AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050850 MtrunA17_Chr1g0155591 96.667 240 8 0 1 240 1 240 5.68e-177 485
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050850 AT1G35180.1 62.996 227 82 1 2 226 3 229 3.12e-110 317
Msa0050850 AT1G35170.1 63.033 211 76 1 16 226 19 227 1.85e-100 291
Msa0050850 AT1G45010.1 62.115 227 84 1 2 226 3 229 3.78e-100 291
Msa0050850 AT1G35170.4 62.431 181 68 0 16 196 19 199 6.08e-85 252
Msa0050850 AT1G45010.3 60.622 193 74 1 2 192 3 195 1.01e-81 244
Msa0050850 AT1G45010.2 64.706 153 54 0 74 226 1 153 7.80e-73 219
Msa0050850 AT1G35170.2 65.753 146 50 0 16 161 19 164 9.77e-72 217
Msa0050850 AT1G35170.3 65.753 146 50 0 16 161 19 164 9.77e-72 217
Msa0050850 AT1G45010.4 62.346 162 59 1 2 161 3 164 9.98e-69 209

Find 75 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAAAATCTGAATGATTTA+TGG 0.119660 1_2:-4889939 None:intergenic
TTACATCTGCAGTCAAATTA+AGG 0.189859 1_2:-4888441 None:intergenic
TATTCATTGGACAATAATTT+AGG 0.228489 1_2:+4889698 Msa0050850:three_prime_UTR
TGATGCGATAACATCATATT+TGG 0.229936 1_2:+4889780 Msa0050850:three_prime_UTR
CTTGATGAGAAATGGGTTAT+TGG 0.254552 1_2:-4889272 None:intergenic
CTTTATTATACAATTATATA+TGG 0.267432 1_2:-4886640 None:intergenic
TTTGAAGCCACTGGACAAAT+TGG 0.271253 1_2:-4886974 None:intergenic
GAGAAATCAAATGAACGTTT+TGG 0.301030 1_2:-4886875 None:intergenic
TTTGGATGATGATGATTTCT+TGG 0.316280 1_2:-4889499 None:intergenic
GTCCCACAATGCTTACTAAA+TGG 0.321372 1_2:-4887222 None:intergenic
ATTTCATAGCTATATTTATA+CGG 0.323646 1_2:+4886443 None:intergenic
CTACTTTATCTGTTCAAGAT+TGG 0.324800 1_2:+4886945 Msa0050850:CDS
ATTCTACATCAATCAGTGTT+TGG 0.326066 1_2:+4889576 Msa0050850:three_prime_UTR
TATTATACCTTGATGAGAAA+TGG 0.337195 1_2:-4889280 None:intergenic
ATTTGATCAGATGGAAGTTC+TGG 0.337359 1_2:+4887120 Msa0050850:intron
CAGAGATGGTGGGAGCAGTA+TGG 0.350230 1_2:+4888347 Msa0050850:CDS
TTTCGTACATATATATTCAT+TGG 0.352894 1_2:+4889685 Msa0050850:three_prime_UTR
TGCAGCTGGTAAGTACATTC+TGG 0.354832 1_2:+4889439 Msa0050850:CDS
CTATTACAGGCTATGGGATT+GGG 0.373800 1_2:+4889414 Msa0050850:intron
CATTTCACAAGCTTTGAGTT+TGG 0.374521 1_2:+4889823 Msa0050850:three_prime_UTR
TTCTACATCAATCAGTGTTT+GGG 0.376016 1_2:+4889577 Msa0050850:three_prime_UTR
TTGAAGAGAATATAGAGAAA+TGG 0.376482 1_2:+4886775 Msa0050850:exon
AATCTGAATGATTTATGGTT+AGG 0.380485 1_2:-4889934 None:intergenic
ACAATAATTTAGGAGGAGAT+TGG 0.391152 1_2:+4889708 Msa0050850:three_prime_UTR
ACATTTGCTAGGATGATGAT+TGG 0.391517 1_2:+4889220 Msa0050850:CDS
TACATCTGCAGTCAAATTAA+GGG 0.403745 1_2:-4888440 None:intergenic
AAGTACTTTATATCATTCAT+TGG 0.414126 1_2:-4889612 None:intergenic
ATTATACCTTGATGAGAAAT+GGG 0.416729 1_2:-4889279 None:intergenic
