AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112190 MtrunA17_Chr7g0247841 98.324 537 9 0 1 537 1 537 0.0 1082
Msa1112190 MtrunA17_Chr8g0348831 80.827 532 95 3 7 537 15 540 0.0 883
Msa1112190 MtrunA17_Chr6g0475601 70.196 510 148 3 21 529 27 533 0.0 748
Msa1112190 MtrunA17_Chr7g0214221 51.303 499 240 2 22 519 30 526 3.21e-174 503
Msa1112190 MtrunA17_Chr1g0213851 54.545 231 103 1 287 517 1 229 1.09e-85 265
Msa1112190 MtrunA17_Chr1g0213841 45.133 113 61 1 174 285 6 118 1.65e-23 95.9
Msa1112190 MtrunA17_Chr1g0203091 30.769 221 112 6 341 523 145 362 3.33e-22 98.6
Msa1112190 MtrunA17_Chr3g0139491 31.076 251 141 10 274 515 89 316 4.08e-21 94.7
Msa1112190 MtrunA17_Chr1g0147151 35.256 156 86 5 345 500 162 302 7.76e-19 88.2
Msa1112190 MtrunA17_Chr1g0213831 34.021 97 64 0 37 133 30 126 2.47e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112190 AT1G01650.1 72.486 527 144 1 8 533 12 538 0.0 798
Msa1112190 AT1G63690.1 72.781 507 134 3 22 527 27 530 0.0 763
Msa1112190 AT1G63690.2 72.584 507 135 3 22 527 27 530 0.0 761
Msa1112190 AT1G01650.3 73.485 396 104 1 139 533 1 396 0.0 605
Msa1112190 AT1G01650.4 73.485 396 104 1 139 533 1 396 0.0 605
Msa1112190 AT1G01650.2 73.485 396 104 1 139 533 1 396 0.0 605
Msa1112190 AT2G43070.2 48.369 521 259 4 22 535 28 545 7.52e-162 471
Msa1112190 AT2G43070.1 48.738 515 260 3 22 535 28 539 9.64e-162 471
Msa1112190 AT2G43070.4 48.369 521 259 4 22 535 87 604 5.13e-161 471
Msa1112190 AT2G43070.3 48.738 515 260 3 22 535 87 598 7.21e-161 471
Msa1112190 AT1G05820.1 45.749 494 264 3 28 519 30 521 1.30e-145 430
Msa1112190 AT1G05820.2 45.895 475 253 3 28 500 30 502 1.34e-141 418
Msa1112190 AT1G05820.4 47.781 383 196 3 139 519 1 381 8.70e-121 361
Msa1112190 AT1G05820.3 41.910 377 215 3 28 402 30 404 3.21e-92 288
Msa1112190 AT4G33410.1 26.724 348 178 15 238 533 47 369 5.85e-21 95.1
Msa1112190 AT2G03120.1 34.503 171 97 5 345 515 161 316 6.20e-21 94.7

Find 145 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTTGAGGTTTGGTATT+TGG 0.124495 7_3:-58165683 None:intergenic
CCATTCTCTGTGCTTCTTAC+TGG 0.166120 7_3:+58164327 Msa1112190:CDS
CTTCTTCTTCTCTGTGTTCA+TGG 0.169898 7_3:+58161656 Msa1112190:CDS
TCCACACCATCAATTGAAAT+TGG 0.185349 7_3:-58163347 None:intergenic
CTTCTTTCCCAATGACAAAA+AGG 0.201334 7_3:-58167007 None:intergenic
GGTTACAGTGTCATCGGTTT+CGG 0.211475 7_3:+58166093 Msa1112190:CDS
CATAGCATTCGCTGTGGTTT+GGG 0.211873 7_3:+58165431 Msa1112190:CDS
CCTTCCTATATGACATCTTC+TGG 0.226829 7_3:+58165843 Msa1112190:CDS
GTTTATGCTTTACAAACTAA+TGG 0.249829 7_3:+58164723 Msa1112190:CDS
TGAGCAAGAGAAGCTATTAA+AGG 0.254085 7_3:+58164379 Msa1112190:CDS
GTTACAGTGTCATCGGTTTC+GGG 0.257862 7_3:+58166094 Msa1112190:CDS
ATACATAGCTTTGAATTTGA+TGG 0.290429 7_3:+58166520 Msa1112190:CDS
AATGAAACCGATATTGATAT+TGG 0.297635 7_3:+58164004 Msa1112190:CDS
AAAGTTCCAATTTCAATTGA+TGG 0.322977 7_3:+58163341 Msa1112190:CDS
TTGTCACATCCAGGTTTCTT+AGG 0.323154 7_3:-58161732 None:intergenic
AACTAGAATACCTTATTCTT+AGG 0.323199 7_3:-58163485 None:intergenic
GCATAGCATTCGCTGTGGTT+TGG 0.331467 7_3:+58165430 Msa1112190:CDS
ACCGCGTTTATTCGATCCTT+GGG 0.332274 7_3:+58166068 Msa1112190:CDS
CTTTAGCGTTATTTATAATC+AGG 0.343087 7_3:-58163735 None:intergenic
GCTCACGGGCGAGATCATTT+TGG 0.348166 7_3:+58163645 Msa1112190:intron
GGGTATCGCTTTGATAATTA+CGG 0.355376 7_3:+58165647 Msa1112190:intron
TTGTAGCAAACCTAAGAATA+AGG 0.355750 7_3:+58163475 Msa1112190:CDS
AAGATGGTTCATTGATGTTC+TGG 0.357441 7_3:+58164747 Msa1112190:CDS
GTCGGTGTTGGTGCAAGATT+TGG 0.369570 7_3:+58163383 Msa1112190:CDS
CGGCAATGGCAACTCTAGTA+TGG 0.378558 7_3:-58163439 None:intergenic
TTCTTCAGCTATATTTGCCT+TGG 0.386977 7_3:-58163695 None:intergenic
TTTATGCTTTACAAACTAAT+GGG 0.398548 7_3:+58164724 Msa1112190:CDS
GTGAGAATCTTGATTGTAGA+TGG 0.398863 7_3:-58161600 None:intergenic
ATATACTTTACAGGTATGAT+TGG 0.401660 7_3:+58166321 Msa1112190:intron
CGCGGTATCTTGAGCAGCAT+GGG 0.404406 7_3:-58166051 None:intergenic
AGGTATTCCAATATCAATAT+CGG 0.409099 7_3:-58164011 None:intergenic
ACGATGAGTGCCTATGGTTT+AGG 0.409248 7_3:+58166383 Msa1112190:CDS
CCAAAGTACAAACAGATTCA+TGG 0.410036 7_3:-58167315 None:intergenic
ATGTGACAACAACTTTGTTC+TGG 0.416582 7_3:+58161746 Msa1112190:CDS
TACCGCGTTTATTCGATCCT+TGG 0.419818 7_3:+58166067 Msa1112190:CDS
ATAATCATCACCTTGAGGTT+TGG 0.432877 7_3:-58165690 None:intergenic
GGGACTGCAAACTTGCTTAG+TGG 0.435026 7_3:+58165162 Msa1112190:intron
ATTTGAGGTGTGAAAAGAAA+AGG 0.437729 7_3:-58161575 None:intergenic
TTTGAGGTGTGAAAAGAAAA+GGG 0.438964 7_3:-58161574 None:intergenic
AAGAATATCTTGACCAATCC+AGG 0.442943 7_3:-58165478 None:intergenic
TCCAATTTCAATTGATGGTG+TGG 0.445372 7_3:+58163346 Msa1112190:CDS
TTTACTAACCAAGTGTAAAT+GGG 0.447535 7_3:-58166577 None:intergenic
CCATGAATCTGTTTGTACTT+TGG 0.451169 7_3:+58167315 Msa1112190:three_prime_UTR
GTGCTTCTTACTGGTCTGCC+TGG 0.461814 7_3:+58164336 Msa1112190:CDS
GGAGACTTATAACAAATCAT+AGG 0.463251 7_3:+58167156 Msa1112190:three_prime_UTR
AACACCCTCTCTGGCAGTCC+AGG 0.466046 7_3:-58164354 None:intergenic
CTTCCTATATGACATCTTCT+GGG 0.469044 7_3:+58165844 Msa1112190:CDS
TTTACAAACTAATGGGAAGA+TGG 0.472450 7_3:+58164731 Msa1112190:CDS
CCCTCTTGACTGTTAGATGT+TGG 0.473230 7_3:+58167287 Msa1112190:three_prime_UTR
TGGGGTGGTTACAGTGTCAT+CGG 0.481076 7_3:+58166087 Msa1112190:CDS
ACACCCAGAAGATGTCATAT+AGG 0.489454 7_3:-58165847 None:intergenic
ACAAAGTTGTTGTCACATCC+AGG 0.490168 7_3:-58161741 None:intergenic
TAGCTTTGAATTTGATGGAT+GGG 0.490494 7_3:+58166525 Msa1112190:CDS
GCGGGAGATTACTCGTCTAC+TGG 0.490969 7_3:-58167105 None:intergenic
