AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0243990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243990 MtrunA17_Chr2g0297761 82.155 297 13 1 1 257 1 297 2.96e-177 489
Msa0243990 MtrunA17_Chr2g0297771 82.155 297 13 1 1 257 1 297 2.96e-177 489
Msa0243990 MtrunA17_Chr2g0297781 82.155 297 13 1 1 257 1 297 2.96e-177 489
Msa0243990 MtrunA17_Chr2g0297731 54.000 300 92 5 1 256 1 298 2.60e-106 310
Msa0243990 MtrunA17_Chr2g0303381 40.461 304 119 10 3 255 15 307 2.49e-60 192
Msa0243990 MtrunA17_Chr2g0303401 40.461 304 119 10 3 255 15 307 2.49e-60 192
Msa0243990 MtrunA17_Chr8g0350511 40.067 297 118 10 4 255 16 297 4.00e-52 171
Msa0243990 MtrunA17_Chr8g0350521 40.067 297 118 10 4 255 16 297 4.00e-52 171
Msa0243990 MtrunA17_Chr8g0350541 40.067 297 118 10 4 255 16 297 4.00e-52 171
Msa0243990 MtrunA17_Chr8g0350501 40.067 297 118 10 4 255 16 297 4.00e-52 171
Msa0243990 MtrunA17_Chr2g0297811 36.789 299 135 7 4 255 15 306 7.94e-50 166
Msa0243990 MtrunA17_Chr2g0297801 36.789 299 135 7 4 255 15 306 7.94e-50 166
Msa0243990 MtrunA17_Chr2g0297791 36.789 299 135 7 4 255 15 306 7.94e-50 166
Msa0243990 MtrunA17_Chr8g0350531 40.067 297 118 10 4 255 280 561 1.37e-49 171
Msa0243990 MtrunA17_Chr8g0350531 38.806 268 106 8 4 226 16 270 1.50e-41 149
Msa0243990 MtrunA17_Chr8g0350441 36.301 292 130 8 4 255 15 290 1.69e-47 159
Msa0243990 MtrunA17_Chr8g0350431 36.860 293 123 9 4 253 15 288 7.78e-46 155
Msa0243990 MtrunA17_Chr8g0350421 36.860 293 123 9 4 253 15 288 7.78e-46 155
Msa0243990 MtrunA17_Chr8g0350411 36.860 293 123 9 4 253 15 288 7.78e-46 155
Msa0243990 MtrunA17_Chr8g0350551 37.037 297 113 10 4 255 16 283 7.11e-43 147
Msa0243990 MtrunA17_Chr8g0350451 38.376 271 107 11 4 233 15 266 2.09e-41 143
Msa0243990 MtrunA17_Chr8g0350461 38.376 271 107 11 4 233 15 266 2.09e-41 143
Msa0243990 MtrunA17_Chr8g0350471 38.376 271 107 11 4 233 15 266 2.09e-41 143
Msa0243990 MtrunA17_Chr2g0327601 32.500 280 119 13 2 234 29 285 1.13e-26 105
Msa0243990 MtrunA17_Chr6g0481561 29.766 299 134 13 4 255 34 303 8.37e-22 92.0
Msa0243990 MtrunA17_Chr2g0327611 32.240 183 111 6 46 226 106 277 6.13e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 59 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGAATTCCACTTCATTT+TGG 0.093829 2_2:+21882777 Msa0243990:CDS
AGCCATTCTCAACAAATTTA+AGG 0.166592 2_2:+21882722 Msa0243990:CDS
AAAATGAGGCCAATATAAAT+TGG 0.218265 2_2:+21886223 Msa0243990:CDS
GAGAATGTCTAAAATCTTTC+GGG 0.256008 2_2:+21882684 None:intergenic
AACGAAAGGTTTATTCTCAT+TGG 0.271867 2_2:-21886499 None:intergenic
TGAGAATGTCTAAAATCTTT+CGG 0.303326 2_2:+21882683 None:intergenic
GAAGTGGAATTCTGAGATAT+TGG 0.303944 2_2:-21882770 None:intergenic
GTAGTTAACCCAATTTATAT+TGG 0.311688 2_2:-21886232 None:intergenic
TCCCTTAAATTTGTTGAGAA+TGG 0.328006 2_2:-21882724 None:intergenic
CCAAGGGAGCACTTCATTGC+TGG 0.335528 2_2:+21886399 Msa0243990:CDS
GCCATTCTCAACAAATTTAA+GGG 0.342684 2_2:+21882723 Msa0243990:CDS
TACCAGGGAGTGATGCTATC+TGG 0.345229 2_2:-21886437 None:intergenic
AATGCCATCAATTATGTTGC+CGG 0.364218 2_2:-21886025 None:intergenic
ATCCAGATAGTTTCCTCAAC+AGG 0.369815 2_2:-21885949 None:intergenic
ATCCTGTTGAGGAAACTATC+TGG 0.376187 2_2:+21885947 Msa0243990:CDS
AAACCTAGTGTAGTCCTTCC+AGG 0.379308 2_2:+21886333 Msa0243990:CDS
GTTTAGATTGGTTGTAGAAC+TGG 0.408788 2_2:-21886254 None:intergenic
GACCTGTGTCACCTGTAGTA+TGG 0.420193 2_2:-21886071 None:intergenic
TCCCTTGGCATCTTGTCTAC+AGG 0.422781 2_2:-21886384 None:intergenic
ACGAAAGGTTTATTCTCATT+GGG 0.427989 2_2:-21886498 None:intergenic
TCCACTACCGCAACTTGTAT+TGG 0.430990 2_2:+21886199 Msa0243990:CDS
AGCTTGTCGGTGCTAACTCC+TGG 0.441987 2_2:-21886351 None:intergenic
GCCAATACAAGTTGCGGTAG+TGG 0.444051 2_2:-21886200 None:intergenic
CCAGCAATGAAGTGCTCCCT+TGG 0.447592 2_2:-21886399 None:intergenic
GTTTCCTCAACAGGATTGAA+TGG 0.450198 2_2:-21885940 None:intergenic
AAATGAGGCCAATATAAATT+GGG 0.460346 2_2:+21886224 Msa0243990:CDS
GTAGTGGATTTCATTGGTCT+CGG 0.464555 2_2:-21886184 None:intergenic
GTGTGGATACAGGTTTAGAT+TGG 0.466973 2_2:-21886266 None:intergenic
GTTGCGGTAGTGGATTTCAT+TGG 0.476031 2_2:-21886190 None:intergenic
CAAACCGGCAACATAATTGA+TGG 0.487574 2_2:+21886021 Msa0243990:CDS
GTTTGTAGTTTCTTGATACC+TGG 0.496915 2_2:-21886314 None:intergenic
AAGTCGTCAAGTGTGGATAC+AGG 0.506124 2_2:-21886276 None:intergenic
GGTTTATTCTCATTGGGTAG+AGG 0.508257 2_2:-21886492 None:intergenic
AGGCTCAATGTGAAGCTTGT+CGG 0.519403 2_2:-21886364 None:intergenic
TGGATTTCATTGGTCTCGGA+TGG 0.520530 2_2:-21886180 None:intergenic
CTTAACGTCTTCCATACTAC+AGG 0.526898 2_2:+21886060 Msa0243990:CDS
TATAACTTGCCCTATGCACC+TGG 0.529459 2_2:-21886106 None:intergenic
TATCTGGATTACGCGGGCTG+TGG 0.534790 2_2:+21885963 Msa0243990:CDS
AACTCCATTCAATCCTGTTG+AGG 0.541015 2_2:+21885936 Msa0243990:CDS
ACTCACGAGATTAACTTATG+AGG 0.542547 2_2:-21886545 None:intergenic
CTCCAGATAGCATCACTCCC+TGG 0.543202 2_2:+21886435 Msa0243990:CDS
AAAATCTTTCGGGAATACAT+TGG 0.558429 2_2:+21882694 Msa0243990:CDS
AAGATATCCTCTAAAACGAA+AGG 0.564294 2_2:-21886513 None:intergenic
ATTGGTCTCGGATGGAGCAA+TGG 0.568409 2_2:-21886172 None:intergenic
CAACTTGTATTGGCAAAATG+AGG 0.568523 2_2:+21886209 Msa0243990:CDS
CACGAGATTAACTTATGAGG+AGG 0.580594 2_2:-21886542 None:intergenic
CTTTCTAAAACTCTATGACC+AGG 0.587302 2_2:+21886296 Msa0243990:CDS
