergenic 25.0%
! AAGTCTAATTAATGCTTCAT+AGG + chr1_3:33671306-33671325 None:intergenic 25.0%
! AATCTCAAGACTTGATTTAT+AGG + chr1_3:33671507-33671526 None:intergenic 25.0%
!!! TTCAACTGTTTTATTCTTAG+AGG - chr1_3:33671525-33671544 Msa0115090:intron 25.0%
!! AAATGAAAAGCTTTGATATG+TGG - chr1_3:33672084-33672103 Msa0115090:intron 25.0%
!! AGTAAATTTTTCTTCTAAGC+TGG + chr1_3:33672125-33672144 None:intergenic 25.0%
!!! ATTTGGGTTGTATTATAGTT+TGG + chr1_3:33672149-33672168 None:intergenic 25.0%
! TGAATCATTGAAGTGAAAAT+TGG - chr1_3:33672251-33672270 Msa0115090:intron 25.0%
! GAATCATTGAAGTGAAAATT+GGG - chr1_3:33672252-33672271 Msa0115090:intron 25.0%
!!! AAAAGATGAGAGTTTTGTAT+TGG - chr1_3:33672293-33672312 Msa0115090:intron 25.0%
!!! AAAGATGAGAGTTTTGTATT+GGG - chr1_3:33672294-33672313 Msa0115090:intron 25.0%
! TCTAATCTCTCCTAATTATT+TGG + chr1_3:33672424-33672443 None:intergenic 25.0%
! CTATCATTGAATTTGATTCA+TGG - chr1_3:33672454-33672473 Msa0115090:intron 25.0%
!!! TAGTTTTTGAGAAGATAGTA+AGG - chr1_3:33672626-33672645 Msa0115090:intron 25.0%
! ACTCCTAATCCTAAATAAAT+AGG - chr1_3:33672681-33672700 Msa0115090:intron 25.0%
! CTCCTAATCCTAAATAAATA+GGG - chr1_3:33672682-33672701 Msa0115090:intron 25.0%
!! TTCCCTATTTATTTAGGATT+AGG + chr1_3:33672687-33672706 None:intergenic 25.0%
! AAAGGTCAATGTCAAATAAA+CGG + chr1_3:33672890-33672909 None:intergenic 25.0%
! ACATGAAATGTAACTTATCT+TGG - chr1_3:33672993-33673012 Msa0115090:intron 25.0%
! CAGTAATTATTTGTGTTCTT+AGG - chr1_3:33673130-33673149 Msa0115090:intron 25.0%
! TAATTATTTGTGTTCTTAGG+TGG - chr1_3:33673133-33673152 Msa0115090:intron 25.0%
!! TGTAATCATGCAACTTTTAA+CGG - chr1_3:33673710-33673729 Msa0115090:intron 25.0%
! GTTATAATCAATAAAGCAAC+TGG + chr1_3:33673950-33673969 None:intergenic 25.0%
! TGGTTTATTTCACATTCTTT+AGG - chr1_3:33673982-33674001 Msa0115090:intron 25.0%
! AAAAACACTTAATAGAGAGT+TGG - chr1_3:33674012-33674031 Msa0115090:intron 25.0%
! AAAACACTTAATAGAGAGTT+GGG - chr1_3:33674013-33674032 Msa0115090:intron 25.0%
! TTATTGAACTGCATTCTTAT+AGG - chr1_3:33674250-33674269 Msa0115090:intron 25.0%
! TATTGAACTGCATTCTTATA+GGG - chr1_3:33674251-33674270 Msa0115090:intron 25.0%
! TTCAGGAAAAATATCAATTG+CGG - chr1_3:33674424-33674443 Msa0115090:intron 25.0%
! ATCTCAAAATTAACCTCTAA+TGG - chr1_3:33674567-33674586 Msa0115090:CDS 25.0%
! CAATTATCAATAAGATGTCA+AGG + chr1_3:33675011-33675030 None:intergenic 25.0%
! TGTTTTCTCTCTCTAGATTA+AGG + chr1_3:33669534-33669553 None:intergenic 30.0%
AATTCAGCTGAAAAACTCTT+CGG + chr1_3:33669960-33669979 None:intergenic 30.0%
TAACTTATGTCTGTAAGACT+TGG - chr1_3:33670432-33670451 Msa0115090:intron 30.0%
GTAATCGCTAATTTACATGT+TGG - chr1_3:33670596-33670615 Msa0115090:CDS 30.0%
AGGAATTGAGCTTGTAAATA+TGG - chr1_3:33670631-33670650 Msa0115090:intron 30.0%
!! GGTACTATTATTTTGTTTCC+TGG - chr1_3:33670652-33670671 Msa0115090:intron 30.0%
!! ACTATTATTTTGTTTCCTGG+TGG - chr1_3:33670655-33670674 Msa0115090:intron 30.0%
!! CTATTATTTTGTTTCCTGGT+GGG - chr1_3:33670656-33670675 Msa0115090:intron 30.0%
ACTGAGAAACTTTCCTTATA+TGG + chr1_3:33670967-33670986 None:intergenic 30.0%
GATAATGTCAAACGTAAAGT+TGG + chr1_3:33671331-33671350 None:intergenic 30.0%
!! TGTTGACTTCTTGATACTAT+CGG - chr1_3:33671455-33671474 Msa0115090:intron 30.0%
GAACCAATACAAAAAGATGA+TGG + chr1_3:33671734-33671753 None:intergenic 30.0%
!!! CATCTTTTTGTATTGGTTCT+CGG - chr1_3:33671735-33671754 Msa0115090:intron 30.0%
AGGGAAAAAAATGGAAAGTT+AGG - chr1_3:33671837-33671856 Msa0115090:intron 30.0%
AAAAATGGAAAGTTAGGACA+TGG - chr1_3:33671843-33671862 Msa0115090:intron 30.0%
! GAAAATTTAAAGAGAGCGTA+TGG - chr1_3:33671901-33671920 Msa0115090:intron 30.0%
! ACAATTTTCACCTCAAAACT+AGG + chr1_3:33671956-33671975 None:intergenic 30.0%
GTCTCTATCATATGTATAGT+GGG + chr1_3:33672017-33672036 None:intergenic 30.0%
