AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576150 MtrunA17_Chr8g0393271 73.160 231 3 2 14 201 127 341 3.96e-113 326
Msa0576150 MtrunA17_Chr8g0375761 50.216 231 56 2 14 201 112 326 2.14e-74 227
Msa0576150 MtrunA17_Chr6g0479451 48.052 231 60 3 14 201 118 331 1.31e-67 210
Msa0576150 MtrunA17_Chr8g0375821 45.652 230 66 2 14 200 160 373 1.86e-63 201
Msa0576150 MtrunA17_Chr8g0375781 44.348 230 69 2 14 200 123 336 1.30e-61 194
Msa0576150 MtrunA17_Chr8g0375791 63.218 87 30 1 14 100 123 207 4.32e-32 119
Msa0576150 MtrunA17_Chr8g0375901 41.935 155 72 5 48 200 51 189 1.11e-30 111
Msa0576150 MtrunA17_Chr8g0375921 46.789 109 42 1 92 200 70 162 3.40e-29 106
Msa0576150 MtrunA17_Chr8g0375811 57.353 68 28 1 133 200 7 73 3.92e-20 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576150 AT1G14700.3 50.000 220 50 3 14 189 53 256 2.43e-68 210
Msa0576150 AT1G14700.1 50.000 220 50 3 14 189 149 352 7.70e-68 212
Msa0576150 AT1G25230.2 47.807 228 60 2 13 197 52 263 7.93e-68 209
Msa0576150 AT1G25230.1 47.807 228 60 2 13 197 120 331 2.27e-67 210
Msa0576150 AT1G25230.3 47.807 228 60 2 13 197 143 354 6.69e-67 209
Msa0576150 AT1G14700.2 49.541 218 50 3 16 189 149 350 1.23e-66 209
Msa0576150 AT2G01890.3 48.858 219 53 2 14 189 53 255 5.23e-65 201
Msa0576150 AT2G01890.1 48.858 219 53 2 14 189 120 322 2.07e-64 202
Msa0576150 AT2G01880.1 45.575 226 63 2 14 196 116 324 4.28e-60 191
Msa0576150 AT3G17790.1 43.231 229 69 3 14 197 121 333 5.55e-57 183
Msa0576150 AT2G01890.2 42.009 219 40 3 14 189 120 294 7.87e-46 154
Msa0576150 AT1G14700.4 51.389 144 27 1 14 114 149 292 5.28e-44 148

Find 34 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCATACTTGTGATCCTT+TGG 0.285376 4_1:-80225114 None:intergenic
AAAACCACTCAATTTCATTA+AGG 0.292882 4_1:-80225841 None:intergenic
TTCAAAATATTGATCATAGA+TGG 0.323098 4_1:+80224906 Msa0576150:CDS
CATGTACATATCAACATTGT+TGG 0.378981 4_1:-80225704 None:intergenic
GTTTGATAAATATTTCTTCC+TGG 0.379352 4_1:-80225151 None:intergenic
AATTGCCGAGTTCTTCTTCG+TGG 0.432299 4_1:+80225056 Msa0576150:CDS
CAAAGGATCACAAGTATGAT+TGG 0.454103 4_1:+80225115 Msa0576150:CDS
ATATTTATCAAACCTCTTGA+AGG 0.471888 4_1:+80225161 Msa0576150:CDS
AGAAAGTACTTGTCCACAAA+AGG 0.472357 4_1:-80225087 None:intergenic
TTTGATAAATATTTCTTCCT+GGG 0.475526 4_1:-80225150 None:intergenic
AATGTTGATATGTACATGAA+TGG 0.499703 4_1:+80225709 Msa0576150:CDS
GAATGGGCACGACCACTGCT+TGG 0.505736 4_1:+80225726 Msa0576150:CDS
CAACATCTCCTCTGTAGTCA+TGG 0.506496 4_1:-80224862 None:intergenic
TATCGCATAATGTAACTCCT+TGG 0.517717 4_1:-80226056 None:intergenic
ATTGGAGAGGTGTACTTCCC+AGG 0.523199 4_1:+80225133 Msa0576150:CDS
CAGTTCTTGACTAGTGGTGG+AGG 0.524399 4_1:+80225875 Msa0576150:CDS
AATATCGTAATAGACAACTT+TGG 0.533584 4_1:-80226002 None:intergenic
