AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0155500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155500 MtrunA17_Chr1g0166271 96.970 561 14 2 1 559 1 560 0.0 1117
Msa0155500 MtrunA17_Chr3g0143811 38.953 344 178 9 214 551 88 405 8.79e-60 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155500 AT3G55760.2 60.038 533 196 6 32 555 52 576 0.0 625
Msa0155500 AT3G55760.3 60.038 533 196 6 32 555 52 576 0.0 625
Msa0155500 AT3G55760.1 60.038 533 196 6 32 555 52 576 0.0 625
Msa0155500 AT1G42430.1 37.673 361 204 9 203 556 54 400 2.81e-58 200
Msa0155500 AT1G42430.2 44.815 270 132 7 290 556 128 383 5.34e-58 199

Find 176 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATATGGTTTCGGCAAATT+AGG 0.113199 1_4:-20916571 None:intergenic
TGGTTGTGGTGAAGGGTTTC+AGG 0.119322 1_4:-20912581 None:intergenic
ACCATTCTGTTGTCTTAATT+TGG 0.162728 1_4:-20916801 None:intergenic
GAAATGTTTGGCGTGAATTT+TGG 0.187840 1_4:+20914780 Msa0155500:CDS
TATGAAAGATTCCCTCATTT+TGG 0.191007 1_4:+20916480 Msa0155500:CDS
TAGAGTGGCAAGAGAAGTTT+TGG 0.220340 1_4:+20914693 Msa0155500:CDS
TGAACCCATCTTGTTGGTTT+TGG 0.236559 1_4:-20912654 None:intergenic
CAAGAGTCCGGAACACAAAA+TGG 0.241861 1_4:+20914161 Msa0155500:CDS
TTCTGATGAGTTTGGCTATA+AGG 0.253590 1_4:+20914721 Msa0155500:CDS
GACCTTTCCTTCTCGATAAC+AGG 0.289771 1_4:-20914341 None:intergenic
TGTGTTTCTTTCTCGTTCTA+TGG 0.293500 1_4:-20912724 None:intergenic
TTGGAGATGGTTGGTGGTGG+TGG 0.296501 1_4:-20912635 None:intergenic
GTGATGAGTGGCAGGAAAAT+TGG 0.309768 1_4:+20915302 Msa0155500:CDS
CCAGCATCGAGGGGTGTGTT+TGG 0.316320 1_4:-20915388 None:intergenic
ACCACTCCAGTCATCGTTAG+AGG 0.318460 1_4:+20914430 Msa0155500:CDS
TATATGGTTTCGGCAAATTA+GGG 0.337964 1_4:-20916570 None:intergenic
ATGGTTGGTGGTGGTGGTGA+TGG 0.347015 1_4:-20912629 None:intergenic
TGGGAGGCTTCTGATGAGTT+TGG 0.351158 1_4:+20914713 Msa0155500:CDS
CAGATGGTGGATGGGAGAAA+TGG 0.354452 1_4:+20916262 Msa0155500:CDS
GTTCCTTCAAATGATGCTAA+TGG 0.364673 1_4:+20914272 Msa0155500:CDS
CGAATTTGAACCCATCTTGT+TGG 0.373651 1_4:-20912660 None:intergenic
CTTTCACTGCTTTGAAAACT+CGG 0.376409 1_4:+20916506 Msa0155500:CDS
TTAATATGAATCTTTAAGAT+TGG 0.376553 1_4:+20916831 Msa0155500:three_prime_UTR
CGTCTGGTCAAGCTGAGAAA+TGG 0.376698 1_4:+20915341 Msa0155500:CDS
AGATGGTGGATGGGAGAAAT+GGG 0.378142 1_4:+20916263 Msa0155500:CDS
GATCTGATAGAATCAGATTC+AGG 0.379323 1_4:+20914113 Msa0155500:intron
GGGAGAAATGGGGCGACAAA+TGG 0.387783 1_4:+20916274 Msa0155500:CDS
CCAAACACACCCCTCGATGC+TGG 0.389295 1_4:+20915388 Msa0155500:CDS
GGAGATACGTTACAGAAATA+TGG 0.390746 1_4:+20912957 Msa0155500:CDS
CAGCATCGAGGGGTGTGTTT+GGG 0.394807 1_4:-20915387 None:intergenic
GGAAAACGGGCTACTGCATA+TGG 0.406999 1_4:+20915243 Msa0155500:intron
GGTGGTGGTGGTGATGGAGA+TGG 0.409063 1_4:-20912623 None:intergenic
TTGAAAACTCGGTTCAACTA+AGG 0.411190 1_4:+20916517 Msa0155500:CDS
GCATAAAATACACTGACAAA+TGG 0.414004 1_4:+20916226 Msa0155500:CDS
TCTTTCTGTGTTCCTGACTT+TGG 0.415793 1_4:-20914197 None:intergenic
ATTATCAATGGCAGGAAAAC+GGG 0.416043 1_4:+20915230 Msa0155500:intron
TGGAGAAAACTGCAGACAAA+TGG 0.423581 1_4:+20915263 Msa0155500:CDS
GGTGAGCAACACAATGGTTC+TGG 0.424760 1_4:+20916387 Msa0155500:CDS
ATGCTGGGCATGCTCATGTC+TGG 0.426296 1_4:+20915404 Msa0155500:CDS
GGAGAAAACTGCAGACAAAT+GGG 0.427855 1_4:+20915264 Msa0155500:CDS
TGGCTTTCTTCCACATTTCG+AGG 0.428161 1_4:-20912704 None:intergenic
GCCGAAACCATATAAAATAT+AGG 0.432274 1_4:+20916579 Msa0155500:three_prime_UTR
TTCCTTCTCGATAACAGGAT+TGG 0.433266 1_4:-20914336 None:intergenic
GTATGGTGTGGTTGTGGTGA+AGG 0.434693 1_4:-20912589 None:intergenic
ATGATTTACTGTCCACTTCG+AGG 0.442914 1_4:-20914550 None:intergenic
GCAGACAAATGGGGAAGAAA+TGG 0.443554 1_4:+20915274 Msa0155500:CDS
GAACTTGGTTCTGAGAAATC+TGG 0.444964 1_4:+20914743 Msa0155500:CDS
TTCCTTCAAATGATGCTAAT+GGG 0.445059 1_4:+20914273 Msa0155500:CDS
TTGGAGAGAATCCATGCGTC+AGG 0.446144 1_4:+20914799 Msa0155500:CDS
GAGCAGTAGTGGTGAACATT+GGG 0.446442 1_4:+20916431 Msa0155500:CDS
GGAGAAATGGGGCGACAAAT+GGG 0.449865 1_4:+20916275 Msa0155500:CDS
TGCTGCTAGAGCGCTTCTTA+AGG 0.450496 1_4:+20912905 Msa0155500:CDS
AGCAACAGTGTTCGTTCTGA+TGG 0.450698 1_4:+20912936 Msa0155500:CDS
GACAGTAAATCATCACCTAT+TGG 0.451090 1_4:+20914560 Msa0155500:CDS
CTCTTCCACGCCGTCGTCGT+TGG 0.451185 1_4:-20912772 None:intergenic
GGTGGTGGTGATGGAGATGG+TGG 0.453998 1_4:-20912620 None:intergenic
CTCCACCATCTCGTTCCATC+AGG 0.454183 1_4:-20914590 None:intergenic
TGATCTGTATGGTGTGGTTG+TGG 0.456751 1_4:-20912595 None:intergenic
AACCCATTAGCATCATTTGA+AGG 0.459116 1_4:-20914275 None:intergenic
GTCTGGTCAAGCTGAGAAAT+GGG 0.459856 1_4:+20915342 Msa0155500:CDS
TCCACCATCTGTTGAACGCT+CGG 0.460074 1_4:-20916250 None:intergenic
CACACGAAATGCAAGATACT+TGG 0.460475 1_4:+20916457 Msa0155500:CDS
CAAGCTCTTCTGAAAGTGTA+AGG 0.460941 1_4:+20916647 Msa0155500:three_prime_UTR
CATAAAATACACTGACAAAT+GGG 0.461214 1_4:+20916227 Msa0155500:CDS
ATAACAGGATTGGATAATGT+TGG 0.462117 1_4:-20914326 None:intergenic
CTGAGAAATGGGCACACAAA+TGG 0.464068 1_4:+20915353 Msa0155500:CDS
GATTATCAATGGCAGGAAAA+CGG 0.464122 1_4:+20915229 Msa0155500:intron
CTTACAATTTATGCAGAAAG+TGG 0.464214 1_4:+20916706 Msa0155500:three_prime_UTR
GAGAGCGCTGGAACCGGACT+TGG 0.466122 1_4:+20916364 Msa0155500:CDS