AGCTCCCTCAAATGCAAGAA+TGG 0.423674 1_2:-4888388 None:intergenic
ACTATTACAGGCTATGGGAT+TGG 0.428555 1_2:+4889413 Msa0050850:intron
TTCAAATTCTTCTTACAGAC+AGG 0.438036 1_2:+4886991 Msa0050850:CDS
CAAGCCCATTCTTGCATTTG+AGG 0.445389 1_2:+4888383 Msa0050850:CDS
TCTAAAGGAGCTTGGTTACA+AGG 0.454047 1_2:+4888411 Msa0050850:CDS
GTTCATTTGATTTCTCCAAC+AGG 0.463083 1_2:+4886882 Msa0050850:CDS
GCATTTGAGGGAGCTTCTAA+AGG 0.464317 1_2:+4888396 Msa0050850:CDS
AAGCCCATTCTTGCATTTGA+GGG 0.465855 1_2:+4888384 Msa0050850:CDS
CACCATTTAGTAAGCATTGT+GGG 0.466117 1_2:+4887220 Msa0050850:CDS
CAATAACCCATTTCTCATCA+AGG 0.469006 1_2:+4889273 Msa0050850:CDS
TATGGGATTGGGTTTGCAGC+TGG 0.477409 1_2:+4889425 Msa0050850:CDS
AGCATTGTGGGACTGATAGC+TGG 0.478228 1_2:+4887232 Msa0050850:CDS
GCTCCCTCAAATGCAAGAAT+GGG 0.481370 1_2:-4888387 None:intergenic
ACACCACCAGCATCAAAAGC+AGG 0.487485 1_2:+4889535 Msa0050850:CDS
CTTCGACTATTACAGGCTAT+GGG 0.490448 1_2:+4889408 Msa0050850:intron
ATGCTATGGTTGCATCTAAG+AGG 0.491529 1_2:-4886576 None:intergenic
AGGGAGCTTCTAAAGGAGCT+TGG 0.499104 1_2:+4888403 Msa0050850:CDS
ATTGACTCTATTCCACTTGG+TGG 0.502846 1_2:-4889885 None:intergenic
TAAGAAGAATTTGAAGCCAC+TGG 0.506715 1_2:-4886983 None:intergenic
ACAAGCAAAATAATGATTGA+AGG 0.508742 1_2:-4889645 None:intergenic
AGCTGGCTTATGCTATCAAA+AGG 0.510458 1_2:+4887249 Msa0050850:CDS
CTTCAATATTTACATTTGCT+AGG 0.511008 1_2:+4889209 Msa0050850:CDS
AGAGATGGTGGGAGCAGTAT+GGG 0.512111 1_2:+4888348 Msa0050850:CDS
GTGAAAGCAAAATTTGTGAA+TGG 0.514429 1_2:-4889990 None:intergenic
TAAGAGAATATGCTATGCTA+TGG 0.517220 1_2:-4886590 None:intergenic
ATTCAAAAGACAATTGTGGT+TGG 0.543048 1_2:+4886806 Msa0050850:CDS
CTAATTGACTCTATTCCACT+TGG 0.545263 1_2:-4889888 None:intergenic
GATCATAAATTAGATATGAC+AGG 0.545515 1_2:-4887150 None:intergenic
TCATTGGACAATAATTTAGG+AGG 0.547156 1_2:+4889701 Msa0050850:three_prime_UTR
TATTATACAATTATATATGG+TGG 0.549398 1_2:-4886637 None:intergenic
CAAGCAAAATAATGATTGAA+GGG 0.550272 1_2:-4889644 None:intergenic
TGCTATGGTTGCATCTAAGA+GGG 0.555572 1_2:-4886575 None:intergenic
ATTGGAAGTTAATGTTACGT+AGG 0.557867 1_2:-4889254 None:intergenic
AATTGTAGAGACAATCCTGT+TGG 0.571539 1_2:-4886897 None:intergenic
TTCATCAAGATTCCACCAAG+TGG 0.577786 1_2:+4889873 Msa0050850:three_prime_UTR
GAAATGTCCAATTTGTCCAG+TGG 0.588096 1_2:+4886967 Msa0050850:CDS
CCACAATGCTTACTAAATGG+TGG 0.601229 1_2:-4887219 None:intergenic
CCACCATTTAGTAAGCATTG+TGG 0.612304 1_2:+4887219 Msa0050850:CDS
AATGTTACGTAGGTGATACA+AGG 0.616770 1_2:-4889244 None:intergenic
ATATATTCAAAAGACAATTG+TGG 0.625016 1_2:+4886802 Msa0050850:CDS
ACATCTGCAGTCAAATTAAG+GGG 0.627723 1_2:-4888439 None:intergenic
TGATATAAAGTACTTCAAAG+TGG 0.630502 1_2:+4889620 Msa0050850:three_prime_UTR
AAGCAAAATAATGATTGAAG+GGG 0.632171 1_2:-4889643 None:intergenic
