AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1227090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1227090 MtrunA17_Chr1g0155591 96.667 240 8 0 1 240 1 240 5.68e-177 485
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1227090 AT1G35180.1 62.996 227 82 1 2 226 3 229 3.12e-110 317
Msa1227090 AT1G35170.1 63.033 211 76 1 16 226 19 227 1.85e-100 291
Msa1227090 AT1G45010.1 62.115 227 84 1 2 226 3 229 3.78e-100 291
Msa1227090 AT1G35170.4 62.431 181 68 0 16 196 19 199 6.08e-85 252
Msa1227090 AT1G45010.3 60.622 193 74 1 2 192 3 195 1.01e-81 244
Msa1227090 AT1G45010.2 64.706 153 54 0 74 226 1 153 7.80e-73 219
Msa1227090 AT1G35170.2 65.753 146 50 0 16 161 19 164 9.77e-72 217
Msa1227090 AT1G35170.3 65.753 146 50 0 16 161 19 164 9.77e-72 217
Msa1227090 AT1G45010.4 62.346 162 59 1 2 161 3 164 9.98e-69 209

Find 75 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAAAATCTGAATGATTTA+TGG 0.119660 8_2:+2179876 None:intergenic
TTACATCTGCAGTCAAATTA+AGG 0.189859 8_2:+2181374 None:intergenic
TATTCATTGGACAATAATTT+AGG 0.228489 8_2:-2180117 Msa1227090:three_prime_UTR
TGATGCGATAACATCATATT+TGG 0.229936 8_2:-2180035 Msa1227090:three_prime_UTR
CTTGATGAGAAATGGGTTAT+TGG 0.254552 8_2:+2180543 None:intergenic
CTTTATTATACAATTATATA+TGG 0.267432 8_2:+2183175 None:intergenic
TTTGAAGCCACTGGACAAAT+TGG 0.271253 8_2:+2182841 None:intergenic
GAGAAATCAAATGAACGTTT+TGG 0.301030 8_2:+2182940 None:intergenic
TTTGGATGATGATGATTTCT+TGG 0.316280 8_2:+2180316 None:intergenic
GTCCCACAATGCTTACTAAA+TGG 0.321372 8_2:+2182593 None:intergenic
ATTTCATAGCTATATTTATA+CGG 0.323646 8_2:-2183372 Msa1227090:five_prime_UTR
CTACTTTATCTGTTCAAGAT+TGG 0.324800 8_2:-2182870 Msa1227090:CDS
ATTCTACATCAATCAGTGTT+TGG 0.326066 8_2:-2180239 Msa1227090:three_prime_UTR
TATTATACCTTGATGAGAAA+TGG 0.337195 8_2:+2180535 None:intergenic
ATTTGATCAGATGGAAGTTC+TGG 0.337359 8_2:-2182695 Msa1227090:intron
CAGAGATGGTGGGAGCAGTA+TGG 0.350230 8_2:-2181468 Msa1227090:CDS
TTTCGTACATATATATTCAT+TGG 0.352894 8_2:-2180130 Msa1227090:three_prime_UTR
TGCAGCTGGTAAGTACATTC+TGG 0.354832 8_2:-2180376 Msa1227090:CDS
CTATTACAGGCTATGGGATT+GGG 0.373800 8_2:-2180401 Msa1227090:intron
CATTTCACAAGCTTTGAGTT+TGG 0.374521 8_2:-2179992 Msa1227090:three_prime_UTR
TTCTACATCAATCAGTGTTT+GGG 0.376016 8_2:-2180238 Msa1227090:three_prime_UTR
TTGAAGAGAATATAGAGAAA+TGG 0.376482 8_2:-2183040 Msa1227090:exon
AATCTGAATGATTTATGGTT+AGG 0.380485 8_2:+2179881 None:intergenic
ACAATAATTTAGGAGGAGAT+TGG 0.391152 8_2:-2180107 Msa1227090:three_prime_UTR
ACATTTGCTAGGATGATGAT+TGG 0.391517 8_2:-2180595 Msa1227090:CDS
TACATCTGCAGTCAAATTAA+GGG 0.403745 8_2:+2181375 None:intergenic
AAGTACTTTATATCATTCAT+TGG 0.414126 8_2:+2180203 None:intergenic