TGTCTCTATCATATGTATAG+TGG + chr1_3:33672018-33672037 None:intergenic 30.0%
TAAACTAGAAGATACAAGCA+AGG - chr1_3:33672048-33672067 Msa0115090:intron 30.0%
!! TTGAGATGAGAGTATTATGA+TGG - chr1_3:33672223-33672242 Msa0115090:intron 30.0%
AGGAAACTAGCAAATTAGTA+GGG + chr1_3:33672554-33672573 None:intergenic 30.0%
AAGGAAACTAGCAAATTAGT+AGG + chr1_3:33672555-33672574 None:intergenic 30.0%
TCTCATTTACTCAAAGACTA+AGG + chr1_3:33672574-33672593 None:intergenic 30.0%
GTCTTATATCCCTATACATA+GGG + chr1_3:33672663-33672682 None:intergenic 30.0%
! AGTCTTATATCCCTATACAT+AGG + chr1_3:33672664-33672683 None:intergenic 30.0%
CCTGATTTCCCTATTTATTT+AGG + chr1_3:33672693-33672712 None:intergenic 30.0%
CCTAAATAAATAGGGAAATC+AGG - chr1_3:33672690-33672709 Msa0115090:intron 30.0%
TTGATATTATGTCAGTGTCT+TGG + chr1_3:33672810-33672829 None:intergenic 30.0%
AAAAAGTTTACGCATGATAG+AGG + chr1_3:33672915-33672934 None:intergenic 30.0%
TGATGGGAAGCTAAAATTAA+CGG - chr1_3:33673060-33673079 Msa0115090:intron 30.0%
!! TGATGAAAAGAAAGCATCAA+TGG - chr1_3:33673213-33673232 Msa0115090:intron 30.0%
TGAGTTTATATTGCAATACC+TGG - chr1_3:33673378-33673397 Msa0115090:intron 30.0%
! GGCATATGACTAATGATTTT+TGG - chr1_3:33673431-33673450 Msa0115090:intron 30.0%
TTGTAGTTTAGCAATCTGTA+GGG + chr1_3:33673478-33673497 None:intergenic 30.0%
!! TCAGCTCTTGATTTTTGTTT+TGG + chr1_3:33673611-33673630 None:intergenic 30.0%
TCAGGAAGAAAACAAAATCT+TGG - chr1_3:33673753-33673772 Msa0115090:intron 30.0%
ATGCAGTTAGAGATTATCAA+CGG - chr1_3:33673872-33673891 Msa0115090:intron 30.0%
ATTTAGGTGAAGACAAAGAA+AGG + chr1_3:33674216-33674235 None:intergenic 30.0%
ATTGAACTGCATTCTTATAG+GGG - chr1_3:33674252-33674271 Msa0115090:intron 30.0%
CACAATTGAAAGTAATGATC+TGG - chr1_3:33674333-33674352 Msa0115090:intron 30.0%
!!! AATTTCAGAACTAGTTTTCG+AGG + chr1_3:33674374-33674393 None:intergenic 30.0%
CAATATTGAGCTAGATGATA+GGG + chr1_3:33674634-33674653 None:intergenic 30.0%
TCAATATTGAGCTAGATGAT+AGG + chr1_3:33674635-33674654 None:intergenic 30.0%
! TATCATCTAGCTCAATATTG+AGG - chr1_3:33674634-33674653 Msa0115090:intron 30.0%
! GGAACATCTAAATCTTTTGA+TGG - chr1_3:33674666-33674685 Msa0115090:intron 30.0%
! ACATCTAAATCTTTTGATGG+TGG - chr1_3:33674669-33674688 Msa0115090:intron 30.0%
GATAATTGGAAAGGAAATTC+AGG - chr1_3:33674792-33674811 Msa0115090:CDS 30.0%
AAGAGGTCATATAAAACACT+TGG + chr1_3:33674864-33674883 None:intergenic 30.0%
! TGGCATCATCTTTATCTTTT+AGG + chr1_3:33674938-33674957 None:intergenic 30.0%
AAACTAAACACTAACCTCAA+TGG + chr1_3:33674958-33674977 None:intergenic 30.0%
!! TGAGTGATTGTGACTTGTTT+GGG + chr1_3:33669407-33669426 None:intergenic 35.0%
TCTCTAAACGATCCAGAAAA+TGG + chr1_3:33669786-33669805 None:intergenic 35.0%
! TTTTCTGGATCGTTTAGAGA+AGG - chr1_3:33669786-33669805 Msa0115090:CDS 35.0%
!! GAGTTCATGAATTTGTTGCA+CGG - chr1_3:33669864-33669883 Msa0115090:CDS 35.0%
TTCAATGTAATCCCATGTGT+CGG - chr1_3:33670266-33670285 Msa0115090:intron 35.0%
!! AATGCTGAGATTTGTTAGGT+TGG - chr1_3:33670474-33670493 Msa0115090:intron 35.0%
!!! GTTAGGTTGGATATTTTTCG+TGG - chr1_3:33670487-33670506 Msa0115090:intron 35.0%
AAAACTCACACACACACAAA+GGG + chr1_3:33670538-33670557 None:intergenic 35.0%
AAAAACTCACACACACACAA+AGG + chr1_3:33670539-33670558 None:intergenic 35.0%
! TTGTGTGTGTGTGAGTTTTT+AGG - chr1_3:33670539-33670558 Msa0115090:CDS 35.0%
GCAACTTCAAAGTTCAAACA+TGG + chr1_3:33670703-33670722 None:intergenic 35.0%
TTGAAGTTGCAGCTGAAAAA+TGG - chr1_3:33670713-33670732 Msa0115090:intron 35.0%
TGAAGTTGCAGCTGAAAAAT+GGG - chr1_3:33670714-33670733 Msa0115090:intron 35.0%
!! TTTGTCTTTTAAGTGAGGGA+GGG - chr1_3:33670755-33670774 Msa0115090:CDS 35.0%
! GTATCGATGCAAATGTCAAA+AGG + chr1_3:33670803-33670822 None:intergenic 35.0%