TATGGTGTGGTTGTGGTGAA+GGG 0.467969 1_4:-20912588 None:intergenic
CCATCAGGATTCACACCAAT+AGG 0.468455 1_4:-20914575 None:intergenic
CACGCCGTCGTCGTTGGAAG+CGG 0.469680 1_4:-20912766 None:intergenic
AGCACGGAGAGCGCTGGAAC+CGG 0.469923 1_4:+20916358 Msa0155500:CDS
TGAGTAAGTAAACTCTCAAA+TGG 0.477010 1_4:-20914383 None:intergenic
TGTGTTGCTCACCCCAAGTC+CGG 0.478776 1_4:-20916377 None:intergenic
TGGTAAAGGTGATGAGTGGC+AGG 0.479211 1_4:+20915294 Msa0155500:CDS
CACCTACAAATGACACCATC+AGG 0.483819 1_4:-20914635 None:intergenic
CAAACACACCCCTCGATGCT+GGG 0.486060 1_4:+20915389 Msa0155500:CDS
AGCGGTAAGTTTGTTGAAGT+GGG 0.486073 1_4:-20912748 None:intergenic
TCAGGTGGGTCGCCATTGCA+TGG 0.493623 1_4:-20912563 None:intergenic
TGATAGAATTCAGAGATTGC+AGG 0.499013 1_4:+20912854 Msa0155500:CDS
ACGAGATGGTGGAGAGAGAC+GGG 0.501456 1_4:+20914599 Msa0155500:CDS
ATGAGCATGCCCAGCATCGA+GGG 0.501980 1_4:-20915398 None:intergenic
AAATGCTCATGGCATCAAGC+AGG 0.505562 1_4:+20916314 Msa0155500:CDS
AAATCTGGACGTGATGCAAA+TGG 0.507451 1_4:+20914758 Msa0155500:CDS
AGAGCGCTGGAACCGGACTT+GGG 0.507830 1_4:+20916365 Msa0155500:CDS
TTTGAACACTACAATGCGTC+TGG 0.509320 1_4:+20915325 Msa0155500:CDS
GAGTTTGGCTATAAGGAACT+TGG 0.516769 1_4:+20914728 Msa0155500:CDS
AAGCGGTAAGTTTGTTGAAG+TGG 0.521152 1_4:-20912749 None:intergenic
TGAAAACTCGGTTCAACTAA+GGG 0.522500 1_4:+20916518 Msa0155500:CDS
TTTGAACCTCTAACGATGAC+TGG 0.524222 1_4:-20914436 None:intergenic
ACACAGAAAGATGGTATCCC+AGG 0.524867 1_4:+20914209 Msa0155500:CDS
AAGGTAAGCACGGAGAGCGC+TGG 0.526501 1_4:+20916352 Msa0155500:CDS
AAGAGTCCGGAACACAAAAT+GGG 0.528614 1_4:+20914162 Msa0155500:CDS
AGCGTTCAACAGATGGTGGA+TGG 0.528680 1_4:+20916253 Msa0155500:CDS
TGTTGGATTAACTGAAGACT+TGG 0.531834 1_4:-20914309 None:intergenic
AGAGTCTCCTTCTGTGGAAG+AGG 0.534266 1_4:+20914475 Msa0155500:CDS
CTGAAAGTGTAAGGAATGAA+TGG 0.535552 1_4:+20916656 Msa0155500:three_prime_UTR
TCTGGATGGGTTCACAAGTA+CGG 0.540590 1_4:+20916405 Msa0155500:CDS
AGAGCAGTAGTGGTGAACAT+TGG 0.544824 1_4:+20916430 Msa0155500:CDS
TGTGGTGAAGGGTTTCAGGT+GGG 0.545930 1_4:-20912577 None:intergenic
CATCTCCAAAACCAACAAGA+TGG 0.548482 1_4:+20912649 Msa0155500:CDS
GACCTGATGGTGTCATTTGT+AGG 0.552905 1_4:+20914633 Msa0155500:CDS
TAGGGTTCTTGCCTTTCAGA+AGG 0.553381 1_4:-20916552 None:intergenic
CAGTGAAAGAAACCAAAATG+AGG 0.556652 1_4:-20916492 None:intergenic
AGCAACACAATGGTTCTGGA+TGG 0.562143 1_4:+20916391 Msa0155500:CDS
TGATTTACTGTCCACTTCGA+GGG 0.562246 1_4:-20914549 None:intergenic
CTCGAACTACTTCTGCTGCA+TGG 0.563479 1_4:-20914526 None:intergenic
GCTTGTGACTGTAGGGAGAA+TGG 0.564823 1_4:-20912539 None:intergenic
GTGGAAAATTTGTGTTGTGA+AGG 0.565159 1_4:-20912510 None:intergenic
GTGATGCAAATGGAAATGTT+TGG 0.566936 1_4:+20914768 Msa0155500:CDS
AACGAGATGGTGGAGAGAGA+CGG 0.567285 1_4:+20914598 Msa0155500:CDS
CATCATCATACCTCGAAATG+TGG 0.567588 1_4:+20912694 Msa0155500:CDS
TTGTGGTGAAGGGTTTCAGG+TGG 0.567899 1_4:-20912578 None:intergenic
GCATGGAGCTTGTGACTGTA+GGG 0.569300 1_4:-20912546 None:intergenic
AATTTCGATCTAAATGCTCA+TGG 0.570710 1_4:+20916303 Msa0155500:CDS
TGGGCCGAGCGTTCAACAGA+TGG 0.571017 1_4:+20916246 Msa0155500:CDS
AATAATGCTAACCTGACGCA+TGG 0.573117 1_4:-20914810 None:intergenic
ATGCTCATGTCTGGCACGAA+AGG 0.573497 1_4:+20915413 Msa0155500:CDS
ATCTCCAAAACCAACAAGAT+GGG 0.573548 1_4:+20912650 Msa0155500:CDS
ATCCAATCCTGTTATCGAGA+AGG 0.574315 1_4:+20914334 Msa0155500:CDS
ATATGATCAATCATATACTC+AGG 0.583609 1_4:-20916624 None:intergenic
AAATGGGGAAGAAATGGTAA+AGG 0.588296 1_4:+20915280 Msa0155500:CDS
AGAGTTTCAGAAGATTCTAG+AGG 0.589382 1_4:+20912815 Msa0155500:CDS
CGCTTCCAACGACGACGGCG+TGG 0.590103 1_4:+20912767 Msa0155500:CDS
AAGTACGGAAAGAGCAGTAG+TGG 0.590362 1_4:+20916420 Msa0155500:CDS
GATTCTAGAGGTTTCAAGTG+AGG 0.591311 1_4:+20912827 Msa0155500:CDS
AAGTCAGGAACACAGAAAGA+TGG 0.592163 1_4:+20914200 Msa0155500:CDS
CCTATTGGTGTGAATCCTGA+TGG 0.594533 1_4:+20914575 Msa0155500:CDS
GAAGGAACATCACTATCCAC+CGG 0.596708 1_4:-20914257 None:intergenic
AGTGAAAGAAACCAAAATGA+GGG 0.598165 1_4:-20916491 None:intergenic
CAGGGAGAGACATGGTGGGA+AGG 0.601474 1_4:+20916333 Msa0155500:CDS
GCGTTCAACAGATGGTGGAT+GGG 0.603310 1_4:+20916254 Msa0155500:CDS
GAATGTAGAGTCTCCTTCTG+TGG 0.604329 1_4:+20914469 Msa0155500:CDS
CAGTCACAAGCTCCATGCAA+TGG 0.605462 1_4:+20912551 Msa0155500:exon
GGAATTGAGCAAAGACCTGA+TGG 0.605980 1_4:+20914620 Msa0155500:CDS
TGCATGGAGCTTGTGACTGT+AGG 0.609660 1_4:-20912547 None:intergenic
AAGGAACATCACTATCCACC+GGG 0.609949 1_4:-20914256 None:intergenic
GTAGGGAGAATGGTGAATGG+TGG 0.610512 1_4:-20912529 None:intergenic
AGACTCTACATTCGAAGAAG+CGG 0.610888 1_4:-20914459 None:intergenic
GAGCGCTGGAACCGGACTTG+GGG 0.611983 1_4:+20916366 Msa0155500:CDS
GCAACACAATGGTTCTGGAT+GGG 0.612606 1_4:+20916392 Msa0155500:CDS
GAAACATATGACGGGTATGG+TGG 0.617066 1_4:+20916201 Msa0155500:CDS
GACTGGAGTGGTGGAAGTGT+AGG 0.618503 1_4:-20914419 None:intergenic
GTGCTGACAAAGCTTTAGAG+TGG 0.618802 1_4:+20914678 Msa0155500:CDS
GCCAAATTAAGACAACAGAA+TGG 0.620849 1_4:+20916800 Msa0155500:three_prime_UTR
GGTGGGGTGAAACATATGAC+GGG 0.620853 1_4:+20916193 Msa0155500:intron
ATCCTGTTATCGAGAAGGAA+AGG 0.623492 1_4:+20914339 Msa0155500:CDS
AGATGGTGGAATGATCTGTA+TGG 0.628220 1_4:-20912606 None:intergenic
AATGCTCATGGCATCAAGCA+GGG 0.630523 1_4:+20916315 Msa0155500:CDS