TGGCAAAGCCCAAAATGAAG+TGG 0.590379 2_2:-21882786 None:intergenic
AAGGTGGTAATAAGCATTGG+AGG 0.601267 2_2:+21885898 Msa0243990:intron
AGCCTGTAGACAAGATGCCA+AGG 0.602389 2_2:+21886382 Msa0243990:CDS
TGTCGGTGCTAACTCCTGGA+AGG 0.636397 2_2:-21886347 None:intergenic
TTCCATACTACAGGTGACAC+AGG 0.642642 2_2:+21886069 Msa0243990:CDS
ACTCCTGGAAGGACTACACT+AGG 0.646709 2_2:-21886336 None:intergenic
AGGAAACTATCTGGATTACG+CGG 0.653571 2_2:+21885956 Msa0243990:CDS
CTATGCACCTGGCAAAACGA+AGG 0.654236 2_2:-21886095 None:intergenic
GCCTGTAGACAAGATGCCAA+GGG 0.657771 2_2:+21886383 Msa0243990:CDS
GGAAACTATCTGGATTACGC+GGG 0.674836 2_2:+21885957 Msa0243990:CDS
CAGGGAGTGATGCTATCTGG+AGG 0.684672 2_2:-21886434 None:intergenic
TTGAGCGTCATACTCCTCAG+TGG 0.713125 2_2:-21882806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTCTTTTACTATAAATAT+AGG + chr2_2:21883102-21883121 Msa0243990:intron 15.0%
!!! GTTTCTTTTACTATAAATAT+AGG + chr2_2:21883102-21883121 Msa0243990:intron 15.0%
!!! ATTTTTCAGAAACGTATTTT+TGG + chr2_2:21883053-21883072 Msa0243990:intron 20.0%
!!! TTTTTCAGAAACGTATTTTT+GGG + chr2_2:21883054-21883073 Msa0243990:intron 20.0%
!!! CAGATTTGTTACAATTTTAT+GGG + chr2_2:21883078-21883097 Msa0243990:intron 20.0%
!!! ATTTTTCAGAAACGTATTTT+TGG + chr2_2:21883053-21883072 Msa0243990:intron 20.0%
!!! TTTTTCAGAAACGTATTTTT+GGG + chr2_2:21883054-21883073 Msa0243990:intron 20.0%
!!! CAGATTTGTTACAATTTTAT+GGG + chr2_2:21883078-21883097 Msa0243990:intron 20.0%
!!! TTGGTTTTGATTATTTGAAC+TGG - chr2_2:21882754-21882773 None:intergenic 25.0%
! CCATAAAATTGTAACAAATC+TGG - chr2_2:21883080-21883099 None:intergenic 25.0%
!!! CCAGATTTGTTACAATTTTA+TGG + chr2_2:21883077-21883096 Msa0243990:intron 25.0%
! GTTACAAAAGAGATTTCAAT+GGG - chr2_2:21883336-21883355 None:intergenic 25.0%
! AAAGGATAATCAAGTATCAT+GGG + chr2_2:21883613-21883632 Msa0243990:intron 25.0%
! TTTGTATATGACAAAGTCTT+TGG + chr2_2:21883897-21883916 Msa0243990:intron 25.0%
! TTAAACGATTCAAAAGATCT+AGG - chr2_2:21884087-21884106 None:intergenic 25.0%
!! CAAAATACTCAAGGAATTTT+AGG - chr2_2:21884952-21884971 None:intergenic 25.0%
!! CTAAAATTCCTTGAGTATTT+TGG + chr2_2:21884950-21884969 Msa0243990:intron 25.0%
! CCATAAAATTGTAACAAATC+TGG - chr2_2:21883080-21883099 None:intergenic 25.0%
!!! CCAGATTTGTTACAATTTTA+TGG + chr2_2:21883077-21883096 Msa0243990:intron 25.0%
! GTTACAAAAGAGATTTCAAT+GGG - chr2_2:21883336-21883355 None:intergenic 25.0%
! AAAATGAGGCCAATATAAAT+TGG + chr2_2:21886223-21886242 Msa0243990:CDS 25.0%
! AAATGAGGCCAATATAAATT+GGG + chr2_2:21886224-21886243 Msa0243990:CDS 25.0%
! GTAGTTAACCCAATTTATAT+TGG - chr2_2:21886235-21886254 None:intergenic 25.0%
AAAATCTTTCGGGAATACAT+TGG + chr2_2:21882694-21882713 Msa0243990:CDS 30.0%
AGCCATTCTCAACAAATTTA+AGG + chr2_2:21882722-21882741 Msa0243990:CDS 30.0%
GCCATTCTCAACAAATTTAA+GGG + chr2_2:21882723-21882742 Msa0243990:CDS 30.0%
!! TCCCTTAAATTTGTTGAGAA+TGG - chr2_2:21882727-21882746 None:intergenic 30.0%
! TCAGAATTCCACTTCATTTT+GGG + chr2_2:21882778-21882797 Msa0243990:CDS 30.0%
TTGTGAAAGTGACTCAAAAT+TGG + chr2_2:21882875-21882894 Msa0243990:intron 30.0%
! CTTTCAGCAAACATCAATTT+TGG - chr2_2:21882911-21882930 None:intergenic 30.0%
! TGTTTGCTGAAAGTACAAAT+CGG + chr2_2:21882918-21882937 Msa0243990:intron 30.0%
TCTCAAAATAGTCTGATACA+AGG - chr2_2:21883128-21883147 None:intergenic 30.0%
!! ACTATTTTGAGAGAGATAGA+GGG + chr2_2:21883136-21883155 Msa0243990:intron 30.0%
AAGGGTTTAGAAATCAAACT+AGG + chr2_2:21883168-21883187 Msa0243990:intron 30.0%
AGGGTTTAGAAATCAAACTA+GGG + chr2_2:21883169-21883188 Msa0243990:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG + chr2_2:21883192-21883211 Msa0243990:intron 30.0%
CGTTACAAAAGAGATTTCAA+TGG - chr2_2:21883337-21883356 None:intergenic 30.0%
TAACGTTACTCATCATATAG+TGG + chr2_2:21883352-21883371 Msa0243990:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG + chr2_2:21883357-21883376 Msa0243990:intron 30.0%
! TTGTTCCATACACTTGATTT+TGG + chr2_2:21883494-21883513 Msa0243990:intron 30.0%
CAAAGGATAATCAAGTATCA+TGG + chr2_2:21883612-21883631 Msa0243990:intron 30.0%
TTTAAAGATACCATGCTCTA+TGG + chr2_2:21884102-21884121 Msa0243990:intron 30.0%
! ATGCTTTAAGTGTAACAAGA+TGG + chr2_2:21884296-21884315 Msa0243990:intron 30.0%
! TGCTTTAAGTGTAACAAGAT+GGG + chr2_2:21884297-21884316 Msa0243990:intron 30.0%
TAAGAATACTCATGATCTAC+CGG + chr2_2:21884522-21884541 Msa0243990:intron 30.0%
ACCTTAATCTCTTCAATCAT+CGG - chr2_2:21885008-21885027 None:intergenic 30.0%
TTGTGAAAGTGACTCAAAAT+TGG + chr2_2:21882875-21882894 Msa0243990:intron 30.0%
! CTTTCAGCAAACATCAATTT+TGG - chr2_2:21882911-21882930 None:intergenic 30.0%
! TGTTTGCTGAAAGTACAAAT+CGG + chr2_2:21882918-21882937 Msa0243990:intron 30.0%
TCTCAAAATAGTCTGATACA+AGG - chr2_2:21883128-21883147 None:intergenic 30.0%
!! ACTATTTTGAGAGAGATAGA+GGG + chr2_2:21883136-21883155 Msa0243990:intron 30.0%
AAGGGTTTAGAAATCAAACT+AGG + chr2_2:21883168-21883187 Msa0243990:intron 30.0%
AGGGTTTAGAAATCAAACTA+GGG + chr2_2:21883169-21883188 Msa0243990:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG + chr2_2:21883192-21883211 Msa0243990:intron 30.0%
CGTTACAAAAGAGATTTCAA+TGG - chr2_2:21883337-21883356 None:intergenic 30.0%
TAACGTTACTCATCATATAG+TGG + chr2_2:21883352-21883371 Msa0243990:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG + chr2_2:21883357-21883376 Msa0243990:intron 30.0%