TTAGGTTTGCTACAACAGTC+AGG 0.492193 7_3:-58163467 None:intergenic
TGCAAGATTTGGACCTACAT+TGG 0.494196 7_3:+58163394 Msa1112190:CDS
TTGCTCAATAACACCCTCTC+TGG 0.497863 7_3:-58164363 None:intergenic
AACACAGAGAAGAAGAAGAT+AGG 0.498115 7_3:-58161651 None:intergenic
ACCTGCTGTCATGCTTCCAC+TGG 0.500327 7_3:+58164030 Msa1112190:CDS
ATGTGAAACAGCACCGAAGA+AGG 0.501888 7_3:-58165382 None:intergenic
ATACTCTCCACGACGTCCAC+AGG 0.502854 7_3:+58164262 Msa1112190:CDS
TCTTGACTGTTAGATGTTGG+AGG 0.506148 7_3:+58167290 Msa1112190:three_prime_UTR
TATGTGAAAGTACCCTTCTT+CGG 0.508554 7_3:+58165369 Msa1112190:CDS
CCATGAGAGTGTGATGATAG+TGG 0.511765 7_3:+58165889 Msa1112190:CDS
AAGAAGATAGGTGTAAAAGA+AGG 0.514055 7_3:-58161639 None:intergenic
CTGATTATAAATAACGCTAA+AGG 0.517532 7_3:+58163736 Msa1112190:CDS
TGGTAGTACAAAGGAAGAAG+AGG 0.519622 7_3:-58161493 None:intergenic
GTCATGCTTCCACTGGATGC+CGG 0.519867 7_3:+58164037 Msa1112190:CDS
TTGTGGACGATGAGTGCCTA+TGG 0.521690 7_3:+58166377 Msa1112190:CDS
CCACTATCATCACACTCTCA+TGG 0.522407 7_3:-58165889 None:intergenic
GGGACTATATACAGCAAAGC+TGG 0.523296 7_3:-58166557 None:intergenic
CCAGTAAGAAGCACAGAGAA+TGG 0.528439 7_3:-58164327 None:intergenic
TCCAACATCTAACAGTCAAG+AGG 0.532187 7_3:-58167288 None:intergenic
GAAAATGCTACTAGAAGCCC+TGG 0.532953 7_3:-58166129 None:intergenic
GCAAATATAGCTGAAGAAGC+TGG 0.537504 7_3:+58163700 Msa1112190:CDS
GTGCCTTGTACAATATCGTT+AGG 0.539714 7_3:-58167232 None:intergenic
TCTGCCTGGACTGCCAGAGA+GGG 0.540666 7_3:+58164350 Msa1112190:CDS
TTCGAGCAGGATACTTCTTG+TGG 0.550885 7_3:+58166360 Msa1112190:CDS
CGTGTATCGTATGCCTGGAT+TGG 0.553817 7_3:+58165465 Msa1112190:CDS
AGTATTGCTCCTAAGAAACC+TGG 0.554160 7_3:+58161723 Msa1112190:CDS
AGCGTTATTTATAATCAGGA+TGG 0.554823 7_3:-58163731 None:intergenic
GAAGAAGAGGAAATCGTGAA+GGG 0.554969 7_3:-58161480 None:intergenic
CAGCCTAACGATATTGTACA+AGG 0.555015 7_3:+58167229 Msa1112190:three_prime_UTR
GTCTGCCTGGACTGCCAGAG+AGG 0.555701 7_3:+58164349 Msa1112190:CDS
ACGCGGTATCTTGAGCAGCA+TGG 0.557275 7_3:-58166052 None:intergenic
TCCTCTTTGATGTGAGGGCA+AGG 0.564220 7_3:-58167075 None:intergenic
ATAGCTTTGAATTTGATGGA+TGG 0.564608 7_3:+58166524 Msa1112190:CDS
CTTCTAAATATAGAGAATGC+TGG 0.565274 7_3:+58164631 Msa1112190:CDS
ATGGTTCATTGATGTTCTGG+TGG 0.565632 7_3:+58164750 Msa1112190:CDS
CAGCGAATGCTATGCAGAAG+GGG 0.567384 7_3:-58165422 None:intergenic
TCCAGTGGAAGCATGACAGC+AGG 0.569868 7_3:-58164031 None:intergenic
GGTGATAAGAGTGGAGAAGA+TGG 0.570626 7_3:+58166024 Msa1112190:CDS
AACCTACAATACTATTCCGC+GGG 0.570740 7_3:-58167123 None:intergenic
CTATAGCATACCTAAACCAT+AGG 0.572085 7_3:-58166393 None:intergenic
TCAATTGATGGTGTGGAAAG+CGG 0.573126 7_3:+58163353 Msa1112190:CDS
ATAGCATTCGCTGTGGTTTG+GGG 0.575530 7_3:+58165432 Msa1112190:CDS
AGCGGCGAGTATGTCGGTGT+TGG 0.576766 7_3:+58163371 Msa1112190:CDS
ACAGCGAATGCTATGCAGAA+GGG 0.578803 7_3:-58165423 None:intergenic
TGATGATCCTCTTTGATGTG+AGG 0.582482 7_3:-58167081 None:intergenic
TATATAGTCCCATTTACACT+TGG 0.584363 7_3:+58166569 Msa1112190:CDS
AAAATGTTCATAGTTTCAGA+TGG 0.586719 7_3:+58165325 Msa1112190:intron
AGATGAAGGTGGTAGTACAA+AGG 0.588109 7_3:-58161502 None:intergenic
AAGGCTTCACCGGCATCCAG+TGG 0.588506 7_3:-58164046 None:intergenic
CGTTTATTCGATCCTTGGGG+TGG 0.589284 7_3:+58166072 Msa1112190:CDS
CAATCCAGGCATACGATACA+CGG 0.590284 7_3:-58165464 None:intergenic
GCGAAGAGGAACCTTCGAGC+AGG 0.593050 7_3:+58166347 Msa1112190:CDS
TATATACAAAACAAGTCCAC+AGG 0.595990 7_3:+58164076 Msa1112190:CDS
TTGAGGTGTGAAAAGAAAAG+GGG 0.596596 7_3:-58161573 None:intergenic
CACAGCGAATGCTATGCAGA+AGG 0.597296 7_3:-58165424 None:intergenic
TTGAATTTGATGGATGGGCA+TGG 0.598006 7_3:+58166530 Msa1112190:CDS
TTGTCATTGGGAAAGAAGAG+AGG 0.601284 7_3:+58167012 Msa1112190:CDS
CCAGAAGATGTCATATAGGA+AGG 0.604622 7_3:-58165843 None:intergenic
CCAACATCTAACAGTCAAGA+GGG 0.606250 7_3:-58167287 None:intergenic
TTGTGAAACTACATTGTCCT+CGG 0.612612 7_3:-58163672 None:intergenic
TGTCCAAATACCAAACCTCA+AGG 0.614521 7_3:+58165680 Msa1112190:CDS
GATGATCCTCTTTGATGTGA+GGG 0.616637 7_3:-58167080 None:intergenic
AAACCTACAATACTATTCCG+CGG 0.619560 7_3:-58167124 None:intergenic
GGTGTGAAAAGAAAAGGGGT+TGG 0.620289 7_3:-58161569 None:intergenic
TGTGAAACAGCACCGAAGAA+GGG 0.620570 7_3:-58165381 None:intergenic
GCTACAACAGTCAGGAGGGT+CGG 0.621755 7_3:-58163459 None:intergenic
AAGAAGAGGAAATCGTGAAG+GGG 0.624384 7_3:-58161479 None:intergenic
GGTATGATTGGTTAGCGAAG+AGG 0.627965 7_3:+58166333 Msa1112190:intron
ACAGTCAGGAGGGTCGGCAA+TGG 0.630961 7_3:-58163453 None:intergenic
GTAGCTCGCGGTGATAAGAG+TGG 0.630975 7_3:+58166015 Msa1112190:CDS
GTTTGCTACAACAGTCAGGA+GGG 0.632295 7_3:-58163463 None:intergenic
GTGGAAAGCGGCGAGTATGT+CGG 0.632476 7_3:+58163365 Msa1112190:CDS
GGAAGAAGAGGAAATCGTGA+AGG 0.633839 7_3:-58161481 None:intergenic
TGATTGTAGATGGAAATTTG+AGG 0.635882 7_3:-58161590 None:intergenic
CCGCGTTTATTCGATCCTTG+GGG 0.643328 7_3:+58166069 Msa1112190:CDS
ACATCGACCTGTGGACGTCG+TGG 0.644315 7_3:-58164269 None:intergenic
ACAAGAAGTATCCTGCTCGA+AGG 0.648586 7_3:-58166358 None:intergenic
TTACAGTGTCATCGGTTTCG+GGG 0.651346 7_3:+58166095 Msa1112190:CDS
AACGAATGAAAGTGCTGCCG+TGG 0.651931 7_3:-58164680 None:intergenic
GGTTTGCTACAACAGTCAGG+AGG 0.652355 7_3:-58163464 None:intergenic
GCCTTGCCCTCACATCAAAG+AGG 0.653911 7_3:+58167074 Msa1112190:CDS
TCAAAGCTATGTATGTGACA+AGG 0.659484 7_3:-58166511 None:intergenic
ACAATGTAGTTTCACAACCA+AGG 0.675341 7_3:+58163678 Msa1112190:CDS
AGCGAATGCTATGCAGAAGG+GGG 0.677222 7_3:-58165421 None:intergenic
ACTTCTTTACAGGTAGCTCG+CGG 0.683752 7_3:+58166003 Msa1112190:intron
