AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0361500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361500 MtrunA17_Chr3g0099891 88.087 277 31 1 35 309 179 455 3.06e-170 480
Msa0361500 MtrunA17_Chr3g0099901 72.202 277 72 1 33 309 215 486 2.66e-122 359
Msa0361500 MtrunA17_Chr2g0291201 39.236 288 160 7 30 309 172 452 1.50e-59 197
Msa0361500 MtrunA17_Chr4g0001991 41.111 270 154 4 41 308 251 517 1.88e-59 198
Msa0361500 MtrunA17_Chr1g0212321 39.051 274 153 6 42 308 220 486 5.11e-44 156
Msa0361500 MtrunA17_Chr7g0275731 38.621 290 161 8 29 309 204 485 1.40e-43 155
Msa0361500 MtrunA17_Chr1g0165201 37.226 274 158 6 42 308 203 469 1.00e-38 142
Msa0361500 MtrunA17_Chr3g0130931 35.640 289 164 10 33 309 171 449 3.51e-34 129
Msa0361500 MtrunA17_Chr1g0210201 35.401 274 159 8 42 308 205 467 1.02e-33 128
Msa0361500 MtrunA17_Chr5g0442921 31.313 297 183 8 31 308 259 553 3.80e-31 122
Msa0361500 MtrunA17_Chr6g0484901 33.824 272 165 6 42 308 230 491 1.64e-30 120
Msa0361500 MtrunA17_Chr3g0095891 31.544 298 180 11 31 308 165 458 5.42e-29 115
Msa0361500 MtrunA17_Chr2g0308001 30.928 291 175 11 35 308 127 408 2.31e-27 110
Msa0361500 MtrunA17_Chr2g0307991 29.492 295 181 11 29 308 122 404 3.47e-27 109
Msa0361500 MtrunA17_Chr8g0353261 31.488 289 177 8 29 308 157 433 5.02e-27 109
Msa0361500 MtrunA17_Chr3g0082281 29.568 301 189 10 18 308 32 319 3.66e-26 105
Msa0361500 MtrunA17_Chr5g0415951 31.186 295 177 11 33 308 147 434 8.85e-26 106
Msa0361500 MtrunA17_Chr1g0164401 30.690 290 178 10 29 308 152 428 1.26e-25 105
Msa0361500 MtrunA17_Chr5g0419291 32.014 278 172 9 40 308 159 428 1.72e-25 105
Msa0361500 MtrunA17_Chr5g0435871 32.155 283 168 10 40 308 162 434 7.65e-25 103
Msa0361500 MtrunA17_Chr5g0435971 31.802 283 169 10 40 308 159 431 4.24e-24 101
Msa0361500 MtrunA17_Chr2g0309561 30.769 299 169 11 35 308 223 508 7.41e-24 101
Msa0361500 MtrunA17_Chr8g0352671 30.961 281 172 9 42 308 164 436 1.06e-22 97.4
Msa0361500 MtrunA17_Chr3g0087851 31.944 288 175 11 34 308 157 436 1.12e-22 97.4
Msa0361500 MtrunA17_Chr2g0310831 28.772 285 176 9 39 308 168 440 1.27e-22 97.4
Msa0361500 MtrunA17_Chr8g0352661 31.429 280 174 9 42 308 162 436 1.37e-22 97.4
Msa0361500 MtrunA17_Chr5g0395931 28.125 320 186 13 24 308 125 435 1.95e-21 94.0
Msa0361500 MtrunA17_Chr2g0333991 28.929 280 182 9 35 304 159 431 2.51e-21 93.6
Msa0361500 MtrunA17_Chr8g0386441 31.047 277 173 9 42 308 161 429 3.22e-21 93.2
Msa0361500 MtrunA17_Chr8g0390761 27.969 261 174 6 42 296 191 443 4.06e-21 93.2
Msa0361500 MtrunA17_Chr2g0312941 30.421 309 178 12 27 303 145 448 4.08e-21 93.2
Msa0361500 MtrunA17_Chr5g0419151 28.302 265 175 6 52 308 110 367 6.30e-21 91.7
Msa0361500 MtrunA17_Chr2g0310821 30.420 286 174 11 32 308 173 442 8.49e-21 92.0
Msa0361500 MtrunA17_Chr1g0189381 28.146 302 175 12 33 308 144 429 9.41e-21 92.0
Msa0361500 MtrunA17_Chr5g0434411 27.273 297 182 11 32 308 155 437 1.01e-20 92.0
Msa0361500 MtrunA17_Chr5g0395911 28.283 297 187 12 31 308 124 413 1.03e-20 91.7
Msa0361500 MtrunA17_Chr2g0310801 31.392 309 171 12 25 308 141 433 1.09e-20 91.7
Msa0361500 MtrunA17_Chr2g0311451 28.873 284 185 9 35 308 159 435 2.93e-20 90.5
Msa0361500 MtrunA17_Chr1g0179091 31.429 245 141 11 75 308 138 366 9.80e-20 88.6
Msa0361500 MtrunA17_Chr6g0486981 28.912 294 186 11 28 308 153 436 1.32e-19 88.6
Msa0361500 MtrunA17_Chr2g0307461 28.956 297 181 11 34 308 142 430 2.51e-19 87.8
Msa0361500 MtrunA17_Chr5g0395891 27.303 304 190 12 27 308 18 312 2.92e-19 86.3
Msa0361500 MtrunA17_Chr2g0320621 26.048 334 191 11 19 309 118 438 7.68e-19 86.7
Msa0361500 MtrunA17_Chr1g0179751 27.609 297 182 10 34 308 184 469 1.41e-18 85.9
Msa0361500 MtrunA17_Chr5g0395871 30.357 280 176 11 40 308 153 424 7.08e-18 83.6
Msa0361500 MtrunA17_Chr4g0027681 27.190 331 190 12 19 309 118 437 9.28e-18 83.6
Msa0361500 MtrunA17_Chr3g0110191 27.333 300 190 11 28 308 148 438 2.03e-17 82.4
Msa0361500 MtrunA17_Chr3g0133071 31.019 216 129 9 105 309 232 438 3.08e-17 81.6
Msa0361500 MtrunA17_Chr6g0487471 30.142 282 178 8 40 308 159 434 3.11e-17 81.6
Msa0361500 MtrunA17_Chr8g0352691 29.630 270 167 10 50 308 2 259 3.62e-17 79.7
Msa0361500 MtrunA17_Chr6g0457401 29.749 279 178 9 40 308 166 436 5.24e-16 78.2
Msa0361500 MtrunA17_Chr4g0061641 31.541 279 168 10 42 308 129 396 7.41e-16 77.4
Msa0361500 MtrunA17_Chr5g0434441 27.609 297 183 11 32 308 142 426 2.17e-15 76.3
Msa0361500 MtrunA17_Chr7g0267171 26.616 263 167 8 67 309 210 466 5.88e-15 75.1
Msa0361500 MtrunA17_Chr4g0023351 35.374 147 84 5 35 172 127 271 1.05e-14 73.2
Msa0361500 MtrunA17_Chr7g0249451 26.190 294 175 12 41 308 153 430 1.65e-13 70.9
Msa0361500 MtrunA17_Chr4g0056211 27.431 288 162 12 60 308 191 470 2.54e-13 70.1
Msa0361500 MtrunA17_Chr4g0053721 25.589 297 192 13 34 308 141 430 2.79e-13 70.1
Msa0361500 MtrunA17_Chr5g0399171 24.832 298 181 11 48 308 178 469 4.31e-12 66.6
Msa0361500 MtrunA17_Chr4g0065581 26.692 266 159 7 76 305 174 439 2.01e-11 64.3
Msa0361500 MtrunA17_Chr5g0401601 24.746 295 197 11 34 308 149 438 3.32e-11 63.9
Msa0361500 MtrunA17_Chr2g0287811 27.675 271 160 9 71 305 141 411 4.99e-11 63.2
Msa0361500 MtrunA17_Chr6g0484731 23.411 299 185 11 40 308 266 550 7.82e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361500 AT5G10770.1 56.569 274 113 2 35 308 206 473 5.24e-105 315
Msa0361500 AT5G10760.1 48.746 279 133 5 31 308 195 464 4.22e-78 245
Msa0361500 AT1G79720.1 40.074 272 154 5 42 309 217 483 1.25e-53 182
Msa0361500 AT3G61820.1 40.138 289 157 9 31 308 200 483 4.87e-44 157
Msa0361500 AT1G01300.1 38.062 289 162 8 29 308 204 484 1.76e-43 155
Msa0361500 AT3G20015.1 36.727 275 160 6 41 308 203 470 9.62e-40 145
Msa0361500 AT2G03200.1 34.021 291 168 9 35 308 175 458 2.24e-36 136
Msa0361500 AT1G25510.1 37.457 291 158 9 31 308 204 483 1.21e-35 134
Msa0361500 AT3G54400.1 32.192 292 171 13 29 308 148 424 6.11e-33 126
Msa0361500 AT1G09750.1 32.646 291 169 13 33 309 172 449 2.44e-32 125
Msa0361500 AT3G18490.1 34.828 290 166 9 33 308 220 500 5.20e-31 122
Msa0361500 AT3G59080.1 30.537 298 185 8 31 308 237 532 2.87e-30 120
Msa0361500 AT2G42980.1 31.229 301 181 10 31 308 227 524 1.71e-29 117
Msa0361500 AT3G59080.2 30.104 289 181 7 39 308 210 496 2.52e-28 114
Msa0361500 AT3G25700.1 28.070 285 186 6 42 308 166 449 1.46e-26 108
Msa0361500 AT1G64830.1 32.082 293 172 9 30 308 149 428 1.68e-26 108
Msa0361500 AT5G33340.1 30.634 284 179 9 35 308 159 434 2.52e-23 99.8
Msa0361500 AT5G07030.1 30.952 294 175 11 29 308 175 454 4.53e-22 96.3
Msa0361500 AT1G65240.1 27.336 289 172 11 42 308 154 426 1.45e-20 92.0
Msa0361500 AT3G12700.1 27.148 291 187 10 35 308 178 460 1.88e-20 91.7
Msa0361500 AT1G66180.1 29.221 308 165 15 32 308 141 426 4.60e-20 90.5
Msa0361500 AT1G05840.1 28.475 295 167 12 41 308 161 438 6.50e-20 90.1
Msa0361500 AT2G28220.1 28.053 303 186 13 28 309 107 398 8.73e-20 89.4
Msa0361500 AT2G28040.1 27.907 301 190 11 24 308 101 390 9.98e-20 89.0
Msa0361500 AT1G08210.3 27.972 286 177 11 42 308 213 488 1.22e-19 89.7
Msa0361500 AT4G30040.1 29.310 290 172 10 34 303 151 427 1.22e-19 89.0
Msa0361500 AT1G08210.4 27.972 286 177 11 42 308 199 474 1.26e-19 89.4
Msa0361500 AT2G28040.2 27.907 301 190 11 24 308 92 381 1.47e-19 88.6
Msa0361500 AT1G08210.1 27.972 286 177 11 42 308 165 440 1.63e-19 89.0
Msa0361500 AT2G28010.1 26.599 297 194 10 28 309 105 392 8.86e-19 86.3
Msa0361500 AT2G23945.1 27.241 290 181 12 39 308 169 448 1.12e-18 86.7
Msa0361500 AT3G02740.2 26.990 289 176 13 42 308 89 364 1.57e-18 85.9