TCAGTGTGGCTCAGAGATGG+TGG 0.640532 1_2:+4888336 Msa0050850:intron
CAGTGTGGCTCAGAGATGGT+GGG 0.652161 1_2:+4888337 Msa0050850:intron
TGATCAGTGTGGCTCAGAGA+TGG 0.653705 1_2:+4888333 Msa0050850:intron
GCTATGGTTGCATCTAAGAG+GGG 0.683081 1_2:-4886574 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATTTTTTAAAAATTT+TGG - chr1_2:4889038-4889057 None:intergenic 0.0%
!! CTTTATTATACAATTATATA+TGG - chr1_2:4886643-4886662 None:intergenic 10.0%
!!! AATCTAATATTTTAAGATTT+TGG + chr1_2:4887902-4887921 Msa0050850:intron 10.0%
!! TTAAAATAAAATATGCAAAT+TGG - chr1_2:4888222-4888241 None:intergenic 10.0%
!! GTACAAAATAAATAAATATT+TGG - chr1_2:4888489-4888508 None:intergenic 10.0%
!!! GTTTAAAATATAAAAACTAA+GGG - chr1_2:4889324-4889343 None:intergenic 10.0%
!!! TGTTTAAAATATAAAAACTA+AGG - chr1_2:4889325-4889344 None:intergenic 10.0%
!! TATTATACAATTATATATGG+TGG - chr1_2:4886640-4886659 None:intergenic 15.0%
!! ATATATCATTTGTACTTAAT+TGG + chr1_2:4887074-4887093 Msa0050850:intron 15.0%
!! TATTTGATGAAAAATTCAAT+TGG + chr1_2:4887185-4887204 Msa0050850:CDS 15.0%
!! ATTTGATGAAAAATTCAATT+GGG + chr1_2:4887186-4887205 Msa0050850:CDS 15.0%
!! AATAGAAAAACAAGATATTT+AGG - chr1_2:4888678-4888697 None:intergenic 15.0%
!! TTTAATAATATGATACTCAT+TGG + chr1_2:4889359-4889378 Msa0050850:intron 15.0%
!! TAGATAAATAGAAACTTCAA+TGG - chr1_2:4886687-4886706 None:intergenic 20.0%
!! ATATATTCAAAAGACAATTG+TGG + chr1_2:4886802-4886821 Msa0050850:CDS 20.0%
!! AAACTCTAAATTATTCTAAC+AGG - chr1_2:4887443-4887462 None:intergenic 20.0%
!! TCAAGAAATTTAATGCATTA+AGG + chr1_2:4887531-4887550 Msa0050850:intron 20.0%
!!! ATTTAATGCATTAAGGTTTT+TGG + chr1_2:4887538-4887557 Msa0050850:intron 20.0%
!!! AAGATTTTGGATAAAAAATG+TGG + chr1_2:4887915-4887934 Msa0050850:intron 20.0%
!!! ATTCTATCCAACTTTTTATT+GGG - chr1_2:4888010-4888029 None:intergenic 20.0%
!!! AATTCTATCCAACTTTTTAT+TGG - chr1_2:4888011-4888030 None:intergenic 20.0%
!! AAACATTTAATCTATCTACA+TGG - chr1_2:4888154-4888173 None:intergenic 20.0%
!! ATGTAGATAGATTAAATGTT+TGG + chr1_2:4888153-4888172 Msa0050850:intron 20.0%
!!! CTTTTGTGTTAATTAATATG+AGG + chr1_2:4888272-4888291 Msa0050850:intron 20.0%
!! TGTTAATTAATATGAGGATT+TGG + chr1_2:4888278-4888297 Msa0050850:intron 20.0%
!!! TTTGGTTGATTTAAAAATAG+AGG - chr1_2:4888628-4888647 None:intergenic 20.0%
!! ATTGAAAATAGAACTAGATT+TGG - chr1_2:4888646-4888665 None:intergenic 20.0%
!!! AATAGTTTGAAACAATATGA+TGG + chr1_2:4888915-4888934 Msa0050850:intron 20.0%
!! TTATAAATCATGACACTAAT+TGG - chr1_2:4889090-4889109 None:intergenic 20.0%
!! AAGTACTTTATATCATTCAT+TGG - chr1_2:4889615-4889634 None:intergenic 20.0%
!! TTTCGTACATATATATTCAT+TGG + chr1_2:4889685-4889704 Msa0050850:three_prime_UTR 20.0%
