AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0084160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0084160 MtrunA17_Chr1g0197791 67.041 267 39 3 1 220 1 265 6.05e-115 328
Msa0084160 MtrunA17_Chr3g0087611 62.191 283 42 5 1 220 1 281 2.65e-108 312
Msa0084160 MtrunA17_Chr1g0197761 58.088 272 56 4 1 216 1 270 8.11e-100 290
Msa0084160 MtrunA17_Chr1g0197751 75.301 166 37 2 52 215 29 192 2.47e-82 244
Msa0084160 MtrunA17_Chr3g0100011 59.574 141 53 2 61 199 137 275 3.95e-48 162
Msa0084160 MtrunA17_Chr3g0095851 41.111 270 100 6 1 214 2 268 5.47e-48 159
Msa0084160 MtrunA17_Chr3g0095861 41.111 270 100 6 1 214 1 267 5.50e-48 159
Msa0084160 MtrunA17_Chr3g0100021 55.696 158 63 4 47 199 83 238 1.32e-47 157
Msa0084160 MtrunA17_Chr3g0100031 55.263 152 62 3 56 204 105 253 1.19e-45 152
Msa0084160 MtrunA17_Chr3g0096161 39.852 271 100 8 1 212 1 267 1.44e-42 145
Msa0084160 MtrunA17_Chr1g0197801 39.394 264 97 8 1 219 1 246 1.17e-41 141
Msa0084160 MtrunA17_Chr1g0197771 36.538 260 106 5 1 203 1 258 9.63e-38 132
Msa0084160 MtrunA17_Chr3g0104481 36.123 227 115 8 18 214 12 238 1.33e-27 105
Msa0084160 MtrunA17_Chr8g0367061 38.421 190 91 11 34 204 78 260 8.71e-23 92.8
Msa0084160 MtrunA17_Chr8g0345451 43.151 146 76 5 61 201 112 255 1.54e-22 92.4
Msa0084160 MtrunA17_Chr8g0367051 39.157 166 73 9 61 204 105 264 2.45e-22 91.7
Msa0084160 MtrunA17_Chr8g0367071 40.764 157 76 6 61 204 120 272 2.46e-22 94.7
Msa0084160 MtrunA17_Chr5g0411771 36.076 158 85 6 61 204 131 286 3.72e-22 91.7
Msa0084160 MtrunA17_Chr5g0411761 38.608 158 81 7 61 204 130 285 6.52e-22 90.9
Msa0084160 MtrunA17_Chr5g0411751 41.139 158 77 9 61 204 123 278 1.95e-21 89.7
Msa0084160 MtrunA17_Chr8g0367031 36.095 169 92 7 48 204 94 258 2.28e-20 86.3
Msa0084160 MtrunA17_Chr5g0411741 36.943 157 84 6 61 204 123 277 6.39e-20 85.5
Msa0084160 MtrunA17_Chr4g0011021 37.427 171 89 8 37 203 104 260 6.82e-20 85.5
Msa0084160 MtrunA17_Chr8g0367041 34.524 168 94 7 48 203 94 257 2.23e-19 84.0
Msa0084160 MtrunA17_Chr5g0411731 36.875 160 86 7 61 206 117 275 1.03e-18 82.0
Msa0084160 MtrunA17_Chr5g0411721 37.975 158 83 8 61 206 128 282 1.52e-17 79.0
Msa0084160 MtrunA17_Chr4g0049601 37.179 156 84 6 61 204 113 266 2.78e-17 80.1
Msa0084160 MtrunA17_Chr1g0197821 31.839 223 96 9 1 217 1 173 1.27e-14 69.3
Msa0084160 MtrunA17_Chr8g0367021 35.625 160 87 7 58 206 104 258 2.64e-14 69.7
Msa0084160 MtrunA17_Chr4g0049551 34.868 152 81 7 61 198 113 260 1.29e-12 66.2
Msa0084160 MtrunA17_Chr1g0197811 46.269 67 32 3 58 123 12 75 5.24e-12 59.7
Msa0084160 MtrunA17_Chr8g0366991 31.414 191 114 8 39 215 182 369 8.31e-12 63.9
Msa0084160 MtrunA17_Chr7g0274651 35.404 161 81 9 61 204 116 270 8.67e-12 63.9
Msa0084160 MtrunA17_Chr8g0366941 32.335 167 96 7 62 215 111 273 2.94e-11 61.6
Msa0084160 MtrunA17_Chr4g0049611 38.710 124 55 8 93 204 149 263 6.42e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0084160 AT5G10530.1 37.179 156 83 6 62 204 100 253 3.23e-16 77.4
Msa0084160 AT5G65600.1 33.557 149 87 4 58 194 113 261 1.65e-13 69.3