Msa0361500 AT4G30030.1 28.521 284 179 11 39 309 148 420 1.66e-18 85.9
Msa0361500 AT3G02740.1 26.990 289 176 13 42 308 164 439 1.75e-18 85.9
Msa0361500 AT2G28225.1 28.053 303 186 13 28 309 107 398 1.80e-18 85.5
Msa0361500 AT2G28030.1 27.517 298 190 11 28 309 101 388 1.90e-18 85.5
Msa0361500 AT5G37540.1 26.144 306 180 13 32 309 152 439 3.57e-18 84.7
Msa0361500 AT5G36260.1 25.329 304 185 12 30 308 147 433 1.59e-16 80.1
Msa0361500 AT5G43100.2 26.599 297 179 12 35 308 137 417 7.55e-16 78.2
Msa0361500 AT5G43100.1 26.599 297 179 12 35 308 137 417 7.60e-16 78.6
Msa0361500 AT1G08210.2 27.969 261 159 11 42 283 165 415 1.06e-15 77.8
Msa0361500 AT2G35615.1 26.441 295 190 9 35 308 155 443 1.36e-15 77.4
Msa0361500 AT1G31450.1 26.190 294 190 10 35 308 155 441 1.01e-14 74.7
Msa0361500 AT5G45120.1 27.184 309 180 17 36 308 179 478 7.25e-14 72.4
Msa0361500 AT1G49050.2 22.896 297 190 12 42 308 108 395 6.97e-13 68.9
Msa0361500 AT1G49050.1 22.896 297 190 12 42 308 281 568 1.34e-12 68.6
Msa0361500 AT3G52500.1 25.623 281 176 11 54 308 194 467 1.78e-12 68.2
Msa0361500 AT5G02190.1 26.688 311 187 16 32 309 141 443 5.39e-12 66.6
Msa0361500 AT4G12920.1 21.181 288 203 8 27 308 118 387 1.50e-11 65.1

Find 123 sgRNAs with CRISPR-Local

Find 516 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTCTGTCATTAATTTA+AGG 0.141308 3_1:+52062923 Msa0361500:three_prime_UTR
CTGATGCATATTGTTATAAT+TGG 0.147798 3_1:-52060348 None:intergenic
CCTTCCACTTCCAGCGTTAT+TGG 0.163422 3_1:+52062165 Msa0361500:CDS
TTCCATGTTGCTTGATTTCT+TGG 0.164282 3_1:-52062785 None:intergenic
GCAAAGTTACCAGCTATTTA+TGG 0.167151 3_1:+52060386 Msa0361500:five_prime_UTR
GATACTTCGCCATTTCTTTC+CGG 0.217669 3_1:-52062431 None:intergenic
GATAGGGATATTACTATCTT+TGG 0.256606 3_1:+52062636 Msa0361500:CDS
GCTATTTATGGTAACCATAT+TGG 0.282596 3_1:+52060398 Msa0361500:five_prime_UTR
TTAACAAAAGCATGTGAATA+TGG 0.301372 3_1:+52061922 Msa0361500:CDS
GCGAAGTATCCAGCTGCTTC+GGG 0.312519 3_1:+52062444 Msa0361500:CDS
AATAGTTCCCTGTTCCAATA+TGG 0.325471 3_1:-52060412 None:intergenic
TTCCTCCCATGTTGTTTCAT+TGG 0.336348 3_1:-52054712 None:intergenic
TGATATTGAAAGCTTGGTTT+TGG 0.341030 3_1:-52062313 None:intergenic
TAACAATATGCATCAGGAAT+TGG 0.341210 3_1:+52060355 Msa0361500:five_prime_UTR
GGCGAAGTATCCAGCTGCTT+CGG 0.345692 3_1:+52062443 Msa0361500:CDS
GATGTTGGTGGTGGTAAGAT+TGG 0.347346 3_1:+52062693 Msa0361500:CDS
TTTGTTAATGCAGAACATTT+TGG 0.351134 3_1:-52061907 None:intergenic
AATTGAGTCCGTTGGCGTTA+TGG 0.358696 3_1:-52062001 None:intergenic
GGCGCCACCGAAGGAGAAAA+TGG 0.359106 3_1:-52062340 None:intergenic
CCAAAGACAAAACTAATCTT+TGG 0.360134 3_1:-52062522 None:intergenic
CAATAAGAAGTAGACTTTGA+TGG 0.365088 3_1:-52060566 None:intergenic
GATACATGCTATGATCTTAG+AGG 0.365828 3_1:+52062480 Msa0361500:CDS
GTTGGCCACCTTGTTATTAT+CGG 0.372473 3_1:-52062208 None:intergenic
TATGGTAACCATATTGGAAC+AGG 0.376024 3_1:+52060404 Msa0361500:five_prime_UTR
ATAGGGATATTACTATCTTT+GGG 0.377821 3_1:+52062637 Msa0361500:CDS
TAGGGCTTGGTACTCCTAAA+AGG 0.381666 3_1:+52060444 Msa0361500:five_prime_UTR
GGAGGATGATATTGAAAGCT+TGG 0.382168 3_1:-52062319 None:intergenic
GTTTGTTGGACGAAAGAGAT+TGG 0.382411 3_1:-52062105 None:intergenic
CTTTGCCATTGTTATTCAGT+TGG 0.387737 3_1:-52060250 None:intergenic
ACGCCAACGGACTCAATTGA+TGG 0.397126 3_1:+52062006 Msa0361500:CDS
AACGATGTCAAGACCGTAGA+AGG 0.398374 3_1:-52062277 None:intergenic
ATTGTTATAATTGGATAGCT+TGG 0.398482 3_1:-52060339 None:intergenic
TTGTTGCTGGCAATCGTTCA+TGG 0.400448 3_1:+52062874 Msa0361500:three_prime_UTR
GAGTTCGAGGCAAGTTTGTT+TGG 0.405591 3_1:+52062593 Msa0361500:CDS
GGCATGTCTGCCGGCATATT+AGG 0.407159 3_1:+52062069 Msa0361500:CDS
TTTGCCATTGTTATTCAGTT+GGG 0.407382 3_1:-52060249 None:intergenic
CTAGCCTTCGTCATGCATTC+CGG 0.407455 3_1:+52062412 Msa0361500:CDS
GGTTGTGGAAATTGAACTAT+TGG 0.410781 3_1:+52062836 Msa0361500:three_prime_UTR
ATGTTGGTGGTGGTAAGATT+GGG 0.410974 3_1:+52062694 Msa0361500:CDS
GCAAGTTTGTTTGGCATTTG+CGG 0.411089 3_1:+52062602 Msa0361500:CDS
GTTATTGGCCACCTCACATT+TGG 0.411425 3_1:+52062180 Msa0361500:CDS
TTGCGGCGAATAGAGATGAT+AGG 0.412791 3_1:+52062619 Msa0361500:CDS
ACTACGTGAGATTGTGGATA+AGG 0.413646 3_1:-52062250 None:intergenic
TTCTTAAACTTGATAAAGAA+AGG 0.414261 3_1:+52060300 Msa0361500:five_prime_UTR
AGTGTATTTAACGGCGTTGT+TGG 0.416296 3_1:-52062226 None:intergenic
TTCACGGCTGAAGTATCCTT+TGG 0.424225 3_1:-52061971 None:intergenic
AAGATTGGGTTTCGTTCAAA+TGG 0.429642 3_1:+52062708 Msa0361500:CDS
GCGTTATGGTTAGTCGTTCA+CGG 0.441094 3_1:-52061987 None:intergenic
TCATGCATTCCGGAAAGAAA+TGG 0.441442 3_1:+52062422 Msa0361500:CDS
ATTTGAAACCCCGAAGCAGC+TGG 0.463069 3_1:-52062453 None:intergenic
ACTTGAATATGTGTTGTTGC+TGG 0.466212 3_1:+52062861 Msa0361500:three_prime_UTR
CAATTATAACAATATGCATC+AGG 0.473980 3_1:+52060349 Msa0361500:five_prime_UTR
CAATACAACCAAGGTCTGTT+CGG 0.478376 3_1:+52062048 Msa0361500:CDS
CTACGTGAGATTGTGGATAA+GGG 0.480711 3_1:-52062249 None:intergenic
CTAGAGGTTGTTTATGATGT+TGG 0.484309 3_1:+52062678 Msa0361500:CDS
GGTGGTGTCACAGTGGAGCT+TGG 0.484509 3_1:+52062546 Msa0361500:CDS
GGTCTGTTCGGCATGTCTGC+CGG 0.485877 3_1:+52062060 Msa0361500:CDS
TTGTTATTCAGTTGGGAACA+TGG 0.486548 3_1:-52060242 None:intergenic
TCTGCCGGCATATTAGGCCT+TGG 0.494138 3_1:+52062075 Msa0361500:CDS
AGTATCCTTTGGAGAAGGAT+TGG 0.501167 3_1:-52061960 None:intergenic
ACAGTGGAGCTTGGTGCACA+CGG 0.506280 3_1:+52062555 Msa0361500:CDS
GTGGCCAATAACGCTGGAAG+TGG 0.517266 3_1:-52062169 None:intergenic
GTTGTTTATGATGTTGGTGG+TGG 0.521861 3_1:+52062684 Msa0361500:CDS
GAGGTTGTTTATGATGTTGG+TGG 0.521866 3_1:+52062681 Msa0361500:CDS
TGTATTGCCCACAACCGAAA+AGG 0.522205 3_1:-52062032 None:intergenic
TTCTACGGTCTTGACATCGT+TGG 0.522510 3_1:+52062279 Msa0361500:CDS
TCACGTAGTAATTCCTTCTA+CGG 0.522886 3_1:+52062264 Msa0361500:CDS
GGATAAGGGAGTGTATTTAA+CGG 0.524324 3_1:-52062235 None:intergenic
GTAGAGCTGCAGGAAGATGA+TGG 0.527914 3_1:-52054768 None:intergenic
TCTTAAACTTGATAAAGAAA+GGG 0.529667 3_1:+52060301 Msa0361500:five_prime_UTR
TCTTCCTGCAGCTCTACAAA+AGG 0.530143 3_1:+52054774 Msa0361500:five_prime_UTR
TCTTAGAGGGAGGGAAAATG+TGG 0.532550 3_1:+52062494 Msa0361500:CDS
TGTGAGGTGGCCAATAACGC+TGG 0.539085 3_1:-52062175 None:intergenic
GGAATTACTACGTGAGATTG+TGG 0.541847 3_1:-52062256 None:intergenic
CAAACTTGCCTCGAACTCAC+AGG 0.544943 3_1:-52062588 None:intergenic
ATATGGTTACCATAAATAGC+TGG 0.551184 3_1:-52060395 None:intergenic
TTAAGAATATCATCGTGTGT+TGG 0.554209 3_1:-52060284 None:intergenic
TGCGGCGAATAGAGATGATA+GGG 0.564043 3_1:+52062620 Msa0361500:CDS
GTCAATGATGGCGCCACCGA+AGG 0.564071 3_1:-52062349 None:intergenic
ACGACCAAGGCCTAATATGC+CGG 0.564153 3_1:-52062079 None:intergenic
CAGACATGCCGAACAGACCT+TGG 0.571057 3_1:-52062056 None:intergenic
TTAGATGTGGTACACAAGCA+TGG 0.577287 3_1:+52060218 Msa0361500:five_prime_UTR
CAGTGGAGCTTGGTGCACAC+GGG 0.577773 3_1:+52062556 Msa0361500:CDS
ATACTGGTAGTGATCTCACT+TGG 0.579914 3_1:+52060486 Msa0361500:five_prime_UTR
TCATCTTGCTGTGTGTAACA+AGG 0.580818 3_1:-52060533 None:intergenic
GCTGAAGTATCCTTTGGAGA+AGG 0.584834 3_1:-52061965 None:intergenic
GGTGGCGCCATCATTGACTC+TGG 0.585383 3_1:+52062354 Msa0361500:CDS
GACAGTACCAGAGTCAATGA+TGG 0.592119 3_1:-52062361 None:intergenic
GAGAGCTGATGCTAACAAGA+TGG 0.592360 3_1:-52054740 None:intergenic
AAACCATCAATTGAGTCCGT+TGG 0.600046 3_1:-52062009 None:intergenic
ATACATGCTATGATCTTAGA+GGG 0.604390 3_1:+52062481 Msa0361500:CDS
AAACTTGCCTCGAACTCACA+GGG 0.605730 3_1:-52062587 None:intergenic