!! TGTGTTGACTTGACCATATA+AGG - chr1_3:33670951-33670970 Msa0115090:intron 35.0%
! AATGCTTCATAGGATTTGGT+TGG + chr1_3:33671296-33671315 None:intergenic 35.0%
AGGGAGGATAAAGGAATAAA+AGG + chr1_3:33671394-33671413 None:intergenic 35.0%
TTTATTCCTTTATCCTCCCT+TGG - chr1_3:33671394-33671413 Msa0115090:CDS 35.0%
! TTGCATTCACTCTTAGTTCT+AGG - chr1_3:33671428-33671447 Msa0115090:CDS 35.0%
GTTGTGCTTGTATAGAGAAA+AGG - chr1_3:33671627-33671646 Msa0115090:intron 35.0%
! GAGCCATCATCTTTTTGTAT+TGG - chr1_3:33671728-33671747 Msa0115090:intron 35.0%
GCTAATTGTTCCTATCTAAG+AGG - chr1_3:33671761-33671780 Msa0115090:intron 35.0%
! TGACACAATGAATGCTTTTG+TGG - chr1_3:33671787-33671806 Msa0115090:intron 35.0%
! TGATATAGTCTTAGAGTGCA+CGG - chr1_3:33671811-33671830 Msa0115090:intron 35.0%
!!! ACTCACAAATCCTAGTTTTG+AGG - chr1_3:33671943-33671962 Msa0115090:intron 35.0%
!! AAAGGTACTTAAGAGACATG+TGG + chr1_3:33671992-33672011 None:intergenic 35.0%
!! TCATATGTATAGTGGGCAAA+AGG + chr1_3:33672010-33672029 None:intergenic 35.0%
! GTTTTGTATTGGGTCTTACT+TGG - chr1_3:33672304-33672323 Msa0115090:intron 35.0%
TATTGGGTCTTACTTGGTTT+GGG - chr1_3:33672310-33672329 Msa0115090:intron 35.0%
AAGCCACAGACCAAATAATT+AGG - chr1_3:33672411-33672430 Msa0115090:intron 35.0%
TCTCCTAATTATTTGGTCTG+TGG + chr1_3:33672417-33672436 None:intergenic 35.0%
TGATTCATGGCAAGACATTA+TGG - chr1_3:33672467-33672486 Msa0115090:intron 35.0%
TAAACCCTAACCCTATGTAT+AGG - chr1_3:33672650-33672669 Msa0115090:intron 35.0%
AAACCCTAACCCTATGTATA+GGG - chr1_3:33672651-33672670 Msa0115090:intron 35.0%
TATCCCTATACATAGGGTTA+GGG + chr1_3:33672657-33672676 None:intergenic 35.0%
ATATCCCTATACATAGGGTT+AGG + chr1_3:33672658-33672677 None:intergenic 35.0%
CATTAGTCATATGCCAGATT+CGG + chr1_3:33673426-33673445 None:intergenic 35.0%
CTTGTAGTTTAGCAATCTGT+AGG + chr1_3:33673479-33673498 None:intergenic 35.0%
! AATCATGCAACTTTTAACGG+AGG - chr1_3:33673713-33673732 Msa0115090:intron 35.0%
GTTTCATCATCACTTCTTTC+AGG - chr1_3:33673735-33673754 Msa0115090:intron 35.0%
AATGAGTGCAAGCAGTATTT+AGG + chr1_3:33674232-33674251 None:intergenic 35.0%
TTGAACTGCATTCTTATAGG+GGG - chr1_3:33674253-33674272 Msa0115090:intron 35.0%
!! GTTTTCGAGGTTAACAGATA+GGG + chr1_3:33674361-33674380 None:intergenic 35.0%
!! AGTTTTCGAGGTTAACAGAT+AGG + chr1_3:33674362-33674381 None:intergenic 35.0%
!! TCAATATTGAGGAGTGCTAA+AGG - chr1_3:33674645-33674664 Msa0115090:intron 35.0%
GACACTGGAAAGAAGTAAAA+CGG - chr1_3:33674698-33674717 Msa0115090:intron 35.0%
TGGTTGAATGAGTAACTTTG+AGG + chr1_3:33674738-33674757 None:intergenic 35.0%
! CTTTGGTTTCTTCGAAAGAT+TGG + chr1_3:33674758-33674777 None:intergenic 35.0%
AGATAAAGATGATGCCATTG+AGG - chr1_3:33674941-33674960 Msa0115090:five_prime_UTR 35.0%
TTATCTGTCAGATGTTAGCA+AGG - chr1_3:33675051-33675070 Msa0115090:five_prime_UTR 35.0%
AAAGCGGTTCAGCAATATAA+AGG - chr1_3:33675193-33675212 Msa0115090:five_prime_UTR 35.0%
AAGCGGTTCAGCAATATAAA+GGG - chr1_3:33675194-33675213 Msa0115090:five_prime_UTR 35.0%
!! CTGAGTGATTGTGACTTGTT+TGG + chr1_3:33669408-33669427 None:intergenic 40.0%
!!! AAGCGCTTTGTGTTTTGAAG+AGG + chr1_3:33669476-33669495 None:intergenic 40.0%
!! CATGAATTTGTTGCACGGTT+CGG - chr1_3:33669869-33669888 Msa0115090:CDS 40.0%
CAGTGAAAGTGGAGCTTAAT+CGG - chr1_3:33669895-33669914 Msa0115090:CDS 40.0%
!! AAGCTGAGATTAAAGCGTTG+AGG - chr1_3:33670060-33670079 Msa0115090:CDS 40.0%
GAGAGAAAAAGCTGTTGAAG+AGG - chr1_3:33670097-33670116 Msa0115090:CDS 40.0%
! TTACATGTGAGTGTCGTGTA+TGG + chr1_3:33670215-33670234 None:intergenic 40.0%
ACGACACTCACATGTAAACA+CGG - chr1_3:33670218-33670237 Msa0115090:intron 40.0%
! CTTGGTTGACTTAGTTCAAC+TGG - chr1_3:33670450-33670469 Msa0115090:intron 40.0%
! TGGCAATGCTGAGATTTGTT+AGG - chr1_3:33670470-33670489 Msa0115090:intron 40.0%