AGGTGGGGTGAAACATATGA+CGG 0.630842 1_4:+20916192 Msa0155500:intron
GCCGAGCGTTCAACAGATGG+TGG 0.631424 1_4:+20916249 Msa0155500:CDS
TCAAGCAGGGAGAGACATGG+TGG 0.631506 1_4:+20916328 Msa0155500:CDS
TCTAACGATGACTGGAGTGG+TGG 0.633376 1_4:-20914428 None:intergenic
AGTAGTTCGAGCCCTCGAAG+TGG 0.634124 1_4:+20914538 Msa0155500:CDS
ACATGGTGGGAAGGTAAGCA+CGG 0.635347 1_4:+20916342 Msa0155500:CDS
GGTGAAACATATGACGGGTA+TGG 0.637599 1_4:+20916198 Msa0155500:CDS
ACTGTAGGGAGAATGGTGAA+TGG 0.640037 1_4:-20912532 None:intergenic
TGAGCATGCCCAGCATCGAG+GGG 0.641935 1_4:-20915397 None:intergenic
ATCCTGATGGAACGAGATGG+TGG 0.651460 1_4:+20914588 Msa0155500:CDS
GCATCAAGCAGGGAGAGACA+TGG 0.651698 1_4:+20916325 Msa0155500:CDS
GATGGTGGATGGGAGAAATG+GGG 0.658644 1_4:+20916264 Msa0155500:CDS
CATGAGCATGCCCAGCATCG+AGG 0.662387 1_4:-20915399 None:intergenic
GTGGAATGATCTGTATGGTG+TGG 0.664429 1_4:-20912601 None:intergenic
TGTAGGTGGACAGTGATCAG+AGG 0.666697 1_4:+20914650 Msa0155500:CDS
GAGAAAACTGCAGACAAATG+GGG 0.668805 1_4:+20915265 Msa0155500:CDS
TTCGAGGTATGATGATGATG+AGG 0.671339 1_4:-20912688 None:intergenic
GAAATGGTAAAGGTGATGAG+TGG 0.671438 1_4:+20915290 Msa0155500:CDS
CAAGCAGGGAGAGACATGGT+GGG 0.687145 1_4:+20916329 Msa0155500:CDS
ACTTGGGGTGAGCAACACAA+TGG 0.688078 1_4:+20916381 Msa0155500:CDS
CTGATGGTGTCATTTGTAGG+TGG 0.699847 1_4:+20914636 Msa0155500:CDS
TGAATCCTGATGGAACGAGA+TGG 0.700722 1_4:+20914585 Msa0155500:CDS
ACCTCTAACGATGACTGGAG+TGG 0.704009 1_4:-20914431 None:intergenic
CTTACCGCTTCCAACGACGA+CGG 0.711947 1_4:+20912762 Msa0155500:CDS
GGAACATCACTATCCACCGG+GGG 0.724901 1_4:-20914254 None:intergenic
AGGAACATCACTATCCACCG+GGG 0.790181 1_4:-20914255 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATTTCATGAAAATT+AGG + chr1_4:20913223-20913242 Msa0155500:intron 10.0%
!!! ATTAAACTCTAATGAAATTT+TGG - chr1_4:20913341-20913360 None:intergenic 15.0%
!!! CTTTTTTTTTCAATATTTTG+CGG - chr1_4:20913778-20913797 None:intergenic 15.0%
!! ATATTGAAAAAAAAAGATCA+AGG + chr1_4:20913782-20913801 Msa0155500:intron 15.0%
!! TATTGAAAAAAAAAGATCAA+GGG + chr1_4:20913783-20913802 Msa0155500:intron 15.0%
!!! TTCAGATGATTATAAATTTT+TGG - chr1_4:20915035-20915054 None:intergenic 15.0%
!!! AATTTATAATCATCTGAAAT+CGG + chr1_4:20915037-20915056 Msa0155500:intron 15.0%
!!! TGAATTTTTTTAAAACAAAC+AGG + chr1_4:20915602-20915621 Msa0155500:intron 15.0%
!!! GACTGAATATATATATTTTT+GGG - chr1_4:20915738-20915757 None:intergenic 15.0%
!!! TGACTGAATATATATATTTT+TGG - chr1_4:20915739-20915758 None:intergenic 15.0%
!!! GTGTTTTTTGTTAATTTTTT+AGG + chr1_4:20915843-20915862 Msa0155500:intron 15.0%
!! ATATTATATCTTAAGCAATA+AGG + chr1_4:20916120-20916139 Msa0155500:intron 15.0%
!!! AAAAGTTCCTATATTTTATA+TGG - chr1_4:20916589-20916608 None:intergenic 15.0%
!!! TTAATATGAATCTTTAAGAT+TGG + chr1_4:20916831-20916850 Msa0155500:three_prime_UTR 15.0%
!! GAACAAAAATTCAAATTCAA+AGG - chr1_4:20913017-20913036 None:intergenic 20.0%
!!! TGAATTTTTGTTCTGTTTTT+TGG + chr1_4:20913024-20913043 Msa0155500:intron 20.0%
!! TTTGGTTAATTGAATAATGT+AGG + chr1_4:20913066-20913085 Msa0155500:intron 20.0%
!! TTGGTTAATTGAATAATGTA+GGG + chr1_4:20913067-20913086 Msa0155500:intron 20.0%
!! TAATTCCATATAAAATCAAC+TGG + chr1_4:20913155-20913174 Msa0155500:intron 20.0%
!!! ATAATCCAGTTGATTTTATA+TGG - chr1_4:20913163-20913182 None:intergenic 20.0%
!!! CAACTGGATTATTTTATTTT+TGG + chr1_4:20913171-20913190 Msa0155500:intron 20.0%
!! AATTTCATTAGAGTTTAATC+TGG + chr1_4:20913342-20913361 Msa0155500:intron 20.0%
!! ATTGAAAAAAAAAGATCAAG+GGG + chr1_4:20913784-20913803 Msa0155500:intron 20.0%
!!! ATTTTTTTCTTAAACTAACG+AGG + chr1_4:20914001-20914020 Msa0155500:intron 20.0%
!!! TTCTTTTTTTTTGCAAACAA+AGG - chr1_4:20915546-20915565 None:intergenic 20.0%
!! GGAATAAGTTAGATTAAAAA+GGG - chr1_4:20915999-20916018 None:intergenic 20.0%
!! TGGAATAAGTTAGATTAAAA+AGG - chr1_4:20916000-20916019 None:intergenic 20.0%
!!! TTTTAATCTAACTTATTCCA+AGG + chr1_4:20916000-20916019 Msa0155500:intron 20.0%
!!! TCCTATATTTTATATGGTTT+CGG - chr1_4:20916583-20916602 None:intergenic 20.0%
! AGAATTAGAGATAGATTCTA+TGG + chr1_4:20913108-20913127 Msa0155500:intron 25.0%
! TTCGATGTAATCATATGTAT+CGG - chr1_4:20913461-20913480 None:intergenic 25.0%
! TTGAAAAAAAAAGATCAAGG+GGG + chr1_4:20913785-20913804 Msa0155500:intron 25.0%
!! TTAGTGTAAAACTAGTTTAC+AGG + chr1_4:20913834-20913853 Msa0155500:intron 25.0%
! TCATAGTATTTAGTCCTTAA+AGG + chr1_4:20915483-20915502 Msa0155500:intron 25.0%
! TAGTGCAGAAGAAAATATAT+TGG - chr1_4:20915701-20915720 None:intergenic 25.0%
! ACAAAAAACACATAAAGCAA+TGG - chr1_4:20915834-20915853 None:intergenic 25.0%
! TCTTGTATGATATAAGTGAA+AGG + chr1_4:20915874-20915893 Msa0155500:intron 25.0%
! GCAATATTTATCAAAACCTT+GGG - chr1_4:20916054-20916073 None:intergenic 25.0%
! TGCAATATTTATCAAAACCT+TGG - chr1_4:20916055-20916074 None:intergenic 25.0%
! CATAAAATACACTGACAAAT+GGG + chr1_4:20916227-20916246 Msa0155500:CDS 25.0%
! ATATGATCAATCATATACTC+AGG - chr1_4:20916627-20916646 None:intergenic 25.0%
!!! TGTTCTGTTTTTTGGTTTCT+AGG + chr1_4:20913032-20913051 Msa0155500:intron 30.0%
!!! GTTCTGTTTTTTGGTTTCTA+GGG + chr1_4:20913033-20913052 Msa0155500:intron 30.0%
!!! TTTTTTGGTTTCTAGGGTTT+TGG + chr1_4:20913039-20913058 Msa0155500:intron 30.0%