GACTAGTGGTGGAGGCTCAA+AGG 0.536931 4_1:+80225883 Msa0576150:CDS
ATGTTGATATGTACATGAAT+GGG 0.543838 4_1:+80225710 Msa0576150:CDS
ATCACCTTAATGAAATTGAG+TGG 0.568672 4_1:+80225837 Msa0576150:CDS
GTGGTGGAGGCTCAAAGGCA+TGG 0.574843 4_1:+80225888 Msa0576150:CDS
TACTTATGTGTTCCAAGCAG+TGG 0.576046 4_1:-80225738 None:intergenic
AACACATAAGTAGCACGGAC+AGG 0.579071 4_1:+80225749 Msa0576150:CDS
GCTCAACAGACATAAATCCT+TGG 0.581775 4_1:-80225964 None:intergenic
CACATGCAGTTCTTGACTAG+TGG 0.586138 4_1:+80225869 Msa0576150:CDS
ATGCAGTTCTTGACTAGTGG+TGG 0.590078 4_1:+80225872 Msa0576150:CDS
GAGACTTAACTACCTTCAAG+AGG 0.592693 4_1:-80225173 None:intergenic
GGAGGCTCAAAGGCATGGAA+AGG 0.610802 4_1:+80225893 Msa0576150:CDS
TGTATCCACGAAGAAGAACT+CGG 0.613760 4_1:-80225061 None:intergenic
CAAGTACTTTCTCAAGCCAA+AGG 0.638020 4_1:+80225098 Msa0576150:CDS
CACTAGTCAAGAACTGCATG+TGG 0.640187 4_1:-80225868 None:intergenic
CTTGGAACACATAAGTAGCA+CGG 0.662651 4_1:+80225744 Msa0576150:CDS
GATCACAAGTATGATTGGAG+AGG 0.668923 4_1:+80225120 Msa0576150:CDS
TTGGGCAACCATGACTACAG+AGG 0.718174 4_1:+80224854 Msa0576150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTTCATTTTAAAATGA+GGG - chr4_1:80225680-80225699 None:intergenic 15.0%
!! TATGTTACCTTAATTTAAAT+TGG + chr4_1:80225780-80225799 Msa0576150:intron 15.0%
!!! CAAATTTCATTTTAAAATGA+GGG - chr4_1:80225680-80225699 None:intergenic 15.0%
!! TATGTTACCTTAATTTAAAT+TGG + chr4_1:80225780-80225799 Msa0576150:intron 15.0%
!!! GATCAATATTTTGAAGAAAT+GGG - chr4_1:80224901-80224920 None:intergenic 20.0%
!!! TGATCAATATTTTGAAGAAA+TGG - chr4_1:80224902-80224921 None:intergenic 20.0%
!! TTCAAAATATTGATCATAGA+TGG + chr4_1:80224906-80224925 Msa0576150:CDS 20.0%
!! TGATAAGTTAGAATAATGAA+TGG - chr4_1:80224968-80224987 None:intergenic 20.0%
!! TTTGATAAATATTTCTTCCT+GGG - chr4_1:80225153-80225172 None:intergenic 20.0%
!!! TAGGACAGTATTTTTTAATT+GGG - chr4_1:80225610-80225629 None:intergenic 20.0%
!!! GCAAATTTCATTTTAAAATG+AGG - chr4_1:80225681-80225700 None:intergenic 20.0%
!!! CATTTTAAAATGAAATTTGC+AGG + chr4_1:80225681-80225700 Msa0576150:intron 20.0%
!!! GATCAATATTTTGAAGAAAT+GGG - chr4_1:80224901-80224920 None:intergenic 20.0%
!!! TGATCAATATTTTGAAGAAA+TGG - chr4_1:80224902-80224921 None:intergenic 20.0%
!! TTCAAAATATTGATCATAGA+TGG + chr4_1:80224906-80224925 Msa0576150:CDS 20.0%
!! TGATAAGTTAGAATAATGAA+TGG - chr4_1:80224968-80224987 None:intergenic 20.0%
!! TTTGATAAATATTTCTTCCT+GGG - chr4_1:80225153-80225172 None:intergenic 20.0%
!!! TAGGACAGTATTTTTTAATT+GGG - chr4_1:80225610-80225629 None:intergenic 20.0%
!!! GCAAATTTCATTTTAAAATG+AGG - chr4_1:80225681-80225700 None:intergenic 20.0%
!!! CATTTTAAAATGAAATTTGC+AGG + chr4_1:80225681-80225700 Msa0576150:intron 20.0%
! TGTGAACAAAAAAAGATCTT+TGG - chr4_1:80224937-80224956 None:intergenic 25.0%