AAACTCACACACACACAAAG+GGG + chr1_3:33670537-33670556 None:intergenic 40.0%
!! TGTGTGTGTGAGTTTTTAGG+TGG - chr1_3:33670542-33670561 Msa0115090:CDS 40.0%
TCCTGGTGGGATCATATTAT+TGG - chr1_3:33670669-33670688 Msa0115090:intron 40.0%
ACCAATAATATGATCCCACC+AGG + chr1_3:33670673-33670692 None:intergenic 40.0%
GTGGGATCATATTATTGGTG+TGG - chr1_3:33670674-33670693 Msa0115090:intron 40.0%
GAAGTTGCAGCTGAAAAATG+GGG - chr1_3:33670715-33670734 Msa0115090:intron 40.0%
!! GTTTGTCTTTTAAGTGAGGG+AGG - chr1_3:33670754-33670773 Msa0115090:CDS 40.0%
!! TTGTCTTTTAAGTGAGGGAG+GGG - chr1_3:33670756-33670775 Msa0115090:CDS 40.0%
GCATATCAACTATCGGACAA+TGG + chr1_3:33671012-33671031 None:intergenic 40.0%
TGTAAACCAAGGGAGGATAA+AGG + chr1_3:33671403-33671422 None:intergenic 40.0%
TTATCCTCCCTTGGTTTACA+TGG - chr1_3:33671403-33671422 Msa0115090:CDS 40.0%
TGCAATGCCATGTAAACCAA+GGG + chr1_3:33671413-33671432 None:intergenic 40.0%
ATGCAATGCCATGTAAACCA+AGG + chr1_3:33671414-33671433 None:intergenic 40.0%
ACTACTAGCGTAAGAACAGA+AGG - chr1_3:33671652-33671671 Msa0115090:intron 40.0%
! TGTGTCATTGCCTCTTAGAT+AGG + chr1_3:33671774-33671793 None:intergenic 40.0%
AAAGTTAGGACATGGAGATG+AGG - chr1_3:33671851-33671870 Msa0115090:intron 40.0%
GAAGAGCTAGCAAGAGATTA+AGG - chr1_3:33672191-33672210 Msa0115090:intron 40.0%
GTATTGGGTCTTACTTGGTT+TGG - chr1_3:33672309-33672328 Msa0115090:intron 40.0%
TTACGCATGATAGAGGCAAA+AGG + chr1_3:33672908-33672927 None:intergenic 40.0%
! AAGAGCTGTCAAAGGTTGAT+GGG - chr1_3:33673044-33673063 Msa0115090:intron 40.0%
TAGGGCTCAAAGCAATACTT+TGG + chr1_3:33673101-33673120 None:intergenic 40.0%
TAGTGCAGCTTCTTTGGATT+TGG + chr1_3:33673529-33673548 None:intergenic 40.0%
TTCAAGTAGTGCAGCTTCTT+TGG + chr1_3:33673535-33673554 None:intergenic 40.0%
AAAGACTGTTCAGTTTGCCT+TGG - chr1_3:33673560-33673579 Msa0115090:intron 40.0%
GAAACAGATTGAGATTTGCC+AGG - chr1_3:33673632-33673651 Msa0115090:intron 40.0%
GGACAGAATGCATAGACAAA+AGG - chr1_3:33673774-33673793 Msa0115090:intron 40.0%
CAGAATGCATAGACAAAAGG+TGG - chr1_3:33673777-33673796 Msa0115090:intron 40.0%
CTGTTGTGGTTGCAAATGAA+TGG - chr1_3:33674065-33674084 Msa0115090:intron 40.0%
AAGTCATGCCTGTCAAACAA+TGG - chr1_3:33674104-33674123 Msa0115090:intron 40.0%
TCTTCAAGCCATTGTTTGAC+AGG + chr1_3:33674115-33674134 None:intergenic 40.0%
AGTTTGAGGGGAAATTCTAG+CGG - chr1_3:33674465-33674484 Msa0115090:intron 40.0%
! GAGGGAAGAAGTATGAACAA+TGG - chr1_3:33674507-33674526 Msa0115090:intron 40.0%
TATCAACTCCACCTAGTGAT+TGG + chr1_3:33674545-33674564 None:intergenic 40.0%
CTTAGGCAAGAATCCATTAG+AGG + chr1_3:33674583-33674602 None:intergenic 40.0%
!!! AATCTTTTGATGGTGGCTCA+AGG - chr1_3:33674676-33674695 Msa0115090:intron 40.0%
! AAAGAAGTAAAACGGTGCTG+AGG - chr1_3:33674706-33674725 Msa0115090:intron 40.0%
! AAGAAGTAAAACGGTGCTGA+GGG - chr1_3:33674707-33674726 Msa0115090:intron 40.0%
ATACTATCCTCTGTATCTGC+CGG + chr1_3:33674840-33674859 None:intergenic 40.0%
ATATGACCTCTTGCAGAAAG+AGG - chr1_3:33674872-33674891 Msa0115090:CDS 40.0%
TTGAGGCAAAGAAGATGAGA+AGG - chr1_3:33675105-33675124 Msa0115090:five_prime_UTR 40.0%
TGAGGCAAAGAAGATGAGAA+GGG - chr1_3:33675106-33675125 Msa0115090:five_prime_UTR 40.0%
TACAAGAGAACAGAGCAAAG+CGG - chr1_3:33675177-33675196 Msa0115090:five_prime_UTR 40.0%
AGAATTTGAATGCGCGAGTG+AGG - chr1_3:33669693-33669712 Msa0115090:CDS 45.0%
GAATTTGAATGCGCGAGTGA+GGG - chr1_3:33669694-33669713 Msa0115090:CDS 45.0%
AGGGTTTCGTTTCAGATCGA+CGG - chr1_3:33669713-33669732 Msa0115090:CDS 45.0%
AACGATCCAGAAAATGGTGC+CGG + chr1_3:33669780-33669799 None:intergenic 45.0%
ATCCATACTCTGCTGTCTAG+CGG + chr1_3:33669838-33669857 None:intergenic 45.0%
CGATTAAGCTCCACTTTCAC+TGG + chr1_3:33669897-33669916 None:intergenic 45.0%
!! AAGCGTTGAGGCATTCTGAA+CGG - chr1_3:33670072-33670091 Msa0115090:CDS 45.0%