! TTGTTCCATACACTTGATTT+TGG + chr2_2:21883494-21883513 Msa0243990:intron 30.0%
AAATAATCCAAATGTGAAGG+TGG + chr2_2:21885882-21885901 Msa0243990:intron 30.0%
!! AGGATTGAATGGAGTTTTAA+CGG - chr2_2:21885932-21885951 None:intergenic 30.0%
AGTGATCATCCAAAAATACA+AGG + chr2_2:21885996-21886015 Msa0243990:CDS 30.0%
CAAAAATACAAGGATCAAAC+CGG + chr2_2:21886006-21886025 Msa0243990:CDS 30.0%
ACGAAAGGTTTATTCTCATT+GGG - chr2_2:21886501-21886520 None:intergenic 30.0%
AACGAAAGGTTTATTCTCAT+TGG - chr2_2:21886502-21886521 None:intergenic 30.0%
! GAATAAACCTTTCGTTTTAG+AGG + chr2_2:21886506-21886525 Msa0243990:CDS 30.0%
!! AAGATATCCTCTAAAACGAA+AGG - chr2_2:21886516-21886535 None:intergenic 30.0%
!! GAAGTGGAATTCTGAGATAT+TGG - chr2_2:21882773-21882792 None:intergenic 35.0%
! CTCAGAATTCCACTTCATTT+TGG + chr2_2:21882777-21882796 Msa0243990:CDS 35.0%
AGTGACTCAAAATTGGAGTT+TGG + chr2_2:21882882-21882901 Msa0243990:intron 35.0%
AAAATAACAGCACGCGAAAT+CGG - chr2_2:21883038-21883057 None:intergenic 35.0%
!! GACTATTTTGAGAGAGATAG+AGG + chr2_2:21883135-21883154 Msa0243990:intron 35.0%
!! CTATTTTGAGAGAGATAGAG+GGG + chr2_2:21883137-21883156 Msa0243990:intron 35.0%
!! TATTTTGAGAGAGATAGAGG+GGG + chr2_2:21883138-21883157 Msa0243990:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG + chr2_2:21883228-21883247 Msa0243990:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG - chr2_2:21883247-21883266 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG + chr2_2:21883255-21883274 Msa0243990:intron 35.0%
AAGAATCTGTTTACCCAGTT+CGG - chr2_2:21883419-21883438 None:intergenic 35.0%
AGCAACCAAAATCAAGTGTA+TGG - chr2_2:21883502-21883521 None:intergenic 35.0%
! TCCACACATCAAGTTGTTAT+TGG + chr2_2:21883536-21883555 Msa0243990:intron 35.0%
ACCAATAACAACTTGATGTG+TGG - chr2_2:21883540-21883559 None:intergenic 35.0%
TTCATCGAATTCGCAACAAT+TGG + chr2_2:21883568-21883587 Msa0243990:intron 35.0%
AAGTATCATGGGTTCAAAGT+GGG + chr2_2:21883624-21883643 Msa0243990:intron 35.0%
TGGGATATTGAGAAGTTTAC+CGG + chr2_2:21883643-21883662 Msa0243990:intron 35.0%
! TTTACCGGAGATAACGATTT+TGG + chr2_2:21883658-21883677 Msa0243990:intron 35.0%
! TTACCGGAGATAACGATTTT+GGG + chr2_2:21883659-21883678 Msa0243990:intron 35.0%
TAACCCAAAATCGTTATCTC+CGG - chr2_2:21883665-21883684 None:intergenic 35.0%
!!! GAGATAACGATTTTGGGTTA+TGG + chr2_2:21883665-21883684 Msa0243990:intron 35.0%
!!! TAACGATTTTGGGTTATGGA+AGG + chr2_2:21883669-21883688 Msa0243990:intron 35.0%
! AAAGTGTGAGAAAGCTTTGA+AGG + chr2_2:21883720-21883739 Msa0243990:intron 35.0%
!! AAGTGTGAGAAAGCTTTGAA+GGG + chr2_2:21883721-21883740 Msa0243990:intron 35.0%
!!! AGTTTTGAGAGAAGTAGCAA+AGG + chr2_2:21883837-21883856 Msa0243990:intron 35.0%
!! ATGAGTAGAGTTGTTGCTTT+AGG - chr2_2:21883936-21883955 None:intergenic 35.0%
ACAACTCTACTCATTCAAGA+TGG + chr2_2:21883942-21883961 Msa0243990:intron 35.0%
! CAACAAAATCCTTGATGACT+TGG + chr2_2:21884002-21884021 Msa0243990:intron 35.0%
CAATATTCTCCAAGTCATCA+AGG - chr2_2:21884014-21884033 None:intergenic 35.0%
! TGATGACTTGGAGAATATTG+AGG + chr2_2:21884014-21884033 Msa0243990:intron 35.0%
GAATATTGAGGTGAATCTTG+AGG + chr2_2:21884026-21884045 Msa0243990:intron 35.0%
!! GACTTGAGAGTTGATGAAAA+CGG + chr2_2:21884195-21884214 Msa0243990:intron 35.0%
!! ACTTGAGAGTTGATGAAAAC+GGG + chr2_2:21884196-21884215 Msa0243990:intron 35.0%
!!! TCTTGTTACTACTTTTTCCC+CGG - chr2_2:21884266-21884285 None:intergenic 35.0%
! AAGGGTTTTCTTCATGAAGA+CGG + chr2_2:21884688-21884707 Msa0243990:intron 35.0%
AGGTTGAAGAATGTATAGCA+CGG + chr2_2:21884723-21884742 Msa0243990:intron 35.0%
GAATTACCCTAAAAGTCCAA+GGG + chr2_2:21884752-21884771 Msa0243990:intron 35.0%
CAAACTACACTAGGAATTTC+AGG - chr2_2:21884856-21884875 None:intergenic 35.0%
CTGAAATTCCTAGTGTAGTT+TGG + chr2_2:21884854-21884873 Msa0243990:intron 35.0%
TCCGATGATTGAAGAGATTA+AGG + chr2_2:21885004-21885023 Msa0243990:intron 35.0%
GAGATTAAGGTGTAAACTTG+TGG + chr2_2:21885017-21885036 Msa0243990:intron 35.0%
!! AGCAAGGTGTTGATGTTAAA+TGG + chr2_2:21885075-21885094 Msa0243990:intron 35.0%
!! GCAAGGTGTTGATGTTAAAT+GGG + chr2_2:21885076-21885095 Msa0243990:intron 35.0%
AATGGGCATCATCACTAATT+TGG + chr2_2:21885093-21885112 Msa0243990:intron 35.0%
! TCATCACTAATTTGGAGTCA+AGG + chr2_2:21885101-21885120 Msa0243990:intron 35.0%
AGTGACTCAAAATTGGAGTT+TGG + chr2_2:21882882-21882901 Msa0243990:intron 35.0%
AAAATAACAGCACGCGAAAT+CGG - chr2_2:21883038-21883057 None:intergenic 35.0%
!! GACTATTTTGAGAGAGATAG+AGG + chr2_2:21883135-21883154 Msa0243990:intron 35.0%
!! CTATTTTGAGAGAGATAGAG+GGG + chr2_2:21883137-21883156 Msa0243990:intron 35.0%
!! TATTTTGAGAGAGATAGAGG+GGG + chr2_2:21883138-21883157 Msa0243990:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG + chr2_2:21883228-21883247 Msa0243990:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG - chr2_2:21883247-21883266 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG + chr2_2:21883255-21883274 Msa0243990:intron 35.0%
AAGAATCTGTTTACCCAGTT+CGG - chr2_2:21883419-21883438 None:intergenic 35.0%
AGCAACCAAAATCAAGTGTA+TGG - chr2_2:21883502-21883521 None:intergenic 35.0%
! TCCACACATCAAGTTGTTAT+TGG + chr2_2:21883536-21883555 Msa0243990:intron 35.0%
ACCAATAACAACTTGATGTG+TGG - chr2_2:21883540-21883559 None:intergenic 35.0%
TTCAAATTTCTCACTGCTTC+TGG - chr2_2:21885859-21885878 None:intergenic 35.0%