ATTATACCTTGATGAGAAAT+GGG 0.416729 8_2:+2180536 None:intergenic
AGCTCCCTCAAATGCAAGAA+TGG 0.423674 8_2:+2181427 None:intergenic
ACTATTACAGGCTATGGGAT+TGG 0.428555 8_2:-2180402 Msa1227090:intron
TTCAAATTCTTCTTACAGAC+AGG 0.438036 8_2:-2182824 Msa1227090:intron
CAAGCCCATTCTTGCATTTG+AGG 0.445389 8_2:-2181432 Msa1227090:CDS
TCTAAAGGAGCTTGGTTACA+AGG 0.454047 8_2:-2181404 Msa1227090:CDS
GTTCATTTGATTTCTCCAAC+AGG 0.463083 8_2:-2182933 Msa1227090:CDS
GCATTTGAGGGAGCTTCTAA+AGG 0.464317 8_2:-2181419 Msa1227090:CDS
AAGCCCATTCTTGCATTTGA+GGG 0.465855 8_2:-2181431 Msa1227090:CDS
CACCATTTAGTAAGCATTGT+GGG 0.466117 8_2:-2182595 Msa1227090:CDS
CAATAACCCATTTCTCATCA+AGG 0.469006 8_2:-2180542 Msa1227090:intron
TATGGGATTGGGTTTGCAGC+TGG 0.477409 8_2:-2180390 Msa1227090:CDS
AGCATTGTGGGACTGATAGC+TGG 0.478228 8_2:-2182583 Msa1227090:CDS
GCTCCCTCAAATGCAAGAAT+GGG 0.481370 8_2:+2181428 None:intergenic
ACACCACCAGCATCAAAAGC+AGG 0.487485 8_2:-2180280 Msa1227090:CDS
CTTCGACTATTACAGGCTAT+GGG 0.490448 8_2:-2180407 Msa1227090:intron
ATGCTATGGTTGCATCTAAG+AGG 0.491529 8_2:+2183239 None:intergenic
AGGGAGCTTCTAAAGGAGCT+TGG 0.499104 8_2:-2181412 Msa1227090:CDS
ATTGACTCTATTCCACTTGG+TGG 0.502846 8_2:+2179930 None:intergenic
TAAGAAGAATTTGAAGCCAC+TGG 0.506715 8_2:+2182832 None:intergenic
ACAAGCAAAATAATGATTGA+AGG 0.508742 8_2:+2180170 None:intergenic
AGCTGGCTTATGCTATCAAA+AGG 0.510458 8_2:-2182566 Msa1227090:intron
CTTCAATATTTACATTTGCT+AGG 0.511008 8_2:-2180606 Msa1227090:CDS
AGAGATGGTGGGAGCAGTAT+GGG 0.512111 8_2:-2181467 Msa1227090:CDS
GTGAAAGCAAAATTTGTGAA+TGG 0.514429 8_2:+2179825 None:intergenic
TAAGAGAATATGCTATGCTA+TGG 0.517220 8_2:+2183225 None:intergenic
ATTCAAAAGACAATTGTGGT+TGG 0.543048 8_2:-2183009 Msa1227090:CDS
CTAATTGACTCTATTCCACT+TGG 0.545263 8_2:+2179927 None:intergenic
GATCATAAATTAGATATGAC+AGG 0.545515 8_2:+2182665 None:intergenic
TCATTGGACAATAATTTAGG+AGG 0.547156 8_2:-2180114 Msa1227090:three_prime_UTR
TATTATACAATTATATATGG+TGG 0.549398 8_2:+2183178 None:intergenic
CAAGCAAAATAATGATTGAA+GGG 0.550272 8_2:+2180171 None:intergenic
TGCTATGGTTGCATCTAAGA+GGG 0.555572 8_2:+2183240 None:intergenic
ATTGGAAGTTAATGTTACGT+AGG 0.557867 8_2:+2180561 None:intergenic
AATTGTAGAGACAATCCTGT+TGG 0.571539 8_2:+2182918 None:intergenic
TTCATCAAGATTCCACCAAG+TGG 0.577786 8_2:-2179942 Msa1227090:three_prime_UTR
GAAATGTCCAATTTGTCCAG+TGG 0.588096 8_2:-2182848 Msa1227090:CDS
CCACAATGCTTACTAAATGG+TGG 0.601229 8_2:+2182596 None:intergenic
CCACCATTTAGTAAGCATTG+TGG 0.612304 8_2:-2182596 Msa1227090:CDS
AATGTTACGTAGGTGATACA+AGG 0.616770 8_2:+2180571 None:intergenic
ATATATTCAAAAGACAATTG+TGG 0.625016 8_2:-2183013 Msa1227090:CDS
ACATCTGCAGTCAAATTAAG+GGG 0.627723 8_2:+2181376 None:intergenic
TGATATAAAGTACTTCAAAG+TGG 0.630502 8_2:-2180195 Msa1227090:three_prime_UTR