CCAACACAATACCGACACAT+GGG + chr1_3:33670280-33670299 None:intergenic 45.0%
ACCAACACAATACCGACACA+TGG + chr1_3:33670281-33670300 None:intergenic 45.0%
!! GTGTTGGTGTCAAACACTGT+TGG - chr1_3:33670293-33670312 Msa0115090:intron 45.0%
TGGTTACCCAAGTTCGAACT+GGG - chr1_3:33670507-33670526 Msa0115090:CDS 45.0%
!!! CATGTTGGGCTTGTTTTGTG+AGG - chr1_3:33670611-33670630 Msa0115090:CDS 45.0%
AATGCCATGTAAACCAAGGG+AGG + chr1_3:33671410-33671429 None:intergenic 45.0%
ACTAGCGTAAGAACAGAAGG+TGG - chr1_3:33671655-33671674 Msa0115090:intron 45.0%
TGTGCTGCAAGCCTATTATG+GGG + chr1_3:33671698-33671717 None:intergenic 45.0%
CTGTGCTGCAAGCCTATTAT+GGG + chr1_3:33671699-33671718 None:intergenic 45.0%
GCACGGAGAAGGGAAAAAAA+TGG - chr1_3:33671828-33671847 Msa0115090:intron 45.0%
TAGGACATGGAGATGAGGTT+TGG - chr1_3:33671856-33671875 Msa0115090:intron 45.0%
AGGACATGGAGATGAGGTTT+GGG - chr1_3:33671857-33671876 Msa0115090:intron 45.0%
!! GACTCGTAAAAGCACTAGCA+AGG - chr1_3:33672346-33672365 Msa0115090:intron 45.0%
!! TCGTAAAAGCACTAGCAAGG+AGG - chr1_3:33672349-33672368 Msa0115090:intron 45.0%
!! CGTAAAAGCACTAGCAAGGA+GGG - chr1_3:33672350-33672369 Msa0115090:intron 45.0%
AGCAAGGAGGGTAGATCATA+TGG - chr1_3:33672362-33672381 Msa0115090:intron 45.0%
AAGGAGGGTAGATCATATGG+AGG - chr1_3:33672365-33672384 Msa0115090:intron 45.0%
GAAGAGCTGTCAAAGGTTGA+TGG - chr1_3:33673043-33673062 Msa0115090:intron 45.0%
TTGCAGCAGAAGCTACTCTT+CGG - chr1_3:33673245-33673264 Msa0115090:intron 45.0%
GGAGCAAGAATTGCTTCGAT+CGG + chr1_3:33673307-33673326 None:intergenic 45.0%
CGAAGCAATTCTTGCTCCTT+TGG - chr1_3:33673309-33673328 Msa0115090:intron 45.0%
AGCAATTCTTGCTCCTTTGG+AGG - chr1_3:33673312-33673331 Msa0115090:intron 45.0%
! AGCTTTAGTTCAGCCTCCAA+AGG + chr1_3:33673328-33673347 None:intergenic 45.0%
! AGGCTGAACTAAAGCTTGCT+CGG - chr1_3:33673332-33673351 Msa0115090:intron 45.0%
ACCTGGCGAGAAAGAATTGA+TGG - chr1_3:33673395-33673414 Msa0115090:intron 45.0%
TCCATCAATTCTTTCTCGCC+AGG + chr1_3:33673399-33673418 None:intergenic 45.0%
TGGCGAGAAAGAATTGATGG+AGG - chr1_3:33673398-33673417 Msa0115090:intron 45.0%
GGCGAGAAAGAATTGATGGA+GGG - chr1_3:33673399-33673418 Msa0115090:intron 45.0%
!!! GTTTTGGAGATCATCCACCA+TGG + chr1_3:33673595-33673614 None:intergenic 45.0%
! TTTGCCAGGTATCGCAATCT+TGG - chr1_3:33673646-33673665 Msa0115090:intron 45.0%
AAAAGCTCACCCAAACTGTG+AGG - chr1_3:33673809-33673828 Msa0115090:intron 45.0%
AAAGCTCACCCAAACTGTGA+GGG - chr1_3:33673810-33673829 Msa0115090:intron 45.0%
!! TTCTAGCTCCCTCACAGTTT+GGG + chr1_3:33673821-33673840 None:intergenic 45.0%
!! TGTTTGCTGTTACCTTGGCA+CGG + chr1_3:33674039-33674058 None:intergenic 45.0%
TGCCAAGGTAACAGCAAACA+GGG - chr1_3:33674039-33674058 Msa0115090:intron 45.0%
!! TACCCTGTTTGCTGTTACCT+TGG + chr1_3:33674044-33674063 None:intergenic 45.0%
GTTCATACTTCTTCCCTCTG+CGG + chr1_3:33674505-33674524 None:intergenic 45.0%
! ATAGGGATGACCTGAGTTGA+GGG + chr1_3:33674617-33674636 None:intergenic 45.0%
! AGAAGTAAAACGGTGCTGAG+GGG - chr1_3:33674708-33674727 Msa0115090:intron 45.0%
CGAAGAAACCAAAGAGAGAG+AGG - chr1_3:33674764-33674783 Msa0115090:CDS 45.0%
AGAAACCAAAGAGAGAGAGG+CGG - chr1_3:33674767-33674786 Msa0115090:CDS 45.0%
AGAGAGAGGCGGATGATAAT+TGG - chr1_3:33674778-33674797 Msa0115090:CDS 45.0%
GAGGCGGATGATAATTGGAA+AGG - chr1_3:33674783-33674802 Msa0115090:CDS 45.0%
TAAGCCAAATGACTTCCCAC+CGG - chr1_3:33674818-33674837 Msa0115090:CDS 45.0%
TTCATGACCAGCTTTCCTCA+AGG + chr1_3:33674904-33674923 None:intergenic 45.0%
CTGTCAGATGTTAGCAAGGA+AGG - chr1_3:33675055-33675074 Msa0115090:five_prime_UTR 45.0%
AGATACGTTGACCAAAGCCA+TGG - chr1_3:33675079-33675098 Msa0115090:five_prime_UTR 45.0%
CTTCTTTGCCTCAACTTCCA+TGG + chr1_3:33675099-33675118 None:intergenic 45.0%
GGAAGTAGCTTCCATGGAAA+AGG - chr1_3:33675127-33675146 Msa0115090:five_prime_UTR 45.0%