AGAAGCAGTGAGAAATTTGA+AGG + chr2_2:21885858-21885877 Msa0243990:intron 35.0%
GAAGCAGTGAGAAATTTGAA+GGG + chr2_2:21885859-21885878 Msa0243990:intron 35.0%
GGGAAATAATCCAAATGTGA+AGG + chr2_2:21885879-21885898 Msa0243990:intron 35.0%
CTTATTACCACCTTCACATT+TGG - chr2_2:21885892-21885911 None:intergenic 35.0%
! CGGTTTGATCCTTGTATTTT+TGG - chr2_2:21886008-21886027 None:intergenic 35.0%
AATGCCATCAATTATGTTGC+CGG - chr2_2:21886028-21886047 None:intergenic 35.0%
! CATTTTGCCAATACAAGTTG+CGG - chr2_2:21886209-21886228 None:intergenic 35.0%
! CAACTTGTATTGGCAAAATG+AGG + chr2_2:21886209-21886228 Msa0243990:CDS 35.0%
! GTTTAGATTGGTTGTAGAAC+TGG - chr2_2:21886257-21886276 None:intergenic 35.0%
!! TTTTAGAAAGTCGTCAAGTG+TGG - chr2_2:21886286-21886305 None:intergenic 35.0%
!! CTTTCTAAAACTCTATGACC+AGG + chr2_2:21886296-21886315 Msa0243990:CDS 35.0%
GTTTGTAGTTTCTTGATACC+TGG - chr2_2:21886317-21886336 None:intergenic 35.0%
CGTTCCAAAGAAAAATACCA+GGG - chr2_2:21886455-21886474 None:intergenic 35.0%
GAGTATGACGCTCAAAATAG+AGG + chr2_2:21882814-21882833 Msa0243990:intron 40.0%
!! CAGGAGTTTTCAAGGAAACT+TGG + chr2_2:21882839-21882858 Msa0243990:intron 40.0%
GACTCAAAATTGGAGTTTGG+AGG + chr2_2:21882885-21882904 Msa0243990:intron 40.0%
! TTGCTGAAAGTACAAATCGG+TGG + chr2_2:21882921-21882940 Msa0243990:intron 40.0%
GCTTTCTGTTCGGGAAAAAT+CGG + chr2_2:21882988-21883007 Msa0243990:intron 40.0%
TTGTCTCTTGGCAACAAACT+AGG + chr2_2:21883204-21883223 Msa0243990:intron 40.0%
TGTCTCTTGGCAACAAACTA+GGG + chr2_2:21883205-21883224 Msa0243990:intron 40.0%
! GTTTGAAGGTTGATTCACCT+TGG + chr2_2:21883227-21883246 Msa0243990:intron 40.0%
TCACCTTGGGAAACACTATT+AGG + chr2_2:21883241-21883260 Msa0243990:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + chr2_2:21883261-21883280 Msa0243990:intron 40.0%
! TCATCATATAGTGGAACGGA+GGG + chr2_2:21883361-21883380 Msa0243990:intron 40.0%
GAAAACGACAGCGAGAAAAA+AGG - chr2_2:21883455-21883474 None:intergenic 40.0%
!!! TCGCTGTCGTTTTCTACTTT+TGG + chr2_2:21883461-21883480 Msa0243990:intron 40.0%
CAAGTATCATGGGTTCAAAG+TGG + chr2_2:21883623-21883642 Msa0243990:intron 40.0%
TGGGTTATGGAAGGTAAAGA+TGG + chr2_2:21883678-21883697 Msa0243990:intron 40.0%
ATGGAAGGTAAAGATGGAAG+CGG + chr2_2:21883684-21883703 Msa0243990:intron 40.0%
CTCTCAAAACTTTATCTCCG+AGG - chr2_2:21883828-21883847 None:intergenic 40.0%
! TGACAAAGTCTTTGGCTCAT+CGG + chr2_2:21883905-21883924 Msa0243990:intron 40.0%
ACTCTACTCATTCAAGATGG+TGG + chr2_2:21883945-21883964 Msa0243990:intron 40.0%
!! ATTCAAGATGGTGGAGTCAA+AGG + chr2_2:21883954-21883973 Msa0243990:intron 40.0%
ACCATGCTCTATGGAAAAGA+AGG + chr2_2:21884111-21884130 Msa0243990:intron 40.0%
!! AAAAGAAGGCACTGTTACCT+TGG + chr2_2:21884125-21884144 Msa0243990:intron 40.0%
TACCTTGGAAGAAGTTCAAG+CGG + chr2_2:21884140-21884159 Msa0243990:intron 40.0%
!! CTTGAGAGTTGATGAAAACG+GGG + chr2_2:21884197-21884216 Msa0243990:intron 40.0%
AAGGCCTAAGTGTTTCAAGA+GGG + chr2_2:21884220-21884239 Msa0243990:intron 40.0%
CATTCCCTCTTGAAACACTT+AGG - chr2_2:21884227-21884246 None:intergenic 40.0%
CTAAGTGTTTCAAGAGGGAA+TGG + chr2_2:21884225-21884244 Msa0243990:intron 40.0%
TCACTTCAAGAAGGATTGTC+CGG + chr2_2:21884320-21884339 Msa0243990:intron 40.0%
AAGGATTGTCCGGAGATTAA+TGG + chr2_2:21884330-21884349 Msa0243990:intron 40.0%
AATTGTCACTGAGGGTTATG+AGG + chr2_2:21884365-21884384 Msa0243990:intron 40.0%
!! ACCTTGGTATTGATGCTTAG+TGG + chr2_2:21884442-21884461 Msa0243990:intron 40.0%
TCCACTAAGCATCAATACCA+AGG - chr2_2:21884446-21884465 None:intergenic 40.0%
TTAAACACTCAACATCAGCC+TGG + chr2_2:21884488-21884507 Msa0243990:intron 40.0%
AGGTTCAAGGAAGACATAGT+GGG + chr2_2:21884554-21884573 Msa0243990:intron 40.0%
! GTACTCATTTGCTAGTTGAG+AGG + chr2_2:21884579-21884598 Msa0243990:intron 40.0%
! TCATTTGCTAGTTGAGAGGT+TGG + chr2_2:21884583-21884602 Msa0243990:intron 40.0%
! GTTTTCTTCATGAAGACGGA+AGG + chr2_2:21884692-21884711 Msa0243990:intron 40.0%
GCTATACATTCTTCAACCTC+CGG - chr2_2:21884722-21884741 None:intergenic 40.0%
GGAATTACCCTAAAAGTCCA+AGG + chr2_2:21884751-21884770 Msa0243990:intron 40.0%
! CAATCACCCTTGGACTTTTA+GGG - chr2_2:21884761-21884780 None:intergenic 40.0%
TGTCTCGTATTGAAGAGGTA+TGG + chr2_2:21884812-21884831 Msa0243990:intron 40.0%
CCTTGTATCCAAACTACACT+AGG - chr2_2:21884865-21884884 None:intergenic 40.0%
CCTAGTGTAGTTTGGATACA+AGG + chr2_2:21884862-21884881 Msa0243990:intron 40.0%
CCTTGTGTCCAAAATACTCA+AGG - chr2_2:21884961-21884980 None:intergenic 40.0%
!! CCTTGAGTATTTTGGACACA+AGG + chr2_2:21884958-21884977 Msa0243990:intron 40.0%
TTGGACACAAGGATCTTCAA+AGG + chr2_2:21884969-21884988 Msa0243990:intron 40.0%
TGGACACAAGGATCTTCAAA+GGG + chr2_2:21884970-21884989 Msa0243990:intron 40.0%
TGTAAACTTGTGGAGCTACT+TGG + chr2_2:21885027-21885046 Msa0243990:intron 40.0%
! TCACTAATTTGGAGTCAAGG+TGG + chr2_2:21885104-21885123 Msa0243990:intron 40.0%
GACTCAAAATTGGAGTTTGG+AGG + chr2_2:21882885-21882904 Msa0243990:intron 40.0%
! TTGCTGAAAGTACAAATCGG+TGG + chr2_2:21882921-21882940 Msa0243990:intron 40.0%
GCTTTCTGTTCGGGAAAAAT+CGG + chr2_2:21882988-21883007 Msa0243990:intron 40.0%
TTGTCTCTTGGCAACAAACT+AGG + chr2_2:21883204-21883223 Msa0243990:intron 40.0%
TGTCTCTTGGCAACAAACTA+GGG + chr2_2:21883205-21883224 Msa0243990:intron 40.0%