!! TATTCATTGGACAATAATTT+AGG + chr1_2:4889698-4889717 Msa0050850:three_prime_UTR 20.0%
! TTGAAGAGAATATAGAGAAA+TGG + chr1_2:4886775-4886794 Msa0050850:exon 25.0%
!! ATGTTTGAAATTTGATCAGA+TGG + chr1_2:4887111-4887130 Msa0050850:intron 25.0%
! GATCATAAATTAGATATGAC+AGG - chr1_2:4887153-4887172 None:intergenic 25.0%
!! AATGTTTGGTCATTGAATTT+TGG + chr1_2:4888167-4888186 Msa0050850:intron 25.0%
! ATGTAAGTAAACCACTATTA+AGG + chr1_2:4888458-4888477 Msa0050850:intron 25.0%
! TAAGAAAGTGATAGAGTTTA+CGG + chr1_2:4888536-4888555 Msa0050850:intron 25.0%
! TTAGGTATATATCTTATTCC+AGG + chr1_2:4888560-4888579 Msa0050850:intron 25.0%
!!! TGTTGAGCAAGTAATTTTTT+TGG + chr1_2:4888590-4888609 Msa0050850:intron 25.0%
!!! TCATCTGTTAGCTTATTTTA+AGG - chr1_2:4889164-4889183 None:intergenic 25.0%
! CTTCAATATTTACATTTGCT+AGG + chr1_2:4889209-4889228 Msa0050850:CDS 25.0%
! ATTATACCTTGATGAGAAAT+GGG - chr1_2:4889282-4889301 None:intergenic 25.0%
! TATTATACCTTGATGAGAAA+TGG - chr1_2:4889283-4889302 None:intergenic 25.0%
! AAATCATCATCATCCAAAAA+TGG + chr1_2:4889504-4889523 Msa0050850:CDS 25.0%
!! TGATATAAAGTACTTCAAAG+TGG + chr1_2:4889620-4889639 Msa0050850:three_prime_UTR 25.0%
! AAGCAAAATAATGATTGAAG+GGG - chr1_2:4889646-4889665 None:intergenic 25.0%
! CAAGCAAAATAATGATTGAA+GGG - chr1_2:4889647-4889666 None:intergenic 25.0%
! ACAAGCAAAATAATGATTGA+AGG - chr1_2:4889648-4889667 None:intergenic 25.0%
! AATCTGAATGATTTATGGTT+AGG - chr1_2:4889937-4889956 None:intergenic 25.0%
! GACAAAATCTGAATGATTTA+TGG - chr1_2:4889942-4889961 None:intergenic 25.0%
TAAGAGAATATGCTATGCTA+TGG - chr1_2:4886593-4886612 None:intergenic 30.0%
ATTCAAAAGACAATTGTGGT+TGG + chr1_2:4886806-4886825 Msa0050850:CDS 30.0%
! GAGAAATCAAATGAACGTTT+TGG - chr1_2:4886878-4886897 None:intergenic 30.0%
!! TGCAATTTTAGCAGTAACAT+TGG + chr1_2:4886922-4886941 Msa0050850:CDS 30.0%
CTACTTTATCTGTTCAAGAT+TGG + chr1_2:4886945-4886964 Msa0050850:CDS 30.0%
TTCAAATTCTTCTTACAGAC+AGG + chr1_2:4886991-4887010 Msa0050850:CDS 30.0%
!! TAGTTGAAAGTGTTGTGAAT+TGG + chr1_2:4887471-4887490 Msa0050850:intron 30.0%
!! GTGAGTGTTGAAAATATGTA+AGG + chr1_2:4887502-4887521 Msa0050850:intron 30.0%
AGATATCCAACTCATTTATG+TGG + chr1_2:4887570-4887589 Msa0050850:intron 30.0%
AAACAACCACATAAATGAGT+TGG - chr1_2:4887579-4887598 None:intergenic 30.0%
TCAAACTCAGAGGTTAATAA+AGG + chr1_2:4887651-4887670 Msa0050850:intron 30.0%
CAAACTCAGAGGTTAATAAA+GGG + chr1_2:4887652-4887671 Msa0050850:intron 30.0%
AAACTCAGAGGTTAATAAAG+GGG + chr1_2:4887653-4887672 Msa0050850:intron 30.0%
TGTTACACCCAATAAAAAGT+TGG + chr1_2:4888000-4888019 Msa0050850:intron 30.0%
!! AATATGAGGATTTGGTGATA+AGG + chr1_2:4888286-4888305 Msa0050850:intron 30.0%
CTATAAACATATGATCAGTG+TGG + chr1_2:4888322-4888341 Msa0050850:intron 30.0%