CTTCTGCATAGCATTCGCTG+TGG 0.687281 7_3:+58165425 Msa1112190:CDS
GCGGTATCTTGAGCAGCATG+GGG 0.687520 7_3:-58166050 None:intergenic
ACTTCTGCAACATCGACCTG+TGG 0.688487 7_3:-58164278 None:intergenic
ATGACACTGTAACCACCCCA+AGG 0.695167 7_3:-58166084 None:intergenic
CCCCAAGGATCGAATAAACG+CGG 0.705852 7_3:-58166069 None:intergenic
AGTAGACGAGTAATCTCCCG+CGG 0.729711 7_3:+58167107 Msa1112190:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATATATAGAAATTTA+TGG + chr7_3:58165585-58165604 Msa1112190:intron 10.0%
!! TATATCTTTGTAAAGAAAAA+TGG - chr7_3:58161531-58161550 None:intergenic 15.0%
!!! TTAATAGAATTGATTTCTAT+TGG + chr7_3:58162182-58162201 Msa1112190:intron 15.0%
!! ACTTTCTAATAGTTAATAAA+GGG - chr7_3:58162456-58162475 None:intergenic 15.0%
!! AAAAAAATAAATTACACTAC+AGG - chr7_3:58163806-58163825 None:intergenic 15.0%
!!! AAAATTTAGTATTGGAAAAA+AGG - chr7_3:58163830-58163849 None:intergenic 15.0%
!!! TTTTGTTTTTCTAACAAATT+AGG - chr7_3:58163897-58163916 None:intergenic 15.0%
!!! GTTTTGTATATATTTTTTCA+AGG - chr7_3:58164068-58164087 None:intergenic 15.0%
!!! AATGTTATGTATTTTGTTAA+TGG + chr7_3:58166274-58166293 Msa1112190:intron 15.0%
!! TAACAAATCAAAAAAAATAG+CGG + chr7_3:58166675-58166694 Msa1112190:intron 15.0%
!! ATATACCAAAATTAGCATAA+TGG - chr7_3:58162295-58162314 None:intergenic 20.0%
!!! AAAAAAGAGTAAGTTTTAAG+TGG - chr7_3:58162414-58162433 None:intergenic 20.0%
!!! AGTTAATAAAGGGTAATTTT+TGG - chr7_3:58162446-58162465 None:intergenic 20.0%
!! CACTTTCTAATAGTTAATAA+AGG - chr7_3:58162457-58162476 None:intergenic 20.0%
!! TATTAACTATTAGAAAGTGA+TGG + chr7_3:58162458-58162477 Msa1112190:intron 20.0%
!! AAGAATGAGAAAAATTCTTA+AGG + chr7_3:58162493-58162512 Msa1112190:intron 20.0%
!! TATTATTTATAAGCTTGTCA+AGG - chr7_3:58162754-58162773 None:intergenic 20.0%
!! AAAAAAAGAAGTTAATGTTG+AGG + chr7_3:58163086-58163105 Msa1112190:intron 20.0%
!! AATGTATTCAAAGTTTGAAA+TGG + chr7_3:58163114-58163133 Msa1112190:intron 20.0%
!! TACTCATAGAAAATAGAAAT+AGG - chr7_3:58163258-58163277 None:intergenic 20.0%
!!! TATTTTCTATGAGTATTGAT+AGG + chr7_3:58163263-58163282 Msa1112190:intron 20.0%
!! ATAGAACATACTGAAAAATA+AGG + chr7_3:58163515-58163534 Msa1112190:intron 20.0%
!!! AAATTCTAGAGCTTTTAATA+TGG - chr7_3:58163578-58163597 None:intergenic 20.0%
!! ACAAACTGAAAATTTAGTAT+TGG - chr7_3:58163838-58163857 None:intergenic 20.0%
!!! AATACTAAATTTTCAGTTTG+TGG + chr7_3:58163837-58163856 Msa1112190:intron 20.0%
!!! ATTTTATATCCTTATTTTGC+AGG + chr7_3:58163959-58163978 Msa1112190:intron 20.0%
!! GAAAGAAAACAAACTATTAA+AGG - chr7_3:58164499-58164518 None:intergenic 20.0%
!!! ATTATTTTGGTCATTTATGA+AGG + chr7_3:58164527-58164546 Msa1112190:intron 20.0%
!! TTTATGCTTTACAAACTAAT+GGG + chr7_3:58164724-58164743 Msa1112190:CDS 20.0%
!!! ATATTTTGTAACTTCAAATC+CGG - chr7_3:58164950-58164969 None:intergenic 20.0%
!!! ATAATTTAAAAGTGTCTCAA+AGG + chr7_3:58164976-58164995 Msa1112190:intron 20.0%
!! ATTTATTATTCCAAACACTT+TGG + chr7_3:58165038-58165057 Msa1112190:intron 20.0%
!!! TGTCAATTCAATATCATTTT+GGG - chr7_3:58165303-58165322 None:intergenic 20.0%
!!! ATGTCAATTCAATATCATTT+TGG - chr7_3:58165304-58165323 None:intergenic 20.0%
!!! ATTTTTAATCTTCTCTTTTC+AGG + chr7_3:58165626-58165645 Msa1112190:intron 20.0%
!!! TTTTTAATCTTCTCTTTTCA+GGG + chr7_3:58165627-58165646 Msa1112190:intron 20.0%
!!! AGTGTCTTTATTTGTAAAAT+AGG - chr7_3:58165775-58165794 None:intergenic 20.0%
!!! TTTTACAAATAAAGACACTA+AGG + chr7_3:58165776-58165795 Msa1112190:intron 20.0%
!! AAATCAAACTTTGTATAGAA+TGG - chr7_3:58165946-58165965 None:intergenic 20.0%
!!! TAATTTTCCTTGATTATGTT+TGG + chr7_3:58166444-58166463 Msa1112190:intron 20.0%
!!! TTTTTGAGAAAATTGTTCAT+AGG + chr7_3:58167356-58167375 Msa1112190:three_prime_UTR 20.0%
! AAGAAAAATGGAAAAGATGA+AGG - chr7_3:58161519-58161538 None:intergenic 25.0%
!!! TTTTGATTTGATTTGATGCT+AGG + chr7_3:58161872-58161891 Msa1112190:intron 25.0%
!!! TATTTTTGTGGAAAATTGAG+TGG + chr7_3:58161941-58161960 Msa1112190:intron 25.0%
!! ATTTTTGTGGAAAATTGAGT+GGG + chr7_3:58161942-58161961 Msa1112190:intron 25.0%
! ATACCAGAATGATTTGATTA+AGG + chr7_3:58162153-58162172 Msa1112190:intron 25.0%
!!! TTTGTTTGTTTTTATTTCCC+TGG + chr7_3:58162236-58162255 Msa1112190:intron 25.0%
!! AGATTCCATTATGCTAATTT+TGG + chr7_3:58162287-58162306 Msa1112190:intron 25.0%
! GATTGTTTGGATAAACTAAA+CGG - chr7_3:58162338-58162357 None:intergenic 25.0%
! AAAAATTCTTAAGGTCTGTT+TGG + chr7_3:58162502-58162521 Msa1112190:intron 25.0%
!! TACAATTTTCGTAATCCAAA+CGG - chr7_3:58162703-58162722 None:intergenic 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr7_3:58162814-58162833 Msa1112190:intron 25.0%
! TCTTTGGATAAACAACTTAA+GGG - chr7_3:58162841-58162860 None:intergenic 25.0%
!!! TCTTGATTAGTCTTCATTAA+TGG + chr7_3:58163050-58163069 Msa1112190:intron 25.0%
!!! TCTTCATTAATGGTTTGTTT+TGG + chr7_3:58163060-58163079 Msa1112190:intron 25.0%
! AAAGTTCCAATTTCAATTGA+TGG + chr7_3:58163341-58163360 Msa1112190:CDS 25.0%
!!! TTTTCTTTTGATTCCAATGT+AGG - chr7_3:58163410-58163429 None:intergenic 25.0%
! AACTAGAATACCTTATTCTT+AGG - chr7_3:58163488-58163507 None:intergenic 25.0%
! CTTTAGCGTTATTTATAATC+AGG - chr7_3:58163738-58163757 None:intergenic 25.0%
! CTGATTATAAATAACGCTAA+AGG + chr7_3:58163736-58163755 Msa1112190:CDS 25.0%
!! AATTTTCAGTTTGTGGTTAT+AGG + chr7_3:58163844-58163863 Msa1112190:intron 25.0%
! AATGAAACCGATATTGATAT+TGG + chr7_3:58164004-58164023 Msa1112190:CDS 25.0%
! AGGTATTCCAATATCAATAT+CGG - chr7_3:58164014-58164033 None:intergenic 25.0%
! GTAATTAATTATGCTTTCCT+TGG + chr7_3:58164136-58164155 Msa1112190:intron 25.0%