AGTAGCTTCCATGGAAAAGG+AGG - chr1_3:33675130-33675149 Msa0115090:five_prime_UTR 45.0%
!! GGTTCTGAGCACTGTTTACA+GGG + chr1_3:33675220-33675239 None:intergenic 45.0%
!! TGGTTCTGAGCACTGTTTAC+AGG + chr1_3:33675221-33675240 None:intergenic 45.0%
!!! AATTTTACTTAATTTTTTTT+TGG - chr1_3:33669976-33669995 Msa0115090:CDS 5.0%
!!! TTATTATGTTTTTTTTTTTT+TGG - chr1_3:33670374-33670393 Msa0115090:intron 5.0%
!!! TATTATGTTTTTTTTTTTTT+GGG - chr1_3:33670375-33670394 Msa0115090:intron 5.0%
!! TTTATATCAAAAAATAAATA+AGG + chr1_3:33674188-33674207 None:intergenic 5.0%
!!! TTTTTTATTTTTATTTTTTC+AGG - chr1_3:33674407-33674426 Msa0115090:intron 5.0%
ACGGCGATGGAGGAGATTTA+CGG - chr1_3:33669732-33669751 Msa0115090:CDS 50.0%
ATGGAGGAGATTTACGGCGA+CGG - chr1_3:33669738-33669757 Msa0115090:CDS 50.0%
GAGAAGGTAGAACTTCGTCG+AGG - chr1_3:33669802-33669821 Msa0115090:CDS 50.0%
TTCCGCTAGACAGCAGAGTA+TGG - chr1_3:33669833-33669852 Msa0115090:CDS 50.0%
CGGCTTGAGAATGAAGTTCG+AGG - chr1_3:33669915-33669934 Msa0115090:CDS 50.0%
! CCCATGTGTCGGTATTGTGT+TGG - chr1_3:33670277-33670296 Msa0115090:intron 50.0%
GTGGTTACCCAAGTTCGAAC+TGG - chr1_3:33670506-33670525 Msa0115090:CDS 50.0%
GGAGATCCCAGTTCGAACTT+GGG + chr1_3:33670516-33670535 None:intergenic 50.0%
AGCGTAAGAACAGAAGGTGG+TGG - chr1_3:33671658-33671677 Msa0115090:intron 50.0%
CCTGTGCTGCAAGCCTATTA+TGG + chr1_3:33671700-33671719 None:intergenic 50.0%
CCATAATAGGCTTGCAGCAC+AGG - chr1_3:33671697-33671716 Msa0115090:intron 50.0%
AGTCTTAGAGTGCACGGAGA+AGG - chr1_3:33671817-33671836 Msa0115090:intron 50.0%
GTCTTAGAGTGCACGGAGAA+GGG - chr1_3:33671818-33671837 Msa0115090:intron 50.0%
!! CTTGGTTTGGGCATGTGTAG+TGG - chr1_3:33672322-33672341 Msa0115090:intron 50.0%
GCTGTCTGAAGAGCTGTCAA+AGG - chr1_3:33673036-33673055 Msa0115090:intron 50.0%
AGCAGAAGCTACTCTTCGGA+GGG - chr1_3:33673249-33673268 Msa0115090:intron 50.0%
CATCATCCTTCTGAGCAGCA+TGG + chr1_3:33673276-33673295 None:intergenic 50.0%
GCAAGAATTGCTTCGATCGG+AGG + chr1_3:33673304-33673323 None:intergenic 50.0%
! ACTAAAGCTTGCTCGGCAAG+AGG - chr1_3:33673339-33673358 Msa0115090:intron 50.0%
ATTGATGGAGGGACCGAATC+TGG - chr1_3:33673410-33673429 Msa0115090:intron 50.0%
TGTTCAGTTTGCCTTGGCCA+AGG - chr1_3:33673566-33673585 Msa0115090:intron 50.0%
TTGGAGATCATCCACCATGG+AGG + chr1_3:33673592-33673611 None:intergenic 50.0%
TCGTCCAAGATTGCGATACC+TGG + chr1_3:33673653-33673672 None:intergenic 50.0%
GCATAGACAAAAGGTGGCAG+AGG - chr1_3:33673783-33673802 Msa0115090:intron 50.0%
!! CTTCTAGCTCCCTCACAGTT+TGG + chr1_3:33673822-33673841 None:intergenic 50.0%
CTAGAAGAGTCAGTCCTTGC+AGG - chr1_3:33673835-33673854 Msa0115090:intron 50.0%
GTGCCAAGGTAACAGCAAAC+AGG - chr1_3:33674038-33674057 Msa0115090:intron 50.0%
AGCAAACAGGGTAGCTGTTG+TGG - chr1_3:33674051-33674070 Msa0115090:intron 50.0%
TGAAGAGCGACGATTCTTGC+AGG - chr1_3:33674129-33674148 Msa0115090:intron 50.0%
TCAATTGCGGCTCAAAGTGC+TGG - chr1_3:33674437-33674456 Msa0115090:intron 50.0%
!! AAGTGCTGGAGGAGAGTTTG+AGG - chr1_3:33674451-33674470 Msa0115090:intron 50.0%
! AGTGCTGGAGGAGAGTTTGA+GGG - chr1_3:33674452-33674471 Msa0115090:intron 50.0%
TCTTCTCGTCGCCAATCACT+AGG - chr1_3:33674531-33674550 Msa0115090:CDS 50.0%
TGAGGGGATGGTGTTCTCTT+AGG + chr1_3:33674600-33674619 None:intergenic 50.0%
! TAGGGATGACCTGAGTTGAG+GGG + chr1_3:33674616-33674635 None:intergenic 50.0%
GATAGGGATGACCTGAGTTG+AGG + chr1_3:33674618-33674637 None:intergenic 50.0%
ATCATCCGCCTCTCTCTCTT+TGG + chr1_3:33674775-33674794 None:intergenic 50.0%
TATCCTCTGTATCTGCCGGT+GGG + chr1_3:33674836-33674855 None:intergenic 50.0%
CAACGACCTCTTTCTGCAAG+AGG + chr1_3:33674881-33674900 None:intergenic 50.0%
AGAAAGAGGTCGTTGCCTTG+AGG - chr1_3:33674886-33674905 Msa0115090:CDS 50.0%