TACATCTGCAGTCAAATTAA+GGG - chr1_2:4888443-4888462 None:intergenic 30.0%
TTACATCTGCAGTCAAATTA+AGG - chr1_2:4888444-4888463 None:intergenic 30.0%
ATTTGGTATGTCCTTAATAG+TGG - chr1_2:4888472-4888491 None:intergenic 30.0%
ATTACACATGCAATGTTCTT+TGG - chr1_2:4888511-4888530 None:intergenic 30.0%
CATTTCTTAGCATGTAAGAA+TGG + chr1_2:4888812-4888831 Msa0050850:intron 30.0%
AGTTAGAAGAAGGAAAACTT+TGG + chr1_2:4888837-4888856 Msa0050850:intron 30.0%
ATTGGAAGTTAATGTTACGT+AGG - chr1_2:4889257-4889276 None:intergenic 30.0%
! TTTGGATGATGATGATTTCT+TGG - chr1_2:4889502-4889521 None:intergenic 30.0%
ATTCTACATCAATCAGTGTT+TGG + chr1_2:4889576-4889595 Msa0050850:three_prime_UTR 30.0%
TTCTACATCAATCAGTGTTT+GGG + chr1_2:4889577-4889596 Msa0050850:three_prime_UTR 30.0%
TCATTGGACAATAATTTAGG+AGG + chr1_2:4889701-4889720 Msa0050850:three_prime_UTR 30.0%
ACAATAATTTAGGAGGAGAT+TGG + chr1_2:4889708-4889727 Msa0050850:three_prime_UTR 30.0%
TGATGCGATAACATCATATT+TGG + chr1_2:4889780-4889799 Msa0050850:three_prime_UTR 30.0%
GTGAAAGCAAAATTTGTGAA+TGG - chr1_2:4889993-4890012 None:intergenic 30.0%
!!! TTGTGGTTGGAGTTTTTTCA+TGG + chr1_2:4886819-4886838 Msa0050850:CDS 35.0%
! GTTCATTTGATTTCTCCAAC+AGG + chr1_2:4886882-4886901 Msa0050850:CDS 35.0%
AATTGTAGAGACAATCCTGT+TGG - chr1_2:4886900-4886919 None:intergenic 35.0%
! TAAGAAGAATTTGAAGCCAC+TGG - chr1_2:4886986-4887005 None:intergenic 35.0%
ATTTGATCAGATGGAAGTTC+TGG + chr1_2:4887120-4887139 Msa0050850:intron 35.0%
! CACCATTTAGTAAGCATTGT+GGG + chr1_2:4887220-4887239 Msa0050850:CDS 35.0%
!! TTGAAAGTGTTGTGAATTGG+AGG + chr1_2:4887474-4887493 Msa0050850:intron 35.0%
!!! TGGTTGTTTTTGACTCAATG+TGG + chr1_2:4887590-4887609 Msa0050850:intron 35.0%
!!! GGTTGTTTTTGACTCAATGT+GGG + chr1_2:4887591-4887610 Msa0050850:intron 35.0%
AATGGATGATCTTACGTTTG+AGG + chr1_2:4887806-4887825 Msa0050850:intron 35.0%
ATGGATGATCTTACGTTTGA+GGG + chr1_2:4887807-4887826 Msa0050850:intron 35.0%
ATTGTTGTGTCAAGTGTGAT+TGG + chr1_2:4887834-4887853 Msa0050850:intron 35.0%
TTATTGGGTGTAACAGCTTA+GGG - chr1_2:4887995-4888014 None:intergenic 35.0%
TTTATTGGGTGTAACAGCTT+AGG - chr1_2:4887996-4888015 None:intergenic 35.0%
ACATCTGCAGTCAAATTAAG+GGG - chr1_2:4888442-4888461 None:intergenic 35.0%
AGAACATTGCATGTGTAATC+TGG + chr1_2:4888512-4888531 Msa0050850:intron 35.0%
AGTGATAGAGTTTACGGTTT+AGG + chr1_2:4888542-4888561 Msa0050850:intron 35.0%
! TTTCCTATCTAAAGTACTCG+AGG + chr1_2:4888696-4888715 Msa0050850:intron 35.0%
! TTCCTATCTAAAGTACTCGA+GGG + chr1_2:4888697-4888716 Msa0050850:intron 35.0%
AAGAATGGAGAGTTAGAAGA+AGG + chr1_2:4888827-4888846 Msa0050850:intron 35.0%
AGCTAACAGATGAGTTTGTA+TGG + chr1_2:4889171-4889190 Msa0050850:intron 35.0%
! ACATTTGCTAGGATGATGAT+TGG + chr1_2:4889220-4889239 Msa0050850:CDS 35.0%