!!! AATTTTTTTAAATCTCCCTG+TGG - chr7_3:58164162-58164181 None:intergenic 25.0%
!!! TTACATTTTGATACCTAATC+TGG + chr7_3:58164185-58164204 Msa1112190:intron 25.0%
!!! ATGTTGCAGAAGTATTTTTA+TGG + chr7_3:58164288-58164307 Msa1112190:CDS 25.0%
!!! AGAAGTATTTTTATGGCTTA+TGG + chr7_3:58164295-58164314 Msa1112190:CDS 25.0%
! CGAATAAATTTGACATGAAA+AGG - chr7_3:58164415-58164434 None:intergenic 25.0%
!!! CTTTCTGAGATGAATTATTT+TGG + chr7_3:58164514-58164533 Msa1112190:intron 25.0%
! TATAGATAATTTACCATTGC+AGG + chr7_3:58164594-58164613 Msa1112190:intron 25.0%
! GTTTATGCTTTACAAACTAA+TGG + chr7_3:58164723-58164742 Msa1112190:CDS 25.0%
!! AATTTGAAAACCAAAGTGTT+TGG - chr7_3:58165051-58165070 None:intergenic 25.0%
! AAAATGTTCATAGTTTCAGA+TGG + chr7_3:58165325-58165344 Msa1112190:intron 25.0%
! AAAACATGAACCAAAGAAAA+AGG - chr7_3:58165549-58165568 None:intergenic 25.0%
!!! CTTCATTTTTTTACTCTTTC+TGG + chr7_3:58165718-58165737 Msa1112190:intron 25.0%
!! AGGTATACATTCTTTTTACA+AGG + chr7_3:58165796-58165815 Msa1112190:intron 25.0%
!! ATACATTCTTTTTACAAGGT+TGG + chr7_3:58165800-58165819 Msa1112190:intron 25.0%
! TTTGTATAGAATGGTAGTAA+CGG - chr7_3:58165937-58165956 None:intergenic 25.0%
!!! AAAGTGTAGAGTTTTTTTAG+GGG - chr7_3:58165982-58166001 None:intergenic 25.0%
!!! GAAAGTGTAGAGTTTTTTTA+GGG - chr7_3:58165983-58166002 None:intergenic 25.0%
!!! TGAAAGTGTAGAGTTTTTTT+AGG - chr7_3:58165984-58166003 None:intergenic 25.0%
! GTTAAATTGAAAATCTCACA+TGG + chr7_3:58166158-58166177 Msa1112190:intron 25.0%
! ATCCTTGTAACAAAAAAGTT+TGG + chr7_3:58166240-58166259 Msa1112190:intron 25.0%
!!! TTCCAAACTTTTTTGTTACA+AGG - chr7_3:58166245-58166264 None:intergenic 25.0%
! ATATACTTTACAGGTATGAT+TGG + chr7_3:58166321-58166340 Msa1112190:intron 25.0%
!! ATGCTATAGTTTTCAATGAT+AGG + chr7_3:58166407-58166426 Msa1112190:intron 25.0%
!!! ATACATAGCTTTGAATTTGA+TGG + chr7_3:58166520-58166539 Msa1112190:CDS 25.0%
! TTTACTAACCAAGTGTAAAT+GGG - chr7_3:58166580-58166599 None:intergenic 25.0%
!! TTTTACTAACCAAGTGTAAA+TGG - chr7_3:58166581-58166600 None:intergenic 25.0%
!!! TTTGATTTGTTATTGACTTC+AGG - chr7_3:58166667-58166686 None:intergenic 25.0%
! TATCGTTAAATAGATAACAC+TGG - chr7_3:58166721-58166740 None:intergenic 25.0%
! TAAGAAACATGATAAGACTT+GGG - chr7_3:58166866-58166885 None:intergenic 25.0%
! ATAAGAAACATGATAAGACT+TGG - chr7_3:58166867-58166886 None:intergenic 25.0%
! ACCTAATAATATGCTTCATA+TGG - chr7_3:58166934-58166953 None:intergenic 25.0%
!!! TATTGTAGGTTTTAGTTTAC+AGG + chr7_3:58167135-58167154 Msa1112190:three_prime_UTR 25.0%
AAAAATGGAAAAGATGAAGG+TGG - chr7_3:58161516-58161535 None:intergenic 30.0%
! TTTGAGGTGTGAAAAGAAAA+GGG - chr7_3:58161577-58161596 None:intergenic 30.0%
! ATTTGAGGTGTGAAAAGAAA+AGG - chr7_3:58161578-58161597 None:intergenic 30.0%
TGATTGTAGATGGAAATTTG+AGG - chr7_3:58161593-58161612 None:intergenic 30.0%
AAGAAGATAGGTGTAAAAGA+AGG - chr7_3:58161642-58161661 None:intergenic 30.0%
!!! TGCTTTGAAATTTTCTTGCT+TGG + chr7_3:58161802-58161821 Msa1112190:intron 30.0%
AAGCCTTAATCAAATCATTC+TGG - chr7_3:58162159-58162178 None:intergenic 30.0%
TTTACCTATTGCAAAAACCA+GGG - chr7_3:58162256-58162275 None:intergenic 30.0%
! TTTTACCTATTGCAAAAACC+AGG - chr7_3:58162257-58162276 None:intergenic 30.0%
TGACAACTTTCATGATTGTT+TGG - chr7_3:58162351-58162370 None:intergenic 30.0%
TAACTATTAGAAAGTGATGG+TGG + chr7_3:58162461-58162480 Msa1112190:intron 30.0%
AACTATTAGAAAGTGATGGT+GGG + chr7_3:58162462-58162481 Msa1112190:intron 30.0%
!! CTTATTTCTATAAGCTCTCT+AGG + chr7_3:58162572-58162591 Msa1112190:intron 30.0%
CTTGTTCTATAAGCGTTAAA+GGG + chr7_3:58162676-58162695 Msa1112190:intron 30.0%
! ACAATTTTCGTAATCCAAAC+GGG - chr7_3:58162702-58162721 None:intergenic 30.0%
GTCTTTGGATAAACAACTTA+AGG - chr7_3:58162842-58162861 None:intergenic 30.0%
GATTTCAGCAAACAACTATA+TGG + chr7_3:58163232-58163251 Msa1112190:intron 30.0%
TAACCTATCGAAAGAAAAAC+CGG - chr7_3:58163322-58163341 None:intergenic 30.0%
TTGTAGCAAACCTAAGAATA+AGG + chr7_3:58163475-58163494 Msa1112190:CDS 30.0%
! CTTGAAATTTTGTTAGCTCA+CGG + chr7_3:58163630-58163649 Msa1112190:intron 30.0%
! TTGAAATTTTGTTAGCTCAC+GGG + chr7_3:58163631-58163650 Msa1112190:intron 30.0%
AGCGTTATTTATAATCAGGA+TGG - chr7_3:58163734-58163753 None:intergenic 30.0%
TTGAAAAGTCCTGCAAAATA+AGG - chr7_3:58163971-58163990 None:intergenic 30.0%
!!! ATATTTTTTCAAGGCTTCAC+CGG - chr7_3:58164059-58164078 None:intergenic 30.0%
TATATACAAAACAAGTCCAC+AGG + chr7_3:58164076-58164095 Msa1112190:CDS 30.0%
ATTTGACATGAAAAGGAACT+AGG - chr7_3:58164408-58164427 None:intergenic 30.0%
CTTCTAAATATAGAGAATGC+TGG + chr7_3:58164631-58164650 Msa1112190:CDS 30.0%
!!! TTTTTTGGAAATAAGCACCA+CGG + chr7_3:58164663-58164682 Msa1112190:CDS 30.0%
TTTACAAACTAATGGGAAGA+TGG + chr7_3:58164731-58164750 Msa1112190:CDS 30.0%
!! AGGTGAGTTATTATTTTTCC+AGG + chr7_3:58164797-58164816 Msa1112190:intron 30.0%
!! AGTTATTATTTTTCCAGGCT+TGG + chr7_3:58164802-58164821 Msa1112190:intron 30.0%
TTTATTCTTTGCATGCTTTC+AGG + chr7_3:58165141-58165160 Msa1112190:intron 30.0%
TTATTCTTTGCATGCTTTCA+GGG + chr7_3:58165142-58165161 Msa1112190:intron 30.0%
CTATACAATGTCAACTTTAC+AGG + chr7_3:58165207-58165226 Msa1112190:intron 30.0%
AGTTTGACCAAAGAAACAAT+GGG - chr7_3:58165526-58165545 None:intergenic 30.0%
!! CTTTGGTTCATGTTTTATAC+TGG + chr7_3:58165553-58165572 Msa1112190:intron 30.0%
TTTGAATAATCATCACCTTG+AGG - chr7_3:58165698-58165717 None:intergenic 30.0%
!!! TTTTTTACTCTTTCTGGCTA+TGG + chr7_3:58165724-58165743 Msa1112190:intron 30.0%
TTGTATAGAATGGTAGTAAC+GGG - chr7_3:58165936-58165955 None:intergenic 30.0%