!!! TTCTAGGGTTTTGGATTTTT+TGG + chr1_4:20913048-20913067 Msa0155500:intron 30.0%
ATTAAATTCACAAGCAACTC+AGG - chr1_4:20913139-20913158 None:intergenic 30.0%
!!! TTGTGTCTCTTTTTCAGATA+CGG + chr1_4:20913421-20913440 Msa0155500:intron 30.0%
AAACCTATGAAGCACATATA+CGG - chr1_4:20913553-20913572 None:intergenic 30.0%
AAACCAAAGACCTTAGTTAA+GGG - chr1_4:20913658-20913677 None:intergenic 30.0%
!! CACATTGTTTTTCATCTACA+AGG - chr1_4:20913684-20913703 None:intergenic 30.0%
CTTGTAGATGAAAAACAATG+TGG + chr1_4:20913682-20913701 Msa0155500:intron 30.0%
TAGATGAAAAACAATGTGGT+TGG + chr1_4:20913686-20913705 Msa0155500:intron 30.0%
AGATGAAAAACAATGTGGTT+GGG + chr1_4:20913687-20913706 Msa0155500:intron 30.0%
TGAAAAAAAAAGATCAAGGG+GGG + chr1_4:20913786-20913805 Msa0155500:intron 30.0%
ATAATGAAGATGCACCATAA+TGG - chr1_4:20913883-20913902 None:intergenic 30.0%
ACATGATTGAAGTCAAGAAA+AGG + chr1_4:20913926-20913945 Msa0155500:intron 30.0%
TCTGTGTAGTAAAAAATGCA+AGG + chr1_4:20913953-20913972 Msa0155500:intron 30.0%
TTGTACATGAAAGATGTTAG+TGG + chr1_4:20914059-20914078 Msa0155500:intron 30.0%
TTCCTTCAAATGATGCTAAT+GGG + chr1_4:20914273-20914292 Msa0155500:CDS 30.0%
ATAACAGGATTGGATAATGT+TGG - chr1_4:20914329-20914348 None:intergenic 30.0%
TGAGTAAGTAAACTCTCAAA+TGG - chr1_4:20914386-20914405 None:intergenic 30.0%
TAGAAGAGCTTAAGAAACAT+TGG - chr1_4:20915079-20915098 None:intergenic 30.0%
AACTTCCCTCATAAATTAGT+CGG + chr1_4:20915110-20915129 Msa0155500:intron 30.0%
! ACATACCGACTAATTTATGA+GGG - chr1_4:20915118-20915137 None:intergenic 30.0%
! TACATACCGACTAATTTATG+AGG - chr1_4:20915119-20915138 None:intergenic 30.0%
ATACTGAGCATGATTATCAA+TGG + chr1_4:20915218-20915237 Msa0155500:intron 30.0%
GGACTAAATACTATGAAAAC+AGG - chr1_4:20915479-20915498 None:intergenic 30.0%
GAAAGATCACTAAACCTTTA+AGG - chr1_4:20915500-20915519 None:intergenic 30.0%
ACATGAATTCATACGTTAGA+GGG - chr1_4:20915771-20915790 None:intergenic 30.0%
TACATGAATTCATACGTTAG+AGG - chr1_4:20915772-20915791 None:intergenic 30.0%
ATTTATCAAAACCTTGGGTA+AGG - chr1_4:20916049-20916068 None:intergenic 30.0%
AAATATTGCAAATAGCTTCC+TGG + chr1_4:20916065-20916084 Msa0155500:intron 30.0%
GCATAAAATACACTGACAAA+TGG + chr1_4:20916226-20916245 Msa0155500:CDS 30.0%
AATTTCGATCTAAATGCTCA+TGG + chr1_4:20916303-20916322 Msa0155500:CDS 30.0%
! TATGAAAGATTCCCTCATTT+TGG + chr1_4:20916480-20916499 Msa0155500:CDS 30.0%
AGTGAAAGAAACCAAAATGA+GGG - chr1_4:20916494-20916513 None:intergenic 30.0%
AAGTACAAAAACCTTCTGAA+AGG + chr1_4:20916541-20916560 Msa0155500:CDS 30.0%
TATATGGTTTCGGCAAATTA+GGG - chr1_4:20916573-20916592 None:intergenic 30.0%
TTATATGGTTTCGGCAAATT+AGG - chr1_4:20916574-20916593 None:intergenic 30.0%
GCCGAAACCATATAAAATAT+AGG + chr1_4:20916579-20916598 Msa0155500:three_prime_UTR 30.0%
CTTACAATTTATGCAGAAAG+TGG + chr1_4:20916706-20916725 Msa0155500:three_prime_UTR 30.0%
ACCATTCTGTTGTCTTAATT+TGG - chr1_4:20916804-20916823 None:intergenic 30.0%
GTGGAAAATTTGTGTTGTGA+AGG - chr1_4:20912513-20912532 None:intergenic 35.0%
ATCTCCAAAACCAACAAGAT+GGG + chr1_4:20912650-20912669 Msa0155500:CDS 35.0%
TGTGTTTCTTTCTCGTTCTA+TGG - chr1_4:20912727-20912746 None:intergenic 35.0%
AGAGTTTCAGAAGATTCTAG+AGG + chr1_4:20912815-20912834 Msa0155500:CDS 35.0%
TGATAGAATTCAGAGATTGC+AGG + chr1_4:20912854-20912873 Msa0155500:CDS 35.0%
GGAGATACGTTACAGAAATA+TGG + chr1_4:20912957-20912976 Msa0155500:CDS 35.0%
ATTGAATAATGTAGGGACTG+TGG + chr1_4:20913074-20913093 Msa0155500:intron 35.0%
TATGAAGCACATACACTTCT+CGG + chr1_4:20913393-20913412 Msa0155500:intron 35.0%
AAGACCTTAGTTAAGGGATT+CGG - chr1_4:20913652-20913671 None:intergenic 35.0%
AATCCCTTAACTAAGGTCTT+TGG + chr1_4:20913652-20913671 Msa0155500:intron 35.0%
CAAACCAAAGACCTTAGTTA+AGG - chr1_4:20913659-20913678 None:intergenic 35.0%
CCATAATGGCATGAGAAAAA+TGG - chr1_4:20913869-20913888 None:intergenic 35.0%
!! CCATTTTTCTCATGCCATTA+TGG + chr1_4:20913866-20913885 Msa0155500:intron 35.0%
GATCTGATAGAATCAGATTC+AGG + chr1_4:20914113-20914132 Msa0155500:intron 35.0%
!! AGTATTTTTGTGCAAGAGTC+CGG + chr1_4:20914149-20914168 Msa0155500:CDS 35.0%
GTTCCTTCAAATGATGCTAA+TGG + chr1_4:20914272-20914291 Msa0155500:CDS 35.0%
AACCCATTAGCATCATTTGA+AGG - chr1_4:20914278-20914297 None:intergenic 35.0%
TGTTGGATTAACTGAAGACT+TGG - chr1_4:20914312-20914331 None:intergenic 35.0%
GACAGTAAATCATCACCTAT+TGG + chr1_4:20914560-20914579 Msa0155500:CDS 35.0%
TTCTGATGAGTTTGGCTATA+AGG + chr1_4:20914721-20914740 Msa0155500:CDS 35.0%
GTGATGCAAATGGAAATGTT+TGG + chr1_4:20914768-20914787 Msa0155500:CDS 35.0%
! GAAATGTTTGGCGTGAATTT+TGG + chr1_4:20914780-20914799 Msa0155500:CDS 35.0%
TACTTAAGGTCGAATCAATC+AGG + chr1_4:20914922-20914941 Msa0155500:intron 35.0%
TAAGATTCATGAATGCACCA+AGG - chr1_4:20915163-20915182 None:intergenic 35.0%
GATTATCAATGGCAGGAAAA+CGG + chr1_4:20915229-20915248 Msa0155500:intron 35.0%
ATTATCAATGGCAGGAAAAC+GGG + chr1_4:20915230-20915249 Msa0155500:intron 35.0%
AAATGGGGAAGAAATGGTAA+AGG + chr1_4:20915280-20915299 Msa0155500:CDS 35.0%
GATTAAAAAGGGAAGCAAAG+TGG - chr1_4:20915988-20916007 None:intergenic 35.0%
CAGTGAAAGAAACCAAAATG+AGG - chr1_4:20916495-20916514 None:intergenic 35.0%
!! CTTTCACTGCTTTGAAAACT+CGG + chr1_4:20916506-20916525 Msa0155500:CDS 35.0%