GACCAAAGCCATGGAAGTTG+AGG - chr1_3:33675088-33675107 Msa0115090:five_prime_UTR 50.0%
TGCCTCAACTTCCATGGCTT+TGG + chr1_3:33675093-33675112 None:intergenic 50.0%
GAGAAGGGAAGTAGCTTCCA+TGG - chr1_3:33675121-33675140 Msa0115090:five_prime_UTR 50.0%
! AGCAGCTACCTCCTTTTCCA+TGG + chr1_3:33675141-33675160 None:intergenic 50.0%
TCGTTTCAGATCGACGGCGA+TGG - chr1_3:33669719-33669738 Msa0115090:CDS 55.0%
TTTCAGATCGACGGCGATGG+AGG - chr1_3:33669722-33669741 Msa0115090:CDS 55.0%
AGAACTTCGTCGAGGAGACG+CGG - chr1_3:33669810-33669829 Msa0115090:CDS 55.0%
! CGGTTCGGATCCAGTGAAAG+TGG - chr1_3:33669884-33669903 Msa0115090:CDS 55.0%
GGGAGATCCCAGTTCGAACT+TGG + chr1_3:33670517-33670536 None:intergenic 55.0%
CAGCAGAAGCTACTCTTCGG+AGG - chr1_3:33673248-33673267 Msa0115090:intron 55.0%
ATCATCCACCATGGAGGCCT+TGG + chr1_3:33673586-33673605 None:intergenic 55.0%
GAAGAGTCAGTCCTTGCAGG+TGG - chr1_3:33673838-33673857 Msa0115090:intron 55.0%
!! ATTGCGGCTCAAAGTGCTGG+AGG - chr1_3:33674440-33674459 Msa0115090:intron 55.0%
GTGCTGGAGGAGAGTTTGAG+GGG - chr1_3:33674453-33674472 Msa0115090:intron 55.0%
TCTCGTCGCCAATCACTAGG+TGG - chr1_3:33674534-33674553 Msa0115090:CDS 55.0%
GAACACCATCCCCTCAACTC+AGG - chr1_3:33674604-33674623 Msa0115090:intron 55.0%
! GATGACCTGAGTTGAGGGGA+TGG + chr1_3:33674612-33674631 None:intergenic 55.0%
!! TGATGGTGGCTCAAGGACAC+TGG - chr1_3:33674683-33674702 Msa0115090:intron 55.0%
TCTGCCGGTGGGAAGTCATT+TGG + chr1_3:33674825-33674844 None:intergenic 55.0%
CTATCCTCTGTATCTGCCGG+TGG + chr1_3:33674837-33674856 None:intergenic 55.0%
GTCGTTGCCTTGAGGAAAGC+TGG - chr1_3:33674894-33674913 Msa0115090:exon 55.0%
GAGGAGATTTACGGCGACGG+AGG - chr1_3:33669741-33669760 Msa0115090:CDS 60.0%
GATTTACGGCGACGGAGGAG+CGG - chr1_3:33669746-33669765 Msa0115090:CDS 60.0%
! GCGACTCCGGCACCATTTTC+TGG - chr1_3:33669771-33669790 Msa0115090:CDS 60.0%
GTGAGGGAGGGGTGATGCAT+AGG - chr1_3:33670767-33670786 Msa0115090:CDS 60.0%
GAGGGTCCATGCTGCTCAGA+AGG - chr1_3:33673267-33673286 Msa0115090:intron 60.0%
TTGCTGCTGCACCACCTGCA+AGG + chr1_3:33673852-33673871 None:intergenic 60.0%
TAGAGAGTTGGGCCGTGCCA+AGG - chr1_3:33674024-33674043 Msa0115090:intron 60.0%
AGTAGTCGCAGCACCGCAGA+GGG - chr1_3:33674489-33674508 Msa0115090:intron 60.0%
CTTCCCACCGGCAGATACAG+AGG - chr1_3:33674830-33674849 Msa0115090:CDS 60.0%
TGCCTTGGCCAAGGCCTCCA+TGG - chr1_3:33673575-33673594 Msa0115090:intron 65.0%
CACCATGGAGGCCTTGGCCA+AGG + chr1_3:33673580-33673599 None:intergenic 65.0%
CTTGGCCAAGGCCTCCATGG+TGG - chr1_3:33673578-33673597 Msa0115090:intron 65.0%
CAGTAGTCGCAGCACCGCAG+AGG - chr1_3:33674488-33674507 Msa0115090:intron 65.0%
TTACGGCGACGGAGGAGCGG+TGG - chr1_3:33669749-33669768 Msa0115090:CDS 70.0%
CGGAGGAGCGGTGGCGACTC+CGG - chr1_3:33669758-33669777 Msa0115090:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 33669402 33675244 33669402 ID=Msa0115090;Name=Msa0115090
chr1_3 mRNA 33669402 33675244 33669402 ID=Msa0115090-mRNA-1;Parent=Msa0115090;Name=Msa0115090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=336|1|1|1|1|1|10|0|595
chr1_3 exon 33669402 33669584 33669402 ID=Msa0115090-mRNA-1:exon:10546;Parent=Msa0115090-mRNA-1
chr1_3 exon 33669684 33670217 33669684 ID=Msa0115090-mRNA-1:exon:10545;Parent=Msa0115090-mRNA-1
chr1_3 exon 33670303 33670374 33670303 ID=Msa0115090-mRNA-1:exon:10544;Parent=Msa0115090-mRNA-1
chr1_3 exon 33670496 33670642 33670496 ID=Msa0115090-mRNA-1:exon:10543;Parent=Msa0115090-mRNA-1
chr1_3 exon 33670734 33670889 33670734 ID=Msa0115090-mRNA-1:exon:10542;Parent=Msa0115090-mRNA-1
chr1_3 exon 33670993 33671163 33670993 ID=Msa0115090-mRNA-1:exon:10541;Parent=Msa0115090-mRNA-1
chr1_3 exon 33671286 33671456 33671286 ID=Msa0115090-mRNA-1:exon:10540;Parent=Msa0115090-mRNA-1
chr1_3 exon 33671544 33671609 33671544 ID=Msa0115090-mRNA-1:exon:10539;Parent=Msa0115090-mRNA-1