! TTCTAGTAGCATTTTCGTTA+AGG + chr7_3:58166136-58166155 Msa1112190:CDS 30.0%
TAGTTAACATTAGTAGTCCA+AGG - chr7_3:58166194-58166213 None:intergenic 30.0%
! GTAACAAAAAAGTTTGGAAC+AGG + chr7_3:58166246-58166265 Msa1112190:intron 30.0%
ACTCTGTTGATATACTTTAC+AGG + chr7_3:58166312-58166331 Msa1112190:intron 30.0%
CTGTAATCCAAACATAATCA+AGG - chr7_3:58166454-58166473 None:intergenic 30.0%
!! ATAGCTTTGAATTTGATGGA+TGG + chr7_3:58166524-58166543 Msa1112190:CDS 30.0%
!! TAGCTTTGAATTTGATGGAT+GGG + chr7_3:58166525-58166544 Msa1112190:CDS 30.0%
TATATAGTCCCATTTACACT+TGG + chr7_3:58166569-58166588 Msa1112190:CDS 30.0%
GCCATATGAAGCATATTATT+AGG + chr7_3:58166930-58166949 Msa1112190:intron 30.0%
AAACATTCTTGTGTATATGC+AGG + chr7_3:58166982-58167001 Msa1112190:intron 30.0%
! AACTTGAGATTTTATGGACA+AGG + chr7_3:58167037-58167056 Msa1112190:CDS 30.0%
! ACTTGAGATTTTATGGACAA+GGG + chr7_3:58167038-58167057 Msa1112190:CDS 30.0%
GGAGACTTATAACAAATCAT+AGG + chr7_3:58167156-58167175 Msa1112190:three_prime_UTR 30.0%
TTGAGGTGTGAAAAGAAAAG+GGG - chr7_3:58161576-58161595 None:intergenic 35.0%
GTGAGAATCTTGATTGTAGA+TGG - chr7_3:58161603-58161622 None:intergenic 35.0%
AACACAGAGAAGAAGAAGAT+AGG - chr7_3:58161654-58161673 None:intergenic 35.0%
! CTTCTTACTTTCTCTTTTGC+TGG + chr7_3:58161681-58161700 Msa1112190:CDS 35.0%
ATGTGACAACAACTTTGTTC+TGG + chr7_3:58161746-58161765 Msa1112190:CDS 35.0%
GCTTGAAATGCTGTTCTTAT+TGG + chr7_3:58161830-58161849 Msa1112190:intron 35.0%
!!! GAAGCTTGTTTTTTGAGCAT+TGG + chr7_3:58162030-58162049 Msa1112190:intron 35.0%
!!! TTTTTTGAGCATTGGATGCT+TGG + chr7_3:58162038-58162057 Msa1112190:intron 35.0%
!! ATTTCCCTGGTTTTTGCAAT+AGG + chr7_3:58162249-58162268 Msa1112190:intron 35.0%
GACTTGATTCTATCTTGTCA+TGG + chr7_3:58162618-58162637 Msa1112190:intron 35.0%
GCTTGTTCTATAAGCGTTAA+AGG + chr7_3:58162675-58162694 Msa1112190:intron 35.0%
AAGTCAGTTACTCTAGGTTA+AGG - chr7_3:58162866-58162885 None:intergenic 35.0%
ACAGTTAAGTCAGTTACTCT+AGG - chr7_3:58162872-58162891 None:intergenic 35.0%
TCTCTTGCAGCAATGTAAAA+AGG + chr7_3:58162926-58162945 Msa1112190:intron 35.0%
AAGACTAATCAAGAAGACAG+AGG - chr7_3:58163044-58163063 None:intergenic 35.0%
! AGTTTGAAATGGTGAGAACA+AGG + chr7_3:58163125-58163144 Msa1112190:intron 35.0%
!!! CGTGGAAGTATGAGTTTTTT+CGG + chr7_3:58163287-58163306 Msa1112190:intron 35.0%
!! TCCAATTTCAATTGATGGTG+TGG + chr7_3:58163346-58163365 Msa1112190:CDS 35.0%
TCCACACCATCAATTGAAAT+TGG - chr7_3:58163350-58163369 None:intergenic 35.0%
CGTGAGCTAACAAAATTTCA+AGG - chr7_3:58163632-58163651 None:intergenic 35.0%
TTGTGAAACTACATTGTCCT+CGG - chr7_3:58163675-58163694 None:intergenic 35.0%
ACAATGTAGTTTCACAACCA+AGG + chr7_3:58163678-58163697 Msa1112190:CDS 35.0%
TTCTTCAGCTATATTTGCCT+TGG - chr7_3:58163698-58163717 None:intergenic 35.0%
CAGTTTGTGGTTATAGGTTT+CGG + chr7_3:58163850-58163869 Msa1112190:intron 35.0%
!! TTTTGCAGGACTTTTCAAGA+TGG + chr7_3:58163973-58163992 Msa1112190:intron 35.0%
ATGTTTCACTTCTTGTGTGA+AGG + chr7_3:58164100-58164119 Msa1112190:intron 35.0%
! TTTTTATGGCTTATGGCTGT+TGG + chr7_3:58164302-58164321 Msa1112190:CDS 35.0%
TGAGCAAGAGAAGCTATTAA+AGG + chr7_3:58164379-58164398 Msa1112190:CDS 35.0%
TTAAAGGAATCTTCTGTGAG+AGG - chr7_3:58164483-58164502 None:intergenic 35.0%
! GCTTATTTCCAAAAAAGCAC+TGG - chr7_3:58164659-58164678 None:intergenic 35.0%
AAGATGGTTCATTGATGTTC+TGG + chr7_3:58164747-58164766 Msa1112190:CDS 35.0%
TCTTGACATTATGTTAGAGC+AGG + chr7_3:58164869-58164888 Msa1112190:intron 35.0%
! AACGCTAGGATACCAAATTT+TGG - chr7_3:58164900-58164919 None:intergenic 35.0%
!! TATGTGAAAGTACCCTTCTT+CGG + chr7_3:58165369-58165388 Msa1112190:CDS 35.0%
AAGAATATCTTGACCAATCC+AGG - chr7_3:58165481-58165500 None:intergenic 35.0%
! TTGCTTTCCCATTGTTTCTT+TGG + chr7_3:58165516-58165535 Msa1112190:intron 35.0%
GAGTTTGACCAAAGAAACAA+TGG - chr7_3:58165527-58165546 None:intergenic 35.0%
! TGGTCAAACTCCTTTTTCTT+TGG + chr7_3:58165536-58165555 Msa1112190:intron 35.0%
! GGGTATCGCTTTGATAATTA+CGG + chr7_3:58165647-58165666 Msa1112190:intron 35.0%
ATAATCATCACCTTGAGGTT+TGG - chr7_3:58165693-58165712 None:intergenic 35.0%
CTTCCTATATGACATCTTCT+GGG + chr7_3:58165844-58165863 Msa1112190:CDS 35.0%
CTACACTTTCACTTCTTTAC+AGG + chr7_3:58165993-58166012 Msa1112190:intron 35.0%
CTATAGCATACCTAAACCAT+AGG - chr7_3:58166396-58166415 None:intergenic 35.0%
ACCTGTAGATCAAAATCCAA+GGG - chr7_3:58166489-58166508 None:intergenic 35.0%
TCAAAGCTATGTATGTGACA+AGG - chr7_3:58166514-58166533 None:intergenic 35.0%
AATAGATAACACTGGTGTAG+TGG - chr7_3:58166713-58166732 None:intergenic 35.0%
!!! GTTTAGTGGTTTTAGTGTAG+CGG - chr7_3:58166792-58166811 None:intergenic 35.0%
TATGCTTCATATGGCATAGT+GGG - chr7_3:58166925-58166944 None:intergenic 35.0%
ATATGCTTCATATGGCATAG+TGG - chr7_3:58166926-58166945 None:intergenic 35.0%
CTTCTTTCCCAATGACAAAA+AGG - chr7_3:58167010-58167029 None:intergenic 35.0%
! CTTGAGATTTTATGGACAAG+GGG + chr7_3:58167039-58167058 Msa1112190:CDS 35.0%
! TTGAGATTTTATGGACAAGG+GGG + chr7_3:58167040-58167059 Msa1112190:CDS 35.0%
AAACCTACAATACTATTCCG+CGG - chr7_3:58167127-58167146 None:intergenic 35.0%
CCAAAGTACAAACAGATTCA+TGG - chr7_3:58167318-58167337 None:intergenic 35.0%
CCATGAATCTGTTTGTACTT+TGG + chr7_3:58167315-58167334 Msa1112190:three_prime_UTR 35.0%
AAGAAGAGGAAATCGTGAAG+GGG - chr7_3:58161482-58161501 None:intergenic 40.0%
GAAGAAGAGGAAATCGTGAA+GGG - chr7_3:58161483-58161502 None:intergenic 40.0%
TGGTAGTACAAAGGAAGAAG+AGG - chr7_3:58161496-58161515 None:intergenic 40.0%
AGATGAAGGTGGTAGTACAA+AGG - chr7_3:58161505-58161524 None:intergenic 40.0%