CATTTGCCAATGAAACAACA+TGG 0.606235 3_1:+52054706 Msa0361500:five_prime_UTR
TAGATGTGGTACACAAGCAT+GGG 0.609756 3_1:+52060219 Msa0361500:five_prime_UTR
CGAAGTATCCAGCTGCTTCG+GGG 0.609858 3_1:+52062445 Msa0361500:CDS
AAGAAAAGCATCATTAGATG+TGG 0.610124 3_1:+52060205 Msa0361500:five_prime_UTR
ATGCTATGATCTTAGAGGGA+GGG 0.613433 3_1:+52062485 Msa0361500:CDS
ACTCAACTATCTTCATCCAC+AGG 0.613837 3_1:+52060617 Msa0361500:CDS
CCAATAACGCTGGAAGTGGA+AGG 0.616792 3_1:-52062165 None:intergenic
ATCCAAGAAATCAAGCAACA+TGG 0.617211 3_1:+52062783 Msa0361500:three_prime_UTR
AGTGACCAATCCTTCTCCAA+AGG 0.622469 3_1:+52061955 Msa0361500:CDS
CTTTCCGGAATGCATGACGA+AGG 0.622682 3_1:-52062416 None:intergenic
GTGTAACAAGGACGAGCACA+AGG 0.637868 3_1:-52060521 None:intergenic
CGGTAACTCCAAATGTGAGG+TGG 0.644430 3_1:-52062188 None:intergenic
TGCCAATGAAACAACATGGG+AGG 0.644807 3_1:+52054710 Msa0361500:five_prime_UTR
TGGAGTTACCGATAATAACA+AGG 0.650947 3_1:+52062200 Msa0361500:CDS
ACGACTAACCATAACGCCAA+CGG 0.661051 3_1:+52061993 Msa0361500:CDS
AGTGGAGCTTGGTGCACACG+GGG 0.662193 3_1:+52062557 Msa0361500:CDS
AAGAGATTGGATGACGACCA+AGG 0.664701 3_1:-52062092 None:intergenic
TGTTCCCAACTGAATAACAA+TGG 0.664710 3_1:+52060245 Msa0361500:five_prime_UTR
TATCGGTAACTCCAAATGTG+AGG 0.670780 3_1:-52062191 None:intergenic
CTTTGGTGGTGGTGTCACAG+TGG 0.671474 3_1:+52062539 Msa0361500:CDS
CGAAGGCTAGCATAGGCAGA+CGG 0.674059 3_1:-52062399 None:intergenic
CATGCTATGATCTTAGAGGG+AGG 0.678035 3_1:+52062484 Msa0361500:CDS
TGCATGACGAAGGCTAGCAT+AGG 0.681279 3_1:-52062406 None:intergenic
AGGCTAGCATAGGCAGACGG+CGG 0.684561 3_1:-52062396 None:intergenic
ATGGTAACCATATTGGAACA+GGG 0.688291 3_1:+52060405 Msa0361500:five_prime_UTR
TGTGCAACAAAGAACACTAG+AGG 0.689240 3_1:+52062662 Msa0361500:CDS
GGTTGTGGGCAATACAACCA+AGG 0.693092 3_1:+52062039 Msa0361500:CDS
ATTTGCCAATGAAACAACAT+GGG 0.698868 3_1:+52054707 Msa0361500:five_prime_UTR
ACTCTGGTACTGTCATTACA+CGG 0.698917 3_1:+52062370 Msa0361500:CDS
GCCACCGAAGGAGAAAATGG+AGG 0.718357 3_1:-52062337 None:intergenic
AGTTACCGATAATAACAAGG+TGG 0.780688 3_1:+52062203 Msa0361500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAAAATAAAAAAT+AGG - chr3_1:52057157-52057176 None:intergenic 0.0%
!!! TATTTAAAATTTTTAAAATT+TGG + chr3_1:52056315-52056334 Msa0361500:intron 0.0%
!! AATTAAAAAAAATAAAAAAT+AGG + chr3_1:52057157-52057176 Msa0361500:intron 0.0%
!! ATAAAAAAATAAAAAATTAT+TGG + chr3_1:52057707-52057726 Msa0361500:intron 0.0%
!! TAAAAAAATAAAAAATTATT+GGG + chr3_1:52057708-52057727 Msa0361500:intron 0.0%
!! TAAATTAAATTAAATTAAAT+TGG - chr3_1:52059431-52059450 None:intergenic 0.0%
!! ATTATATTATATATTTATTA+TGG + chr3_1:52060647-52060666 Msa0361500:intron 0.0%
!!! TATTTTTTTTATTTTTAATA+TGG + chr3_1:52061020-52061039 Msa0361500:intron 0.0%
!!! ATTTTTTTTATTTTTAATAT+GGG + chr3_1:52061021-52061040 Msa0361500:intron 0.0%
!! AATTAAGTTTATAATACATT+GGG - chr3_1:52054829-52054848 None:intergenic 10.0%
!! TAATTAAGTTTATAATACAT+TGG - chr3_1:52054830-52054849 None:intergenic 10.0%
!! TAACTATAAATAAGTTAATT+AGG - chr3_1:52055000-52055019 None:intergenic 10.0%
!! TAATAATAGAAAACAATTAT+TGG + chr3_1:52055491-52055510 Msa0361500:intron 10.0%
!!! TTTTTTCAAAACAAAAAAAA+TGG - chr3_1:52055921-52055940 None:intergenic 10.0%
!! TTGAAAAAATTAAAAAAAAG+AGG + chr3_1:52055932-52055951 Msa0361500:intron 10.0%
!! TGAAAAAATTAAAAAAAAGA+GGG + chr3_1:52055933-52055952 Msa0361500:intron 10.0%
!! TAAAAAATTAGAAAAAAGTT+CGG + chr3_1:52056192-52056211 Msa0361500:intron 10.0%
!!! TTTAGTTTAATTAAAAATTC+AGG + chr3_1:52056416-52056435 Msa0361500:intron 10.0%
!!! TATTTAAAATTTTCAAAATC+TGG - chr3_1:52056673-52056692 None:intergenic 10.0%
!! TAGAAGATATTTAAAAATAA+TGG - chr3_1:52056753-52056772 None:intergenic 10.0%
!! ATATATGATCTATTATATAA+GGG - chr3_1:52057478-52057497 None:intergenic 10.0%
!! TATATATGATCTATTATATA+AGG - chr3_1:52057479-52057498 None:intergenic 10.0%
!! AAAATAAATTAAACAATTCA+TGG + chr3_1:52057908-52057927 Msa0361500:intron 10.0%
!! AAATAAATTAAACAATTCAT+GGG + chr3_1:52057909-52057928 Msa0361500:intron 10.0%
!!! CTTTTGTTATTTTTTATAAA+AGG - chr3_1:52058255-52058274 None:intergenic 10.0%
!! ATTAAAGATATATATTCAAT+TGG - chr3_1:52059967-52059986 None:intergenic 10.0%
!!! TTTTATTATTAATAAAATGG+AGG + chr3_1:52060976-52060995 Msa0361500:intron 10.0%
!! AAGTTTATAAAAGAAAATTA+AGG + chr3_1:52061119-52061138 Msa0361500:intron 10.0%
!! GTTAAAATTAAATAAAATCA+AGG + chr3_1:52061146-52061165 Msa0361500:intron 10.0%
!! ACTGAAAAAAAAAAATATAT+AGG + chr3_1:52061285-52061304 Msa0361500:intron 10.0%
!!! TAAAATAATTGTATTTTGAT+CGG + chr3_1:52062815-52062834 Msa0361500:three_prime_UTR 10.0%
!!! TTTTTTTTTTATATGTAGTT+TGG + chr3_1:52062984-52063003 Msa0361500:three_prime_UTR 10.0%
!! GTATTATAAACTTAATTAGT+TGG + chr3_1:52054832-52054851 Msa0361500:intron 15.0%
!! ACTTATTTATAGTTAATCTT+AGG + chr3_1:52055005-52055024 Msa0361500:intron 15.0%
!! AATAAATAAGGATATAATAG+TGG - chr3_1:52055135-52055154 None:intergenic 15.0%
!! TCATAGAAGTTATAAATAAA+AGG - chr3_1:52055424-52055443 None:intergenic 15.0%
!!! TAACTTCTATGATAATTTTA+AGG + chr3_1:52055432-52055451 Msa0361500:intron 15.0%
!!! AATTGTTTTCTATTATTACT+TGG - chr3_1:52055489-52055508 None:intergenic 15.0%
!! ATTAAGCCTTAATAATATTA+AGG - chr3_1:52055647-52055666 None:intergenic 15.0%
!! AATCTAATAATTTAATGATG+TGG - chr3_1:52056075-52056094 None:intergenic 15.0%
!! TAGAAGATATTTAAAAATAC+TGG + chr3_1:52056230-52056249 Msa0361500:intron 15.0%
!!! TTTAATTTTTCGATTGTAAT+TGG - chr3_1:52056360-52056379 None:intergenic 15.0%
!!! TTTAATTTTCATACTGTAAT+TGG + chr3_1:52056629-52056648 Msa0361500:intron 15.0%
!! ATTAAAATGATTTAATGATG+TGG + chr3_1:52056965-52056984 Msa0361500:intron 15.0%
!! GAAAAAAATACTGAAAAAAT+TGG - chr3_1:52057058-52057077 None:intergenic 15.0%
!! TTGAAGAAATTAAAAAAAGA+GGG - chr3_1:52057106-52057125 None:intergenic 15.0%
!! TTTGAAGAAATTAAAAAAAG+AGG - chr3_1:52057107-52057126 None:intergenic 15.0%
!! TCTTCAAAACAAAAAAAAAA+TGG + chr3_1:52057119-52057138 Msa0361500:intron 15.0%
!! AAAAATAAAAAATTATTGGG+CGG + chr3_1:52057711-52057730 Msa0361500:intron 15.0%
!! TATTATATAGATTTATGATG+AGG - chr3_1:52058193-52058212 None:intergenic 15.0%
!! AAATAACAAAAGATCAAATT+TGG + chr3_1:52058263-52058282 Msa0361500:intron 15.0%
!! TGAAATCTAAATACAAATTT+AGG + chr3_1:52058330-52058349 Msa0361500:intron 15.0%
!!! CAATTTTCTTTTTTATTTTG+AGG - chr3_1:52058386-52058405 None:intergenic 15.0%
!! CTCAAAATAAAAAAGAAAAT+TGG + chr3_1:52058384-52058403 Msa0361500:intron 15.0%
!! TATAAAAATAACTACAAAGA+GGG - chr3_1:52058610-52058629 None:intergenic 15.0%
!! ATATAAAAATAACTACAAAG+AGG - chr3_1:52058611-52058630 None:intergenic 15.0%
!! ATATAATAGTAGTATAGTTA+GGG - chr3_1:52058744-52058763 None:intergenic 15.0%
!!! TATACATATATTTTTTTTGG+TGG + chr3_1:52059831-52059850 Msa0361500:intron 15.0%
!!! TTAAAATGTCTCATTTTTAT+AGG + chr3_1:52061050-52061069 Msa0361500:intron 15.0%
!!! TTTTCTTTTATAAACTTTAC+AGG - chr3_1:52061116-52061135 None:intergenic 15.0%
!! TAAAGGATTAAACAAATTAA+GGG - chr3_1:52061513-52061532 None:intergenic 15.0%
!! TTAAAGGATTAAACAAATTA+AGG - chr3_1:52061514-52061533 None:intergenic 15.0%
!!! ATATTATTTGTTTTGAAAGA+AGG + chr3_1:52061597-52061616 Msa0361500:intron 15.0%
!!! ATAAATTCATTTTGTTATGT+AGG + chr3_1:52061874-52061893 Msa0361500:intron 15.0%
!!! AATTTTGTTGAATTTTTTAG+AGG - chr3_1:52062130-52062149 None:intergenic 15.0%
!! CTATAAACTAGATACATAAT+TGG + chr3_1:52054933-52054952 Msa0361500:intron 20.0%
!! AAAAATAATAAATGCTGCAT+TGG - chr3_1:52055111-52055130 None:intergenic 20.0%