AAGCAAAATAATGATTGAAG+GGG 0.632171 8_2:+2180172 None:intergenic
TCAGTGTGGCTCAGAGATGG+TGG 0.640532 8_2:-2181479 Msa1227090:intron
CAGTGTGGCTCAGAGATGGT+GGG 0.652161 8_2:-2181478 Msa1227090:CDS
TGATCAGTGTGGCTCAGAGA+TGG 0.653705 8_2:-2181482 Msa1227090:intron
GCTATGGTTGCATCTAAGAG+GGG 0.683081 8_2:+2183241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATTTTTTAAAAATTT+TGG + chr8_2:2182417-2182436 None:intergenic 0.0%
!! CTTTATTATACAATTATATA+TGG + chr8_2:2180022-2180041 None:intergenic 10.0%
!!! AATCTAATATTTTAAGATTT+TGG - chr8_2:2181281-2181300 Msa1227090:intron 10.0%
!! TTAAAATAAAATATGCAAAT+TGG + chr8_2:2181601-2181620 None:intergenic 10.0%
!! GTACAAAATAAATAAATATT+TGG + chr8_2:2181868-2181887 None:intergenic 10.0%
!!! GTTTAAAATATAAAAACTAA+GGG + chr8_2:2182703-2182722 None:intergenic 10.0%
!!! TGTTTAAAATATAAAAACTA+AGG + chr8_2:2182704-2182723 None:intergenic 10.0%
!! TATTATACAATTATATATGG+TGG + chr8_2:2180019-2180038 None:intergenic 15.0%
!! ATATATCATTTGTACTTAAT+TGG - chr8_2:2180453-2180472 Msa1227090:intron 15.0%
!! TATTTGATGAAAAATTCAAT+TGG - chr8_2:2180564-2180583 Msa1227090:CDS 15.0%
!! ATTTGATGAAAAATTCAATT+GGG - chr8_2:2180565-2180584 Msa1227090:CDS 15.0%
!! AATAGAAAAACAAGATATTT+AGG + chr8_2:2182057-2182076 None:intergenic 15.0%
!! TTTAATAATATGATACTCAT+TGG - chr8_2:2182738-2182757 Msa1227090:intron 15.0%
!! TAGATAAATAGAAACTTCAA+TGG + chr8_2:2180066-2180085 None:intergenic 20.0%
!! ATATATTCAAAAGACAATTG+TGG - chr8_2:2180181-2180200 Msa1227090:three_prime_UTR 20.0%
!! AAACTCTAAATTATTCTAAC+AGG + chr8_2:2180822-2180841 None:intergenic 20.0%
!! TCAAGAAATTTAATGCATTA+AGG - chr8_2:2180910-2180929 Msa1227090:intron 20.0%
!!! ATTTAATGCATTAAGGTTTT+TGG - chr8_2:2180917-2180936 Msa1227090:intron 20.0%
!!! AAGATTTTGGATAAAAAATG+TGG - chr8_2:2181294-2181313 Msa1227090:intron 20.0%
!!! ATTCTATCCAACTTTTTATT+GGG + chr8_2:2181389-2181408 None:intergenic 20.0%
!!! AATTCTATCCAACTTTTTAT+TGG + chr8_2:2181390-2181409 None:intergenic 20.0%
!! AAACATTTAATCTATCTACA+TGG + chr8_2:2181533-2181552 None:intergenic 20.0%
!! ATGTAGATAGATTAAATGTT+TGG - chr8_2:2181532-2181551 Msa1227090:intron 20.0%
!!! CTTTTGTGTTAATTAATATG+AGG - chr8_2:2181651-2181670 Msa1227090:intron 20.0%
!! TGTTAATTAATATGAGGATT+TGG - chr8_2:2181657-2181676 Msa1227090:intron 20.0%
!!! TTTGGTTGATTTAAAAATAG+AGG + chr8_2:2182007-2182026 None:intergenic 20.0%
!! ATTGAAAATAGAACTAGATT+TGG + chr8_2:2182025-2182044 None:intergenic 20.0%
!!! AATAGTTTGAAACAATATGA+TGG - chr8_2:2182294-2182313 Msa1227090:intron 20.0%
!! TTATAAATCATGACACTAAT+TGG + chr8_2:2182469-2182488 None:intergenic 20.0%
!! AAGTACTTTATATCATTCAT+TGG + chr8_2:2182994-2183013 None:intergenic 20.0%
!! TTTCGTACATATATATTCAT+TGG - chr8_2:2183064-2183083 Msa1227090:intron 20.0%