CTTCTTCTTCTCTGTGTTCA+TGG + chr7_3:58161656-58161675 Msa1112190:CDS 40.0%
AGTATTGCTCCTAAGAAACC+TGG + chr7_3:58161723-58161742 Msa1112190:CDS 40.0%
TTGTCACATCCAGGTTTCTT+AGG - chr7_3:58161735-58161754 None:intergenic 40.0%
ACAAAGTTGTTGTCACATCC+AGG - chr7_3:58161744-58161763 None:intergenic 40.0%
!! TCTCAACTGTAGCTGTTTTC+TGG + chr7_3:58162385-58162404 Msa1112190:intron 40.0%
!! GGTCTGTTTGGATTAGCTTA+TGG + chr7_3:58162514-58162533 Msa1112190:intron 40.0%
AAACAACTTAAGGGTCCGTT+TGG - chr7_3:58162832-58162851 None:intergenic 40.0%
! ACTCTAGGTTAAGGTGTCTT+TGG - chr7_3:58162857-58162876 None:intergenic 40.0%
AAATGGTGAGAACAAGGTGA+TGG + chr7_3:58163131-58163150 Msa1112190:intron 40.0%
TCTCTTAGCTTATGTCTCTC+AGG + chr7_3:58163210-58163229 Msa1112190:intron 40.0%
!! CTATGAGTATTGATAGGTCG+TGG + chr7_3:58163269-58163288 Msa1112190:intron 40.0%
!!! GTTTTTTCGGCAGATTTGAC+CGG + chr7_3:58163300-58163319 Msa1112190:intron 40.0%
!! TGACCGGTTTTTCTTTCGAT+AGG + chr7_3:58163316-58163335 Msa1112190:intron 40.0%
!! TCAATTGATGGTGTGGAAAG+CGG + chr7_3:58163353-58163372 Msa1112190:CDS 40.0%
TGCAAGATTTGGACCTACAT+TGG + chr7_3:58163394-58163413 Msa1112190:CDS 40.0%
!! TTAGGTTTGCTACAACAGTC+AGG - chr7_3:58163470-58163489 None:intergenic 40.0%
GCAAATATAGCTGAAGAAGC+TGG + chr7_3:58163700-58163719 Msa1112190:CDS 40.0%
CAAGAAGTGAAACATACCTG+TGG - chr7_3:58164095-58164114 None:intergenic 40.0%
GCAAGACACAAAACCAGATT+AGG - chr7_3:58164201-58164220 None:intergenic 40.0%
TCATCTGAATCATCCTGCAA+TGG - chr7_3:58164610-58164629 None:intergenic 40.0%
ATGGTTCATTGATGTTCTGG+TGG + chr7_3:58164750-58164769 Msa1112190:CDS 40.0%
!! CTGGTGGTTCTGTTTTGTAT+TGG + chr7_3:58164766-58164785 Msa1112190:CDS 40.0%
!! GTGGTTCTGTTTTGTATTGG+TGG + chr7_3:58164769-58164788 Msa1112190:CDS 40.0%
!!! GTTTTGTATTGGTGGTGTTG+AGG + chr7_3:58164777-58164796 Msa1112190:CDS 40.0%
TAATCATCAAGAACCAAGCC+TGG - chr7_3:58164818-58164837 None:intergenic 40.0%
AACTTCAAATCCGGACAGAA+AGG - chr7_3:58164941-58164960 None:intergenic 40.0%
!! GACTTTAGAGCCATTTGCTA+TGG - chr7_3:58165086-58165105 None:intergenic 40.0%
!! AGCAAATGGCTCTAAAGTCA+TGG + chr7_3:58165087-58165106 Msa1112190:intron 40.0%
!! GCAAATGGCTCTAAAGTCAT+GGG + chr7_3:58165088-58165107 Msa1112190:intron 40.0%
TGTCCAAATACCAAACCTCA+AGG + chr7_3:58165680-58165699 Msa1112190:CDS 40.0%
! TCACCTTGAGGTTTGGTATT+TGG - chr7_3:58165686-58165705 None:intergenic 40.0%
!! ACTCTTTCTGGCTATGGATA+TGG + chr7_3:58165730-58165749 Msa1112190:intron 40.0%
CCAGAAGATGTCATATAGGA+AGG - chr7_3:58165846-58165865 None:intergenic 40.0%
CCTTCCTATATGACATCTTC+TGG + chr7_3:58165843-58165862 Msa1112190:CDS 40.0%
ACACCCAGAAGATGTCATAT+AGG - chr7_3:58165850-58165869 None:intergenic 40.0%
! TTCGGGGACATAATTTTACC+AGG + chr7_3:58166111-58166130 Msa1112190:CDS 40.0%
! TCGGGGACATAATTTTACCA+GGG + chr7_3:58166112-58166131 Msa1112190:CDS 40.0%
CACATGGATCACTTATTCCT+TGG + chr7_3:58166174-58166193 Msa1112190:intron 40.0%
ACAGTTTAAATCCTGTCCCT+TGG + chr7_3:58166470-58166489 Msa1112190:intron 40.0%
TAGATCAAAATCCAAGGGAC+AGG - chr7_3:58166484-58166503 None:intergenic 40.0%
!! TCCCTTGGATTTTGATCTAC+AGG + chr7_3:58166485-58166504 Msa1112190:intron 40.0%
GACCTGTAGATCAAAATCCA+AGG - chr7_3:58166490-58166509 None:intergenic 40.0%
! TTGAATTTGATGGATGGGCA+TGG + chr7_3:58166530-58166549 Msa1112190:CDS 40.0%
! CTTTTTGCGTAGTCAAACAG+CGG - chr7_3:58166826-58166845 None:intergenic 40.0%
GACTTGGGATAAGTTTCACA+AGG - chr7_3:58166851-58166870 None:intergenic 40.0%
! TGCAGGAACCTTTTTGTCAT+TGG + chr7_3:58166999-58167018 Msa1112190:intron 40.0%
! GCAGGAACCTTTTTGTCATT+GGG + chr7_3:58167000-58167019 Msa1112190:intron 40.0%
TTGTCATTGGGAAAGAAGAG+AGG + chr7_3:58167012-58167031 Msa1112190:CDS 40.0%
! GAGGCGAACTTGAGATTTTA+TGG + chr7_3:58167031-58167050 Msa1112190:CDS 40.0%
GATGATCCTCTTTGATGTGA+GGG - chr7_3:58167083-58167102 None:intergenic 40.0%
TGATGATCCTCTTTGATGTG+AGG - chr7_3:58167084-58167103 None:intergenic 40.0%
AACCTACAATACTATTCCGC+GGG - chr7_3:58167126-58167145 None:intergenic 40.0%
CAGCCTAACGATATTGTACA+AGG + chr7_3:58167229-58167248 Msa1112190:three_prime_UTR 40.0%
GTGCCTTGTACAATATCGTT+AGG - chr7_3:58167235-58167254 None:intergenic 40.0%
CCAACATCTAACAGTCAAGA+GGG - chr7_3:58167290-58167309 None:intergenic 40.0%
TCCAACATCTAACAGTCAAG+AGG - chr7_3:58167291-58167310 None:intergenic 40.0%
TCTTGACTGTTAGATGTTGG+AGG + chr7_3:58167290-58167309 Msa1112190:three_prime_UTR 40.0%
GGAAGAAGAGGAAATCGTGA+AGG - chr7_3:58161484-58161503 None:intergenic 45.0%
GGTGTGAAAAGAAAAGGGGT+TGG - chr7_3:58161572-58161591 None:intergenic 45.0%
GTGCAGACACAGAATACACT+AGG + chr7_3:58162980-58162999 Msa1112190:intron 45.0%
! GTTTGCTACAACAGTCAGGA+GGG - chr7_3:58163466-58163485 None:intergenic 45.0%
ATTATGCTTTCCTTGGCCAC+AGG + chr7_3:58164143-58164162 Msa1112190:intron 45.0%
TTATGCTTTCCTTGGCCACA+GGG + chr7_3:58164144-58164163 Msa1112190:intron 45.0%
TTTAAATCTCCCTGTGGCCA+AGG - chr7_3:58164156-58164175 None:intergenic 45.0%
! CCAGTAAGAAGCACAGAGAA+TGG - chr7_3:58164330-58164349 None:intergenic 45.0%
CCATTCTCTGTGCTTCTTAC+TGG + chr7_3:58164327-58164346 Msa1112190:CDS 45.0%
TTGCTCAATAACACCCTCTC+TGG - chr7_3:58164366-58164385 None:intergenic 45.0%
!!! TGCTGGTTCCAGTGCTTTTT+TGG + chr7_3:58164648-58164667 Msa1112190:CDS 45.0%
GAGCAGGCTACACCAAAATT+TGG + chr7_3:58164885-58164904 Msa1112190:intron 45.0%
TTGGTATCCTAGCGTTCAGA+CGG + chr7_3:58164904-58164923 Msa1112190:intron 45.0%
CACATTAGTGCCTTTCTGTC+CGG + chr7_3:58164928-58164947 Msa1112190:intron 45.0%
GTCCTGTCATCCATAGCAAA+TGG + chr7_3:58165073-58165092 Msa1112190:intron 45.0%