TTGAAAACTCGGTTCAACTA+AGG + chr1_4:20916517-20916536 Msa0155500:CDS 35.0%
TGAAAACTCGGTTCAACTAA+GGG + chr1_4:20916518-20916537 Msa0155500:CDS 35.0%
! CTGAAAGTGTAAGGAATGAA+TGG + chr1_4:20916656-20916675 Msa0155500:three_prime_UTR 35.0%
GCCAAATTAAGACAACAGAA+TGG + chr1_4:20916800-20916819 Msa0155500:three_prime_UTR 35.0%
!! AGATGGTGGAATGATCTGTA+TGG - chr1_4:20912609-20912628 None:intergenic 40.0%
!!! TTGTTGGTTTTGGAGATGGT+TGG - chr1_4:20912647-20912666 None:intergenic 40.0%
!!! CATCTTGTTGGTTTTGGAGA+TGG - chr1_4:20912651-20912670 None:intergenic 40.0%
CATCTCCAAAACCAACAAGA+TGG + chr1_4:20912649-20912668 Msa0155500:CDS 40.0%
!!! TGAACCCATCTTGTTGGTTT+TGG - chr1_4:20912657-20912676 None:intergenic 40.0%
CGAATTTGAACCCATCTTGT+TGG - chr1_4:20912663-20912682 None:intergenic 40.0%
! TTCGAGGTATGATGATGATG+AGG - chr1_4:20912691-20912710 None:intergenic 40.0%
CATCATCATACCTCGAAATG+TGG + chr1_4:20912694-20912713 Msa0155500:CDS 40.0%
!! AGCGGTAAGTTTGTTGAAGT+GGG - chr1_4:20912751-20912770 None:intergenic 40.0%
!! AAGCGGTAAGTTTGTTGAAG+TGG - chr1_4:20912752-20912771 None:intergenic 40.0%
! GATTCTAGAGGTTTCAAGTG+AGG + chr1_4:20912827-20912846 Msa0155500:CDS 40.0%
ATAATGTAGGGACTGTGGTT+TGG + chr1_4:20913079-20913098 Msa0155500:intron 40.0%
AGTTTAATCTGGACGCACAT+AGG + chr1_4:20913353-20913372 Msa0155500:intron 40.0%
ATGAAGCACATATACGGACA+TGG - chr1_4:20913547-20913566 None:intergenic 40.0%
TGTCCGTATATGTGCTTCAT+AGG + chr1_4:20913547-20913566 Msa0155500:intron 40.0%
AGACCTTAGTTAAGGGATTC+GGG - chr1_4:20913651-20913670 None:intergenic 40.0%
TGAAAAACAATGTGGTTGGG+AGG + chr1_4:20913690-20913709 Msa0155500:intron 40.0%
GAAAAACAATGTGGTTGGGA+GGG + chr1_4:20913691-20913710 Msa0155500:intron 40.0%
AAAAACAATGTGGTTGGGAG+GGG + chr1_4:20913692-20913711 Msa0155500:intron 40.0%
! TTTCTGGTAGAGATCAGTCA+TGG + chr1_4:20913743-20913762 Msa0155500:intron 40.0%
TTCTGGTAGAGATCAGTCAT+GGG + chr1_4:20913744-20913763 Msa0155500:intron 40.0%
AAGAGTCCGGAACACAAAAT+GGG + chr1_4:20914162-20914181 Msa0155500:CDS 40.0%
! AAGAGTCCCATTTTGTGTTC+CGG - chr1_4:20914171-20914190 None:intergenic 40.0%
! ACTCTTTTTGTGCCAAAGTC+AGG + chr1_4:20914185-20914204 Msa0155500:CDS 40.0%
TCTTTCTGTGTTCCTGACTT+TGG - chr1_4:20914200-20914219 None:intergenic 40.0%
AAGTCAGGAACACAGAAAGA+TGG + chr1_4:20914200-20914219 Msa0155500:CDS 40.0%
ATGACCAAAAATCAGGACCT+GGG - chr1_4:20914229-20914248 None:intergenic 40.0%
ATCCAATCCTGTTATCGAGA+AGG + chr1_4:20914334-20914353 Msa0155500:CDS 40.0%
TTCCTTCTCGATAACAGGAT+TGG - chr1_4:20914339-20914358 None:intergenic 40.0%
ATCCTGTTATCGAGAAGGAA+AGG + chr1_4:20914339-20914358 Msa0155500:CDS 40.0%
TTTGAACCTCTAACGATGAC+TGG - chr1_4:20914439-20914458 None:intergenic 40.0%
AGACTCTACATTCGAAGAAG+CGG - chr1_4:20914462-20914481 None:intergenic 40.0%
! TTCTTTTCCTCTTCCACAGA+AGG - chr1_4:20914485-20914504 None:intergenic 40.0%
TGATTTACTGTCCACTTCGA+GGG - chr1_4:20914552-20914571 None:intergenic 40.0%
ATGATTTACTGTCCACTTCG+AGG - chr1_4:20914553-20914572 None:intergenic 40.0%
! TAGAGTGGCAAGAGAAGTTT+TGG + chr1_4:20914693-20914712 Msa0155500:CDS 40.0%
! AGAGTGGCAAGAGAAGTTTT+GGG + chr1_4:20914694-20914713 Msa0155500:CDS 40.0%
GAGTTTGGCTATAAGGAACT+TGG + chr1_4:20914728-20914747 Msa0155500:CDS 40.0%
!! GAACTTGGTTCTGAGAAATC+TGG + chr1_4:20914743-20914762 Msa0155500:CDS 40.0%
AAATCTGGACGTGATGCAAA+TGG + chr1_4:20914758-20914777 Msa0155500:CDS 40.0%
AATAATGCTAACCTGACGCA+TGG - chr1_4:20914813-20914832 None:intergenic 40.0%
TCACCTGAAAACCAAGTGAT+TGG + chr1_4:20914878-20914897 Msa0155500:intron 40.0%
!! AGACCAATCACTTGGTTTTC+AGG - chr1_4:20914884-20914903 None:intergenic 40.0%
!! TGGTCAATGGACTGTACTTA+AGG + chr1_4:20914908-20914927 Msa0155500:intron 40.0%
TTTCAGCCAGGGAACAAATT+CGG - chr1_4:20914952-20914971 None:intergenic 40.0%
CTTATGAACCTACAGAGTGT+TGG + chr1_4:20915179-20915198 Msa0155500:intron 40.0%
! TGAAGTATCCAACACTCTGT+AGG - chr1_4:20915190-20915209 None:intergenic 40.0%
TGAGCATGATTATCAATGGC+AGG + chr1_4:20915222-20915241 Msa0155500:intron 40.0%
TGGAGAAAACTGCAGACAAA+TGG + chr1_4:20915263-20915282 Msa0155500:CDS 40.0%
GGAGAAAACTGCAGACAAAT+GGG + chr1_4:20915264-20915283 Msa0155500:CDS 40.0%
GAGAAAACTGCAGACAAATG+GGG + chr1_4:20915265-20915284 Msa0155500:CDS 40.0%
GAAATGGTAAAGGTGATGAG+TGG + chr1_4:20915290-20915309 Msa0155500:CDS 40.0%
TTTGAACACTACAATGCGTC+TGG + chr1_4:20915325-20915344 Msa0155500:CDS 40.0%
!! ATCGCAAATGAGCATTGAGT+GGG - chr1_4:20915583-20915602 None:intergenic 40.0%
ACAGGATATAAGCATGTCTC+AGG + chr1_4:20915620-20915639 Msa0155500:intron 40.0%
CAGGATATAAGCATGTCTCA+GGG + chr1_4:20915621-20915640 Msa0155500:intron 40.0%
TGCATACAAAGAGCAGAAGT+TGG - chr1_4:20915902-20915921 None:intergenic 40.0%
AAAAAGGGAAGCAAAGTGGA+GGG - chr1_4:20915984-20916003 None:intergenic 40.0%
TAAAAAGGGAAGCAAAGTGG+AGG - chr1_4:20915985-20916004 None:intergenic 40.0%
! CAAAACCTTGGGTAAGGTTT+TGG - chr1_4:20916043-20916062 None:intergenic 40.0%
TTGTGATCTGTTCCTTTGTC+AGG + chr1_4:20916172-20916191 Msa0155500:intron 40.0%
CACACGAAATGCAAGATACT+TGG + chr1_4:20916457-20916476 Msa0155500:CDS 40.0%
! CAAGCTCTTCTGAAAGTGTA+AGG + chr1_4:20916647-20916666 Msa0155500:three_prime_UTR 40.0%
ACTGTAGGGAGAATGGTGAA+TGG - chr1_4:20912535-20912554 None:intergenic 45.0%