!! TATTCATTGGACAATAATTT+AGG - chr8_2:2183077-2183096 Msa1227090:intron 20.0%
! TTGAAGAGAATATAGAGAAA+TGG - chr8_2:2180154-2180173 Msa1227090:three_prime_UTR 25.0%
!! ATGTTTGAAATTTGATCAGA+TGG - chr8_2:2180490-2180509 Msa1227090:intron 25.0%
! GATCATAAATTAGATATGAC+AGG + chr8_2:2180532-2180551 None:intergenic 25.0%
!! AATGTTTGGTCATTGAATTT+TGG - chr8_2:2181546-2181565 Msa1227090:intron 25.0%
! ATGTAAGTAAACCACTATTA+AGG - chr8_2:2181837-2181856 Msa1227090:intron 25.0%
! TAAGAAAGTGATAGAGTTTA+CGG - chr8_2:2181915-2181934 Msa1227090:intron 25.0%
! TTAGGTATATATCTTATTCC+AGG - chr8_2:2181939-2181958 Msa1227090:intron 25.0%
!!! TGTTGAGCAAGTAATTTTTT+TGG - chr8_2:2181969-2181988 Msa1227090:intron 25.0%
!!! TCATCTGTTAGCTTATTTTA+AGG + chr8_2:2182543-2182562 None:intergenic 25.0%
! CTTCAATATTTACATTTGCT+AGG - chr8_2:2182588-2182607 Msa1227090:CDS 25.0%
! ATTATACCTTGATGAGAAAT+GGG + chr8_2:2182661-2182680 None:intergenic 25.0%
! TATTATACCTTGATGAGAAA+TGG + chr8_2:2182662-2182681 None:intergenic 25.0%
! AAATCATCATCATCCAAAAA+TGG - chr8_2:2182883-2182902 Msa1227090:CDS 25.0%
!! TGATATAAAGTACTTCAAAG+TGG - chr8_2:2182999-2183018 Msa1227090:CDS 25.0%
! AAGCAAAATAATGATTGAAG+GGG + chr8_2:2183025-2183044 None:intergenic 25.0%
! CAAGCAAAATAATGATTGAA+GGG + chr8_2:2183026-2183045 None:intergenic 25.0%
! ACAAGCAAAATAATGATTGA+AGG + chr8_2:2183027-2183046 None:intergenic 25.0%
! AATCTGAATGATTTATGGTT+AGG + chr8_2:2183316-2183335 None:intergenic 25.0%
! GACAAAATCTGAATGATTTA+TGG + chr8_2:2183321-2183340 None:intergenic 25.0%
TAAGAGAATATGCTATGCTA+TGG + chr8_2:2179972-2179991 None:intergenic 30.0%
ATTCAAAAGACAATTGTGGT+TGG - chr8_2:2180185-2180204 Msa1227090:three_prime_UTR 30.0%
! GAGAAATCAAATGAACGTTT+TGG + chr8_2:2180257-2180276 None:intergenic 30.0%
!! TGCAATTTTAGCAGTAACAT+TGG - chr8_2:2180301-2180320 Msa1227090:CDS 30.0%
CTACTTTATCTGTTCAAGAT+TGG - chr8_2:2180324-2180343 Msa1227090:CDS 30.0%
TTCAAATTCTTCTTACAGAC+AGG - chr8_2:2180370-2180389 Msa1227090:CDS 30.0%
!! TAGTTGAAAGTGTTGTGAAT+TGG - chr8_2:2180850-2180869 Msa1227090:intron 30.0%
!! GTGAGTGTTGAAAATATGTA+AGG - chr8_2:2180881-2180900 Msa1227090:intron 30.0%
AGATATCCAACTCATTTATG+TGG - chr8_2:2180949-2180968 Msa1227090:intron 30.0%
AAACAACCACATAAATGAGT+TGG + chr8_2:2180958-2180977 None:intergenic 30.0%
TCAAACTCAGAGGTTAATAA+AGG - chr8_2:2181030-2181049 Msa1227090:intron 30.0%
CAAACTCAGAGGTTAATAAA+GGG - chr8_2:2181031-2181050 Msa1227090:intron 30.0%
AAACTCAGAGGTTAATAAAG+GGG - chr8_2:2181032-2181051 Msa1227090:intron 30.0%
TGTTACACCCAATAAAAAGT+TGG - chr8_2:2181379-2181398 Msa1227090:CDS 30.0%
!! AATATGAGGATTTGGTGATA+AGG - chr8_2:2181665-2181684 Msa1227090:intron 30.0%
CTATAAACATATGATCAGTG+TGG - chr8_2:2181701-2181720 Msa1227090:intron 30.0%