!! TGGATGTAATTCAATAAATA+AGG - chr3_1:52055147-52055166 None:intergenic 20.0%
!! AAATTAACTTCACTAGTTAT+TGG - chr3_1:52055381-52055400 None:intergenic 20.0%
!! AAGTTATAAATAAAAGGAAG+AGG - chr3_1:52055418-52055437 None:intergenic 20.0%
!! TATTATTACTTGGATAAATG+TGG - chr3_1:52055479-52055498 None:intergenic 20.0%
!! TAATAGAAAACAATTATTGG+TGG + chr3_1:52055494-52055513 Msa0361500:intron 20.0%
!! AATAGAAAACAATTATTGGT+GGG + chr3_1:52055495-52055514 Msa0361500:intron 20.0%
!! GTTTCACTAAAAAAAATATG+AGG - chr3_1:52055620-52055639 None:intergenic 20.0%
!!! TTTTGTAGTTTTCAAAGATA+GGG - chr3_1:52057326-52057345 None:intergenic 20.0%
!!! TTATGCGAAAAAAAATTTTC+CGG - chr3_1:52056034-52056053 None:intergenic 20.0%
!!! TTTTTGCGAAATAAAAAAAC+TGG + chr3_1:52056288-52056307 Msa0361500:intron 20.0%
!!! AATTTTAGTTCAAAAGAGAT+TGG - chr3_1:52056575-52056594 None:intergenic 20.0%
!!! AATAGGCTTAATATTACTTT+TGG + chr3_1:52057174-52057193 Msa0361500:intron 20.0%
!!! TTTTGTAGTTTTCAAAGATA+GGG + chr3_1:52057326-52057345 Msa0361500:intron 20.0%
!! ATAGGAGAACAATTAATAAT+AGG - chr3_1:52057402-52057421 None:intergenic 20.0%
!!! ACATATTTGTACACATTTTA+AGG + chr3_1:52057424-52057443 Msa0361500:intron 20.0%
!!! CATATTTGTACACATTTTAA+GGG + chr3_1:52057425-52057444 Msa0361500:intron 20.0%
!! AAAATAAAAAATTATTGGGC+GGG + chr3_1:52057712-52057731 Msa0361500:intron 20.0%
!!! AATTTTGTATGAATTACGTA+TGG + chr3_1:52057802-52057821 Msa0361500:intron 20.0%
!!! GTTTTAAAGTTGATGTTTTT+TGG + chr3_1:52057851-52057870 Msa0361500:intron 20.0%
!!! GTTTTTTGGTAATTAAGAAA+AGG + chr3_1:52057865-52057884 Msa0361500:intron 20.0%
!!! TTTATTTTGAGGATGTTTTT+TGG - chr3_1:52058375-52058394 None:intergenic 20.0%
!!! GATTAGATATTTTGTGTTTT+AGG + chr3_1:52058418-52058437 Msa0361500:intron 20.0%
!! ATAGAAATACTTGGTTTAAA+GGG - chr3_1:52058638-52058657 None:intergenic 20.0%
!! TATAGAAATACTTGGTTTAA+AGG - chr3_1:52058639-52058658 None:intergenic 20.0%
!! CATATAATAGTAGTATAGTT+AGG - chr3_1:52058745-52058764 None:intergenic 20.0%
!! TATATAATCAGGAACTAATT+TGG + chr3_1:52059680-52059699 Msa0361500:intron 20.0%
!!! TTTTTTTTTTTTTTGGTGAC+CGG + chr3_1:52059717-52059736 Msa0361500:intron 20.0%
!! TTCTTAAACTTGATAAAGAA+AGG + chr3_1:52060300-52060319 Msa0361500:five_prime_UTR 20.0%
!! TCTTAAACTTGATAAAGAAA+GGG + chr3_1:52060301-52060320 Msa0361500:five_prime_UTR 20.0%
!!! TAATATAATTTGTATACCTG+TGG - chr3_1:52060636-52060655 None:intergenic 20.0%
!!! TGATCATATACCTTTTTTTT+TGG - chr3_1:52060847-52060866 None:intergenic 20.0%
!!! AAAATGAGACATTTTAAGTT+TGG - chr3_1:52061047-52061066 None:intergenic 20.0%
!!! TTATAAACTTTACAGGTTTT+AGG - chr3_1:52061109-52061128 None:intergenic 20.0%
!! AAATATATAGGAACACAAAA+TGG + chr3_1:52061297-52061316 Msa0361500:intron 20.0%
!! TTCAATATTCAAACAAATTC+TGG + chr3_1:52061487-52061506 Msa0361500:intron 20.0%
!! ATGTAATTGAAGTTTCTAAA+CGG - chr3_1:52061699-52061718 None:intergenic 20.0%
!!! TAAATTTTGTTGAGGAAATT+CGG - chr3_1:52061722-52061741 None:intergenic 20.0%
!!! CAAGTAAATAAATTTTGTTG+AGG - chr3_1:52061730-52061749 None:intergenic 20.0%
!!! TTGTTTCTGTCATTAATTTA+AGG + chr3_1:52062923-52062942 Msa0361500:three_prime_UTR 20.0%
!! TCTCTTTTTCTTATGCTTTT+TGG + chr3_1:52054677-52054696 Msa0361500:five_prime_UTR 25.0%
! ATAAACTTAATTAGTTGGAG+TGG + chr3_1:52054837-52054856 Msa0361500:intron 25.0%
!! TCTAGTTTATAGCAAATCTA+TGG - chr3_1:52054925-52054944 None:intergenic 25.0%
!!! TTGGTAGTGACATAAATTAA+AGG + chr3_1:52054952-52054971 Msa0361500:intron 25.0%
!! AATGCTACTAATTTTACCAT+TGG + chr3_1:52055210-52055229 Msa0361500:intron 25.0%
!!! ATTAATTGTGTTGATTCCAA+TGG - chr3_1:52055229-52055248 None:intergenic 25.0%
! ACTCCTCCTTAATATTATTA+AGG + chr3_1:52055638-52055657 Msa0361500:intron 25.0%
! AAGCCTTAATAATATTAAGG+AGG - chr3_1:52055644-52055663 None:intergenic 25.0%
!! TTTGTAGTTTTCAAAGATAG+GGG - chr3_1:52057327-52057346 None:intergenic 25.0%
!! GTTTTGTAGTTTTCAAAGAT+AGG - chr3_1:52057325-52057344 None:intergenic 25.0%
! TTTCTTGCGAAATAAAAAAC+TGG - chr3_1:52056700-52056719 None:intergenic 25.0%
!! GTTTTGTAGTTTTCAAAGAT+AGG + chr3_1:52057325-52057344 Msa0361500:intron 25.0%
!! TTTGTAGTTTTCAAAGATAG+GGG + chr3_1:52057327-52057346 Msa0361500:intron 25.0%
! ATGTGTACAAATATGTGTAT+AGG - chr3_1:52057420-52057439 None:intergenic 25.0%
! GAGATATGCATTAATTATGA+TGG + chr3_1:52057584-52057603 Msa0361500:intron 25.0%
!!! TTTCTTAGTTTTACTAGGTT+TGG - chr3_1:52058098-52058117 None:intergenic 25.0%
!! TAAAAGGTTTTCATGTTACT+TGG - chr3_1:52058239-52058258 None:intergenic 25.0%
!! TAAAAAAGAAAATTGGTCTC+TGG + chr3_1:52058391-52058410 Msa0361500:intron 25.0%
!!! GTTTTGGTTAATGAAATGTT+AGG + chr3_1:52058480-52058499 Msa0361500:intron 25.0%
! AAAAAGGATGAAATAGTTGA+TGG + chr3_1:52058560-52058579 Msa0361500:intron 25.0%
! AAAAGGATGAAATAGTTGAT+GGG + chr3_1:52058561-52058580 Msa0361500:intron 25.0%
! TAGAAATACTTGGTTTAAAG+GGG - chr3_1:52058637-52058656 None:intergenic 25.0%
! AGGATGTTTATAGAAATACT+TGG - chr3_1:52058647-52058666 None:intergenic 25.0%
! AATAGTGATAGAAGATGTAA+TGG + chr3_1:52059092-52059111 Msa0361500:intron 25.0%
! CAATAATAAATTGACATCAC+TGG + chr3_1:52059120-52059139 Msa0361500:intron 25.0%
! AAGAAGAATGCATAATATAC+AGG + chr3_1:52059168-52059187 Msa0361500:intron 25.0%
! AGAAGAATGCATAATATACA+GGG + chr3_1:52059169-52059188 Msa0361500:intron 25.0%
! TAGAGAAAAAAGTAGGATAT+TGG - chr3_1:52059254-52059273 None:intergenic 25.0%
! TGCAAAATAGAGAAAAAAGT+AGG - chr3_1:52059261-52059280 None:intergenic 25.0%
! AAGATTGTTCTACAAAGATA+TGG - chr3_1:52059578-52059597 None:intergenic 25.0%
! TTTAACCACTCTATATAATC+AGG + chr3_1:52059669-52059688 Msa0361500:intron 25.0%
!!! ACATATATTTTTTTTGGTGG+TGG + chr3_1:52059834-52059853 Msa0361500:intron 25.0%
!! ACATTTAAGATGAATAAGTG+AGG - chr3_1:52060099-52060118 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG - chr3_1:52060132-52060151 None:intergenic 25.0%
!! TCTAATGATGCTTTTCTTTT+TGG - chr3_1:52060203-52060222 None:intergenic 25.0%
! ATTGTTATAATTGGATAGCT+TGG - chr3_1:52060342-52060361 None:intergenic 25.0%
! CTGATGCATATTGTTATAAT+TGG - chr3_1:52060351-52060370 None:intergenic 25.0%
! CAATTATAACAATATGCATC+AGG + chr3_1:52060349-52060368 Msa0361500:five_prime_UTR 25.0%
! ATATCCTCAACCAAAAAAAA+AGG + chr3_1:52060834-52060853 Msa0361500:intron 25.0%
!!! TATACCTTTTTTTTTGGTTG+AGG - chr3_1:52060841-52060860 None:intergenic 25.0%
!! TAAGCAAATTTGAAATTAGC+AGG + chr3_1:52061248-52061267 Msa0361500:intron 25.0%
!!! TTCATTTTGTTATGTAGGAA+TGG + chr3_1:52061879-52061898 Msa0361500:intron 25.0%
!! TTTGTTAATGCAGAACATTT+TGG - chr3_1:52061910-52061929 None:intergenic 25.0%
!! TTAACAAAAGCATGTGAATA+TGG + chr3_1:52061922-52061941 Msa0361500:CDS 25.0%
!!! TGAATTTTTTAGAGGTTTGT+TGG - chr3_1:52062122-52062141 None:intergenic 25.0%
! ATAGGGATATTACTATCTTT+GGG + chr3_1:52062637-52062656 Msa0361500:CDS 25.0%
ATTTGCCAATGAAACAACAT+GGG + chr3_1:52054707-52054726 Msa0361500:five_prime_UTR 30.0%
GTTTATAATACATTGGGAGA+GGG - chr3_1:52054823-52054842 None:intergenic 30.0%
AGTTTATAATACATTGGGAG+AGG - chr3_1:52054824-52054843 None:intergenic 30.0%
TCCACTAACTGCAATTAATA+AGG + chr3_1:52055176-52055195 Msa0361500:intron 30.0%
CCACTAACTGCAATTAATAA+GGG + chr3_1:52055177-52055196 Msa0361500:intron 30.0%
CTCGCAATATTAGTAGTTTA+AGG - chr3_1:52055277-52055296 None:intergenic 30.0%
AAACTACTAATATTGCGAGA+CGG + chr3_1:52055278-52055297 Msa0361500:intron 30.0%
! ATAATCATTTGAGAGTGTGA+TGG - chr3_1:52055325-52055344 None:intergenic 30.0%
!! TGATAATTTTAAGGAGACAG+AGG + chr3_1:52055441-52055460 Msa0361500:intron 30.0%