AATGTTACGTAGGTGATACA+AGG - chr1_2:4889247-4889266 None:intergenic 35.0%
!! CTTGATGAGAAATGGGTTAT+TGG - chr1_2:4889275-4889294 None:intergenic 35.0%
CAATAACCCATTTCTCATCA+AGG + chr1_2:4889273-4889292 Msa0050850:CDS 35.0%
!! CATTTCACAAGCTTTGAGTT+TGG + chr1_2:4889823-4889842 Msa0050850:three_prime_UTR 35.0%
! CTAATTGACTCTATTCCACT+TGG - chr1_2:4889891-4889910 None:intergenic 35.0%
TGCTATGGTTGCATCTAAGA+GGG - chr1_2:4886578-4886597 None:intergenic 40.0%
ATGCTATGGTTGCATCTAAG+AGG - chr1_2:4886579-4886598 None:intergenic 40.0%
GAAATGTCCAATTTGTCCAG+TGG + chr1_2:4886967-4886986 Msa0050850:CDS 40.0%
! TTTGAAGCCACTGGACAAAT+TGG - chr1_2:4886977-4886996 None:intergenic 40.0%
CCACAATGCTTACTAAATGG+TGG - chr1_2:4887222-4887241 None:intergenic 40.0%
! CCACCATTTAGTAAGCATTG+TGG + chr1_2:4887219-4887238 Msa0050850:CDS 40.0%
GTCCCACAATGCTTACTAAA+TGG - chr1_2:4887225-4887244 None:intergenic 40.0%
! AGCTGGCTTATGCTATCAAA+AGG + chr1_2:4887249-4887268 Msa0050850:CDS 40.0%
GTGTTGTGAATTGGAGGAAA+AGG + chr1_2:4887480-4887499 Msa0050850:intron 40.0%
! ACTCAATGTGGGTGATCTTT+TGG + chr1_2:4887602-4887621 Msa0050850:intron 40.0%
TCTGAGTTTGACACCACATT+TGG - chr1_2:4887642-4887661 None:intergenic 40.0%
! AAATGTGGTGTCAAACTCAG+AGG + chr1_2:4887641-4887660 Msa0050850:intron 40.0%
AGAATTTCGACACAAGGAGT+CGG - chr1_2:4887679-4887698 None:intergenic 40.0%
TCGGAAAGAATTTCGACACA+AGG - chr1_2:4887685-4887704 None:intergenic 40.0%
ATGAAAAAGCTTCCACTCGA+GGG + chr1_2:4887766-4887785 Msa0050850:intron 40.0%
TTGTGTCAAGTGTGATTGGA+TGG + chr1_2:4887838-4887857 Msa0050850:intron 40.0%
AAGCCCATTCTTGCATTTGA+GGG + chr1_2:4888384-4888403 Msa0050850:CDS 40.0%
TCTAAAGGAGCTTGGTTACA+AGG + chr1_2:4888411-4888430 Msa0050850:CDS 40.0%
CTTGCTCAACAAAAATAGCC+TGG - chr1_2:4888581-4888600 None:intergenic 40.0%
AACCCTCGAGTACTTTAGAT+AGG - chr1_2:4888702-4888721 None:intergenic 40.0%
CCTGTAATAGTCGAAGGAAT+TGG - chr1_2:4889404-4889423 None:intergenic 40.0%
CCAATTCCTTCGACTATTAC+AGG + chr1_2:4889401-4889420 Msa0050850:intron 40.0%
CTTCGACTATTACAGGCTAT+GGG + chr1_2:4889408-4889427 Msa0050850:intron 40.0%
ACTATTACAGGCTATGGGAT+TGG + chr1_2:4889413-4889432 Msa0050850:intron 40.0%
CTATTACAGGCTATGGGATT+GGG + chr1_2:4889414-4889433 Msa0050850:intron 40.0%
TTCATCAAGATTCCACCAAG+TGG + chr1_2:4889873-4889892 Msa0050850:three_prime_UTR 40.0%
! ATTGACTCTATTCCACTTGG+TGG - chr1_2:4889888-4889907 None:intergenic 40.0%
GCTATGGTTGCATCTAAGAG+GGG - chr1_2:4886577-4886596 None:intergenic 45.0%
CACCACATTTGGCTAGTGAA+GGG - chr1_2:4887631-4887650 None:intergenic 45.0%
ACACCACATTTGGCTAGTGA+AGG - chr1_2:4887632-4887651 None:intergenic 45.0%
TTCCGACAATAGTGCTCAAG+CGG + chr1_2:4887699-4887718 Msa0050850:intron 45.0%
ACATACACTTGCATTGCCGT+TGG - chr1_2:4887744-4887763 None:intergenic 45.0%