! GTTTGATAAATATTTCTTCC+TGG - chr4_1:80225154-80225173 None:intergenic 25.0%
! ATATTTATCAAACCTCTTGA+AGG + chr4_1:80225161-80225180 Msa0576150:CDS 25.0%
! TCTTAATAATTTCTGTGATG+AGG - chr4_1:80225198-80225217 None:intergenic 25.0%
! AACTAGCACTCAAATTAAAA+AGG + chr4_1:80225414-80225433 Msa0576150:intron 25.0%
! ACTAGCACTCAAATTAAAAA+GGG + chr4_1:80225415-80225434 Msa0576150:intron 25.0%
!! TGACTTAAAATTTCCACTTT+TGG + chr4_1:80225546-80225565 Msa0576150:intron 25.0%
!!! GTAGGACAGTATTTTTTAAT+TGG - chr4_1:80225611-80225630 None:intergenic 25.0%
! TCCTACTAGTTATAAAGATA+AGG + chr4_1:80225625-80225644 Msa0576150:intron 25.0%
! ACCTTATCTTTATAACTAGT+AGG - chr4_1:80225629-80225648 None:intergenic 25.0%
! GGATGTTTATCAGTAAATAA+AGG - chr4_1:80225659-80225678 None:intergenic 25.0%
! AATGTTGATATGTACATGAA+TGG + chr4_1:80225709-80225728 Msa0576150:CDS 25.0%
! ATGTTGATATGTACATGAAT+GGG + chr4_1:80225710-80225729 Msa0576150:CDS 25.0%
! AGCAAGTCCAATTTAAATTA+AGG - chr4_1:80225790-80225809 None:intergenic 25.0%
! AAAACCACTCAATTTCATTA+AGG - chr4_1:80225844-80225863 None:intergenic 25.0%
! TTGATAAAAATAGGAGAGAT+GGG + chr4_1:80225921-80225940 Msa0576150:CDS 25.0%
! AATATCGTAATAGACAACTT+TGG - chr4_1:80226005-80226024 None:intergenic 25.0%
!! GTTGTCTATTACGATATTTT+TGG + chr4_1:80226007-80226026 Msa0576150:CDS 25.0%
! TGTGAACAAAAAAAGATCTT+TGG - chr4_1:80224937-80224956 None:intergenic 25.0%
! GTTTGATAAATATTTCTTCC+TGG - chr4_1:80225154-80225173 None:intergenic 25.0%
! ATATTTATCAAACCTCTTGA+AGG + chr4_1:80225161-80225180 Msa0576150:CDS 25.0%
! TCTTAATAATTTCTGTGATG+AGG - chr4_1:80225198-80225217 None:intergenic 25.0%
! AACTAGCACTCAAATTAAAA+AGG + chr4_1:80225414-80225433 Msa0576150:intron 25.0%
! ACTAGCACTCAAATTAAAAA+GGG + chr4_1:80225415-80225434 Msa0576150:intron 25.0%
!! TGACTTAAAATTTCCACTTT+TGG + chr4_1:80225546-80225565 Msa0576150:intron 25.0%
!!! GTAGGACAGTATTTTTTAAT+TGG - chr4_1:80225611-80225630 None:intergenic 25.0%
! TCCTACTAGTTATAAAGATA+AGG + chr4_1:80225625-80225644 Msa0576150:intron 25.0%
! ACCTTATCTTTATAACTAGT+AGG - chr4_1:80225629-80225648 None:intergenic 25.0%
! GGATGTTTATCAGTAAATAA+AGG - chr4_1:80225659-80225678 None:intergenic 25.0%
! AATGTTGATATGTACATGAA+TGG + chr4_1:80225709-80225728 Msa0576150:CDS 25.0%
! ATGTTGATATGTACATGAAT+GGG + chr4_1:80225710-80225729 Msa0576150:CDS 25.0%
! AGCAAGTCCAATTTAAATTA+AGG - chr4_1:80225790-80225809 None:intergenic 25.0%
! AAAACCACTCAATTTCATTA+AGG - chr4_1:80225844-80225863 None:intergenic 25.0%
! TTGATAAAAATAGGAGAGAT+GGG + chr4_1:80225921-80225940 Msa0576150:CDS 25.0%
! AATATCGTAATAGACAACTT+TGG - chr4_1:80226005-80226024 None:intergenic 25.0%
!! GTTGTCTATTACGATATTTT+TGG + chr4_1:80226007-80226026 Msa0576150:CDS 25.0%