!! GATAATTTTAAGGAGACAGA+GGG + chr3_1:52055442-52055461 Msa0361500:intron 30.0%
! TTAAGGCTTAATAGCACTTT+TGG + chr3_1:52055655-52055674 Msa0361500:intron 30.0%
! GCAATTTTTGCAAACATAGA+GGG - chr3_1:52055681-52055700 None:intergenic 30.0%
GTTTGCAAAAATTGCGATTA+AGG + chr3_1:52055686-52055705 Msa0361500:intron 30.0%
! TTGTAGTTTTCAAAGATAGG+GGG - chr3_1:52057328-52057347 None:intergenic 30.0%
! AATAGGCTTAATAGCACTTT+TGG - chr3_1:52055865-52055884 None:intergenic 30.0%
TACGAACGAAAACAAAAATC+CGG + chr3_1:52056012-52056031 Msa0361500:intron 30.0%
!!! TTTAGTTTTCGTTGCAGTTT+TGG - chr3_1:52057294-52057313 None:intergenic 30.0%
TGCAACGAAAACTAAACATA+AGG + chr3_1:52057298-52057317 Msa0361500:intron 30.0%
GCAACGAAAACTAAACATAA+GGG + chr3_1:52057299-52057318 Msa0361500:intron 30.0%
CAACGAAAACTAAACATAAG+GGG + chr3_1:52057300-52057319 Msa0361500:intron 30.0%
GTTTGCAAAAATTGCGATTA+AGG - chr3_1:52055686-52055705 None:intergenic 30.0%
! ATCGCAATTTTTGCAAACAT+AGG + chr3_1:52057356-52057375 Msa0361500:intron 30.0%
! TCGCAATTTTTGCAAACATA+GGG + chr3_1:52057357-52057376 Msa0361500:intron 30.0%
! AATAGGCTTAATAGCACTTT+TGG - chr3_1:52055865-52055884 None:intergenic 30.0%
!! TGTACACATTTTAAGGGTTT+TGG + chr3_1:52057431-52057450 Msa0361500:intron 30.0%
TGTATCATATTTATCCAACG+AGG + chr3_1:52058013-52058032 Msa0361500:intron 30.0%
!! TAGTTTTACTAGGTTTGGTT+CGG - chr3_1:52058093-52058112 None:intergenic 30.0%
!!! TCGCTTTTCTTAGTTTTACT+AGG - chr3_1:52058103-52058122 None:intergenic 30.0%
! TTTCATGTTACTTGGTATGT+GGG - chr3_1:52058231-52058250 None:intergenic 30.0%
!! TTTTCATGTTACTTGGTATG+TGG - chr3_1:52058232-52058251 None:intergenic 30.0%
! TACTTCTAAGTTCTGTGTTT+TGG + chr3_1:52058464-52058483 Msa0361500:intron 30.0%
TTGGTTAATGAAATGTTAGG+CGG + chr3_1:52058483-52058502 Msa0361500:intron 30.0%
CTGAAGTCTAGTAAATGTTT+GGG + chr3_1:52058584-52058603 Msa0361500:intron 30.0%
AATAGTAGTATAGTTAGGGT+CGG - chr3_1:52058740-52058759 None:intergenic 30.0%
GAAGAATGCATAATATACAG+GGG + chr3_1:52059170-52059189 Msa0361500:intron 30.0%
ATTATGATCAATCTCTACGA+AGG - chr3_1:52059496-52059515 None:intergenic 30.0%
TAGTTCCTGATTATATAGAG+TGG - chr3_1:52059677-52059696 None:intergenic 30.0%
ATAATCAGGAACTAATTTGG+AGG + chr3_1:52059683-52059702 Msa0361500:intron 30.0%
CATAATATATGCAATGTTCG+AGG - chr3_1:52059751-52059770 None:intergenic 30.0%
TGCATAAAATATGCAAGTTC+CGG - chr3_1:52059874-52059893 None:intergenic 30.0%
AACCCTACATATATTATCAG+TGG - chr3_1:52060056-52060075 None:intergenic 30.0%
CATTGTTCATTTCTCAATTC+AGG + chr3_1:52060176-52060195 Msa0361500:intron 30.0%
!! AAGAAAAGCATCATTAGATG+TGG + chr3_1:52060205-52060224 Msa0361500:five_prime_UTR 30.0%
! TTTGCCATTGTTATTCAGTT+GGG - chr3_1:52060252-52060271 None:intergenic 30.0%
TTAAGAATATCATCGTGTGT+TGG - chr3_1:52060287-52060306 None:intergenic 30.0%
TAACAATATGCATCAGGAAT+TGG + chr3_1:52060355-52060374 Msa0361500:five_prime_UTR 30.0%
ATATGGTTACCATAAATAGC+TGG - chr3_1:52060398-52060417 None:intergenic 30.0%
GCTATTTATGGTAACCATAT+TGG + chr3_1:52060398-52060417 Msa0361500:five_prime_UTR 30.0%
!! GGAACTATTTTGTTGTAGTA+GGG + chr3_1:52060426-52060445 Msa0361500:five_prime_UTR 30.0%
!!! TTGTCTCTTGTTTTTGATAC+TGG + chr3_1:52060470-52060489 Msa0361500:five_prime_UTR 30.0%
CAATAAGAAGTAGACTTTGA+TGG - chr3_1:52060569-52060588 None:intergenic 30.0%
ATATTCCTTGACAAGAACTT+AGG + chr3_1:52060808-52060827 Msa0361500:intron 30.0%
ACATGTACACATGATAAAGA+GGG - chr3_1:52061559-52061578 None:intergenic 30.0%
AACATGTACACATGATAAAG+AGG - chr3_1:52061560-52061579 None:intergenic 30.0%
!! TCAATTGATGGTTTCCTTTT+CGG + chr3_1:52062018-52062037 Msa0361500:CDS 30.0%
! TGATATTGAAAGCTTGGTTT+TGG - chr3_1:52062316-52062335 None:intergenic 30.0%
ATACATGCTATGATCTTAGA+GGG + chr3_1:52062481-52062500 Msa0361500:CDS 30.0%
CCAAAGACAAAACTAATCTT+TGG - chr3_1:52062525-52062544 None:intergenic 30.0%
!!! CCAAAGATTAGTTTTGTCTT+TGG + chr3_1:52062522-52062541 Msa0361500:CDS 30.0%
!!! AAGATTAGTTTTGTCTTTGG+TGG + chr3_1:52062525-52062544 Msa0361500:CDS 30.0%
GATAGGGATATTACTATCTT+TGG + chr3_1:52062636-52062655 Msa0361500:CDS 30.0%
!!! AATTGTATTTTGATCGGTTG+TGG + chr3_1:52062821-52062840 Msa0361500:three_prime_UTR 30.0%
CATTTGCCAATGAAACAACA+TGG + chr3_1:52054706-52054725 Msa0361500:five_prime_UTR 35.0%
CCCTTATTAATTGCAGTTAG+TGG - chr3_1:52055180-52055199 None:intergenic 35.0%
!! AAATCTTATCTCGAGTTGGT+TGG - chr3_1:52055531-52055550 None:intergenic 35.0%
GACAAAATCTTATCTCGAGT+TGG - chr3_1:52055535-52055554 None:intergenic 35.0%
TCTAATGTCTCTTGACTTCT+TGG + chr3_1:52055579-52055598 Msa0361500:intron 35.0%
! CGCAATTTTTGCAAACATAG+AGG - chr3_1:52057358-52057377 None:intergenic 35.0%
CAACGAAAACGAAACATAAG+GGG - chr3_1:52055740-52055759 None:intergenic 35.0%
GCAACGAAAACGAAACATAA+GGG - chr3_1:52055741-52055760 None:intergenic 35.0%
TGCAACGAAAACGAAACATA+AGG - chr3_1:52055742-52055761 None:intergenic 35.0%
ACTAGGTCAAAAATGACCAT+GGG - chr3_1:52055773-52055792 None:intergenic 35.0%
! GTTTGCAAAAGTTGCGATTT+TGG - chr3_1:52055834-52055853 None:intergenic 35.0%
! ATCGCAACTTTTGCAAACAT+AGG + chr3_1:52055836-52055855 Msa0361500:intron 35.0%
! TCGCAACTTTTGCAAACATA+GGG + chr3_1:52055837-52055856 Msa0361500:intron 35.0%
CTGAGAAGCTTGAATTACAT+AGG + chr3_1:52056448-52056467 Msa0361500:intron 35.0%
! CGCAATTTTTGCAAACATAG+GGG + chr3_1:52057358-52057377 Msa0361500:intron 35.0%
! GCAATTTTTGCAAACATAGG+GGG + chr3_1:52057359-52057378 Msa0361500:intron 35.0%
! TTGGACCAACTTTGAGAAAA+TGG + chr3_1:52057450-52057469 Msa0361500:intron 35.0%
! GCATTTGACACACTATGTTT+TGG - chr3_1:52057653-52057672 None:intergenic 35.0%
!! TATTTTTGTCACCCCTAGTT+CGG - chr3_1:52057738-52057757 None:intergenic 35.0%
AAGTATCTGTGGGTATTCAT+GGG - chr3_1:52057937-52057956 None:intergenic 35.0%
ATCATATTTATCCAACGAGG+CGG + chr3_1:52058016-52058035 Msa0361500:intron 35.0%
GGAATGATTATGAAGCTCTT+TGG - chr3_1:52058172-52058191 None:intergenic 35.0%
! AAGAAAATTGGTCTCTGGAA+AGG + chr3_1:52058396-52058415 Msa0361500:intron 35.0%
TGTGAAAATGAAATGCTGCT+GGG + chr3_1:52058532-52058551 Msa0361500:intron 35.0%
!!! ATGCTGCTGGGTTTTAAAAA+AGG + chr3_1:52058544-52058563 Msa0361500:intron 35.0%
GCTGAAGTCTAGTAAATGTT+TGG + chr3_1:52058583-52058602 Msa0361500:intron 35.0%
GCTCAAAAGAAAATATGGAG+AGG - chr3_1:52058667-52058686 None:intergenic 35.0%
TAGGGGCTCAAAAGAAAATA+TGG - chr3_1:52058672-52058691 None:intergenic 35.0%
AACGAGTACACATTGTATGA+TGG - chr3_1:52058966-52058985 None:intergenic 35.0%
CCATATGCTTATAATAGCGA+CGG + chr3_1:52059046-52059065 Msa0361500:intron 35.0%
GCGTAATTGTTAGAAACTCA+GGG - chr3_1:52059232-52059251 None:intergenic 35.0%
GTGCAGAAGTTAATTATCCA+GGG - chr3_1:52059286-52059305 None:intergenic 35.0%
AATATCATCCTTTGAGTGCA+AGG - chr3_1:52059308-52059327 None:intergenic 35.0%
TTGGAGAAATTACGTCAGTT+TGG - chr3_1:52059370-52059389 None:intergenic 35.0%
GAAGCATAAATCACTCAAGT+TGG - chr3_1:52059409-52059428 None:intergenic 35.0%
TGAGCTTAGCTTATTTGGTA+GGG - chr3_1:52059786-52059805 None:intergenic 35.0%
!!! ATATTTTTTTTGGTGGTGGC+CGG + chr3_1:52059838-52059857 Msa0361500:intron 35.0%
CATAAAATATGCAAGTTCCG+GGG - chr3_1:52059872-52059891 None:intergenic 35.0%
GCATAAAATATGCAAGTTCC+GGG - chr3_1:52059873-52059892 None:intergenic 35.0%
ACGCCACTGATAATATATGT+AGG + chr3_1:52060050-52060069 Msa0361500:intron 35.0%
CGCCACTGATAATATATGTA+GGG + chr3_1:52060051-52060070 Msa0361500:intron 35.0%
GAGAAATGAACAATGTTCAG+TGG - chr3_1:52060171-52060190 None:intergenic 35.0%
! TTGTTATTCAGTTGGGAACA+TGG - chr3_1:52060245-52060264 None:intergenic 35.0%