! GTTTGAAGGTTGATTCACCT+TGG + chr2_2:21883227-21883246 Msa0243990:intron 40.0%
TCACCTTGGGAAACACTATT+AGG + chr2_2:21883241-21883260 Msa0243990:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + chr2_2:21883261-21883280 Msa0243990:intron 40.0%
! TCATCATATAGTGGAACGGA+GGG + chr2_2:21883361-21883380 Msa0243990:intron 40.0%
GAAAACGACAGCGAGAAAAA+AGG - chr2_2:21883455-21883474 None:intergenic 40.0%
!!! TCGCTGTCGTTTTCTACTTT+TGG + chr2_2:21883461-21883480 Msa0243990:intron 40.0%
!! GAATTCGCAACAAGAGCATT+CGG + chr2_2:21885832-21885851 Msa0243990:intron 40.0%
GTGAAGGTGGTAATAAGCAT+TGG + chr2_2:21885895-21885914 Msa0243990:intron 40.0%
!! AAGGTGGTAATAAGCATTGG+AGG + chr2_2:21885898-21885917 Msa0243990:intron 40.0%
AACTCCATTCAATCCTGTTG+AGG + chr2_2:21885936-21885955 Msa0243990:CDS 40.0%
GTTTCCTCAACAGGATTGAA+TGG - chr2_2:21885943-21885962 None:intergenic 40.0%
ATCCTGTTGAGGAAACTATC+TGG + chr2_2:21885947-21885966 Msa0243990:CDS 40.0%
ATCCAGATAGTTTCCTCAAC+AGG - chr2_2:21885952-21885971 None:intergenic 40.0%
AGGAAACTATCTGGATTACG+CGG + chr2_2:21885956-21885975 Msa0243990:CDS 40.0%
CAAACCGGCAACATAATTGA+TGG + chr2_2:21886021-21886040 Msa0243990:CDS 40.0%
CTTAACGTCTTCCATACTAC+AGG + chr2_2:21886060-21886079 Msa0243990:CDS 40.0%
!! GTAGTGGATTTCATTGGTCT+CGG - chr2_2:21886187-21886206 None:intergenic 40.0%
GTGTGGATACAGGTTTAGAT+TGG - chr2_2:21886269-21886288 None:intergenic 40.0%
! CACTCCCTGGTATTTTTCTT+TGG + chr2_2:21886448-21886467 Msa0243990:CDS 40.0%
GCGTTCCAAAGAAAAATACC+AGG - chr2_2:21886456-21886475 None:intergenic 40.0%
GGTTTATTCTCATTGGGTAG+AGG - chr2_2:21886495-21886514 None:intergenic 40.0%
TGGCAAAGCCCAAAATGAAG+TGG - chr2_2:21882789-21882808 None:intergenic 45.0%
!! TAGAGGCACAGGAGTTTTCA+AGG + chr2_2:21882831-21882850 Msa0243990:intron 45.0%
TCCCAAAAGGCAGCCAAAAT+CGG - chr2_2:21882967-21882986 None:intergenic 45.0%
!! CTTTTGGGAGGCTTTCTGTT+CGG + chr2_2:21882978-21882997 Msa0243990:intron 45.0%
!! TTTTGGGAGGCTTTCTGTTC+GGG + chr2_2:21882979-21882998 Msa0243990:intron 45.0%
TTCTGTTCGGGAAAAATCGG+TGG + chr2_2:21882991-21883010 Msa0243990:intron 45.0%
GGCAACAAACTAGGGTTTGA+AGG + chr2_2:21883213-21883232 Msa0243990:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + chr2_2:21883262-21883281 Msa0243990:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG + chr2_2:21883290-21883309 Msa0243990:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG + chr2_2:21883293-21883312 Msa0243990:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG + chr2_2:21883294-21883313 Msa0243990:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG + chr2_2:21883360-21883379 Msa0243990:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG - chr2_2:21883396-21883415 None:intergenic 45.0%
GTCCAAATTGACCTAGTCTG+GGG - chr2_2:21883397-21883416 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG - chr2_2:21883398-21883417 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG + chr2_2:21883402-21883421 Msa0243990:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG + chr2_2:21883403-21883422 Msa0243990:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG - chr2_2:21883532-21883551 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG - chr2_2:21883533-21883552 None:intergenic 45.0%
!! GAGAAAGCTTTGAAGGGTGA+AGG + chr2_2:21883727-21883746 Msa0243990:intron 45.0%
! GCCTTCTTTTCCATAGAGCA+TGG - chr2_2:21884115-21884134 None:intergenic 45.0%
CTTCGACTTAGTCAACTCCT+TGG - chr2_2:21884175-21884194 None:intergenic 45.0%
CAAGGAGTTGACTAAGTCGA+AGG + chr2_2:21884173-21884192 Msa0243990:intron 45.0%
!! AGAGTTGATGAAAACGGGGA+AGG + chr2_2:21884201-21884220 Msa0243990:intron 45.0%
GAAGGCCTAAGTGTTTCAAG+AGG + chr2_2:21884219-21884238 Msa0243990:intron 45.0%
AGTGTTTCAAGAGGGAATGG+TGG + chr2_2:21884228-21884247 Msa0243990:intron 45.0%
CAAGATGGGTCACTTCAAGA+AGG + chr2_2:21884311-21884330 Msa0243990:intron 45.0%
GCGGAGTTACCATTAATCTC+CGG - chr2_2:21884342-21884361 None:intergenic 45.0%
TCCGCACAAATTGTCACTGA+GGG + chr2_2:21884357-21884376 Msa0243990:intron 45.0%
ACCCTCAGTGACAATTTGTG+CGG - chr2_2:21884361-21884380 None:intergenic 45.0%
!! TCTGATGGTGTGGTGTTGTT+TGG + chr2_2:21884398-21884417 Msa0243990:intron 45.0%
!! TGGTGTTGTTTGGAGGATGA+AGG + chr2_2:21884408-21884427 Msa0243990:intron 45.0%
TTGGAGGATGAAGGTGATGT+TGG + chr2_2:21884417-21884436 Msa0243990:intron 45.0%
!! GGTATTGATGCTTAGTGGAG+CGG + chr2_2:21884447-21884466 Msa0243990:intron 45.0%
GTGTTTAACGTCTCTCCAGA+CGG - chr2_2:21884476-21884495 None:intergenic 45.0%
! TACTCATGATCTACCGGTTG+AGG + chr2_2:21884528-21884547 Msa0243990:intron 45.0%
GAGGTTCAAGGAAGACATAG+TGG + chr2_2:21884553-21884572 Msa0243990:intron 45.0%
TTAGGTGGAGTTGAACACAC+CGG + chr2_2:21884616-21884635 Msa0243990:intron 45.0%
TATGCTCTAGTGGTGAGCAA+GGG + chr2_2:21884670-21884689 Msa0243990:intron 45.0%
AGAATGTATAGCACGGCTTG+TGG + chr2_2:21884730-21884749 Msa0243990:intron 45.0%
! CCAATCACCCTTGGACTTTT+AGG - chr2_2:21884762-21884781 None:intergenic 45.0%
CCTAAAAGTCCAAGGGTGAT+TGG + chr2_2:21884759-21884778 Msa0243990:intron 45.0%
TGGATGCAAGGTGATCTTCA+AGG + chr2_2:21884779-21884798 Msa0243990:intron 45.0%
CAAGGTGATCTTCAAGGAAG+CGG + chr2_2:21884785-21884804 Msa0243990:intron 45.0%
AAGGTGATCTTCAAGGAAGC+GGG + chr2_2:21884786-21884805 Msa0243990:intron 45.0%
GGAGATGTCTCGTATTGAAG+AGG + chr2_2:21884807-21884826 Msa0243990:intron 45.0%