TATGGTGTGGTTGTGGTGAA+GGG - chr1_4:20912591-20912610 None:intergenic 45.0%
TGATCTGTATGGTGTGGTTG+TGG - chr1_4:20912598-20912617 None:intergenic 45.0%
GTGGAATGATCTGTATGGTG+TGG - chr1_4:20912604-20912623 None:intergenic 45.0%
!!! TTGGTTTTGGAGATGGTTGG+TGG - chr1_4:20912644-20912663 None:intergenic 45.0%
TGGCTTTCTTCCACATTTCG+AGG - chr1_4:20912707-20912726 None:intergenic 45.0%
AGCAACAGTGTTCGTTCTGA+TGG + chr1_4:20912936-20912955 Msa0155500:CDS 45.0%
ACATATACGGACATGGACAC+CGG - chr1_4:20913540-20913559 None:intergenic 45.0%
CGTTCTTACGTGGCAATGTA+TGG - chr1_4:20913599-20913618 None:intergenic 45.0%
ATGCAATGCTCGTTCTTACG+TGG - chr1_4:20913609-20913628 None:intergenic 45.0%
! CGTAAGAACGAGCATTGCAT+TGG + chr1_4:20913609-20913628 Msa0155500:intron 45.0%
! TGCATTGGTCTGAGTGAAAC+TGG + chr1_4:20913624-20913643 Msa0155500:intron 45.0%
ACTGATCTCTACCAGAAACC+TGG - chr1_4:20913741-20913760 None:intergenic 45.0%
CAAGAGTCCGGAACACAAAA+TGG + chr1_4:20914161-20914180 Msa0155500:CDS 45.0%
ACACAGAAAGATGGTATCCC+AGG + chr1_4:20914209-20914228 Msa0155500:CDS 45.0%
! GTATCCCAGGTCCTGATTTT+TGG + chr1_4:20914222-20914241 Msa0155500:CDS 45.0%
CATGACCAAAAATCAGGACC+TGG - chr1_4:20914230-20914249 None:intergenic 45.0%
!!! CAGGTCCTGATTTTTGGTCA+TGG + chr1_4:20914228-20914247 Msa0155500:CDS 45.0%
GGTGTCCATGACCAAAAATC+AGG - chr1_4:20914236-20914255 None:intergenic 45.0%
AAGGAACATCACTATCCACC+GGG - chr1_4:20914259-20914278 None:intergenic 45.0%
GAAGGAACATCACTATCCAC+CGG - chr1_4:20914260-20914279 None:intergenic 45.0%
GACCTTTCCTTCTCGATAAC+AGG - chr1_4:20914344-20914363 None:intergenic 45.0%
GAATGTAGAGTCTCCTTCTG+TGG + chr1_4:20914469-20914488 Msa0155500:CDS 45.0%
CCATCAGGATTCACACCAAT+AGG - chr1_4:20914578-20914597 None:intergenic 45.0%
CCTATTGGTGTGAATCCTGA+TGG + chr1_4:20914575-20914594 Msa0155500:CDS 45.0%
TGAATCCTGATGGAACGAGA+TGG + chr1_4:20914585-20914604 Msa0155500:CDS 45.0%
GGAATTGAGCAAAGACCTGA+TGG + chr1_4:20914620-20914639 Msa0155500:CDS 45.0%
!! GACCTGATGGTGTCATTTGT+AGG + chr1_4:20914633-20914652 Msa0155500:CDS 45.0%
CACCTACAAATGACACCATC+AGG - chr1_4:20914638-20914657 None:intergenic 45.0%
!! CTGATGGTGTCATTTGTAGG+TGG + chr1_4:20914636-20914655 Msa0155500:CDS 45.0%
!! GTGCTGACAAAGCTTTAGAG+TGG + chr1_4:20914678-20914697 Msa0155500:CDS 45.0%
!! ACCAAGTGATTGGTCTCAAG+TGG + chr1_4:20914888-20914907 Msa0155500:intron 45.0%
ACCACTTGAGACCAATCACT+TGG - chr1_4:20914892-20914911 None:intergenic 45.0%
!! GATTGGTCTCAAGTGGTCAA+TGG + chr1_4:20914895-20914914 Msa0155500:intron 45.0%
TCCCTGGCTGAAACAATCTT+TGG + chr1_4:20914959-20914978 Msa0155500:intron 45.0%
GCCAAAGATTGTTTCAGCCA+GGG - chr1_4:20914963-20914982 None:intergenic 45.0%
AGCCAAAGATTGTTTCAGCC+AGG - chr1_4:20914964-20914983 None:intergenic 45.0%
! GCTAGACTTTTCTTACCTCC+TGG + chr1_4:20914981-20915000 Msa0155500:intron 45.0%
! ACCCTCTTGTTTCCTGAGTT+CGG - chr1_4:20915007-20915026 None:intergenic 45.0%
TCCTTTGCAAACTGTAGCCT+TGG + chr1_4:20915143-20915162 Msa0155500:intron 45.0%
ACCAAGGCTACAGTTTGCAA+AGG - chr1_4:20915147-20915166 None:intergenic 45.0%
GCAGACAAATGGGGAAGAAA+TGG + chr1_4:20915274-20915293 Msa0155500:CDS 45.0%
GTGATGAGTGGCAGGAAAAT+TGG + chr1_4:20915302-20915321 Msa0155500:CDS 45.0%
GTCTGGTCAAGCTGAGAAAT+GGG + chr1_4:20915342-20915361 Msa0155500:CDS 45.0%
CTGAGAAATGGGCACACAAA+TGG + chr1_4:20915353-20915372 Msa0155500:CDS 45.0%
!! CATCGCAAATGAGCATTGAG+TGG - chr1_4:20915584-20915603 None:intergenic 45.0%
!! AACCTTGGGTAAGGTTTTGG+AGG - chr1_4:20916040-20916059 None:intergenic 45.0%
GTTAACTCGCAGATTCTTCC+AGG - chr1_4:20916086-20916105 None:intergenic 45.0%
TGATCTGTTCCTTTGTCAGG+TGG + chr1_4:20916175-20916194 Msa0155500:intron 45.0%
GATCTGTTCCTTTGTCAGGT+GGG + chr1_4:20916176-20916195 Msa0155500:intron 45.0%
ATCTGTTCCTTTGTCAGGTG+GGG + chr1_4:20916177-20916196 Msa0155500:intron 45.0%
AGGTGGGGTGAAACATATGA+CGG + chr1_4:20916192-20916211 Msa0155500:intron 45.0%
!! GGTGAAACATATGACGGGTA+TGG + chr1_4:20916198-20916217 Msa0155500:CDS 45.0%
!! GAAACATATGACGGGTATGG+TGG + chr1_4:20916201-20916220 Msa0155500:CDS 45.0%
!! AGATGGTGGATGGGAGAAAT+GGG + chr1_4:20916263-20916282 Msa0155500:CDS 45.0%
AAATGCTCATGGCATCAAGC+AGG + chr1_4:20916314-20916333 Msa0155500:CDS 45.0%
AATGCTCATGGCATCAAGCA+GGG + chr1_4:20916315-20916334 Msa0155500:CDS 45.0%
!! AGCAACACAATGGTTCTGGA+TGG + chr1_4:20916391-20916410 Msa0155500:CDS 45.0%
!! GCAACACAATGGTTCTGGAT+GGG + chr1_4:20916392-20916411 Msa0155500:CDS 45.0%
! TCTGGATGGGTTCACAAGTA+CGG + chr1_4:20916405-20916424 Msa0155500:CDS 45.0%
AAGTACGGAAAGAGCAGTAG+TGG + chr1_4:20916420-20916439 Msa0155500:CDS 45.0%
AGAGCAGTAGTGGTGAACAT+TGG + chr1_4:20916430-20916449 Msa0155500:CDS 45.0%
GAGCAGTAGTGGTGAACATT+GGG + chr1_4:20916431-20916450 Msa0155500:CDS 45.0%
TAGGGTTCTTGCCTTTCAGA+AGG - chr1_4:20916555-20916574 None:intergenic 45.0%
!!! TTTTATTTTTTATTTTTTGA+AGG + chr1_4:20913261-20913280 Msa0155500:intron 5.0%
GTAGGGAGAATGGTGAATGG+TGG - chr1_4:20912532-20912551 None:intergenic 50.0%
GCTTGTGACTGTAGGGAGAA+TGG - chr1_4:20912542-20912561 None:intergenic 50.0%
GCATGGAGCTTGTGACTGTA+GGG - chr1_4:20912549-20912568 None:intergenic 50.0%
TGCATGGAGCTTGTGACTGT+AGG - chr1_4:20912550-20912569 None:intergenic 50.0%
CAGTCACAAGCTCCATGCAA+TGG + chr1_4:20912551-20912570 Msa0155500:exon 50.0%