!!! AGATCTTTTTTTGTTCACAC+TGG + chr4_1:80224938-80224957 Msa0576150:CDS 30.0%
CATGTACATATCAACATTGT+TGG - chr4_1:80225707-80225726 None:intergenic 30.0%
ATCACCTTAATGAAATTGAG+TGG + chr4_1:80225837-80225856 Msa0576150:CDS 30.0%
! AAGGAGACGTTGATAAAAAT+AGG + chr4_1:80225912-80225931 Msa0576150:CDS 30.0%
! GTTGATAAAAATAGGAGAGA+TGG + chr4_1:80225920-80225939 Msa0576150:CDS 30.0%
TGATAAAAATAGGAGAGATG+GGG + chr4_1:80225922-80225941 Msa0576150:CDS 30.0%
!!! AGATCTTTTTTTGTTCACAC+TGG + chr4_1:80224938-80224957 Msa0576150:CDS 30.0%
CATGTACATATCAACATTGT+TGG - chr4_1:80225707-80225726 None:intergenic 30.0%
ATCACCTTAATGAAATTGAG+TGG + chr4_1:80225837-80225856 Msa0576150:CDS 30.0%
! AAGGAGACGTTGATAAAAAT+AGG + chr4_1:80225912-80225931 Msa0576150:CDS 30.0%
! GTTGATAAAAATAGGAGAGA+TGG + chr4_1:80225920-80225939 Msa0576150:CDS 30.0%
TGATAAAAATAGGAGAGATG+GGG + chr4_1:80225922-80225941 Msa0576150:CDS 30.0%
!!! GATCTGCTTGTTTTAGTGTT+GGG + chr4_1:80224836-80224855 Msa0576150:CDS 35.0%
TGAATGATTATGCGGAGATA+GGG - chr4_1:80225004-80225023 None:intergenic 35.0%
TATCTCCGCATAATCATTCA+CGG + chr4_1:80225004-80225023 Msa0576150:intron 35.0%
AAGAACCGTGAATGATTATG+CGG - chr4_1:80225012-80225031 None:intergenic 35.0%
!! AGAAAGTACTTGTCCACAAA+AGG - chr4_1:80225090-80225109 None:intergenic 35.0%
CAATCATACTTGTGATCCTT+TGG - chr4_1:80225117-80225136 None:intergenic 35.0%
CAAAGGATCACAAGTATGAT+TGG + chr4_1:80225115-80225134 Msa0576150:CDS 35.0%
ATGTGTGTGATTCTAAACGA+AGG + chr4_1:80225247-80225266 Msa0576150:intron 35.0%
TAAGAGATTCAACTTCCAAG+TGG + chr4_1:80225285-80225304 Msa0576150:intron 35.0%
TAATGAGTGACCTCAAGAAT+TGG - chr4_1:80225389-80225408 None:intergenic 35.0%
!! GCATGTTTTGAATCTATCCA+AGG + chr4_1:80226039-80226058 Msa0576150:CDS 35.0%
TATCGCATAATGTAACTCCT+TGG - chr4_1:80226059-80226078 None:intergenic 35.0%
!!! GATCTGCTTGTTTTAGTGTT+GGG + chr4_1:80224836-80224855 Msa0576150:CDS 35.0%
TGAATGATTATGCGGAGATA+GGG - chr4_1:80225004-80225023 None:intergenic 35.0%
TATCTCCGCATAATCATTCA+CGG + chr4_1:80225004-80225023 Msa0576150:intron 35.0%
AAGAACCGTGAATGATTATG+CGG - chr4_1:80225012-80225031 None:intergenic 35.0%
!! AGAAAGTACTTGTCCACAAA+AGG - chr4_1:80225090-80225109 None:intergenic 35.0%
CAATCATACTTGTGATCCTT+TGG - chr4_1:80225117-80225136 None:intergenic 35.0%
CAAAGGATCACAAGTATGAT+TGG + chr4_1:80225115-80225134 Msa0576150:CDS 35.0%
ATGTGTGTGATTCTAAACGA+AGG + chr4_1:80225247-80225266 Msa0576150:intron 35.0%
TAAGAGATTCAACTTCCAAG+TGG + chr4_1:80225285-80225304 Msa0576150:intron 35.0%
TAATGAGTGACCTCAAGAAT+TGG - chr4_1:80225389-80225408 None:intergenic 35.0%
!! GCATGTTTTGAATCTATCCA+AGG + chr4_1:80226039-80226058 Msa0576150:CDS 35.0%
TATCGCATAATGTAACTCCT+TGG - chr4_1:80226059-80226078 None:intergenic 35.0%
!!! CGATCTGCTTGTTTTAGTGT+TGG + chr4_1:80224835-80224854 Msa0576150:CDS 40.0%