TGTTCCCAACTGAATAACAA+TGG + chr3_1:52060245-52060264 Msa0361500:five_prime_UTR 35.0%
! CTTTGCCATTGTTATTCAGT+TGG - chr3_1:52060253-52060272 None:intergenic 35.0%
GCAAAGTTACCAGCTATTTA+TGG + chr3_1:52060386-52060405 Msa0361500:five_prime_UTR 35.0%
TATGGTAACCATATTGGAAC+AGG + chr3_1:52060404-52060423 Msa0361500:five_prime_UTR 35.0%
ATGGTAACCATATTGGAACA+GGG + chr3_1:52060405-52060424 Msa0361500:five_prime_UTR 35.0%
AATAGTTCCCTGTTCCAATA+TGG - chr3_1:52060415-52060434 None:intergenic 35.0%
!! GGGAACTATTTTGTTGTAGT+AGG + chr3_1:52060425-52060444 Msa0361500:five_prime_UTR 35.0%
!! TATTTTGTTGTAGTAGGGCT+TGG + chr3_1:52060431-52060450 Msa0361500:five_prime_UTR 35.0%
! ACAAGAGACAAGTTCCTTTT+AGG - chr3_1:52060461-52060480 None:intergenic 35.0%
TACCAGATATGCAAGTGATT+TGG - chr3_1:52060676-52060695 None:intergenic 35.0%
ATATGCCTAAGTTCTTGTCA+AGG - chr3_1:52060816-52060835 None:intergenic 35.0%
CATGTACACATGATAAAGAG+GGG - chr3_1:52061558-52061577 None:intergenic 35.0%
! GTTAATGCAGAACATTTTGG+AGG - chr3_1:52061907-52061926 None:intergenic 35.0%
TGGAGTTACCGATAATAACA+AGG + chr3_1:52062200-52062219 Msa0361500:CDS 35.0%
AGTTACCGATAATAACAAGG+TGG + chr3_1:52062203-52062222 Msa0361500:CDS 35.0%
! GGATAAGGGAGTGTATTTAA+CGG - chr3_1:52062238-52062257 None:intergenic 35.0%
TCACGTAGTAATTCCTTCTA+CGG + chr3_1:52062264-52062283 Msa0361500:CDS 35.0%
GATACATGCTATGATCTTAG+AGG + chr3_1:52062480-52062499 Msa0361500:CDS 35.0%
!!! ATTAGTTTTGTCTTTGGTGG+TGG + chr3_1:52062528-52062547 Msa0361500:CDS 35.0%
CTAGAGGTTGTTTATGATGT+TGG + chr3_1:52062678-52062697 Msa0361500:CDS 35.0%
AAGATTGGGTTTCGTTCAAA+TGG + chr3_1:52062708-52062727 Msa0361500:CDS 35.0%
ATCCAAGAAATCAAGCAACA+TGG + chr3_1:52062783-52062802 Msa0361500:three_prime_UTR 35.0%
! TTCCATGTTGCTTGATTTCT+TGG - chr3_1:52062788-52062807 None:intergenic 35.0%
GGTTGTGGAAATTGAACTAT+TGG + chr3_1:52062836-52062855 Msa0361500:three_prime_UTR 35.0%
! ACTTGAATATGTGTTGTTGC+TGG + chr3_1:52062861-52062880 Msa0361500:three_prime_UTR 35.0%
!! TTCCTCCCATGTTGTTTCAT+TGG - chr3_1:52054715-52054734 None:intergenic 40.0%
TACATTGGGAGAGGGAAATA+TGG - chr3_1:52054815-52054834 None:intergenic 40.0%
CAGTTAGTGGAGTAGTTAGT+TGG - chr3_1:52055167-52055186 None:intergenic 40.0%
! AGTAGTTTAAGGTTTGTGCG+CGG - chr3_1:52055266-52055285 None:intergenic 40.0%
TACTAATATTGCGAGACGGA+GGG + chr3_1:52055282-52055301 Msa0361500:intron 40.0%
TAGGTCAAAAATGACCATGG+GGG - chr3_1:52055771-52055790 None:intergenic 40.0%
CTAGGTCAAAAATGACCATG+GGG - chr3_1:52055772-52055791 None:intergenic 40.0%
GACTAGGTCAAAAATGACCA+TGG - chr3_1:52055774-52055793 None:intergenic 40.0%
CACCCAAATCACTTATGTGA+GGG + chr3_1:52055807-52055826 Msa0361500:intron 40.0%
ACCCAAATCACTTATGTGAG+GGG + chr3_1:52055808-52055827 Msa0361500:intron 40.0%
! CGCAACTTTTGCAAACATAG+GGG + chr3_1:52055838-52055857 Msa0361500:intron 40.0%
! GCAACTTTTGCAAACATAGG+GGG + chr3_1:52055839-52055858 Msa0361500:intron 40.0%
TCGCAACTTTGGCAAACATA+GGG - chr3_1:52057202-52057221 None:intergenic 40.0%
ATCGCAACTTTGGCAAACAT+AGG - chr3_1:52057203-52057222 None:intergenic 40.0%
! GTTTGCCAAAGTTGCGATTT+TGG + chr3_1:52057205-52057224 Msa0361500:intron 40.0%
ACCAGGTCAAAAATGACCAT+GGG + chr3_1:52057266-52057285 Msa0361500:intron 40.0%
CGAAAACTAAACATAAGGGG+CGG + chr3_1:52057303-52057322 Msa0361500:intron 40.0%
! GGGATCCATTTTCTCAAAGT+TGG - chr3_1:52057458-52057477 None:intergenic 40.0%
CATGTGTTTCAATTTACCCG+CGG - chr3_1:52057768-52057787 None:intergenic 40.0%
! GAAGTATCTGTGGGTATTCA+TGG - chr3_1:52057938-52057957 None:intergenic 40.0%
TCATATTTATCCAACGAGGC+GGG + chr3_1:52058017-52058036 Msa0361500:intron 40.0%
TATCATACTATCCGTACCCA+TGG + chr3_1:52058046-52058065 Msa0361500:intron 40.0%
GTGTGAAAATGAAATGCTGC+TGG + chr3_1:52058531-52058550 Msa0361500:intron 40.0%
! TTTTGAGCCCCTACAATCAT+GGG + chr3_1:52058679-52058698 Msa0361500:intron 40.0%
AACAGCATGATGAAGAAGCA+AGG - chr3_1:52058943-52058962 None:intergenic 40.0%
CCGTCGCTATTATAAGCATA+TGG - chr3_1:52059049-52059068 None:intergenic 40.0%
GAATGCATAATATACAGGGG+CGG + chr3_1:52059173-52059192 Msa0361500:intron 40.0%
GGCGTAATTGTTAGAAACTC+AGG - chr3_1:52059233-52059252 None:intergenic 40.0%
! TTTCTCTATTTTGCACACCC+TGG + chr3_1:52059266-52059285 Msa0361500:intron 40.0%
GGTGCAGAAGTTAATTATCC+AGG - chr3_1:52059287-52059306 None:intergenic 40.0%
TGGTCAAACAAGATGCAAGT+TGG - chr3_1:52059389-52059408 None:intergenic 40.0%
! TCTCTACGAAGGTCTCTTTT+TGG - chr3_1:52059485-52059504 None:intergenic 40.0%
AATGTTCGAGGTTCAAACTC+CGG - chr3_1:52059739-52059758 None:intergenic 40.0%
GTGAGCTTAGCTTATTTGGT+AGG - chr3_1:52059787-52059806 None:intergenic 40.0%
!!! TATTTTTTTTGGTGGTGGCC+GGG + chr3_1:52059839-52059858 Msa0361500:intron 40.0%
ATATTATCAGTGGCGTATCC+AGG - chr3_1:52060046-52060065 None:intergenic 40.0%
TTAGATGTGGTACACAAGCA+TGG + chr3_1:52060218-52060237 Msa0361500:five_prime_UTR 40.0%
TAGATGTGGTACACAAGCAT+GGG + chr3_1:52060219-52060238 Msa0361500:five_prime_UTR 40.0%
! ATACTGGTAGTGATCTCACT+TGG + chr3_1:52060486-52060505 Msa0361500:five_prime_UTR 40.0%
! TCATCTTGCTGTGTGTAACA+AGG - chr3_1:52060536-52060555 None:intergenic 40.0%
ACTCAACTATCTTCATCCAC+AGG + chr3_1:52060617-52060636 Msa0361500:CDS 40.0%
CACCAAATCACTTGCATATC+TGG + chr3_1:52060671-52060690 Msa0361500:intron 40.0%
AATCCTTTAACCCAACCAAG+TGG + chr3_1:52061524-52061543 Msa0361500:intron 40.0%
! AGTATCCTTTGGAGAAGGAT+TGG - chr3_1:52061963-52061982 None:intergenic 40.0%
AAACCATCAATTGAGTCCGT+TGG - chr3_1:52062012-52062031 None:intergenic 40.0%
! ATGGTTTCCTTTTCGGTTGT+GGG + chr3_1:52062025-52062044 Msa0361500:CDS 40.0%
CAATACAACCAAGGTCTGTT+CGG + chr3_1:52062048-52062067 Msa0361500:CDS 40.0%
! GTTTGTTGGACGAAAGAGAT+TGG - chr3_1:52062108-52062127 None:intergenic 40.0%
TATCGGTAACTCCAAATGTG+AGG - chr3_1:52062194-52062213 None:intergenic 40.0%
!! GTTGGCCACCTTGTTATTAT+CGG - chr3_1:52062211-52062230 None:intergenic 40.0%
AGTGTATTTAACGGCGTTGT+TGG - chr3_1:52062229-52062248 None:intergenic 40.0%
CTACGTGAGATTGTGGATAA+GGG - chr3_1:52062252-52062271 None:intergenic 40.0%
ACTACGTGAGATTGTGGATA+AGG - chr3_1:52062253-52062272 None:intergenic 40.0%
GGAATTACTACGTGAGATTG+TGG - chr3_1:52062259-52062278 None:intergenic 40.0%
GGAGGATGATATTGAAAGCT+TGG - chr3_1:52062322-52062341 None:intergenic 40.0%
! TCATCCTCCATTTTCTCCTT+CGG + chr3_1:52062333-52062352 Msa0361500:CDS 40.0%
ACTCTGGTACTGTCATTACA+CGG + chr3_1:52062370-52062389 Msa0361500:CDS 40.0%
TCATGCATTCCGGAAAGAAA+TGG + chr3_1:52062422-52062441 Msa0361500:CDS 40.0%
GATACTTCGCCATTTCTTTC+CGG - chr3_1:52062434-52062453 None:intergenic 40.0%
ATGCTATGATCTTAGAGGGA+GGG + chr3_1:52062485-52062504 Msa0361500:CDS 40.0%
! GCAAGTTTGTTTGGCATTTG+CGG + chr3_1:52062602-52062621 Msa0361500:CDS 40.0%
TGTGCAACAAAGAACACTAG+AGG + chr3_1:52062662-52062681 Msa0361500:CDS 40.0%
GAGGTTGTTTATGATGTTGG+TGG + chr3_1:52062681-52062700 Msa0361500:CDS 40.0%
! GTTGTTTATGATGTTGGTGG+TGG + chr3_1:52062684-52062703 Msa0361500:CDS 40.0%
!! ATGTTGGTGGTGGTAAGATT+GGG + chr3_1:52062694-52062713 Msa0361500:CDS 40.0%
TGCCAATGAAACAACATGGG+AGG + chr3_1:52054710-52054729 Msa0361500:five_prime_UTR 45.0%
GAGAGCTGATGCTAACAAGA+TGG - chr3_1:52054743-52054762 None:intergenic 45.0%
TCTTCCTGCAGCTCTACAAA+AGG + chr3_1:52054774-52054793 Msa0361500:five_prime_UTR 45.0%
! TTGACCTTTTGTAGAGCTGC+AGG - chr3_1:52054781-52054800 None:intergenic 45.0%
AGGTTTGTGCGCGGTTATTA+AGG - chr3_1:52055257-52055276 None:intergenic 45.0%
CTACTAATATTGCGAGACGG+AGG + chr3_1:52055281-52055300 Msa0361500:intron 45.0%