GGATACAAGGATCTTCGAGA+AGG + chr2_2:21884875-21884894 Msa0243990:intron 45.0%
TACAAGGATCTTCGAGAAGG+CGG + chr2_2:21884878-21884897 Msa0243990:intron 45.0%
ACCTTAACCTCTTCAGCCAT+CGG - chr2_2:21884912-21884931 None:intergenic 45.0%
GAGGTTAAGGTGTGTACTTG+TGG + chr2_2:21884921-21884940 Msa0243990:intron 45.0%
GGACACAAGGATCTTCAAAG+GGG + chr2_2:21884971-21884990 Msa0243990:intron 45.0%
TCCCAAAAGGCAGCCAAAAT+CGG - chr2_2:21882967-21882986 None:intergenic 45.0%
!! CTTTTGGGAGGCTTTCTGTT+CGG + chr2_2:21882978-21882997 Msa0243990:intron 45.0%
!! TTTTGGGAGGCTTTCTGTTC+GGG + chr2_2:21882979-21882998 Msa0243990:intron 45.0%
TTCTGTTCGGGAAAAATCGG+TGG + chr2_2:21882991-21883010 Msa0243990:intron 45.0%
GGCAACAAACTAGGGTTTGA+AGG + chr2_2:21883213-21883232 Msa0243990:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + chr2_2:21883262-21883281 Msa0243990:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG + chr2_2:21883290-21883309 Msa0243990:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG + chr2_2:21883293-21883312 Msa0243990:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG + chr2_2:21883294-21883313 Msa0243990:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG + chr2_2:21883360-21883379 Msa0243990:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG - chr2_2:21883396-21883415 None:intergenic 45.0%
GTCCAAATTGACCTAGTCTG+GGG - chr2_2:21883397-21883416 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG - chr2_2:21883398-21883417 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG + chr2_2:21883402-21883421 Msa0243990:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG + chr2_2:21883403-21883422 Msa0243990:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG - chr2_2:21883532-21883551 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG - chr2_2:21883533-21883552 None:intergenic 45.0%
GGAAACTATCTGGATTACGC+GGG + chr2_2:21885957-21885976 Msa0243990:CDS 45.0%
TTCCATACTACAGGTGACAC+AGG + chr2_2:21886069-21886088 Msa0243990:CDS 45.0%
! TTCGTTTTGCCAGGTGCATA+GGG + chr2_2:21886097-21886116 Msa0243990:CDS 45.0%
! TATAACTTGCCCTATGCACC+TGG - chr2_2:21886109-21886128 None:intergenic 45.0%
! TGGATTTCATTGGTCTCGGA+TGG - chr2_2:21886183-21886202 None:intergenic 45.0%
!! GTTGCGGTAGTGGATTTCAT+TGG - chr2_2:21886193-21886212 None:intergenic 45.0%
TCCACTACCGCAACTTGTAT+TGG + chr2_2:21886199-21886218 Msa0243990:CDS 45.0%
AAGTCGTCAAGTGTGGATAC+AGG - chr2_2:21886279-21886298 None:intergenic 45.0%
AAACCTAGTGTAGTCCTTCC+AGG + chr2_2:21886333-21886352 Msa0243990:CDS 45.0%
AGGCTCAATGTGAAGCTTGT+CGG - chr2_2:21886367-21886386 None:intergenic 45.0%
! CATTTTGGGCTTTGCCACTG+AGG + chr2_2:21882792-21882811 Msa0243990:CDS 50.0%
TTGAGCGTCATACTCCTCAG+TGG - chr2_2:21882809-21882828 None:intergenic 50.0%
! GACGCTCAAAATAGAGGCAC+AGG + chr2_2:21882820-21882839 Msa0243990:intron 50.0%
GTACAAATCGGTGGCCGATT+TGG + chr2_2:21882930-21882949 Msa0243990:intron 50.0%
!! CGGTGGCCGATTTGGAAAAT+CGG + chr2_2:21882938-21882957 Msa0243990:intron 50.0%
!! TGGCCGATTTGGAAAATCGG+TGG + chr2_2:21882941-21882960 Msa0243990:intron 50.0%
!!! CGGCCACCGATTTTCCAAAT+CGG - chr2_2:21882947-21882966 None:intergenic 50.0%
!! GGAAAATCGGTGGCCGATTT+TGG + chr2_2:21882951-21882970 Msa0243990:intron 50.0%
!!! GCCGATTTTGGCTGCCTTTT+GGG + chr2_2:21882963-21882982 Msa0243990:intron 50.0%
!!! GATTTTGGCTGCCTTTTGGG+AGG + chr2_2:21882966-21882985 Msa0243990:intron 50.0%
CGAACAGAAAGCCTCCCAAA+AGG - chr2_2:21882980-21882999 None:intergenic 50.0%
GGAAAAATCGGTGGCCGATT+GGG + chr2_2:21883000-21883019 Msa0243990:intron 50.0%
GGTGGCCGATTGGGAAAAAT+CGG + chr2_2:21883009-21883028 Msa0243990:intron 50.0%
!!! GGCCACCGATTTTTCCCAAT+CGG - chr2_2:21883017-21883036 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG + chr2_2:21883149-21883168 Msa0243990:intron 50.0%
GATAGAGGGGGCTGAAACAA+GGG + chr2_2:21883150-21883169 Msa0243990:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG + chr2_2:21883268-21883287 Msa0243990:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG + chr2_2:21883392-21883411 Msa0243990:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG - chr2_2:21883399-21883418 None:intergenic 50.0%
ATCCTTTGACCTTTGCCCCA+CGG - chr2_2:21883600-21883619 None:intergenic 50.0%
GAAGGGTGAAGGTTCGTTAC+CGG + chr2_2:21883738-21883757 Msa0243990:intron 50.0%
! AGTGCCATTGTCTTGTGCCT+CGG + chr2_2:21883808-21883827 Msa0243990:intron 50.0%
ATCTCCGAGGCACAAGACAA+TGG - chr2_2:21883815-21883834 None:intergenic 50.0%
AGTAGCAAAGGAACCAACCG+CGG + chr2_2:21883849-21883868 Msa0243990:intron 50.0%
GGCCATCATGGAGCAACTTA+CGG + chr2_2:21883975-21883994 Msa0243990:intron 50.0%
CTCCGTAAGTTGCTCCATGA+TGG - chr2_2:21883980-21883999 None:intergenic 50.0%
AGCCGCTTGAACTTCTTCCA+AGG - chr2_2:21884145-21884164 None:intergenic 50.0%
!! TCAAGCGGCTTTGAGAACCA+AGG + chr2_2:21884155-21884174 Msa0243990:intron 50.0%
GTTTCAAGAGGGAATGGTGG+AGG + chr2_2:21884231-21884250 Msa0243990:intron 50.0%
! ATGGTGGAGGTAGAGGTAAC+CGG + chr2_2:21884244-21884263 Msa0243990:intron 50.0%
CTCCGCACAAATTGTCACTG+AGG + chr2_2:21884356-21884375 Msa0243990:intron 50.0%
ACTGAGGGTTATGAGGATGC+AGG + chr2_2:21884372-21884391 Msa0243990:intron 50.0%
!! GATGGTGTGGTGTTGTTTGG+AGG + chr2_2:21884401-21884420 Msa0243990:intron 50.0%