chr1_3 exon 33674528 33674613 33674528 ID=Msa0115090-mRNA-1:exon:10538;Parent=Msa0115090-mRNA-1
chr1_3 exon 33674710 33675244 33674710 ID=Msa0115090-mRNA-1:exon:10537;Parent=Msa0115090-mRNA-1
chr1_3 five_prime_UTR 33674909 33675244 33674909 ID=Msa0115090-mRNA-1:five_prime_utr;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33674710 33674908 33674710 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33674528 33674613 33674528 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33671544 33671609 33671544 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33671286 33671456 33671286 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33670993 33671163 33670993 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33670734 33670889 33670734 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33670496 33670642 33670496 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33670303 33670374 33670303 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33669684 33670217 33669684 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
chr1_3 CDS 33669402 33669584 33669402 ID=Msa0115090-mRNA-1:cds;Parent=Msa0115090-mRNA-1
Gene Sequence

>Msa0115090

ATGGAGGAGATTTACGGCGACGGAGGAGCGGTGGCGACTCCGGCACCATTTTCTGGATCGTTTAGAGAAGGTAGAACTTCGTCGAGGAGACGCGGTTCCGCTAGACAGCAGAGTATGGATGCTGATGAGTTCATGAATTTGTTGCACGGTTCGGATCCAGTGAAAGTGGAGCTTAATCGGCTTGAGAATGAAGTTCGAGATAAGGATAGAGAATTATCGGAAGCACAAGCTGAGATTAAAGCGTTGAGGCATTCTGAACGGTTGAGAGAAAAAGCTGTTGAAGAGCTGTCTGAAGAGCTGTCAAAGGTTGATGGGAAGCTAAAATTAACGGAATCACTATTAGAAACCAAAAATCTTGAAATAAAAAAAATCAATGATGAAAAGAAAGCATCAATGGCAGCTCAGTTTGCAGCAGAAGCTACTCTTCGGAGGGTCCATGCTGCTCAGAAGGATGATGACATGCCTCCGATCGAAGCAATTCTTGCTCCTTTGGAGGCTGAACTAAAGCTTGCTCGGCAAGAGATTGCTAAACTACAAGATGACAACAGAGCTTTAGATCGTCTCACCAAATCCAAAGAAGCTGCACTACTTGAAGCTGAAAAGACTGTTCAGTTTGCCTTGGCCAAGGCCTCCATGGTGGATGATCTCCAAAACAAAAATCAAGAGCTGATGAAACAGATTGAGATTTGCCAGGAAGAAAACAAAATCTTGGACAGAATGCATAGACAAAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTGAGGGAGCTAGAAGAGTCAGTCCTTGCAGGTGGTGCAGCAGCAAATGCAGTTAGAGATTATCAACGGAAAGTTCAAGAAATGAATGAAGAACGAAAAACACTTAATAGAGAGTTGGGCCGTGCCAAGGTAACAGCAAACAGGGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATTCTAATGATAAAGTCATGCCTGTCAAACAATGGCTTGAAGAGCGACGATTCTTGCAGGGGGAAATGCAGCAACTTCGTGATAAGCTTGCTATAGTTGAGCGCACTGCAAAGTCTGAAGCACAATTGAAAGAAAAATATCAATTGCGGCTCAAAGTGCTGGAGGAGAGTTTGAGGGGAAATTCTAGCGGCAGTAGTCGCAGCACCGCAGAGGGAAGAAGTATGAACAATGGTTCTTCTCGTCGCCAATCACTAGGTGGAGTTGATAATATCTCAAAATTAACCTCTAATGGATTCTTGCCTAAGAGAACACCATCCCCTCAACTCAGGTCATCCCTATCATCTAGCTCAATATTGAGGAGTGCTAAAGGAACATCTAAATCTTTTGATGGTGGCTCAAGGACACTGGAAAGAAGTAAAACGGTGCTGAGGGGAGCACCTCAAAGTTACTCATTCAACCAATCTTTCGAAGAAACCAAAGAGAGAGAGGCGGATGATAATTGGAAAGGAAATTCAGGTGATAAGCCAAATGACTTCCCACCGGCAGATACAGAGGATAGTATTCCAAGTGTTTTATATGACCTCTTGCAGAAAGAGGTCGTTGCCTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAGATGTTAGCAAGGAAGGTAGATACGTTGACCAAAGCCATGGAAGTTGAGGCAAAGAAGATGAGAAGGGAAGTAGCTTCCATGGAAAAGGAGGTAGCTGCTATGCGTGTCGACAAAGTACAAGAGAACAGAGCAAAGCGGTTCAGCAATATAAAGGGCCCTGTAAACAGTGCTCAGAACCAGCTA

Protein sequence

>Msa0115090

MEEIYGDGGAVATPAPFSGSFREGRTSSRRRGSARQQSMDADEFMNLLHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALRHSERLREKAVEELSEELSKVDGKLKLTESLLETKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAEKTVQFALAKASMVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEESVLAGGAAANAVRDYQRKVQEMNEERKTLNRELGRAKVTANRVAVVVANEWKDSNDKVMPVKQWLEERRFLQGEMQQLRDKLAIVERTAKSEAQLKEKYQLRLKVLEESLRGNSSGSSRSTAEGRSMNNGSSRRQSLGGVDNISKLTSNGFLPKRTPSPQLRSSLSSSSILRSAKGTSKSFDGGSRTLERSKTVLRGAPQSYSFNQSFEETKEREADDNWKGNSGDKPNDFPPADTEDSIPSVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLARKVDTLTKAMEVEAKKMRREVASMEKEVAAMRVDKVQENRAKRFSNIKGPVNSAQNQL