GCACCCAAATCACTTATGTG+AGG + chr3_1:52055806-52055825 Msa0361500:intron 45.0%
GCCCCTCACATAAGTGATTT+GGG - chr3_1:52055812-52055831 None:intergenic 45.0%
GAGATTGGAAGAGCAACTTG+AGG - chr3_1:52056560-52056579 None:intergenic 45.0%
GCAACTTTGGCAAACATAGG+GGG - chr3_1:52057200-52057219 None:intergenic 45.0%
CGCAACTTTGGCAAACATAG+GGG - chr3_1:52057201-52057220 None:intergenic 45.0%
ACCCACATCACTTATGTGAG+GGG - chr3_1:52057231-52057250 None:intergenic 45.0%
CACCCACATCACTTATGTGA+GGG - chr3_1:52057232-52057251 None:intergenic 45.0%
GACCAGGTCAAAAATGACCA+TGG + chr3_1:52057265-52057284 Msa0361500:intron 45.0%
CCAGGTCAAAAATGACCATG+GGG + chr3_1:52057267-52057286 Msa0361500:intron 45.0%
CAGGTCAAAAATGACCATGG+GGG + chr3_1:52057268-52057287 Msa0361500:intron 45.0%
GACAAAAATACCCATGACCG+CGG + chr3_1:52057748-52057767 Msa0361500:intron 45.0%
ACAAAAATACCCATGACCGC+GGG + chr3_1:52057749-52057768 Msa0361500:intron 45.0%
TTCAATTTACCCGCGGTCAT+GGG - chr3_1:52057761-52057780 None:intergenic 45.0%
TTTCAATTTACCCGCGGTCA+TGG - chr3_1:52057762-52057781 None:intergenic 45.0%
!! GCGGGTATTGAAGTATCTGT+GGG - chr3_1:52057947-52057966 None:intergenic 45.0%
CACAGATACTTCAATACCCG+CGG + chr3_1:52057946-52057965 Msa0361500:intron 45.0%
ACAGATACTTCAATACCCGC+GGG + chr3_1:52057947-52057966 Msa0361500:intron 45.0%
! CTTTTGAGCCCCTACAATCA+TGG + chr3_1:52058678-52058697 Msa0361500:intron 45.0%
CCTCGTGAGCTTAGCTTATT+TGG - chr3_1:52059791-52059810 None:intergenic 45.0%
CCAAATAAGCTAAGCTCACG+AGG + chr3_1:52059788-52059807 Msa0361500:intron 45.0%
!!! ATTTTTTTTGGTGGTGGCCG+GGG + chr3_1:52059840-52059859 Msa0361500:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr3_1:52059901-52059920 None:intergenic 45.0%
! TAGGGCTTGGTACTCCTAAA+AGG + chr3_1:52060444-52060463 Msa0361500:five_prime_UTR 45.0%
AGTCCACTTGGTTGGGTTAA+AGG - chr3_1:52061530-52061549 None:intergenic 45.0%
GTACACATGATAAAGAGGGG+TGG - chr3_1:52061555-52061574 None:intergenic 45.0%
AGTGACCAATCCTTCTCCAA+AGG + chr3_1:52061955-52061974 Msa0361500:CDS 45.0%
! GCTGAAGTATCCTTTGGAGA+AGG - chr3_1:52061968-52061987 None:intergenic 45.0%
! TTCACGGCTGAAGTATCCTT+TGG - chr3_1:52061974-52061993 None:intergenic 45.0%
! GCGTTATGGTTAGTCGTTCA+CGG - chr3_1:52061990-52062009 None:intergenic 45.0%
ACGACTAACCATAACGCCAA+CGG + chr3_1:52061993-52062012 Msa0361500:CDS 45.0%
AATTGAGTCCGTTGGCGTTA+TGG - chr3_1:52062004-52062023 None:intergenic 45.0%
! GATGGTTTCCTTTTCGGTTG+TGG + chr3_1:52062024-52062043 Msa0361500:CDS 45.0%
TGTATTGCCCACAACCGAAA+AGG - chr3_1:52062035-52062054 None:intergenic 45.0%
AAGAGATTGGATGACGACCA+AGG - chr3_1:52062095-52062114 None:intergenic 45.0%
GTTATTGGCCACCTCACATT+TGG + chr3_1:52062180-52062199 Msa0361500:CDS 45.0%
AACGATGTCAAGACCGTAGA+AGG - chr3_1:52062280-52062299 None:intergenic 45.0%
TTCTACGGTCTTGACATCGT+TGG + chr3_1:52062279-52062298 Msa0361500:CDS 45.0%
GACAGTACCAGAGTCAATGA+TGG - chr3_1:52062364-52062383 None:intergenic 45.0%
CATGCTATGATCTTAGAGGG+AGG + chr3_1:52062484-52062503 Msa0361500:CDS 45.0%
TCTTAGAGGGAGGGAAAATG+TGG + chr3_1:52062494-52062513 Msa0361500:CDS 45.0%
! TACTTTTCCCTGTGAGTTCG+AGG + chr3_1:52062580-52062599 Msa0361500:CDS 45.0%
AAACTTGCCTCGAACTCACA+GGG - chr3_1:52062590-52062609 None:intergenic 45.0%
! GAGTTCGAGGCAAGTTTGTT+TGG + chr3_1:52062593-52062612 Msa0361500:CDS 45.0%
TTGCGGCGAATAGAGATGAT+AGG + chr3_1:52062619-52062638 Msa0361500:CDS 45.0%
TGCGGCGAATAGAGATGATA+GGG + chr3_1:52062620-52062639 Msa0361500:CDS 45.0%
!! GATGTTGGTGGTGGTAAGAT+TGG + chr3_1:52062693-52062712 Msa0361500:CDS 45.0%
TTGTTGCTGGCAATCGTTCA+TGG + chr3_1:52062874-52062893 Msa0361500:three_prime_UTR 45.0%
!!! CATTAAATTTTTTTTTTTTT+TGG + chr3_1:52059710-52059729 Msa0361500:intron 5.0%
!!! TAATATACATATATTTTTTT+TGG + chr3_1:52059828-52059847 Msa0361500:intron 5.0%
!!! CTTTTATTTTTTTATTTTTT+TGG + chr3_1:52060904-52060923 Msa0361500:intron 5.0%
!!! TTTTATTAATAATAAAAACA+AGG - chr3_1:52060973-52060992 None:intergenic 5.0%
!!! TGTTTTTATTATTAATAAAA+TGG + chr3_1:52060973-52060992 Msa0361500:intron 5.0%
!! TTAAAATTAAATAAAATCAA+GGG + chr3_1:52061147-52061166 Msa0361500:intron 5.0%
GTAGAGCTGCAGGAAGATGA+TGG - chr3_1:52054771-52054790 None:intergenic 50.0%
TGACCTAGTCCACGTTGACA+TGG + chr3_1:52055784-52055803 Msa0361500:intron 50.0%
! ATTTGGGTGCCATGTCAACG+TGG - chr3_1:52055796-52055815 None:intergenic 50.0%
GGCCCCTCACATAAGTGATT+TGG - chr3_1:52055813-52055832 None:intergenic 50.0%
AGGGGCCAAAATCGCAACTT+TGG - chr3_1:52055826-52055845 None:intergenic 50.0%
GCCCCTCACATAAGTGATGT+GGG + chr3_1:52057227-52057246 Msa0361500:intron 50.0%
GCACCCACATCACTTATGTG+AGG - chr3_1:52057233-52057252 None:intergenic 50.0%
!!! CCCCATGGTCATTTTTGACC+TGG - chr3_1:52055769-52055788 None:intergenic 50.0%
!! CGCGGGTATTGAAGTATCTG+TGG - chr3_1:52057948-52057967 None:intergenic 50.0%
TTTATCCAACGAGGCGGGAA+CGG + chr3_1:52058022-52058041 Msa0361500:intron 50.0%
TCAACGGGTATCCATGGGTA+CGG - chr3_1:52058060-52058079 None:intergenic 50.0%
GGATGTCAACGGGTATCCAT+GGG - chr3_1:52058065-52058084 None:intergenic 50.0%
!! ACTAGGTTTGGTTCGGCCTA+GGG - chr3_1:52058086-52058105 None:intergenic 50.0%
!! TACTAGGTTTGGTTCGGCCT+AGG - chr3_1:52058087-52058106 None:intergenic 50.0%
CCTAGTGCCCATGATTGTAG+GGG - chr3_1:52058689-52058708 None:intergenic 50.0%
GCCTAGTGCCCATGATTGTA+GGG - chr3_1:52058690-52058709 None:intergenic 50.0%
TAATATACAGGGGCGGACCT+AGG + chr3_1:52059180-52059199 Msa0361500:intron 50.0%
CTTCTGCACCTTGCACTCAA+AGG + chr3_1:52059297-52059316 Msa0361500:intron 50.0%
GTGTAACAAGGACGAGCACA+AGG - chr3_1:52060524-52060543 None:intergenic 50.0%
GGTGGATAGTCCACTTGGTT+GGG - chr3_1:52061537-52061556 None:intergenic 50.0%
! ACGCCAACGGACTCAATTGA+TGG + chr3_1:52062006-52062025 Msa0361500:CDS 50.0%
GGTTGTGGGCAATACAACCA+AGG + chr3_1:52062039-52062058 Msa0361500:CDS 50.0%
ACGACCAAGGCCTAATATGC+CGG - chr3_1:52062082-52062101 None:intergenic 50.0%
CCAATAACGCTGGAAGTGGA+AGG - chr3_1:52062168-52062187 None:intergenic 50.0%
CCTTCCACTTCCAGCGTTAT+TGG + chr3_1:52062165-52062184 Msa0361500:CDS 50.0%
CGGTAACTCCAAATGTGAGG+TGG - chr3_1:52062191-52062210 None:intergenic 50.0%
! TCCTCCATTTTCTCCTTCGG+TGG + chr3_1:52062336-52062355 Msa0361500:CDS 50.0%
TGCATGACGAAGGCTAGCAT+AGG - chr3_1:52062409-52062428 None:intergenic 50.0%
! CTAGCCTTCGTCATGCATTC+CGG + chr3_1:52062412-52062431 Msa0361500:CDS 50.0%
CTTTCCGGAATGCATGACGA+AGG - chr3_1:52062419-52062438 None:intergenic 50.0%
! ATTTGAAACCCCGAAGCAGC+TGG - chr3_1:52062456-52062475 None:intergenic 50.0%
CAAACTTGCCTCGAACTCAC+AGG - chr3_1:52062591-52062610 None:intergenic 50.0%
! TCGTTGCAGTTTTGCCCCCA+TGG + chr3_1:52055754-52055773 Msa0361500:intron 55.0%
GTGCCATGTCAACGTGGACT+AGG - chr3_1:52055790-52055809 None:intergenic 55.0%
GGCCCCTCACATAAGTGATG+TGG + chr3_1:52057226-52057245 Msa0361500:intron 55.0%
ATTATTGGGCGGGCCGAACT+AGG + chr3_1:52057722-52057741 Msa0361500:intron 55.0%
TTATTGGGCGGGCCGAACTA+GGG + chr3_1:52057723-52057742 Msa0361500:intron 55.0%
TTATCCAACGAGGCGGGAAC+GGG + chr3_1:52058023-52058042 Msa0361500:intron 55.0%
GGGATGTCAACGGGTATCCA+TGG - chr3_1:52058066-52058085 None:intergenic 55.0%
GGATACCCGTTGACATCCCT+AGG + chr3_1:52058067-52058086 Msa0361500:intron 55.0%
TTCGGCCTAGGGATGTCAAC+GGG - chr3_1:52058075-52058094 None:intergenic 55.0%
GTTCGGCCTAGGGATGTCAA+CGG - chr3_1:52058076-52058095 None:intergenic 55.0%
!! GCGGCGAAAATGAAAGCGCT+GGG + chr3_1:52058502-52058521 Msa0361500:intron 55.0%
CCCCTACAATCATGGGCACT+AGG + chr3_1:52058686-52058705 Msa0361500:intron 55.0%