Find 51 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATCAGTTGGAGCGTTTC+CGG 0.208844 1_2:+63456262 None:intergenic
CATGCATTAATTATCTTATA+TGG 0.217894 1_2:+63455770 None:intergenic
AATATGGTACCTCATAGATT+TGG 0.272536 1_2:+63456100 None:intergenic
CTATCTGGTGCTTCAGTAAC+TGG 0.316918 1_2:-63455876 Msa0084160:CDS
AGACCAAACCTAACCGTGTT+AGG 0.331065 1_2:+63455897 None:intergenic
GAAGGAAATGTCAGAGCATT+AGG 0.331482 1_2:+63463139 None:intergenic
AATGCTTACAATCAATTTGT+TGG 0.337940 1_2:-63456158 Msa0084160:CDS
CTCATAGATTTGGGATCATA+AGG 0.359980 1_2:+63456110 None:intergenic
AACAACACTCAATGTGTTAG+AGG 0.369181 1_2:+63455983 None:intergenic
AGTTGACGTTGGTTCCAATA+TGG 0.371704 1_2:+63456084 None:intergenic
AATGCTCTGACATTTCCTTC+TGG 0.381773 1_2:-63463136 Msa0084160:intron
ACGGTTAGGTTTGGTCTATC+TGG 0.383443 1_2:-63455891 Msa0084160:CDS
TTTCTCTCAAGGTCATGAAA+TGG 0.388433 1_2:-63456055 Msa0084160:CDS
AAATCTATGAGGTACCATAT+TGG 0.393883 1_2:-63456098 Msa0084160:CDS
GATCATAAGGATTGGTATAA+AGG 0.401771 1_2:+63456123 None:intergenic
AACTCAGAAAGTGCACGTTT+TGG 0.408486 1_2:-63456197 Msa0084160:CDS
CTCCCTAACACGGTTAGGTT+TGG 0.415201 1_2:-63455900 Msa0084160:CDS
ATATGGTACCTCATAGATTT+GGG 0.415491 1_2:+63456101 None:intergenic
ATGGTAGAAAATTTGCCATT+GGG 0.420085 1_2:+63455951 None:intergenic
ATGAAATGGGAATGGGTGAC+TGG 0.427491 1_2:-63456041 Msa0084160:CDS
CTGTACTCCCTAACACGGTT+AGG 0.428279 1_2:-63455905 Msa0084160:CDS
TTCTCTCAAGGTCATGAAAT+GGG 0.430289 1_2:-63456054 Msa0084160:CDS
AAACGTGCACTTTCTGAGTT+GGG 0.453097 1_2:+63456200 None:intergenic
CAGAGCATTAGGAGTGAACT+TGG 0.474972 1_2:+63463150 None:intergenic
AAAACGTGCACTTTCTGAGT+TGG 0.481047 1_2:+63456199 None:intergenic
ACCGGAAACGCTCCAACTGA+TGG 0.487866 1_2:-63456263 Msa0084160:CDS
CTTGGTGAAATTGAAAGAAT+GGG 0.489127 1_2:+63463168 None:intergenic
ACTTGGTGAAATTGAAAGAA+TGG 0.490664 1_2:+63463167 None:intergenic
CAAATCAACGATTTGAGCAA+TGG 0.492987 1_2:+63455932 None:intergenic
AATGGTAGAAAATTTGCCAT+TGG 0.495781 1_2:+63455950 None:intergenic
TCAAGGTCATGAAATGGGAA+TGG 0.510357 1_2:-63456049 Msa0084160:CDS
AAGTGCTGAATGACCATGAA+TGG 0.510801 1_2:+63455838 None:intergenic
TGTGTTAGAGGGAGAGTCAT+AGG 0.513568 1_2:+63455995 None:intergenic
CCTAAAACAAGTTCATGAGT+TGG 0.516836 1_2:+63463247 None:intergenic
CAAGGTCATGAAATGGGAAT+GGG 0.518239 1_2:-63456048 Msa0084160:CDS
CAGCACACGACATCCATTCA+TGG 0.520101 1_2:-63455851 Msa0084160:CDS
CAACTCTTTAATTTCTCTCA+AGG 0.521126 1_2:-63456066 Msa0084160:CDS
AAGAACATCAATCCATCAGT+TGG 0.521731 1_2:+63456251 None:intergenic
GACCAAACCTAACCGTGTTA+GGG 0.528956 1_2:+63455898 None:intergenic
AGATTTGGGATCATAAGGAT+TGG 0.548372 1_2:+63456115 None:intergenic
CTTATGATCCCAAATCTATG+AGG 0.558220 1_2:-63456109 Msa0084160:CDS
TCATTCGTAGTAGAGACCAC+CGG 0.586383 1_2:-63456281 Msa0084160:intron
GTTGTTGTCACTTACCCCAA+TGG 0.586471 1_2:-63455966 Msa0084160:CDS
AGAAATTAAAGAGTTGACGT+TGG 0.590878 1_2:+63456073 None:intergenic
TGGTAGAAAATTTGCCATTG+GGG 0.595930 1_2:+63455952 None:intergenic
TATGGTTTGTAACTTGTCTG+TGG 0.599274 1_2:+63455788 None:intergenic