!! AGCCATTTGCTATGGATGAC+AGG - chr7_3:58165078-58165097 None:intergenic 45.0%
! TGTGAAACAGCACCGAAGAA+GGG - chr7_3:58165384-58165403 None:intergenic 45.0%
! ATGTGAAACAGCACCGAAGA+AGG - chr7_3:58165385-58165404 None:intergenic 45.0%
ACAGCGAATGCTATGCAGAA+GGG - chr7_3:58165426-58165445 None:intergenic 45.0%
CATAGCATTCGCTGTGGTTT+GGG + chr7_3:58165431-58165450 Msa1112190:CDS 45.0%
ATAGCATTCGCTGTGGTTTG+GGG + chr7_3:58165432-58165451 Msa1112190:CDS 45.0%
CAATCCAGGCATACGATACA+CGG - chr7_3:58165467-58165486 None:intergenic 45.0%
CCACTATCATCACACTCTCA+TGG - chr7_3:58165892-58165911 None:intergenic 45.0%
! CCATGAGAGTGTGATGATAG+TGG + chr7_3:58165889-58165908 Msa1112190:CDS 45.0%
ACTTCTTTACAGGTAGCTCG+CGG + chr7_3:58166003-58166022 Msa1112190:intron 45.0%
GGTGATAAGAGTGGAGAAGA+TGG + chr7_3:58166024-58166043 Msa1112190:CDS 45.0%
TACCGCGTTTATTCGATCCT+TGG + chr7_3:58166067-58166086 Msa1112190:CDS 45.0%
ACCGCGTTTATTCGATCCTT+GGG + chr7_3:58166068-58166087 Msa1112190:CDS 45.0%
!! GGTTACAGTGTCATCGGTTT+CGG + chr7_3:58166093-58166112 Msa1112190:CDS 45.0%
!! GTTACAGTGTCATCGGTTTC+GGG + chr7_3:58166094-58166113 Msa1112190:CDS 45.0%
!! TTACAGTGTCATCGGTTTCG+GGG + chr7_3:58166095-58166114 Msa1112190:CDS 45.0%
GAAAATGCTACTAGAAGCCC+TGG - chr7_3:58166132-58166151 None:intergenic 45.0%
! GGTATGATTGGTTAGCGAAG+AGG + chr7_3:58166333-58166352 Msa1112190:intron 45.0%
!! ACAAGAAGTATCCTGCTCGA+AGG - chr7_3:58166361-58166380 None:intergenic 45.0%
TTCGAGCAGGATACTTCTTG+TGG + chr7_3:58166360-58166379 Msa1112190:CDS 45.0%
ACGATGAGTGCCTATGGTTT+AGG + chr7_3:58166383-58166402 Msa1112190:CDS 45.0%
GGGACTATATACAGCAAAGC+TGG - chr7_3:58166560-58166579 None:intergenic 45.0%
!! ATGTGAGGGCAAGGCATTTT+TGG - chr7_3:58167069-58167088 None:intergenic 45.0%
CCCTCTTGACTGTTAGATGT+TGG + chr7_3:58167287-58167306 Msa1112190:three_prime_UTR 45.0%
!!! AATTTATTTTTATATTTTTG+TGG + chr7_3:58161929-58161948 Msa1112190:intron 5.0%
!!! TTTATTAATATTTTGTAATA+TGG + chr7_3:58163602-58163621 Msa1112190:intron 5.0%
TAAGCGTTAAAGGGCCCGTT+TGG + chr7_3:58162685-58162704 Msa1112190:intron 50.0%
!! GTCGGTGTTGGTGCAAGATT+TGG + chr7_3:58163383-58163402 Msa1112190:CDS 50.0%
CGGCAATGGCAACTCTAGTA+TGG - chr7_3:58163442-58163461 None:intergenic 50.0%
!! GGTTTGCTACAACAGTCAGG+AGG - chr7_3:58163467-58163486 None:intergenic 50.0%
!! GAGATCATTTTGGTGCACCG+AGG + chr7_3:58163655-58163674 Msa1112190:CDS 50.0%
ACTTCTGCAACATCGACCTG+TGG - chr7_3:58164281-58164300 None:intergenic 50.0%
TCTTCTGTGAGAGGACTGTG+AGG - chr7_3:58164474-58164493 None:intergenic 50.0%
!! AACGAATGAAAGTGCTGCCG+TGG - chr7_3:58164683-58164702 None:intergenic 50.0%
AATGTGTCCGTCTGAACGCT+AGG - chr7_3:58164914-58164933 None:intergenic 50.0%
! GGGACTGCAAACTTGCTTAG+TGG + chr7_3:58165162-58165181 Msa1112190:intron 50.0%
AGCGAATGCTATGCAGAAGG+GGG - chr7_3:58165424-58165443 None:intergenic 50.0%
CAGCGAATGCTATGCAGAAG+GGG - chr7_3:58165425-58165444 None:intergenic 50.0%
CACAGCGAATGCTATGCAGA+AGG - chr7_3:58165427-58165446 None:intergenic 50.0%
CTTCTGCATAGCATTCGCTG+TGG + chr7_3:58165425-58165444 Msa1112190:CDS 50.0%
GCATAGCATTCGCTGTGGTT+TGG + chr7_3:58165430-58165449 Msa1112190:CDS 50.0%
CGTGTATCGTATGCCTGGAT+TGG + chr7_3:58165465-58165484 Msa1112190:CDS 50.0%
CCCCAAGGATCGAATAAACG+CGG - chr7_3:58166072-58166091 None:intergenic 50.0%
CCGCGTTTATTCGATCCTTG+GGG + chr7_3:58166069-58166088 Msa1112190:CDS 50.0%
CGTTTATTCGATCCTTGGGG+TGG + chr7_3:58166072-58166091 Msa1112190:CDS 50.0%
ATGACACTGTAACCACCCCA+AGG - chr7_3:58166087-58166106 None:intergenic 50.0%
TGGGGTGGTTACAGTGTCAT+CGG + chr7_3:58166087-58166106 Msa1112190:CDS 50.0%
TTGTGGACGATGAGTGCCTA+TGG + chr7_3:58166377-58166396 Msa1112190:CDS 50.0%
CGGCTATCACAGTGGTTTAG+TGG - chr7_3:58166806-58166825 None:intergenic 50.0%
TCAAACAGCGGCTATCACAG+TGG - chr7_3:58166814-58166833 None:intergenic 50.0%
TCCTCTTTGATGTGAGGGCA+AGG - chr7_3:58167078-58167097 None:intergenic 50.0%
AGTAGACGAGTAATCTCCCG+CGG + chr7_3:58167107-58167126 Msa1112190:exon 50.0%
CTCCCGCGGAATAGTATTGT+AGG + chr7_3:58167121-58167140 Msa1112190:three_prime_UTR 50.0%
GTGGAAAGCGGCGAGTATGT+CGG + chr7_3:58163365-58163384 Msa1112190:CDS 55.0%
GCTACAACAGTCAGGAGGGT+CGG - chr7_3:58163462-58163481 None:intergenic 55.0%
! GCTCACGGGCGAGATCATTT+TGG + chr7_3:58163645-58163664 Msa1112190:intron 55.0%
ACCTGCTGTCATGCTTCCAC+TGG + chr7_3:58164030-58164049 Msa1112190:CDS 55.0%
! TCCAGTGGAAGCATGACAGC+AGG - chr7_3:58164034-58164053 None:intergenic 55.0%
GTCATGCTTCCACTGGATGC+CGG + chr7_3:58164037-58164056 Msa1112190:CDS 55.0%
ATACTCTCCACGACGTCCAC+AGG + chr7_3:58164262-58164281 Msa1112190:CDS 55.0%
! GTGCTTCTTACTGGTCTGCC+TGG + chr7_3:58164336-58164355 Msa1112190:CDS 55.0%
AACGCCGTGTATCGTATGCC+TGG + chr7_3:58165460-58165479 Msa1112190:CDS 55.0%
GTAGCTCGCGGTGATAAGAG+TGG + chr7_3:58166015-58166034 Msa1112190:CDS 55.0%
GCGGTATCTTGAGCAGCATG+GGG - chr7_3:58166053-58166072 None:intergenic 55.0%
CGCGGTATCTTGAGCAGCAT+GGG - chr7_3:58166054-58166073 None:intergenic 55.0%
ACGCGGTATCTTGAGCAGCA+TGG - chr7_3:58166055-58166074 None:intergenic 55.0%
GCCTTGCCCTCACATCAAAG+AGG + chr7_3:58167074-58167093 Msa1112190:CDS 55.0%
GCGGGAGATTACTCGTCTAC+TGG - chr7_3:58167108-58167127 None:intergenic 55.0%
AGCGGCGAGTATGTCGGTGT+TGG + chr7_3:58163371-58163390 Msa1112190:CDS 60.0%
ACAGTCAGGAGGGTCGGCAA+TGG - chr7_3:58163456-58163475 None:intergenic 60.0%
AAGGCTTCACCGGCATCCAG+TGG - chr7_3:58164049-58164068 None:intergenic 60.0%
ACATCGACCTGTGGACGTCG+TGG - chr7_3:58164272-58164291 None:intergenic 60.0%
TCTGCCTGGACTGCCAGAGA+GGG + chr7_3:58164350-58164369 Msa1112190:CDS 60.0%