! TGTGGTGAAGGGTTTCAGGT+GGG - chr1_4:20912580-20912599 None:intergenic 50.0%
TTGTGGTGAAGGGTTTCAGG+TGG - chr1_4:20912581-20912600 None:intergenic 50.0%
TGGTTGTGGTGAAGGGTTTC+AGG - chr1_4:20912584-20912603 None:intergenic 50.0%
GTATGGTGTGGTTGTGGTGA+AGG - chr1_4:20912592-20912611 None:intergenic 50.0%
!!! GTTTTGGAGATGGTTGGTGG+TGG - chr1_4:20912641-20912660 None:intergenic 50.0%
! TGCTGCTAGAGCGCTTCTTA+AGG + chr1_4:20912905-20912924 Msa0155500:CDS 50.0%
!! TAGGGACTGTGGTTTGGTGA+TGG + chr1_4:20913085-20913104 Msa0155500:intron 50.0%
GTCAGTGTCCATGTTGTGTC+CGG + chr1_4:20913518-20913537 Msa0155500:intron 50.0%
GGACCCGAATCCCTTAACTA+AGG + chr1_4:20913645-20913664 Msa0155500:intron 50.0%
!! TTTTTGGTCATGGACACCCC+CGG + chr1_4:20914238-20914257 Msa0155500:CDS 50.0%
AGGAACATCACTATCCACCG+GGG - chr1_4:20914258-20914277 None:intergenic 50.0%
TCTAACGATGACTGGAGTGG+TGG - chr1_4:20914431-20914450 None:intergenic 50.0%
ACCACTCCAGTCATCGTTAG+AGG + chr1_4:20914430-20914449 Msa0155500:CDS 50.0%
ACCTCTAACGATGACTGGAG+TGG - chr1_4:20914434-20914453 None:intergenic 50.0%
AGAGTCTCCTTCTGTGGAAG+AGG + chr1_4:20914475-20914494 Msa0155500:CDS 50.0%
CTCGAACTACTTCTGCTGCA+TGG - chr1_4:20914529-20914548 None:intergenic 50.0%
ATCCTGATGGAACGAGATGG+TGG + chr1_4:20914588-20914607 Msa0155500:CDS 50.0%
!! AACGAGATGGTGGAGAGAGA+CGG + chr1_4:20914598-20914617 Msa0155500:CDS 50.0%
TGTAGGTGGACAGTGATCAG+AGG + chr1_4:20914650-20914669 Msa0155500:CDS 50.0%
!!! GTGGCAAGAGAAGTTTTGGG+AGG + chr1_4:20914697-20914716 Msa0155500:CDS 50.0%
TGGGAGGCTTCTGATGAGTT+TGG + chr1_4:20914713-20914732 Msa0155500:CDS 50.0%
TTGGAGAGAATCCATGCGTC+AGG + chr1_4:20914799-20914818 Msa0155500:CDS 50.0%
! GGAACACCGAATTTGTTCCC+TGG + chr1_4:20914943-20914962 Msa0155500:intron 50.0%
GCCGAACTCAGGAAACAAGA+GGG + chr1_4:20915003-20915022 Msa0155500:intron 50.0%
!! GGAAAACGGGCTACTGCATA+TGG + chr1_4:20915243-20915262 Msa0155500:intron 50.0%
TGGTAAAGGTGATGAGTGGC+AGG + chr1_4:20915294-20915313 Msa0155500:CDS 50.0%
CGTCTGGTCAAGCTGAGAAA+TGG + chr1_4:20915341-20915360 Msa0155500:CDS 50.0%
ATGCTCATGTCTGGCACGAA+AGG + chr1_4:20915413-20915432 Msa0155500:CDS 50.0%
!!! AGGTTTTGGAGGCTGACACA+GGG - chr1_4:20916029-20916048 None:intergenic 50.0%
!!! AAGGTTTTGGAGGCTGACAC+AGG - chr1_4:20916030-20916049 None:intergenic 50.0%
AGCCTCCAAAACCTTACCCA+AGG + chr1_4:20916035-20916054 Msa0155500:intron 50.0%
TGTTTCACCCCACCTGACAA+AGG - chr1_4:20916187-20916206 None:intergenic 50.0%
GGTGGGGTGAAACATATGAC+GGG + chr1_4:20916193-20916212 Msa0155500:intron 50.0%
TCCACCATCTGTTGAACGCT+CGG - chr1_4:20916253-20916272 None:intergenic 50.0%
!! AGCGTTCAACAGATGGTGGA+TGG + chr1_4:20916253-20916272 Msa0155500:CDS 50.0%
!! GCGTTCAACAGATGGTGGAT+GGG + chr1_4:20916254-20916273 Msa0155500:CDS 50.0%
!! CAGATGGTGGATGGGAGAAA+TGG + chr1_4:20916262-20916281 Msa0155500:CDS 50.0%
!! GATGGTGGATGGGAGAAATG+GGG + chr1_4:20916264-20916283 Msa0155500:CDS 50.0%
GGAGAAATGGGGCGACAAAT+GGG + chr1_4:20916275-20916294 Msa0155500:CDS 50.0%
! ACATGGTGGGAAGGTAAGCA+CGG + chr1_4:20916342-20916361 Msa0155500:CDS 50.0%
ACTTGGGGTGAGCAACACAA+TGG + chr1_4:20916381-20916400 Msa0155500:CDS 50.0%
GGTGAGCAACACAATGGTTC+TGG + chr1_4:20916387-20916406 Msa0155500:CDS 50.0%
!! ATGGTTGGTGGTGGTGGTGA+TGG - chr1_4:20912632-20912651 None:intergenic 55.0%
!! TTGGAGATGGTTGGTGGTGG+TGG - chr1_4:20912638-20912657 None:intergenic 55.0%
CTTACCGCTTCCAACGACGA+CGG + chr1_4:20912762-20912781 Msa0155500:CDS 55.0%
CATGGACACCGGACACAACA+TGG - chr1_4:20913529-20913548 None:intergenic 55.0%
GAGGGGAGACTCCACTATAG+CGG + chr1_4:20913709-20913728 Msa0155500:intron 55.0%
GGAACATCACTATCCACCGG+GGG - chr1_4:20914257-20914276 None:intergenic 55.0%
! GACTGGAGTGGTGGAAGTGT+AGG - chr1_4:20914422-20914441 None:intergenic 55.0%
AGTAGTTCGAGCCCTCGAAG+TGG + chr1_4:20914538-20914557 Msa0155500:CDS 55.0%
CTCCACCATCTCGTTCCATC+AGG - chr1_4:20914593-20914612 None:intergenic 55.0%
!! ACGAGATGGTGGAGAGAGAC+GGG + chr1_4:20914599-20914618 Msa0155500:CDS 55.0%
CTTGTTTCCTGAGTTCGGCC+AGG - chr1_4:20915002-20915021 None:intergenic 55.0%
GGCCGAACTCAGGAAACAAG+AGG + chr1_4:20915002-20915021 Msa0155500:intron 55.0%
! CAGCATCGAGGGGTGTGTTT+GGG - chr1_4:20915390-20915409 None:intergenic 55.0%
CAAACACACCCCTCGATGCT+GGG + chr1_4:20915389-20915408 Msa0155500:CDS 55.0%
! ATGAGCATGCCCAGCATCGA+GGG - chr1_4:20915401-20915420 None:intergenic 55.0%
ATGCTGGGCATGCTCATGTC+TGG + chr1_4:20915404-20915423 Msa0155500:CDS 55.0%
AGGGAAGCAAAGTGGAGGGT+GGG - chr1_4:20915980-20915999 None:intergenic 55.0%
AAGGGAAGCAAAGTGGAGGG+TGG - chr1_4:20915981-20916000 None:intergenic 55.0%
GGGAGAAATGGGGCGACAAA+TGG + chr1_4:20916274-20916293 Msa0155500:CDS 55.0%
GCATCAAGCAGGGAGAGACA+TGG + chr1_4:20916325-20916344 Msa0155500:CDS 55.0%
TCAAGCAGGGAGAGACATGG+TGG + chr1_4:20916328-20916347 Msa0155500:CDS 55.0%
CAAGCAGGGAGAGACATGGT+GGG + chr1_4:20916329-20916348 Msa0155500:CDS 55.0%
! TGTGTTGCTCACCCCAAGTC+CGG - chr1_4:20916380-20916399 None:intergenic 55.0%
TCAGGTGGGTCGCCATTGCA+TGG - chr1_4:20912566-20912585 None:intergenic 60.0%
!! GGTGGTGGTGATGGAGATGG+TGG - chr1_4:20912623-20912642 None:intergenic 60.0%
!! GGTGGTGGTGGTGATGGAGA+TGG - chr1_4:20912626-20912645 None:intergenic 60.0%