AACGGCAATGCAAGTGTATG+TGG + chr1_2:4887743-4887762 Msa0050850:intron 45.0%
GATGAAAAAGCTTCCACTCG+AGG + chr1_2:4887765-4887784 Msa0050850:intron 45.0%
TGAAAAAGCTTCCACTCGAG+GGG + chr1_2:4887767-4887786 Msa0050850:intron 45.0%
TCCAGTTTAGATGATCCCTC+AGG + chr1_2:4887967-4887986 Msa0050850:intron 45.0%
CAAGCCCATTCTTGCATTTG+AGG + chr1_2:4888383-4888402 Msa0050850:CDS 45.0%
GCTCCCTCAAATGCAAGAAT+GGG - chr1_2:4888390-4888409 None:intergenic 45.0%
AGCTCCCTCAAATGCAAGAA+TGG - chr1_2:4888391-4888410 None:intergenic 45.0%
GCATTTGAGGGAGCTTCTAA+AGG + chr1_2:4888396-4888415 Msa0050850:CDS 45.0%
CCATAGCCTGTAATAGTCGA+AGG - chr1_2:4889410-4889429 None:intergenic 45.0%
CCTTCGACTATTACAGGCTA+TGG + chr1_2:4889407-4889426 Msa0050850:intron 45.0%
TGCAGCTGGTAAGTACATTC+TGG + chr1_2:4889439-4889458 Msa0050850:CDS 45.0%
!!! GGTGTGCTTGATGCCATTTT+TGG - chr1_2:4889520-4889539 None:intergenic 45.0%
!!! TATTTTAAAAATATTCTTTA+TGG + chr1_2:4888234-4888253 Msa0050850:intron 5.0%
!! AATAACTTAATTATAATATA+AGG + chr1_2:4888995-4889014 Msa0050850:intron 5.0%
!! ATAACTTAATTATAATATAA+GGG + chr1_2:4888996-4889015 Msa0050850:intron 5.0%
AGCATTGTGGGACTGATAGC+TGG + chr1_2:4887232-4887251 Msa0050850:CDS 50.0%
CTCCCTTCACTAGCCAAATG+TGG + chr1_2:4887626-4887645 Msa0050850:intron 50.0%
GCTCCATTGAACACGTCCAA+CGG + chr1_2:4887725-4887744 Msa0050850:intron 50.0%
TTGCCGTTGGACGTGTTCAA+TGG - chr1_2:4887731-4887750 None:intergenic 50.0%
GAAAAAGCTTCCACTCGAGG+GGG + chr1_2:4887768-4887787 Msa0050850:intron 50.0%
AAAAAGCTTCCACTCGAGGG+GGG + chr1_2:4887769-4887788 Msa0050850:intron 50.0%
GCCTGAGGGATCATCTAAAC+TGG - chr1_2:4887971-4887990 None:intergenic 50.0%
TAACAGCTTAGGGAGCCTGA+GGG - chr1_2:4887985-4888004 None:intergenic 50.0%
TGATCAGTGTGGCTCAGAGA+TGG + chr1_2:4888333-4888352 Msa0050850:intron 50.0%
!! AGAGATGGTGGGAGCAGTAT+GGG + chr1_2:4888348-4888367 Msa0050850:CDS 50.0%
! AGGGAGCTTCTAAAGGAGCT+TGG + chr1_2:4888403-4888422 Msa0050850:CDS 50.0%
TATGGGATTGGGTTTGCAGC+TGG + chr1_2:4889425-4889444 Msa0050850:CDS 50.0%
ACACCACCAGCATCAAAAGC+AGG + chr1_2:4889535-4889554 Msa0050850:CDS 50.0%
!! TGTCCTGCTTTTGATGCTGG+TGG - chr1_2:4889541-4889560 None:intergenic 50.0%
!! AGCTGTCCTGCTTTTGATGC+TGG - chr1_2:4889544-4889563 None:intergenic 50.0%
CGCCGCTTGAGCACTATTGT+CGG - chr1_2:4887704-4887723 None:intergenic 55.0%
GGGGTGCATAGTCGGATGAA+TGG + chr1_2:4887788-4887807 Msa0050850:intron 55.0%
GTAACAGCTTAGGGAGCCTG+AGG - chr1_2:4887986-4888005 None:intergenic 55.0%
TCAGTGTGGCTCAGAGATGG+TGG + chr1_2:4888336-4888355 Msa0050850:intron 55.0%
CAGTGTGGCTCAGAGATGGT+GGG + chr1_2:4888337-4888356 Msa0050850:intron 55.0%
!! CAGAGATGGTGGGAGCAGTA+TGG + chr1_2:4888347-4888366 Msa0050850:CDS 55.0%
! ACTCGAGGGGGGTGCATAGT+CGG + chr1_2:4887780-4887799 Msa0050850:intron 60.0%