AACACCCTCTCTGGCAGTCC+AGG - chr7_3:58164357-58164376 None:intergenic 60.0%
GCGAAGAGGAACCTTCGAGC+AGG + chr7_3:58166347-58166366 Msa1112190:CDS 60.0%
GTCTGCCTGGACTGCCAGAG+AGG + chr7_3:58164349-58164368 Msa1112190:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 58161437 58167408 58161437 ID=Msa1112190;Name=Msa1112190
chr7_3 mRNA 58161437 58167408 58161437 ID=Msa1112190-mRNA-1;Parent=Msa1112190;Name=Msa1112190-mRNA-1;_AED=0.14;_eAED=0.14;_QI=199|1|1|1|1|1|14|289|537
chr7_3 exon 58161437 58161767 58161437 ID=Msa1112190-mRNA-1:exon:12644;Parent=Msa1112190-mRNA-1
chr7_3 exon 58163338 58163496 58163338 ID=Msa1112190-mRNA-1:exon:12645;Parent=Msa1112190-mRNA-1
chr7_3 exon 58163646 58163757 58163646 ID=Msa1112190-mRNA-1:exon:12646;Parent=Msa1112190-mRNA-1
chr7_3 exon 58163981 58164097 58163981 ID=Msa1112190-mRNA-1:exon:12647;Parent=Msa1112190-mRNA-1
chr7_3 exon 58164249 58164400 58164249 ID=Msa1112190-mRNA-1:exon:12648;Parent=Msa1112190-mRNA-1
chr7_3 exon 58164616 58164798 58164616 ID=Msa1112190-mRNA-1:exon:12649;Parent=Msa1112190-mRNA-1
chr7_3 exon 58165163 58165197 58165163 ID=Msa1112190-mRNA-1:exon:12650;Parent=Msa1112190-mRNA-1
chr7_3 exon 58165338 58165500 58165338 ID=Msa1112190-mRNA-1:exon:12651;Parent=Msa1112190-mRNA-1
chr7_3 exon 58165648 58165701 58165648 ID=Msa1112190-mRNA-1:exon:12652;Parent=Msa1112190-mRNA-1
chr7_3 exon 58165818 58165910 58165818 ID=Msa1112190-mRNA-1:exon:12653;Parent=Msa1112190-mRNA-1
chr7_3 exon 58166015 58166157 58166015 ID=Msa1112190-mRNA-1:exon:12654;Parent=Msa1112190-mRNA-1
chr7_3 exon 58166334 58166404 58166334 ID=Msa1112190-mRNA-1:exon:12655;Parent=Msa1112190-mRNA-1
chr7_3 exon 58166507 58166590 58166507 ID=Msa1112190-mRNA-1:exon:12656;Parent=Msa1112190-mRNA-1
chr7_3 exon 58167004 58167408 58167004 ID=Msa1112190-mRNA-1:exon:12657;Parent=Msa1112190-mRNA-1
chr7_3 five_prime_UTR 58161437 58161635 58161437 ID=Msa1112190-mRNA-1:five_prime_utr;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58161636 58161767 58161636 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58163338 58163496 58163338 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58163646 58163757 58163646 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58163981 58164097 58163981 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58164249 58164400 58164249 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58164616 58164798 58164616 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58165163 58165197 58165163 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58165338 58165500 58165338 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58165648 58165701 58165648 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58165818 58165910 58165818 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58166015 58166157 58166015 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58166334 58166404 58166334 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58166507 58166590 58166507 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 CDS 58167004 58167119 58167004 ID=Msa1112190-mRNA-1:cds;Parent=Msa1112190-mRNA-1
chr7_3 three_prime_UTR 58167120 58167408 58167120 ID=Msa1112190-mRNA-1:three_prime_utr;Parent=Msa1112190-mRNA-1
Gene Sequence

>Msa1112190

ATGCCTTCTTTTACACCTATCTTCTTCTTCTCTGTGTTCATGGTTCTTCTTACTTTCTCTTTTGCTGGTGATATAGTTCATCATGATAGTATTGCTCCTAAGAAACCTGGATGTGACAACAACTTTGTTCTGGTTAAAGTTCCAATTTCAATTGATGGTGTGGAAAGCGGCGAGTATGTCGGTGTTGGTGCAAGATTTGGACCTACATTGGAATCAAAAGAAAAACGTGCTAACCATACTAGAGTTGCCATTGCCGACCCTCCTGACTGTTGTAGCAAACCTAAGAATAAGCTCACGGGCGAGATCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTGATTATAAATAACGCTAAAGGACTTTTCAAGATGGTTTGTGAAAATGAAACCGATATTGATATTGGAATACCTGCTGTCATGCTTCCACTGGATGCCGGTGAAGCCTTGAAAAAATATATACAAAACAAGTCCACAGTGTCTGTGCAGTTATACTCTCCACGACGTCCACAGGTCGATGTTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCCAGAGAGGGTGTTATTGAGCAAGAGAAGCTATTAAAGGATGATTCAGATGAGCTTCTAAATATAGAGAATGCTGGTTCCAGTGCTTTTTTGGAAATAAGCACCACGGCAGCACTTTCATTCGTTGTGATTGCTTCTTGTTTCTTGTTTATGCTTTACAAACTAATGGGAAGATGGTTCATTGATGTTCTGGTGGTTCTGTTTTGTATTGGTGGTGTTGAGGGACTGCAAACTTGCTTAGTGGCTCTTTTATCACATTTCAGATGGTCTCAACATGCTGCACAAACATATGTGAAAGTACCCTTCTTCGGTGCTGTTTCACATCTCACTCTTGCTGTCACCCCCTTCTGCATAGCATTCGCTGTGGTTTGGGGAGTTGAACGCCGTGTATCGTATGCCTGGATTGGTCAAGATATTCTTGGTATCGCTTTGATAATTACGGTTCTTCAGATTGTCCAAATACCAAACCTCAAGGTTGGAACTGTTCTTCTCAGCTGCGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACTGATTTTCCATGAGAGTGTGATGATAGTGGTAGCTCGCGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTGCTCAAGATACCGCGTTTATTCGATCCTTGGGGTGGTTACAGTGTCATCGGTTTCGGGGACATAATTTTACCAGGGCTTCTAGTAGCATTTTCGTTAAGGTATGATTGGTTAGCGAAGAGGAACCTTCGAGCAGGATACTTCTTGTGGACGATGAGTGCCTATGGTTTAGGTCTCCTTGTCACATACATAGCTTTGAATTTGATGGATGGGCATGGTCAACCAGCTTTGCTGTATATAGTCCCATTTACACTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGCGAACTTGAGATTTTATGGACAAGGGGGATGCCAAAAATGCCTTGCCCTCACATCAAAGAGGATCATCAACCAGTAGACGAGTAA

Protein sequence

>Msa1112190

MPSFTPIFFFSVFMVLLTFSFAGDIVHHDSIAPKKPGCDNNFVLVKVPISIDGVESGEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINNAKGLFKMVCENETDIDIGIPAVMLPLDAGEALKKYIQNKSTVSVQLYSPRRPQVDVAEVFLWLMAVGTILCASYWSAWTAREGVIEQEKLLKDDSDELLNIENAGSSAFLEISTTAALSFVVIASCFLFMLYKLMGRWFIDVLVVLFCIGGVEGLQTCLVALLSHFRWSQHAAQTYVKVPFFGAVSHLTLAVTPFCIAFAVVWGVERRVSYAWIGQDILGIALIITVLQIVQIPNLKVGTVLLSCAFLYDIFWVFVSKLIFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLLVAFSLRYDWLAKRNLRAGYFLWTMSAYGLGLLVTYIALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELEILWTRGMPKMPCPHIKEDHQPVDE*