GAATGATTATGCGGAGATAG+GGG - chr4_1:80225003-80225022 None:intergenic 40.0%
GTGAATGATTATGCGGAGAT+AGG - chr4_1:80225005-80225024 None:intergenic 40.0%
TGTATCCACGAAGAAGAACT+CGG - chr4_1:80225064-80225083 None:intergenic 40.0%
CAAGTACTTTCTCAAGCCAA+AGG + chr4_1:80225098-80225117 Msa0576150:CDS 40.0%
GATCACAAGTATGATTGGAG+AGG + chr4_1:80225120-80225139 Msa0576150:CDS 40.0%
GAGACTTAACTACCTTCAAG+AGG - chr4_1:80225176-80225195 None:intergenic 40.0%
!! AATCTCTTAGTGCTGTTTCG+AGG - chr4_1:80225274-80225293 None:intergenic 40.0%
TTCCAAGTGGAAGATTGTTG+TGG + chr4_1:80225298-80225317 Msa0576150:intron 40.0%
TCCAAGTGGAAGATTGTTGT+GGG + chr4_1:80225299-80225318 Msa0576150:intron 40.0%
! ATCATCCACTGAGAAGCATA+GGG + chr4_1:80225324-80225343 Msa0576150:intron 40.0%
TACTTATGTGTTCCAAGCAG+TGG - chr4_1:80225741-80225760 None:intergenic 40.0%
CTTGGAACACATAAGTAGCA+CGG + chr4_1:80225744-80225763 Msa0576150:CDS 40.0%
! GGGGTCAAGTTTTACTATGA+CGG + chr4_1:80225941-80225960 Msa0576150:CDS 40.0%
! AAGTTTTACTATGACGGCCA+AGG + chr4_1:80225947-80225966 Msa0576150:CDS 40.0%
GCTCAACAGACATAAATCCT+TGG - chr4_1:80225967-80225986 None:intergenic 40.0%
!!! CGATCTGCTTGTTTTAGTGT+TGG + chr4_1:80224835-80224854 Msa0576150:CDS 40.0%
GAATGATTATGCGGAGATAG+GGG - chr4_1:80225003-80225022 None:intergenic 40.0%
GTGAATGATTATGCGGAGAT+AGG - chr4_1:80225005-80225024 None:intergenic 40.0%
TGTATCCACGAAGAAGAACT+CGG - chr4_1:80225064-80225083 None:intergenic 40.0%
CAAGTACTTTCTCAAGCCAA+AGG + chr4_1:80225098-80225117 Msa0576150:CDS 40.0%
GATCACAAGTATGATTGGAG+AGG + chr4_1:80225120-80225139 Msa0576150:CDS 40.0%
GAGACTTAACTACCTTCAAG+AGG - chr4_1:80225176-80225195 None:intergenic 40.0%
!! AATCTCTTAGTGCTGTTTCG+AGG - chr4_1:80225274-80225293 None:intergenic 40.0%
TTCCAAGTGGAAGATTGTTG+TGG + chr4_1:80225298-80225317 Msa0576150:intron 40.0%
TCCAAGTGGAAGATTGTTGT+GGG + chr4_1:80225299-80225318 Msa0576150:intron 40.0%
! ATCATCCACTGAGAAGCATA+GGG + chr4_1:80225324-80225343 Msa0576150:intron 40.0%
TACTTATGTGTTCCAAGCAG+TGG - chr4_1:80225741-80225760 None:intergenic 40.0%
CTTGGAACACATAAGTAGCA+CGG + chr4_1:80225744-80225763 Msa0576150:CDS 40.0%
! GGGGTCAAGTTTTACTATGA+CGG + chr4_1:80225941-80225960 Msa0576150:CDS 40.0%
! AAGTTTTACTATGACGGCCA+AGG + chr4_1:80225947-80225966 Msa0576150:CDS 40.0%
GCTCAACAGACATAAATCCT+TGG - chr4_1:80225967-80225986 None:intergenic 40.0%
CAACATCTCCTCTGTAGTCA+TGG - chr4_1:80224865-80224884 None:intergenic 45.0%
AATTGCCGAGTTCTTCTTCG+TGG + chr4_1:80225056-80225075 Msa0576150:CDS 45.0%
! CGTGGATACAACTCCTTTTG+TGG + chr4_1:80225074-80225093 Msa0576150:CDS 45.0%
TCCCACAACAATCTTCCACT+TGG - chr4_1:80225303-80225322 None:intergenic 45.0%
! CATCATCCACTGAGAAGCAT+AGG + chr4_1:80225323-80225342 Msa0576150:intron 45.0%