TACATCTGCAGTCAAATTAA+GGG + chr8_2:2181822-2181841 None:intergenic 30.0%
TTACATCTGCAGTCAAATTA+AGG + chr8_2:2181823-2181842 None:intergenic 30.0%
ATTTGGTATGTCCTTAATAG+TGG + chr8_2:2181851-2181870 None:intergenic 30.0%
ATTACACATGCAATGTTCTT+TGG + chr8_2:2181890-2181909 None:intergenic 30.0%
CATTTCTTAGCATGTAAGAA+TGG - chr8_2:2182191-2182210 Msa1227090:intron 30.0%
AGTTAGAAGAAGGAAAACTT+TGG - chr8_2:2182216-2182235 Msa1227090:intron 30.0%
ATTGGAAGTTAATGTTACGT+AGG + chr8_2:2182636-2182655 None:intergenic 30.0%
! TTTGGATGATGATGATTTCT+TGG + chr8_2:2182881-2182900 None:intergenic 30.0%
ATTCTACATCAATCAGTGTT+TGG - chr8_2:2182955-2182974 Msa1227090:CDS 30.0%
TTCTACATCAATCAGTGTTT+GGG - chr8_2:2182956-2182975 Msa1227090:CDS 30.0%
TCATTGGACAATAATTTAGG+AGG - chr8_2:2183080-2183099 Msa1227090:intron 30.0%
ACAATAATTTAGGAGGAGAT+TGG - chr8_2:2183087-2183106 Msa1227090:intron 30.0%
TGATGCGATAACATCATATT+TGG - chr8_2:2183159-2183178 Msa1227090:intron 30.0%
GTGAAAGCAAAATTTGTGAA+TGG + chr8_2:2183372-2183391 None:intergenic 30.0%
!!! TTGTGGTTGGAGTTTTTTCA+TGG - chr8_2:2180198-2180217 Msa1227090:three_prime_UTR 35.0%
! GTTCATTTGATTTCTCCAAC+AGG - chr8_2:2180261-2180280 Msa1227090:exon 35.0%
AATTGTAGAGACAATCCTGT+TGG + chr8_2:2180279-2180298 None:intergenic 35.0%
! TAAGAAGAATTTGAAGCCAC+TGG + chr8_2:2180365-2180384 None:intergenic 35.0%
ATTTGATCAGATGGAAGTTC+TGG - chr8_2:2180499-2180518 Msa1227090:intron 35.0%
! CACCATTTAGTAAGCATTGT+GGG - chr8_2:2180599-2180618 Msa1227090:CDS 35.0%
!! TTGAAAGTGTTGTGAATTGG+AGG - chr8_2:2180853-2180872 Msa1227090:intron 35.0%
!!! TGGTTGTTTTTGACTCAATG+TGG - chr8_2:2180969-2180988 Msa1227090:intron 35.0%
!!! GGTTGTTTTTGACTCAATGT+GGG - chr8_2:2180970-2180989 Msa1227090:intron 35.0%
AATGGATGATCTTACGTTTG+AGG - chr8_2:2181185-2181204 Msa1227090:intron 35.0%
ATGGATGATCTTACGTTTGA+GGG - chr8_2:2181186-2181205 Msa1227090:intron 35.0%
ATTGTTGTGTCAAGTGTGAT+TGG - chr8_2:2181213-2181232 Msa1227090:intron 35.0%
TTATTGGGTGTAACAGCTTA+GGG + chr8_2:2181374-2181393 None:intergenic 35.0%
TTTATTGGGTGTAACAGCTT+AGG + chr8_2:2181375-2181394 None:intergenic 35.0%
ACATCTGCAGTCAAATTAAG+GGG + chr8_2:2181821-2181840 None:intergenic 35.0%
AGAACATTGCATGTGTAATC+TGG - chr8_2:2181891-2181910 Msa1227090:intron 35.0%
AGTGATAGAGTTTACGGTTT+AGG - chr8_2:2181921-2181940 Msa1227090:intron 35.0%
! TTTCCTATCTAAAGTACTCG+AGG - chr8_2:2182075-2182094 Msa1227090:intron 35.0%
! TTCCTATCTAAAGTACTCGA+GGG - chr8_2:2182076-2182095 Msa1227090:intron 35.0%
AAGAATGGAGAGTTAGAAGA+AGG - chr8_2:2182206-2182225 Msa1227090:intron 35.0%
AGCTAACAGATGAGTTTGTA+TGG - chr8_2:2182550-2182569 Msa1227090:intron 35.0%
! ACATTTGCTAGGATGATGAT+TGG - chr8_2:2182599-2182618 Msa1227090:CDS 35.0%