GACTATGCACCCCCCTCGAG+TGG - chr1_2:4887781-4887800 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4886445 4890013 4886445 ID=Msa0050850;Name=Msa0050850
chr1_2 mRNA 4886445 4890013 4886445 ID=Msa0050850-mRNA-1;Parent=Msa0050850;Name=Msa0050850-mRNA-1;_AED=0.15;_eAED=0.15;_QI=236|1|1|1|0.8|0.66|6|444|240
chr1_2 exon 4886445 4886661 4886445 ID=Msa0050850-mRNA-1:exon:1332;Parent=Msa0050850-mRNA-1
chr1_2 exon 4886775 4887012 4886775 ID=Msa0050850-mRNA-1:exon:1333;Parent=Msa0050850-mRNA-1
chr1_2 exon 4887130 4887270 4887130 ID=Msa0050850-mRNA-1:exon:1334;Parent=Msa0050850-mRNA-1
chr1_2 exon 4888340 4888459 4888340 ID=Msa0050850-mRNA-1:exon:1335;Parent=Msa0050850-mRNA-1
chr1_2 exon 4889199 4889294 4889199 ID=Msa0050850-mRNA-1:exon:1336;Parent=Msa0050850-mRNA-1
chr1_2 exon 4889423 4890013 4889423 ID=Msa0050850-mRNA-1:exon:1337;Parent=Msa0050850-mRNA-1
chr1_2 five_prime_UTR 4886445 4886661 4886445 ID=Msa0050850-mRNA-1:five_prime_utr;Parent=Msa0050850-mRNA-1
chr1_2 five_prime_UTR 4886775 4886793 4886775 ID=Msa0050850-mRNA-1:five_prime_utr;Parent=Msa0050850-mRNA-1
chr1_2 CDS 4886794 4887012 4886794 ID=Msa0050850-mRNA-1:cds;Parent=Msa0050850-mRNA-1
chr1_2 CDS 4887130 4887270 4887130 ID=Msa0050850-mRNA-1:cds;Parent=Msa0050850-mRNA-1
chr1_2 CDS 4888340 4888459 4888340 ID=Msa0050850-mRNA-1:cds;Parent=Msa0050850-mRNA-1
chr1_2 CDS 4889199 4889294 4889199 ID=Msa0050850-mRNA-1:cds;Parent=Msa0050850-mRNA-1
chr1_2 CDS 4889423 4889569 4889423 ID=Msa0050850-mRNA-1:cds;Parent=Msa0050850-mRNA-1
chr1_2 three_prime_UTR 4889570 4890013 4889570 ID=Msa0050850-mRNA-1:three_prime_utr;Parent=Msa0050850-mRNA-1
Gene Sequence

>Msa0050850

ATGGAAGAATATATTCAAAAGACAATTGTGGTTGGAGTTTTTTCATGGACAACAACTTTTCTTGTAATGAGAAAAATCTTTCCAAAACGTTCATTTGATTTCTCCAACAGGATTGTCTCTACAATTCATGCAATTTTAGCAGTAACATTGGCTACTTTATCTGTTCAAGATTGGAAATGTCCAATTTGTCCAGTGGCTTCAAATTCTTCTTACAGACAGATGGAAGTTCTGGCAGTGAGCCTGTCATATCTAATTTATGATCTAGTGTGTTGTTTATTTGATGAAAAATTCAATTGGGACAACACTATCCACCATTTAGTAAGCATTGTGGGACTGATAGCTGGCTTATGCTATCAAAAGTGTGGCTCAGAGATGGTGGGAGCAGTATGGGTAACAGAGATGTCAAGCCCATTCTTGCATTTGAGGGAGCTTCTAAAGGAGCTTGGTTACAAGGACACTCCCCTTAATTTGACTGCAGATATTTTATTTGCTTCAATATTTACATTTGCTAGGATGATGATTGGACCTTGTATCACCTACGTAACATTAACTTCCAATAACCCATTTCTCATCAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGTACATTCTGGTTCTTCAAAATTGTAAGAATGATGAGATACAAACTAACCAAGAAATCATCATCATCCAAAAATGGCATCAAGCACACCACCAGCATCAAAAGCAGGACAGCTAGCTAG

Protein sequence

>Msa0050850

MEEYIQKTIVVGVFSWTTTFLVMRKIFPKRSFDFSNRIVSTIHAILAVTLATLSVQDWKCPICPVASNSSYRQMEVLAVSLSYLIYDLVCCLFDEKFNWDNTIHHLVSIVGLIAGLCYQKCGSEMVGAVWVTEMSSPFLHLRELLKELGYKDTPLNLTADILFASIFTFARMMIGPCITYVTLTSNNPFLIKAMGLGLQLVSTFWFFKIVRMMRYKLTKKSSSSKNGIKHTTSIKSRTAS*