GAAGGTGATGTTGGTCACCT+TGG + chr2_2:21884426-21884445 Msa0243990:intron 50.0%
! TCATGATCTACCGGTTGAGG+TGG + chr2_2:21884531-21884550 Msa0243990:intron 50.0%
GAGGTTGGAAGCTCAGCTTT+AGG + chr2_2:21884598-21884617 Msa0243990:intron 50.0%
!! GTTGGAAGCTCAGCTTTAGG+TGG + chr2_2:21884601-21884620 Msa0243990:intron 50.0%
TAGGTGGAGTTGAACACACC+GGG + chr2_2:21884617-21884636 Msa0243990:intron 50.0%
GTACGACTATGGAGGACCTT+GGG + chr2_2:21884644-21884663 Msa0243990:intron 50.0%
CTATGCTCTAGTGGTGAGCA+AGG + chr2_2:21884669-21884688 Msa0243990:intron 50.0%
!! CATGAAGACGGAAGGCATTC+CGG + chr2_2:21884700-21884719 Msa0243990:intron 50.0%
TCCAAGGGTGATTGGATGCA+AGG + chr2_2:21884767-21884786 Msa0243990:intron 50.0%
ACCTTGCATCCAATCACCCT+TGG - chr2_2:21884771-21884790 None:intergenic 50.0%
AGACATTCCGATGGCTGAAG+AGG + chr2_2:21884902-21884921 Msa0243990:intron 50.0%
TCCGATGGCTGAAGAGGTTA+AGG + chr2_2:21884908-21884927 Msa0243990:intron 50.0%
CACAAGGATCTTCAAAGGGG+CGG + chr2_2:21884974-21884993 Msa0243990:intron 50.0%
!! TGTGGAGCTACTTGGTGTAG+TGG + chr2_2:21885035-21885054 Msa0243990:intron 50.0%
!! GTGGAGCTACTTGGTGTAGT+GGG + chr2_2:21885036-21885055 Msa0243990:intron 50.0%
!! ACTTGGTGTAGTGGGAAGCA+AGG + chr2_2:21885044-21885063 Msa0243990:intron 50.0%
! CTTGGTGTAGTGGGAAGCAA+GGG + chr2_2:21885045-21885064 Msa0243990:intron 50.0%
AAGCAAGGGAAAGAGCAGCA+AGG + chr2_2:21885059-21885078 Msa0243990:intron 50.0%
GTACAAATCGGTGGCCGATT+TGG + chr2_2:21882930-21882949 Msa0243990:intron 50.0%
!! CGGTGGCCGATTTGGAAAAT+CGG + chr2_2:21882938-21882957 Msa0243990:intron 50.0%
!! TGGCCGATTTGGAAAATCGG+TGG + chr2_2:21882941-21882960 Msa0243990:intron 50.0%
!!! CGGCCACCGATTTTCCAAAT+CGG - chr2_2:21882947-21882966 None:intergenic 50.0%
!! GGAAAATCGGTGGCCGATTT+TGG + chr2_2:21882951-21882970 Msa0243990:intron 50.0%
!!! GCCGATTTTGGCTGCCTTTT+GGG + chr2_2:21882963-21882982 Msa0243990:intron 50.0%
!!! GATTTTGGCTGCCTTTTGGG+AGG + chr2_2:21882966-21882985 Msa0243990:intron 50.0%
CGAACAGAAAGCCTCCCAAA+AGG - chr2_2:21882980-21882999 None:intergenic 50.0%
GGAAAAATCGGTGGCCGATT+GGG + chr2_2:21883000-21883019 Msa0243990:intron 50.0%
GGTGGCCGATTGGGAAAAAT+CGG + chr2_2:21883009-21883028 Msa0243990:intron 50.0%
!!! GGCCACCGATTTTTCCCAAT+CGG - chr2_2:21883017-21883036 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG + chr2_2:21883149-21883168 Msa0243990:intron 50.0%
GATAGAGGGGGCTGAAACAA+GGG + chr2_2:21883150-21883169 Msa0243990:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG + chr2_2:21883268-21883287 Msa0243990:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG + chr2_2:21883392-21883411 Msa0243990:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG - chr2_2:21883399-21883418 None:intergenic 50.0%
GACCTGTGTCACCTGTAGTA+TGG - chr2_2:21886074-21886093 None:intergenic 50.0%
CTATGCACCTGGCAAAACGA+AGG - chr2_2:21886098-21886117 None:intergenic 50.0%
! CTTCGTTTTGCCAGGTGCAT+AGG + chr2_2:21886096-21886115 Msa0243990:CDS 50.0%
! ATTGGTCTCGGATGGAGCAA+TGG - chr2_2:21886175-21886194 None:intergenic 50.0%
GCCAATACAAGTTGCGGTAG+TGG - chr2_2:21886203-21886222 None:intergenic 50.0%
ACTCCTGGAAGGACTACACT+AGG - chr2_2:21886339-21886358 None:intergenic 50.0%
AGCCTGTAGACAAGATGCCA+AGG + chr2_2:21886382-21886401 Msa0243990:CDS 50.0%
GCCTGTAGACAAGATGCCAA+GGG + chr2_2:21886383-21886402 Msa0243990:CDS 50.0%
TCCCTTGGCATCTTGTCTAC+AGG - chr2_2:21886387-21886406 None:intergenic 50.0%
TACCAGGGAGTGATGCTATC+TGG - chr2_2:21886440-21886459 None:intergenic 50.0%
!!! GGCCGATTTTGGCTGCCTTT+TGG + chr2_2:21882962-21882981 Msa0243990:intron 55.0%
GGGAAAAATCGGTGGCCGAT+TGG + chr2_2:21882999-21883018 Msa0243990:intron 55.0%
GGCCGATTGGGAAAAATCGG+TGG + chr2_2:21883012-21883031 Msa0243990:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + chr2_2:21883272-21883291 Msa0243990:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + chr2_2:21883273-21883292 Msa0243990:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG + chr2_2:21883279-21883298 Msa0243990:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG + chr2_2:21883280-21883299 Msa0243990:intron 55.0%
TTTGACCTTTGCCCCACGGT+GGG - chr2_2:21883596-21883615 None:intergenic 55.0%
!! GAAGACCGAGATGGTGGACA+AGG + chr2_2:21883780-21883799 Msa0243990:intron 55.0%
GCACAAGACAATGGCACTCC+TGG - chr2_2:21883806-21883825 None:intergenic 55.0%
!! GGCATCGATGTGGGCAAAGT+TGG + chr2_2:21883870-21883889 Msa0243990:intron 55.0%
GGTGGAGTCAAAGGCCATCA+TGG + chr2_2:21883963-21883982 Msa0243990:intron 55.0%
! AGAGGGAATGGTGGAGGTAG+AGG + chr2_2:21884237-21884256 Msa0243990:intron 55.0%
TGGTGGAGGTAGAGGTAACC+GGG + chr2_2:21884245-21884264 Msa0243990:intron 55.0%
TGAGGATGCAGGTGCTCTGA+TGG + chr2_2:21884383-21884402 Msa0243990:intron 55.0%
! ATGCAGGTGCTCTGATGGTG+TGG + chr2_2:21884388-21884407 Msa0243990:intron 55.0%
CACTCAACATCAGCCTGGAG+AGG + chr2_2:21884493-21884512 Msa0243990:intron 55.0%
TCAACATCAGCCTGGAGAGG+CGG + chr2_2:21884496-21884515 Msa0243990:intron 55.0%
ATTCTTACCACCGCCTCTCC+AGG - chr2_2:21884509-21884528 None:intergenic 55.0%
! TGATCTACCGGTTGAGGTGG+AGG + chr2_2:21884534-21884553 Msa0243990:intron 55.0%
CCTTGAACCTCCACCTCAAC+CGG - chr2_2:21884544-21884563 None:intergenic 55.0%
CTCCATAGTCGTACCACTCC+CGG - chr2_2:21884638-21884657 None:intergenic 55.0%
GGTACGACTATGGAGGACCT+TGG + chr2_2:21884643-21884662 Msa0243990:intron 55.0%