AATGTTACGTAGGTGATACA+AGG + chr8_2:2182626-2182645 None:intergenic 35.0%
!! CTTGATGAGAAATGGGTTAT+TGG + chr8_2:2182654-2182673 None:intergenic 35.0%
CAATAACCCATTTCTCATCA+AGG - chr8_2:2182652-2182671 Msa1227090:CDS 35.0%
!! CATTTCACAAGCTTTGAGTT+TGG - chr8_2:2183202-2183221 Msa1227090:five_prime_UTR 35.0%
! CTAATTGACTCTATTCCACT+TGG + chr8_2:2183270-2183289 None:intergenic 35.0%
TGCTATGGTTGCATCTAAGA+GGG + chr8_2:2179957-2179976 None:intergenic 40.0%
ATGCTATGGTTGCATCTAAG+AGG + chr8_2:2179958-2179977 None:intergenic 40.0%
GAAATGTCCAATTTGTCCAG+TGG - chr8_2:2180346-2180365 Msa1227090:CDS 40.0%
! TTTGAAGCCACTGGACAAAT+TGG + chr8_2:2180356-2180375 None:intergenic 40.0%
CCACAATGCTTACTAAATGG+TGG + chr8_2:2180601-2180620 None:intergenic 40.0%
! CCACCATTTAGTAAGCATTG+TGG - chr8_2:2180598-2180617 Msa1227090:CDS 40.0%
GTCCCACAATGCTTACTAAA+TGG + chr8_2:2180604-2180623 None:intergenic 40.0%
! AGCTGGCTTATGCTATCAAA+AGG - chr8_2:2180628-2180647 Msa1227090:intron 40.0%
GTGTTGTGAATTGGAGGAAA+AGG - chr8_2:2180859-2180878 Msa1227090:intron 40.0%
! ACTCAATGTGGGTGATCTTT+TGG - chr8_2:2180981-2181000 Msa1227090:intron 40.0%
TCTGAGTTTGACACCACATT+TGG + chr8_2:2181021-2181040 None:intergenic 40.0%
! AAATGTGGTGTCAAACTCAG+AGG - chr8_2:2181020-2181039 Msa1227090:intron 40.0%
AGAATTTCGACACAAGGAGT+CGG + chr8_2:2181058-2181077 None:intergenic 40.0%
TCGGAAAGAATTTCGACACA+AGG + chr8_2:2181064-2181083 None:intergenic 40.0%
ATGAAAAAGCTTCCACTCGA+GGG - chr8_2:2181145-2181164 Msa1227090:intron 40.0%
TTGTGTCAAGTGTGATTGGA+TGG - chr8_2:2181217-2181236 Msa1227090:intron 40.0%
AAGCCCATTCTTGCATTTGA+GGG - chr8_2:2181763-2181782 Msa1227090:intron 40.0%
TCTAAAGGAGCTTGGTTACA+AGG - chr8_2:2181790-2181809 Msa1227090:intron 40.0%
CTTGCTCAACAAAAATAGCC+TGG + chr8_2:2181960-2181979 None:intergenic 40.0%
AACCCTCGAGTACTTTAGAT+AGG + chr8_2:2182081-2182100 None:intergenic 40.0%
CCTGTAATAGTCGAAGGAAT+TGG + chr8_2:2182783-2182802 None:intergenic 40.0%
CCAATTCCTTCGACTATTAC+AGG - chr8_2:2182780-2182799 Msa1227090:intron 40.0%
CTTCGACTATTACAGGCTAT+GGG - chr8_2:2182787-2182806 Msa1227090:intron 40.0%
ACTATTACAGGCTATGGGAT+TGG - chr8_2:2182792-2182811 Msa1227090:intron 40.0%
CTATTACAGGCTATGGGATT+GGG - chr8_2:2182793-2182812 Msa1227090:intron 40.0%
TTCATCAAGATTCCACCAAG+TGG - chr8_2:2183252-2183271 Msa1227090:five_prime_UTR 40.0%
! ATTGACTCTATTCCACTTGG+TGG + chr8_2:2183267-2183286 None:intergenic 40.0%
GCTATGGTTGCATCTAAGAG+GGG + chr8_2:2179956-2179975 None:intergenic 45.0%
CACCACATTTGGCTAGTGAA+GGG + chr8_2:2181010-2181029 None:intergenic 45.0%
ACACCACATTTGGCTAGTGA+AGG + chr8_2:2181011-2181030 None:intergenic 45.0%
TTCCGACAATAGTGCTCAAG+CGG - chr8_2:2181078-2181097 Msa1227090:intron 45.0%
ACATACACTTGCATTGCCGT+TGG + chr8_2:2181123-2181142 None:intergenic 45.0%