! CCTGGCTGACTCCGCTATAG+TGG - chr1_4:20913723-20913742 None:intergenic 60.0%
! CCACTATAGCGGAGTCAGCC+AGG + chr1_4:20913720-20913739 Msa0155500:intron 60.0%
AGCGGAGTCAGCCAGGTTTC+TGG + chr1_4:20913727-20913746 Msa0155500:intron 60.0%
CTTACCTCCTGGCCGAACTC+AGG + chr1_4:20914992-20915011 Msa0155500:intron 60.0%
GTTTCCTGAGTTCGGCCAGG+AGG - chr1_4:20914999-20915018 None:intergenic 60.0%
! CCAGCATCGAGGGGTGTGTT+TGG - chr1_4:20915391-20915410 None:intergenic 60.0%
CCAAACACACCCCTCGATGC+TGG + chr1_4:20915388-20915407 Msa0155500:CDS 60.0%
! TGAGCATGCCCAGCATCGAG+GGG - chr1_4:20915400-20915419 None:intergenic 60.0%
CATGAGCATGCCCAGCATCG+AGG - chr1_4:20915402-20915421 None:intergenic 60.0%
AGGCTGACACAGGGTAGCCT+TGG - chr1_4:20916020-20916039 None:intergenic 60.0%
TGGGCCGAGCGTTCAACAGA+TGG + chr1_4:20916246-20916265 Msa0155500:CDS 60.0%
GCCGAGCGTTCAACAGATGG+TGG + chr1_4:20916249-20916268 Msa0155500:CDS 60.0%
! CAGGGAGAGACATGGTGGGA+AGG + chr1_4:20916333-20916352 Msa0155500:CDS 60.0%
! AAGGTAAGCACGGAGAGCGC+TGG + chr1_4:20916352-20916371 Msa0155500:CDS 60.0%
!! AGAGCGCTGGAACCGGACTT+GGG + chr1_4:20916365-20916384 Msa0155500:CDS 60.0%
CACGCCGTCGTCGTTGGAAG+CGG - chr1_4:20912769-20912788 None:intergenic 65.0%
CTCTTCCACGCCGTCGTCGT+TGG - chr1_4:20912775-20912794 None:intergenic 65.0%
TTGGTCATGGACACCCCCGG+TGG + chr1_4:20914241-20914260 Msa0155500:CDS 65.0%
!! AGCACGGAGAGCGCTGGAAC+CGG + chr1_4:20916358-20916377 Msa0155500:CDS 65.0%
!! GAGAGCGCTGGAACCGGACT+TGG + chr1_4:20916364-20916383 Msa0155500:CDS 65.0%
!! GAGCGCTGGAACCGGACTTG+GGG + chr1_4:20916366-20916385 Msa0155500:CDS 65.0%
CGCTTCCAACGACGACGGCG+TGG + chr1_4:20912767-20912786 Msa0155500:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 20912505 20916854 20912505 ID=Msa0155500;Name=Msa0155500
chr1_4 mRNA 20912505 20916854 20912505 ID=Msa0155500-mRNA-1;Parent=Msa0155500;Name=Msa0155500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=65|1|1|1|1|1|4|279|559
chr1_4 exon 20912505 20912978 20912505 ID=Msa0155500-mRNA-1:exon:7563;Parent=Msa0155500-mRNA-1
chr1_4 exon 20914123 20914820 20914123 ID=Msa0155500-mRNA-1:exon:7564;Parent=Msa0155500-mRNA-1
chr1_4 exon 20915244 20915434 20915244 ID=Msa0155500-mRNA-1:exon:7565;Parent=Msa0155500-mRNA-1
chr1_4 exon 20916194 20916854 20916194 ID=Msa0155500-mRNA-1:exon:7566;Parent=Msa0155500-mRNA-1
chr1_4 five_prime_UTR 20912505 20912569 20912505 ID=Msa0155500-mRNA-1:five_prime_utr;Parent=Msa0155500-mRNA-1
chr1_4 CDS 20912570 20912978 20912570 ID=Msa0155500-mRNA-1:cds;Parent=Msa0155500-mRNA-1
chr1_4 CDS 20914123 20914820 20914123 ID=Msa0155500-mRNA-1:cds;Parent=Msa0155500-mRNA-1
chr1_4 CDS 20915244 20915434 20915244 ID=Msa0155500-mRNA-1:cds;Parent=Msa0155500-mRNA-1
chr1_4 CDS 20916194 20916575 20916194 ID=Msa0155500-mRNA-1:cds;Parent=Msa0155500-mRNA-1
chr1_4 three_prime_UTR 20916576 20916854 20916576 ID=Msa0155500-mRNA-1:three_prime_utr;Parent=Msa0155500-mRNA-1
Gene Sequence

>Msa0155500

ATGGCGACCCACCTGAAACCCTTCACCACAACCACACCATACAGATCATTCCACCATCTCCATCACCACCACCACCAACCATCTCCAAAACCAACAAGATGGGTTCAAATTCGAGCAACCTCATCATCATCATACCTCGAAATGTGGAAGAAAGCCATAGAACGAGAAAGAAACACAACCCACTTCAACAAACTTACCGCTTCCAACGACGACGGCGTGGAAGAGAATCTAGAGAAGAAAACTCAAGAGTTTCAGAAGATTCTAGAGGTTTCAAGTGAGGAACGTGATAGAATTCAGAGATTGCAGGTTATTGATCGTGCTTCTGCTGCAATTGCTGCTGCTAGAGCGCTTCTTAAGGATGCTAATAGCAACAGTGTTCGTTCTGATGGAGATACGTTACAGAAATATGAATCAGATTCAGGAAAGAAGAATGACAGTATTTTTGTGCAAGAGTCCGGAACACAAAATGGGACTCTTTTTGTGCCAAAGTCAGGAACACAGAAAGATGGTATCCCAGGTCCTGATTTTTGGTCATGGACACCCCCGGTGGATAGTGATGTTCCTTCAAATGATGCTAATGGGTTGAAGTTAGATACCAAGTCTTCAGTTAATCCAACATTATCCAATCCTGTTATCGAGAAGGAAAGGTCGTCGCAATCTCTCTTGCTTCCATTTGAGAGTTTACTTACTCAAAGCAAAAACTTTCCTACACTTCCACCACTCCAGTCATCGTTAGAGGTTCAAACCGCTTCTTCGAATGTAGAGTCTCCTTCTGTGGAAGAGGAAAAGAAACGCGATGCGTTATCTTCAGACCATGCAGCAGAAGTAGTTCGAGCCCTCGAAGTGGACAGTAAATCATCACCTATTGGTGTGAATCCTGATGGAACGAGATGGTGGAGAGAGACGGGAATTGAGCAAAGACCTGATGGTGTCATTTGTAGGTGGACAGTGATCAGAGGTGTTAGTGCTGACAAAGCTTTAGAGTGGCAAGAGAAGTTTTGGGAGGCTTCTGATGAGTTTGGCTATAAGGAACTTGGTTCTGAGAAATCTGGACGTGATGCAAATGGAAATGTTTGGCGTGAATTTTGGAGAGAATCCATGCGTCAGGAAAACGGGCTACTGCATATGGAGAAAACTGCAGACAAATGGGGAAGAAATGGTAAAGGTGATGAGTGGCAGGAAAATTGGTTTGAACACTACAATGCGTCTGGTCAAGCTGAGAAATGGGCACACAAATGGTGCAGTATTGACCCAAACACACCCCTCGATGCTGGGCATGCTCATGTCTGGCACGAAAGGTGGGGTGAAACATATGACGGGTATGGTGGCAGCATAAAATACACTGACAAATGGGCCGAGCGTTCAACAGATGGTGGATGGGAGAAATGGGGCGACAAATGGGATGAAAATTTCGATCTAAATGCTCATGGCATCAAGCAGGGAGAGACATGGTGGGAAGGTAAGCACGGAGAGCGCTGGAACCGGACTTGGGGTGAGCAACACAATGGTTCTGGATGGGTTCACAAGTACGGAAAGAGCAGTAGTGGTGAACATTGGGACACACACGAAATGCAAGATACTTGGTATGAAAGATTCCCTCATTTTGGTTTCTTTCACTGCTTTGAAAACTCGGTTCAACTAAGGGAAGTACAAAAACCTTCTGAAAGGCAAGAACCCTAA
Protein sequence

>Msa0155500

MATHLKPFTTTTPYRSFHHLHHHHHQPSPKPTRWVQIRATSSSSYLEMWKKAIERERNTTHFNKLTASNDDGVEENLEKKTQEFQKILEVSSEERDRIQRLQVIDRASAAIAAARALLKDANSNSVRSDGDTLQKYESDSGKKNDSIFVQESGTQNGTLFVPKSGTQKDGIPGPDFWSWTPPVDSDVPSNDANGLKLDTKSSVNPTLSNPVIEKERSSQSLLLPFESLLTQSKNFPTLPPLQSSLEVQTASSNVESPSVEEEKKRDALSSDHAAEVVRALEVDSKSSPIGVNPDGTRWWRETGIEQRPDGVICRWTVIRGVSADKALEWQEKFWEASDEFGYKELGSEKSGRDANGNVWREFWRESMRQENGLLHMEKTADKWGRNGKGDEWQENWFEHYNASGQAEKWAHKWCSIDPNTPLDAGHAHVWHERWGETYDGYGGSIKYTDKWAERSTDGGWEKWGDKWDENFDLNAHGIKQGETWWEGKHGERWNRTWGEQHNGSGWVHKYGKSSSGEHWDTHEMQDTWYERFPHFGFFHCFENSVQLREVQKPSERQEP*