CCACTAGAGCATAGCACCCA+AGG - chr2_2:21884663-21884682 None:intergenic 55.0%
! CCTTGGGTGCTATGCTCTAG+TGG + chr2_2:21884660-21884679 Msa0243990:intron 55.0%
GAAGGCGGAAGACATTCCGA+TGG + chr2_2:21884893-21884912 Msa0243990:intron 55.0%
!!! GGCCGATTTTGGCTGCCTTT+TGG + chr2_2:21882962-21882981 Msa0243990:intron 55.0%
GGGAAAAATCGGTGGCCGAT+TGG + chr2_2:21882999-21883018 Msa0243990:intron 55.0%
GGCCGATTGGGAAAAATCGG+TGG + chr2_2:21883012-21883031 Msa0243990:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + chr2_2:21883272-21883291 Msa0243990:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + chr2_2:21883273-21883292 Msa0243990:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG + chr2_2:21883279-21883298 Msa0243990:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG + chr2_2:21883280-21883299 Msa0243990:intron 55.0%
! TATCTGGATTACGCGGGCTG+TGG + chr2_2:21885963-21885982 Msa0243990:CDS 55.0%
! CAGGTCACCTTCGTTTTGCC+AGG + chr2_2:21886088-21886107 Msa0243990:CDS 55.0%
!! TGTCGGTGCTAACTCCTGGA+AGG - chr2_2:21886350-21886369 None:intergenic 55.0%
!! AGCTTGTCGGTGCTAACTCC+TGG - chr2_2:21886354-21886373 None:intergenic 55.0%
! CCAGCAATGAAGTGCTCCCT+TGG - chr2_2:21886402-21886421 None:intergenic 55.0%
!! CCAAGGGAGCACTTCATTGC+TGG + chr2_2:21886399-21886418 Msa0243990:CDS 55.0%
CAGGGAGTGATGCTATCTGG+AGG - chr2_2:21886437-21886456 None:intergenic 55.0%
CTCCAGATAGCATCACTCCC+TGG + chr2_2:21886435-21886454 Msa0243990:CDS 55.0%
CAACAATTGGCGCCCACCGT+GGG + chr2_2:21883581-21883600 Msa0243990:intron 60.0%
AACAATTGGCGCCCACCGTG+GGG + chr2_2:21883582-21883601 Msa0243990:intron 60.0%
CTTTGACCTTTGCCCCACGG+TGG - chr2_2:21883597-21883616 None:intergenic 60.0%
CACCGTGGGGCAAAGGTCAA+AGG + chr2_2:21883595-21883614 Msa0243990:intron 60.0%
ACCGGTCACCATGACACGAG+CGG + chr2_2:21883756-21883775 Msa0243990:intron 60.0%
TCCGCTCGTGTCATGGTGAC+CGG - chr2_2:21883760-21883779 None:intergenic 60.0%
GGTCTTCTCCGCTCGTGTCA+TGG - chr2_2:21883767-21883786 None:intergenic 60.0%
ACGAGCGGAGAAGACCGAGA+TGG + chr2_2:21883771-21883790 Msa0243990:intron 60.0%
AGCGGAGAAGACCGAGATGG+TGG + chr2_2:21883774-21883793 Msa0243990:intron 60.0%
!! CCTGGCCTTGTCCACCATCT+CGG - chr2_2:21883788-21883807 None:intergenic 60.0%
!! AACCAACCGCGGCATCGATG+TGG + chr2_2:21883860-21883879 Msa0243990:intron 60.0%
!! ACCAACCGCGGCATCGATGT+GGG + chr2_2:21883861-21883880 Msa0243990:intron 60.0%
CTTTGCCCACATCGATGCCG+CGG - chr2_2:21883869-21883888 None:intergenic 60.0%
GGTGGAGGTAGAGGTAACCG+GGG + chr2_2:21884246-21884265 Msa0243990:intron 60.0%
TTAGTGGAGCGGTGACCGTC+TGG + chr2_2:21884458-21884477 Msa0243990:intron 60.0%
CCGGTTGAGGTGGAGGTTCA+AGG + chr2_2:21884541-21884560 Msa0243990:intron 60.0%
GGAGTTGAACACACCGGGAG+TGG + chr2_2:21884622-21884641 Msa0243990:intron 60.0%
CACCGGGAGTGGTACGACTA+TGG + chr2_2:21884633-21884652 Msa0243990:intron 60.0%
CGGGAGTGGTACGACTATGG+AGG + chr2_2:21884636-21884655 Msa0243990:intron 60.0%
!! GAAGACGGAAGGCATTCCGG+AGG + chr2_2:21884703-21884722 Msa0243990:intron 60.0%
GCTGCTCTCTCCCCCAGACT+AGG + chr2_2:21883383-21883402 Msa0243990:intron 65.0%
GCAACAATTGGCGCCCACCG+TGG + chr2_2:21883580-21883599 Msa0243990:intron 65.0%
!! CCGAGATGGTGGACAAGGCC+AGG + chr2_2:21883785-21883804 Msa0243990:intron 65.0%
ACATCAGCCTGGAGAGGCGG+TGG + chr2_2:21884499-21884518 Msa0243990:intron 65.0%
GCTGCTCTCTCCCCCAGACT+AGG + chr2_2:21883383-21883402 Msa0243990:intron 65.0%
GCCCACATCGATGCCGCGGT+TGG - chr2_2:21883865-21883884 None:intergenic 70.0%
TGGCGCCCACCGTGGGGCAA+AGG + chr2_2:21883588-21883607 Msa0243990:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 21882688 21886557 21882688 ID=Msa0243990;Name=Msa0243990
chr2_2 mRNA 21882688 21886557 21882688 ID=Msa0243990-mRNA-1;Parent=Msa0243990;Name=Msa0243990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|257
chr2_2 exon 21882688 21882815 21882688 ID=Msa0243990-mRNA-1:exon:8546;Parent=Msa0243990-mRNA-1
chr2_2 exon 21885912 21886557 21885912 ID=Msa0243990-mRNA-1:exon:8547;Parent=Msa0243990-mRNA-1
chr2_2 CDS 21882688 21882815 21882688 ID=Msa0243990-mRNA-1:cds;Parent=Msa0243990-mRNA-1
chr2_2 CDS 21885912 21886557 21885912 ID=Msa0243990-mRNA-1:cds;Parent=Msa0243990-mRNA-1
Gene Sequence

>Msa0243990

ATGTCTAAAATCTTTCGGGAATACATTGGTGTGAAGCCATTCTCAACAAATTTAAGGGATTTTCCAGTTCAAATAATCAAAACCAATATCTCAGAATTCCACTTCATTTTGGGCTTTGCCACTGAGGACATTGGAGGTCATGACGCCGTTAAAACTCCATTCAATCCTGTTGAGGAAACTATCTGGATTACGCGGGCTGTGGCTTCACTCAAAGTGATCATCCAAAAATACAAGGATCAAACCGGCAACATAATTGATGGCATTGACATTAATTATCTTAACGTCTTCCATACTACAGGTGACACAGGTCACCTTCGTTTTGCCAGGTGCATAGGGCAAGTTATAACTCAACTTAAGAATGATAATTATCTACGCATCAAGATCGTGTCCATTGCTCCATCCGAGACCAATGAAATCCACTACCGCAACTTGTATTGGCAAAATGAGGCCAATATAAATTGGGTTAACTACCAGTTCTACAACCAATCTAAACCTGTATCCACACTTGACGACTTTCTAAAACTCTATGACCAGGTATCAAGAAACTACAAACCTAGTGTAGTCCTTCCAGGAGTTAGCACCGACAAGCTTCACATTGAGCCTGTAGACAAGATGCCAAGGGAGCACTTCATTGCTGGCTGCAGACATCTCCTCCAGATAGCATCACTCCCTGGTATTTTTCTTTGGAACGCTGATGACTCTACAATTCCTCTACCCAATGAGAATAAACCTTTCGTTTTAGAGGATATCTTGCAAAGCCTCCTCATAAGTTAA

Protein sequence

>Msa0243990

MSKIFREYIGVKPFSTNLRDFPVQIIKTNISEFHFILGFATEDIGGHDAVKTPFNPVEETIWITRAVASLKVIIQKYKDQTGNIIDGIDINYLNVFHTTGDTGHLRFARCIGQVITQLKNDNYLRIKIVSIAPSETNEIHYRNLYWQNEANINWVNYQFYNQSKPVSTLDDFLKLYDQVSRNYKPSVVLPGVSTDKLHIEPVDKMPREHFIAGCRHLLQIASLPGIFLWNADDSTIPLPNENKPFVLEDILQSLLIS*