AACGGCAATGCAAGTGTATG+TGG - chr8_2:2181122-2181141 Msa1227090:intron 45.0%
GATGAAAAAGCTTCCACTCG+AGG - chr8_2:2181144-2181163 Msa1227090:intron 45.0%
TGAAAAAGCTTCCACTCGAG+GGG - chr8_2:2181146-2181165 Msa1227090:intron 45.0%
TCCAGTTTAGATGATCCCTC+AGG - chr8_2:2181346-2181365 Msa1227090:intron 45.0%
CAAGCCCATTCTTGCATTTG+AGG - chr8_2:2181762-2181781 Msa1227090:intron 45.0%
GCTCCCTCAAATGCAAGAAT+GGG + chr8_2:2181769-2181788 None:intergenic 45.0%
AGCTCCCTCAAATGCAAGAA+TGG + chr8_2:2181770-2181789 None:intergenic 45.0%
GCATTTGAGGGAGCTTCTAA+AGG - chr8_2:2181775-2181794 Msa1227090:intron 45.0%
CCATAGCCTGTAATAGTCGA+AGG + chr8_2:2182789-2182808 None:intergenic 45.0%
CCTTCGACTATTACAGGCTA+TGG - chr8_2:2182786-2182805 Msa1227090:intron 45.0%
TGCAGCTGGTAAGTACATTC+TGG - chr8_2:2182818-2182837 Msa1227090:intron 45.0%
!!! GGTGTGCTTGATGCCATTTT+TGG + chr8_2:2182899-2182918 None:intergenic 45.0%
!!! TATTTTAAAAATATTCTTTA+TGG - chr8_2:2181613-2181632 Msa1227090:intron 5.0%
!! AATAACTTAATTATAATATA+AGG - chr8_2:2182374-2182393 Msa1227090:intron 5.0%
!! ATAACTTAATTATAATATAA+GGG - chr8_2:2182375-2182394 Msa1227090:intron 5.0%
AGCATTGTGGGACTGATAGC+TGG - chr8_2:2180611-2180630 Msa1227090:CDS 50.0%
CTCCCTTCACTAGCCAAATG+TGG - chr8_2:2181005-2181024 Msa1227090:intron 50.0%
GCTCCATTGAACACGTCCAA+CGG - chr8_2:2181104-2181123 Msa1227090:intron 50.0%
TTGCCGTTGGACGTGTTCAA+TGG + chr8_2:2181110-2181129 None:intergenic 50.0%
GAAAAAGCTTCCACTCGAGG+GGG - chr8_2:2181147-2181166 Msa1227090:intron 50.0%
AAAAAGCTTCCACTCGAGGG+GGG - chr8_2:2181148-2181167 Msa1227090:intron 50.0%
GCCTGAGGGATCATCTAAAC+TGG + chr8_2:2181350-2181369 None:intergenic 50.0%
TAACAGCTTAGGGAGCCTGA+GGG + chr8_2:2181364-2181383 None:intergenic 50.0%
TGATCAGTGTGGCTCAGAGA+TGG - chr8_2:2181712-2181731 Msa1227090:intron 50.0%
!! AGAGATGGTGGGAGCAGTAT+GGG - chr8_2:2181727-2181746 Msa1227090:intron 50.0%
! AGGGAGCTTCTAAAGGAGCT+TGG - chr8_2:2181782-2181801 Msa1227090:intron 50.0%
TATGGGATTGGGTTTGCAGC+TGG - chr8_2:2182804-2182823 Msa1227090:intron 50.0%
ACACCACCAGCATCAAAAGC+AGG - chr8_2:2182914-2182933 Msa1227090:CDS 50.0%
!! TGTCCTGCTTTTGATGCTGG+TGG + chr8_2:2182920-2182939 None:intergenic 50.0%
!! AGCTGTCCTGCTTTTGATGC+TGG + chr8_2:2182923-2182942 None:intergenic 50.0%
CGCCGCTTGAGCACTATTGT+CGG + chr8_2:2181083-2181102 None:intergenic 55.0%
GGGGTGCATAGTCGGATGAA+TGG - chr8_2:2181167-2181186 Msa1227090:intron 55.0%
GTAACAGCTTAGGGAGCCTG+AGG + chr8_2:2181365-2181384 None:intergenic 55.0%
TCAGTGTGGCTCAGAGATGG+TGG - chr8_2:2181715-2181734 Msa1227090:intron 55.0%
CAGTGTGGCTCAGAGATGGT+GGG - chr8_2:2181716-2181735 Msa1227090:intron 55.0%
!! CAGAGATGGTGGGAGCAGTA+TGG - chr8_2:2181726-2181745 Msa1227090:intron 55.0%