GAGGTGTGTTAAGAGCTCTT+TGG - chr4_1:80225363-80225382 None:intergenic 45.0%
CTGGTTAAGGAAGCCAAAAG+TGG - chr4_1:80225562-80225581 None:intergenic 45.0%
AACACATAAGTAGCACGGAC+AGG + chr4_1:80225749-80225768 Msa0576150:CDS 45.0%
CACTAGTCAAGAACTGCATG+TGG - chr4_1:80225871-80225890 None:intergenic 45.0%
CACATGCAGTTCTTGACTAG+TGG + chr4_1:80225869-80225888 Msa0576150:CDS 45.0%
ATGCAGTTCTTGACTAGTGG+TGG + chr4_1:80225872-80225891 Msa0576150:CDS 45.0%
CAACATCTCCTCTGTAGTCA+TGG - chr4_1:80224865-80224884 None:intergenic 45.0%
AATTGCCGAGTTCTTCTTCG+TGG + chr4_1:80225056-80225075 Msa0576150:CDS 45.0%
! CGTGGATACAACTCCTTTTG+TGG + chr4_1:80225074-80225093 Msa0576150:CDS 45.0%
TCCCACAACAATCTTCCACT+TGG - chr4_1:80225303-80225322 None:intergenic 45.0%
! CATCATCCACTGAGAAGCAT+AGG + chr4_1:80225323-80225342 Msa0576150:intron 45.0%
GAGGTGTGTTAAGAGCTCTT+TGG - chr4_1:80225363-80225382 None:intergenic 45.0%
CTGGTTAAGGAAGCCAAAAG+TGG - chr4_1:80225562-80225581 None:intergenic 45.0%
AACACATAAGTAGCACGGAC+AGG + chr4_1:80225749-80225768 Msa0576150:CDS 45.0%
CACTAGTCAAGAACTGCATG+TGG - chr4_1:80225871-80225890 None:intergenic 45.0%
CACATGCAGTTCTTGACTAG+TGG + chr4_1:80225869-80225888 Msa0576150:CDS 45.0%
ATGCAGTTCTTGACTAGTGG+TGG + chr4_1:80225872-80225891 Msa0576150:CDS 45.0%
TTGGGCAACCATGACTACAG+AGG + chr4_1:80224854-80224873 Msa0576150:CDS 50.0%
! ATTGGAGAGGTGTACTTCCC+AGG + chr4_1:80225133-80225152 Msa0576150:CDS 50.0%
ACACCTCCTGCCAATTCTTG+AGG + chr4_1:80225376-80225395 Msa0576150:intron 50.0%
TGACCTCAAGAATTGGCAGG+AGG - chr4_1:80225382-80225401 None:intergenic 50.0%
GAGTGACCTCAAGAATTGGC+AGG - chr4_1:80225385-80225404 None:intergenic 50.0%
GAAATGTTAACCAGTGCCCC+CGG + chr4_1:80225437-80225456 Msa0576150:intron 50.0%
AAATGTTAACCAGTGCCCCC+GGG + chr4_1:80225438-80225457 Msa0576150:intron 50.0%
TAACTCCTTAACCAGTGCCC+CGG - chr4_1:80225459-80225478 None:intergenic 50.0%
CATAAGTAGCACGGACAGGT+AGG + chr4_1:80225753-80225772 Msa0576150:intron 50.0%
CAGTTCTTGACTAGTGGTGG+AGG + chr4_1:80225875-80225894 Msa0576150:CDS 50.0%
TTGGGCAACCATGACTACAG+AGG + chr4_1:80224854-80224873 Msa0576150:CDS 50.0%
! ATTGGAGAGGTGTACTTCCC+AGG + chr4_1:80225133-80225152 Msa0576150:CDS 50.0%
ACACCTCCTGCCAATTCTTG+AGG + chr4_1:80225376-80225395 Msa0576150:intron 50.0%
TGACCTCAAGAATTGGCAGG+AGG - chr4_1:80225382-80225401 None:intergenic 50.0%
GAGTGACCTCAAGAATTGGC+AGG - chr4_1:80225385-80225404 None:intergenic 50.0%
GAAATGTTAACCAGTGCCCC+CGG + chr4_1:80225437-80225456 Msa0576150:intron 50.0%
AAATGTTAACCAGTGCCCCC+GGG + chr4_1:80225438-80225457 Msa0576150:intron 50.0%
TAACTCCTTAACCAGTGCCC+CGG - chr4_1:80225459-80225478 None:intergenic 50.0%
CATAAGTAGCACGGACAGGT+AGG + chr4_1:80225753-80225772 Msa0576150:intron 50.0%