GGCCTAGTGCCCATGATTGT+AGG - chr3_1:52058691-52058710 None:intergenic 55.0%
CTAGGCATAGGTCGGAGTTG+GGG - chr3_1:52058715-52058734 None:intergenic 55.0%
CCTAGGCATAGGTCGGAGTT+GGG - chr3_1:52058716-52058735 None:intergenic 55.0%
CCAACTCCGACCTATGCCTA+GGG + chr3_1:52058714-52058733 Msa0361500:intron 55.0%
GTATAGTTAGGGTCGGCCCT+AGG - chr3_1:52058733-52058752 None:intergenic 55.0%
GCACACTCTCACCAACACCT+AGG - chr3_1:52059200-52059219 None:intergenic 55.0%
AAGTTCCGGGGTTCAAACCC+CGG - chr3_1:52059860-52059879 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr3_1:52059906-52059925 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr3_1:52059903-52059922 Msa0361500:intron 55.0%
TATCCAGGACCCTAGGTCAG+GGG - chr3_1:52060031-52060050 None:intergenic 55.0%
GTATCCAGGACCCTAGGTCA+GGG - chr3_1:52060032-52060051 None:intergenic 55.0%
GGGTGGATAGTCCACTTGGT+TGG - chr3_1:52061538-52061557 None:intergenic 55.0%
AGAGGGGTGGATAGTCCACT+TGG - chr3_1:52061542-52061561 None:intergenic 55.0%
CAGACATGCCGAACAGACCT+TGG - chr3_1:52062059-52062078 None:intergenic 55.0%
GGCATGTCTGCCGGCATATT+AGG + chr3_1:52062069-52062088 Msa0361500:CDS 55.0%
TCTGCCGGCATATTAGGCCT+TGG + chr3_1:52062075-52062094 Msa0361500:CDS 55.0%
GTGGCCAATAACGCTGGAAG+TGG - chr3_1:52062172-52062191 None:intergenic 55.0%
TGTGAGGTGGCCAATAACGC+TGG - chr3_1:52062178-52062197 None:intergenic 55.0%
GCCACCGAAGGAGAAAATGG+AGG - chr3_1:52062340-52062359 None:intergenic 55.0%
CGAAGGCTAGCATAGGCAGA+CGG - chr3_1:52062402-52062421 None:intergenic 55.0%
! GGCGAAGTATCCAGCTGCTT+CGG + chr3_1:52062443-52062462 Msa0361500:CDS 55.0%
! GCGAAGTATCCAGCTGCTTC+GGG + chr3_1:52062444-52062463 Msa0361500:CDS 55.0%
! CGAAGTATCCAGCTGCTTCG+GGG + chr3_1:52062445-52062464 Msa0361500:CDS 55.0%
!! CTTTGGTGGTGGTGTCACAG+TGG + chr3_1:52062539-52062558 Msa0361500:CDS 55.0%
!! ACAGTGGAGCTTGGTGCACA+CGG + chr3_1:52062555-52062574 Msa0361500:CDS 55.0%
! ATGTGGGTGCCATGTCAGCG+TGG + chr3_1:52057243-52057262 Msa0361500:intron 60.0%
TGACCTGGTCCACGCTGACA+TGG - chr3_1:52057255-52057274 None:intergenic 60.0%
!! CGTTGCAGTTTTGGCCCCCA+TGG - chr3_1:52057285-52057304 None:intergenic 60.0%
TATTGGGCGGGCCGAACTAG+GGG + chr3_1:52057724-52057743 Msa0361500:intron 60.0%
CCATTGTACGGGTAACCCGC+GGG - chr3_1:52057965-52057984 None:intergenic 60.0%
CCCATTGTACGGGTAACCCG+CGG - chr3_1:52057966-52057985 None:intergenic 60.0%
! CCGCGGGTTACCCGTACAAT+GGG + chr3_1:52057963-52057982 Msa0361500:intron 60.0%
CGCGTGGGTACCCATTGTAC+GGG - chr3_1:52057976-52057995 None:intergenic 60.0%
CCGCGTGGGTACCCATTGTA+CGG - chr3_1:52057977-52057996 None:intergenic 60.0%
CCGTACAATGGGTACCCACG+CGG + chr3_1:52057974-52057993 Msa0361500:intron 60.0%
CGTACAATGGGTACCCACGC+GGG + chr3_1:52057975-52057994 Msa0361500:intron 60.0%
AATGGGTACCCACGCGGGTA+TGG + chr3_1:52057980-52057999 Msa0361500:intron 60.0%
ATGGGTACCCACGCGGGTAT+GGG + chr3_1:52057981-52058000 Msa0361500:intron 60.0%
! GGCGGCGAAAATGAAAGCGC+TGG + chr3_1:52058501-52058520 Msa0361500:intron 60.0%
CCCAACTCCGACCTATGCCT+AGG + chr3_1:52058713-52058732 Msa0361500:intron 60.0%
CCCTAGGCATAGGTCGGAGT+TGG - chr3_1:52058717-52058736 None:intergenic 60.0%
TTAGGGTCGGCCCTAGGCAT+AGG - chr3_1:52058727-52058746 None:intergenic 60.0%
AAGTTCGCACCCCCTGACCT+AGG + chr3_1:52060018-52060037 Msa0361500:intron 60.0%
AGTTCGCACCCCCTGACCTA+GGG + chr3_1:52060019-52060038 Msa0361500:intron 60.0%
ATCCAGGACCCTAGGTCAGG+GGG - chr3_1:52060030-52060049 None:intergenic 60.0%
CGTATCCAGGACCCTAGGTC+AGG - chr3_1:52060033-52060052 None:intergenic 60.0%
AGTGGCGTATCCAGGACCCT+AGG - chr3_1:52060038-52060057 None:intergenic 60.0%
GGTCTGTTCGGCATGTCTGC+CGG + chr3_1:52062060-52062079 Msa0361500:CDS 60.0%
GGCGCCACCGAAGGAGAAAA+TGG - chr3_1:52062343-52062362 None:intergenic 60.0%
! GTCAATGATGGCGCCACCGA+AGG - chr3_1:52062352-52062371 None:intergenic 60.0%
!! GGTGGCGCCATCATTGACTC+TGG + chr3_1:52062354-52062373 Msa0361500:CDS 60.0%
AGGCTAGCATAGGCAGACGG+CGG - chr3_1:52062399-52062418 None:intergenic 60.0%
!! GGTGGTGTCACAGTGGAGCT+TGG + chr3_1:52062546-52062565 Msa0361500:CDS 60.0%
!! CAGTGGAGCTTGGTGCACAC+GGG + chr3_1:52062556-52062575 Msa0361500:CDS 60.0%
!! AGTGGAGCTTGGTGCACACG+GGG + chr3_1:52062557-52062576 Msa0361500:CDS 60.0%
GTGCCATGTCAGCGTGGACC+AGG + chr3_1:52057249-52057268 Msa0361500:intron 65.0%
! CCCGCGGGTTACCCGTACAA+TGG + chr3_1:52057962-52057981 Msa0361500:intron 65.0%
TGGGTACCCACGCGGGTATG+GGG + chr3_1:52057982-52058001 Msa0361500:intron 65.0%
TGTCTGCCCCATACCCGCGT+GGG - chr3_1:52057991-52058010 None:intergenic 65.0%
GATACCCGTTCCCGCCTCGT+TGG - chr3_1:52058030-52058049 None:intergenic 65.0%
GGCATAGGTCGGAGTTGGGG+CGG - chr3_1:52058712-52058731 None:intergenic 65.0%
GGTCGGCCCTAGGCATAGGT+CGG - chr3_1:52058723-52058742 None:intergenic 65.0%
ACAGGGGCGGACCTAGGTGT+TGG + chr3_1:52059186-52059205 Msa0361500:intron 65.0%
GTGTCTGCCCCATACCCGCG+TGG - chr3_1:52057992-52058011 None:intergenic 70.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr3_1:52059852-52059871 Msa0361500:intron 70.0%
CACCCCCTGACCTAGGGTCC+TGG + chr3_1:52060025-52060044 Msa0361500:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 52054642 52063021 52054642 ID=Msa0361500;Name=Msa0361500
chr3_1 mRNA 52054642 52063021 52054642 ID=Msa0361500-mRNA-1;Parent=Msa0361500;Name=Msa0361500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=508|0.5|0.66|1|0|0.66|3|281|309
chr3_1 exon 52054642 52054795 52054642 ID=Msa0361500-mRNA-1:exon:9317;Parent=Msa0361500-mRNA-1
chr3_1 exon 52060198 52060638 52060198 ID=Msa0361500-mRNA-1:exon:9318;Parent=Msa0361500-mRNA-1
chr3_1 exon 52061898 52063021 52061898 ID=Msa0361500-mRNA-1:exon:9319;Parent=Msa0361500-mRNA-1
chr3_1 five_prime_UTR 52054642 52054795 52054642 ID=Msa0361500-mRNA-1:five_prime_utr;Parent=Msa0361500-mRNA-1
chr3_1 five_prime_UTR 52060198 52060551 52060198 ID=Msa0361500-mRNA-1:five_prime_utr;Parent=Msa0361500-mRNA-1
chr3_1 CDS 52060552 52060638 52060552 ID=Msa0361500-mRNA-1:cds;Parent=Msa0361500-mRNA-1
chr3_1 CDS 52061898 52062740 52061898 ID=Msa0361500-mRNA-1:cds;Parent=Msa0361500-mRNA-1
chr3_1 three_prime_UTR 52062741 52063021 52062741 ID=Msa0361500-mRNA-1:three_prime_utr;Parent=Msa0361500-mRNA-1
Gene Sequence

>Msa0361500

ATGAAATTTTTGATCCATCAAAGTCTACTTCTTATTGCAATATTTCATGTACTTCTTCAGATTGCACTCAACTATCTTCATCCACAGATGGATCCTCCAAAATGTTCTGCATTAACAAAAGCATGTGAATATGGCATGTTTTATAGTGACCAATCCTTCTCCAAAGGATACTTCAGCCGTGAACGACTAACCATAACGCCAACGGACTCAATTGATGGTTTCCTTTTCGGTTGTGGGCAATACAACCAAGGTCTGTTCGGCATGTCTGCCGGCATATTAGGCCTTGGTCGTCATCCAATCTCTTTCGTCCAACAAACCTCTAAAAAATTCAACAAAATTTTCTCTTATTGTCTTCCTTCCACTTCCAGCGTTATTGGCCACCTCACATTTGGAGTTACCGATAATAACAAGGTGGCCAACAACGCCGTTAAATACACTCCCTTATCCACAATCTCACGTAGTAATTCCTTCTACGGTCTTGACATCGTTGGCATCAGTGTTGCCAAAACCAAGCTTTCAATATCATCCTCCATTTTCTCCTTCGGTGGCGCCATCATTGACTCTGGTACTGTCATTACACGGCTGCCGCCGTCTGCCTATGCTAGCCTTCGTCATGCATTCCGGAAAGAAATGGCGAAGTATCCAGCTGCTTCGGGGTTTCAAATTTTAGATACATGCTATGATCTTAGAGGGAGGGAAAATGTGGTTGTTCCAAAGATTAGTTTTGTCTTTGGTGGTGGTGTCACAGTGGAGCTTGGTGCACACGGGGTACTTTTCCCTGTGAGTTCGAGGCAAGTTTGTTTGGCATTTGCGGCGAATAGAGATGATAGGGATATTACTATCTTTGGGAATGTGCAACAAAGAACACTAGAGGTTGTTTATGATGTTGGTGGTGGTAAGATTGGGTTTCGTTCAAATGGTTGCAAGTGA
Protein sequence

>Msa0361500

MKFLIHQSLLLIAIFHVLLQIALNYLHPQMDPPKCSALTKACEYGMFYSDQSFSKGYFSRERLTITPTDSIDGFLFGCGQYNQGLFGMSAGILGLGRHPISFVQQTSKKFNKIFSYCLPSTSSVIGHLTFGVTDNNKVANNAVKYTPLSTISRSNSFYGLDIVGISVAKTKLSISSSIFSFGGAIIDSGTVITRLPPSAYASLRHAFRKEMAKYPAASGFQILDTCYDLRGRENVVVPKISFVFGGGVTVELGAHGVLFPVSSRQVCLAFAANRDDRDITIFGNVQQRTLEVVYDVGGGKIGFRSNGCK*