! ACTCGAGGGGGGTGCATAGT+CGG - chr8_2:2181159-2181178 Msa1227090:intron 60.0%
GACTATGCACCCCCCTCGAG+TGG + chr8_2:2181160-2181179 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 2179824 2183392 2179824 ID=Msa1227090;Name=Msa1227090
chr8_2 mRNA 2179824 2183392 2179824 ID=Msa1227090-mRNA-1;Parent=Msa1227090;Name=Msa1227090-mRNA-1;_AED=0.15;_eAED=0.15;_QI=236|1|1|1|0.8|0.66|6|444|240
chr8_2 exon 2179824 2180414 2179824 ID=Msa1227090-mRNA-1:exon:512;Parent=Msa1227090-mRNA-1
chr8_2 exon 2180543 2180638 2180543 ID=Msa1227090-mRNA-1:exon:511;Parent=Msa1227090-mRNA-1
chr8_2 exon 2181378 2181497 2181378 ID=Msa1227090-mRNA-1:exon:510;Parent=Msa1227090-mRNA-1
chr8_2 exon 2182567 2182707 2182567 ID=Msa1227090-mRNA-1:exon:509;Parent=Msa1227090-mRNA-1
chr8_2 exon 2182825 2183062 2182825 ID=Msa1227090-mRNA-1:exon:508;Parent=Msa1227090-mRNA-1
chr8_2 exon 2183176 2183392 2183176 ID=Msa1227090-mRNA-1:exon:507;Parent=Msa1227090-mRNA-1
chr8_2 five_prime_UTR 2183176 2183392 2183176 ID=Msa1227090-mRNA-1:five_prime_utr;Parent=Msa1227090-mRNA-1
chr8_2 five_prime_UTR 2183044 2183062 2183044 ID=Msa1227090-mRNA-1:five_prime_utr;Parent=Msa1227090-mRNA-1
chr8_2 CDS 2182825 2183043 2182825 ID=Msa1227090-mRNA-1:cds;Parent=Msa1227090-mRNA-1
chr8_2 CDS 2182567 2182707 2182567 ID=Msa1227090-mRNA-1:cds;Parent=Msa1227090-mRNA-1
chr8_2 CDS 2181378 2181497 2181378 ID=Msa1227090-mRNA-1:cds;Parent=Msa1227090-mRNA-1
chr8_2 CDS 2180543 2180638 2180543 ID=Msa1227090-mRNA-1:cds;Parent=Msa1227090-mRNA-1
chr8_2 CDS 2180268 2180414 2180268 ID=Msa1227090-mRNA-1:cds;Parent=Msa1227090-mRNA-1
chr8_2 three_prime_UTR 2179824 2180267 2179824 ID=Msa1227090-mRNA-1:three_prime_utr;Parent=Msa1227090-mRNA-1
Gene Sequence

>Msa1227090

ATGGAAGAATATATTCAAAAGACAATTGTGGTTGGAGTTTTTTCATGGACAACAACTTTTCTTGTAATGAGAAAAATCTTTCCAAAACGTTCATTTGATTTCTCCAACAGGATTGTCTCTACAATTCATGCAATTTTAGCAGTAACATTGGCTACTTTATCTGTTCAAGATTGGAAATGTCCAATTTGTCCAGTGGCTTCAAATTCTTCTTACAGACAGATGGAAGTTCTGGCAGTGAGCCTGTCATATCTAATTTATGATCTAGTGTGTTGTTTATTTGATGAAAAATTCAATTGGGACAACACTATCCACCATTTAGTAAGCATTGTGGGACTGATAGCTGGCTTATGCTATCAAAAGTGTGGCTCAGAGATGGTGGGAGCAGTATGGGTAACAGAGATGTCAAGCCCATTCTTGCATTTGAGGGAGCTTCTAAAGGAGCTTGGTTACAAGGACACTCCCCTTAATTTGACTGCAGATATTTTATTTGCTTCAATATTTACATTTGCTAGGATGATGATTGGACCTTGTATCACCTACGTAACATTAACTTCCAATAACCCATTTCTCATCAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGTACATTCTGGTTCTTCAAAATTGTAAGAATGATGAGATACAAACTAACCAAGAAATCATCATCATCCAAAAATGGCATCAAGCACACCACCAGCATCAAAAGCAGGACAGCTAGCTAG

Protein sequence

>Msa1227090

MEEYIQKTIVVGVFSWTTTFLVMRKIFPKRSFDFSNRIVSTIHAILAVTLATLSVQDWKCPICPVASNSSYRQMEVLAVSLSYLIYDLVCCLFDEKFNWDNTIHHLVSIVGLIAGLCYQKCGSEMVGAVWVTEMSSPFLHLRELLKELGYKDTPLNLTADILFASIFTFARMMIGPCITYVTLTSNNPFLIKAMGLGLQLVSTFWFFKIVRMMRYKLTKKSSSSKNGIKHTTSIKSRTAS*