CAGTTCTTGACTAGTGGTGG+AGG + chr4_1:80225875-80225894 Msa0576150:CDS 50.0%
TGGTGCCCTATGCTTCTCAG+TGG - chr4_1:80225332-80225351 None:intergenic 55.0%
! CTGAGAAGCATAGGGCACCA+TGG + chr4_1:80225332-80225351 Msa0576150:intron 55.0%
!! AGAGCTCTTTGGTGTCGCCA+TGG - chr4_1:80225352-80225371 None:intergenic 55.0%
AATGTTAACCAGTGCCCCCG+GGG + chr4_1:80225439-80225458 Msa0576150:intron 55.0%
AACTCCTTAACCAGTGCCCC+GGG - chr4_1:80225458-80225477 None:intergenic 55.0%
TCATGTTAACCAGTGCCCCG+GGG - chr4_1:80225587-80225606 None:intergenic 55.0%
GTCATGTTAACCAGTGCCCC+GGG - chr4_1:80225588-80225607 None:intergenic 55.0%
GGTCATGTTAACCAGTGCCC+CGG - chr4_1:80225589-80225608 None:intergenic 55.0%
! GACTAGTGGTGGAGGCTCAA+AGG + chr4_1:80225883-80225902 Msa0576150:CDS 55.0%
! GGAGGCTCAAAGGCATGGAA+AGG + chr4_1:80225893-80225912 Msa0576150:CDS 55.0%
TGGTGCCCTATGCTTCTCAG+TGG - chr4_1:80225332-80225351 None:intergenic 55.0%
! CTGAGAAGCATAGGGCACCA+TGG + chr4_1:80225332-80225351 Msa0576150:intron 55.0%
!! AGAGCTCTTTGGTGTCGCCA+TGG - chr4_1:80225352-80225371 None:intergenic 55.0%
AATGTTAACCAGTGCCCCCG+GGG + chr4_1:80225439-80225458 Msa0576150:intron 55.0%
AACTCCTTAACCAGTGCCCC+GGG - chr4_1:80225458-80225477 None:intergenic 55.0%
TCATGTTAACCAGTGCCCCG+GGG - chr4_1:80225587-80225606 None:intergenic 55.0%
GTCATGTTAACCAGTGCCCC+GGG - chr4_1:80225588-80225607 None:intergenic 55.0%
GGTCATGTTAACCAGTGCCC+CGG - chr4_1:80225589-80225608 None:intergenic 55.0%
! GACTAGTGGTGGAGGCTCAA+AGG + chr4_1:80225883-80225902 Msa0576150:CDS 55.0%
! GGAGGCTCAAAGGCATGGAA+AGG + chr4_1:80225893-80225912 Msa0576150:CDS 55.0%
ACTCCTTAACCAGTGCCCCG+GGG - chr4_1:80225457-80225476 None:intergenic 60.0%
GGCTTCCTTAACCAGTGCCC+CGG + chr4_1:80225567-80225586 Msa0576150:intron 60.0%
GCTTCCTTAACCAGTGCCCC+GGG + chr4_1:80225568-80225587 Msa0576150:intron 60.0%
CTTCCTTAACCAGTGCCCCG+GGG + chr4_1:80225569-80225588 Msa0576150:intron 60.0%
GAATGGGCACGACCACTGCT+TGG + chr4_1:80225726-80225745 Msa0576150:CDS 60.0%
! GTGGTGGAGGCTCAAAGGCA+TGG + chr4_1:80225888-80225907 Msa0576150:CDS 60.0%
ACTCCTTAACCAGTGCCCCG+GGG - chr4_1:80225457-80225476 None:intergenic 60.0%
GGCTTCCTTAACCAGTGCCC+CGG + chr4_1:80225567-80225586 Msa0576150:intron 60.0%
GCTTCCTTAACCAGTGCCCC+GGG + chr4_1:80225568-80225587 Msa0576150:intron 60.0%
CTTCCTTAACCAGTGCCCCG+GGG + chr4_1:80225569-80225588 Msa0576150:intron 60.0%
GAATGGGCACGACCACTGCT+TGG + chr4_1:80225726-80225745 Msa0576150:CDS 60.0%
! GTGGTGGAGGCTCAAAGGCA+TGG + chr4_1:80225888-80225907 Msa0576150:CDS 60.0%
CTCCTTAACCAGTGCCCCGG+GGG - chr4_1:80225456-80225475 None:intergenic 65.0%
CTCCTTAACCAGTGCCCCGG+GGG - chr4_1:80225456-80225475 None:intergenic 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + chr4_1:80225451-80225470 Msa0576150:intron 70.0%
!! GTGCCCCGGGGCACTGGTTA+AGG - chr4_1:80225581-80225600 None:intergenic 70.0%
TAACCAGTGCCCCGGGGCAC+TGG + chr4_1:80225575-80225594 Msa0576150:intron 70.0%
TAACCAGTGCCCCGGGGCAC+TGG - chr4_1:80225575-80225594 None:intergenic 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + chr4_1:80225451-80225470 Msa0576150:intron 70.0%
!! GTGCCCCGGGGCACTGGTTA+AGG - chr4_1:80225581-80225600 None:intergenic 70.0%
TAACCAGTGCCCCGGGGCAC+TGG + chr4_1:80225575-80225594 Msa0576150:intron 70.0%
TAACCAGTGCCCCGGGGCAC+TGG - chr4_1:80225575-80225594 None:intergenic 70.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr4_1:80225445-80225464 Msa0576150:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr4_1:80225450-80225469 None:intergenic 75.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr4_1:80225445-80225464 Msa0576150:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr4_1:80225450-80225469 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80224812 80226081 80224812 ID=Msa0576150;Name=Msa0576150
chr4_1 mRNA 80224812 80226081 80224812 ID=Msa0576150-mRNA-1;Parent=Msa0576150;Name=Msa0576150-mRNA-1;_AED=0.13;_eAED=0.15;_QI=0|0|0|1|1|1|4|0|201
chr4_1 exon 80224812 80224959 80224812 ID=Msa0576150-mRNA-1:exon:28637;Parent=Msa0576150-mRNA-1
chr4_1 exon 80225055 80225182 80225055 ID=Msa0576150-mRNA-1:exon:28638;Parent=Msa0576150-mRNA-1
chr4_1 exon 80225703 80225770 80225703 ID=Msa0576150-mRNA-1:exon:28639;Parent=Msa0576150-mRNA-1
chr4_1 exon 80225820 80226081 80225820 ID=Msa0576150-mRNA-1:exon:28640;Parent=Msa0576150-mRNA-1
chr4_1 CDS 80224812 80224959 80224812 ID=Msa0576150-mRNA-1:cds;Parent=Msa0576150-mRNA-1
chr4_1 CDS 80225055 80225182 80225055 ID=Msa0576150-mRNA-1:cds;Parent=Msa0576150-mRNA-1
chr4_1 CDS 80225703 80225770 80225703 ID=Msa0576150-mRNA-1:cds;Parent=Msa0576150-mRNA-1
chr4_1 CDS 80225820 80226081 80225820 ID=Msa0576150-mRNA-1:cds;Parent=Msa0576150-mRNA-1
Gene Sequence

>Msa0576150

ATGTCTCTAATAATTAATGTGATCGATCTGCTTGTTTTAGTGTTGGGCAACCATGACTACAGAGGAGATGTTGAAGCTCAATTAAGCCCATTTCTTCAAAATATTGATCATAGATGGTTTTGCCAAAGATCTTTTTTTGTTCACACTGAAATTGCCGAGTTCTTCTTCGTGGATACAACTCCTTTTGTGGACAAGTACTTTCTCAAGCCAAAGGATCACAAGTATGATTGGAGAGGTGTACTTCCCAGGAAGAAATATTTATCAAACCTCTTGAAGGCCAACAATGTTGATATGTACATGAATGGGCACGACCACTGCTTGGAACACATAAGTAGCACGGACAGTTTACTGAATCATCAATATCACCTTAATGAAATTGAGTGGTTTTGCAGCCACATGCAGTTCTTGACTAGTGGTGGAGGCTCAAAGGCATGGAAAGGAGACGTTGATAAAAATAGGAGAGATGGGGTCAAGTTTTACTATGACGGCCAAGGATTTATGTCTGTTGAGCTTGAGCAAATGAATGCCAAAGTTGTCTATTACGATATTTTTGGCAATGTTTTGCATGTTTTGAATCTATCCAAGGAGTTACATTATGCGATATAA

Protein sequence

>Msa0576150

MSLIINVIDLLVLVLGNHDYRGDVEAQLSPFLQNIDHRWFCQRSFFVHTEIAEFFFVDTTPFVDKYFLKPKDHKYDWRGVLPRKKYLSNLLKANNVDMYMNGHDHCLEHISSTDSLLNHQYHLNEIEWFCSHMQFLTSGGGSKAWKGDVDKNRRDGVKFYYDGQGFMSVELEQMNAKVVYYDIFGNVLHVLNLSKELHYAI*