GGTGGAATCACAGTGTCTTG+TGG 0.603572 1_2:+63456221 None:intergenic
ATCAGTTGGAGCGTTTCCGG+TGG 0.608436 1_2:+63456265 None:intergenic
CGTGCACTTTCTGAGTTGGG+TGG 0.613896 1_2:+63456203 None:intergenic
ACAACACTCAATGTGTTAGA+GGG 0.619552 1_2:+63455984 None:intergenic
GAAAACTGTACTCCCTAACA+CGG 0.659450 1_2:-63455910 Msa0084160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTAATTAGTTGATA+TGG + chr1_2:63456445-63456464 None:intergenic 10.0%
!!! TATGTCAATTTTATTTTATT+TGG + chr1_2:63457855-63457874 None:intergenic 10.0%
!! ATCTTAATATATATTAAATG+AGG - chr1_2:63460099-63460118 Msa0084160:intron 10.0%
!!! AAATATTTTTTGAACTAATT+TGG + chr1_2:63460929-63460948 None:intergenic 10.0%
!!! TTTTTTTATTTTTTTTGTTG+TGG + chr1_2:63461254-63461273 None:intergenic 10.0%
!!! AAATATTTAATTAGTTGATA+TGG + chr1_2:63456445-63456464 None:intergenic 10.0%
!! ATATTCCAATAATATTATGT+GGG + chr1_2:63456577-63456596 None:intergenic 15.0%
!! TATATTCCAATAATATTATG+TGG + chr1_2:63456578-63456597 None:intergenic 15.0%
!! TAATTATATCAGAATTCTTT+AGG - chr1_2:63456648-63456667 Msa0084160:intron 15.0%
!! AAGTATAGAACATAAAATAA+AGG - chr1_2:63457042-63457061 Msa0084160:intron 15.0%
!!! AAATGAAATGACATAATTTT+CGG + chr1_2:63457667-63457686 None:intergenic 15.0%
!! TAAAATTGACATATTAAACT+AGG - chr1_2:63457862-63457881 Msa0084160:intron 15.0%
!! TTAAATATAGTGTTTCTTAA+TGG + chr1_2:63458104-63458123 None:intergenic 15.0%
!!! TAGTTTGCTTATTATAATTA+TGG + chr1_2:63458144-63458163 None:intergenic 15.0%
!! TAATAGAACAAAATTAAATG+AGG + chr1_2:63458370-63458389 None:intergenic 15.0%
!!! TCAAAATTTTCTTAATTTGT+GGG - chr1_2:63458443-63458462 Msa0084160:intron 15.0%
!! TTTGTATTTAAAAGACTATT+TGG + chr1_2:63458653-63458672 None:intergenic 15.0%
!!! TTTTTTTTGATTGTCATTAA+TGG + chr1_2:63458682-63458701 None:intergenic 15.0%
!! AAAGATATATCAATTTAGAA+TGG + chr1_2:63458744-63458763 None:intergenic 15.0%
!! AATAATATTAACATTATCCT+TGG + chr1_2:63459364-63459383 None:intergenic 15.0%
!!! TATAAGATTCAATTTTCTTT+TGG + chr1_2:63460718-63460737 None:intergenic 15.0%
!!! AAAGTTTATTTTGAGATATT+AGG + chr1_2:63461036-63461055 None:intergenic 15.0%
!! ATATTCCAATAATATTATGT+GGG + chr1_2:63456577-63456596 None:intergenic 15.0%
!! TATATTCCAATAATATTATG+TGG + chr1_2:63456578-63456597 None:intergenic 15.0%
!!! TAATTATATTAGCTTTTTGT+TGG + chr1_2:63462588-63462607 None:intergenic 15.0%
!! ATATTCCAATAATATTATGT+GGG + chr1_2:63456577-63456596 None:intergenic 15.0%
!! TATATTCCAATAATATTATG+TGG + chr1_2:63456578-63456597 None:intergenic 15.0%
!! ATTCATAATTGTTGAACATA+TGG + chr1_2:63456058-63456077 None:intergenic 20.0%
!! TATCAAGGATATTAAGAATT+AGG - chr1_2:63456140-63456159 Msa0084160:CDS 20.0%
!! ATCAAGGATATTAAGAATTA+GGG - chr1_2:63456141-63456160 Msa0084160:CDS 20.0%
!!! ATATTAAGAATTAGGGTATT+AGG - chr1_2:63456148-63456167 Msa0084160:CDS 20.0%
!! AAGGATATTAGATTTCTAAT+TGG + chr1_2:63456478-63456497 None:intergenic 20.0%
!! AGTGATCAAATTAAGTAATA+AGG + chr1_2:63456497-63456516 None:intergenic 20.0%
!! ATTAGCTATTTATCATTTGT+GGG + chr1_2:63456532-63456551 None:intergenic 20.0%
!! TATTAGCTATTTATCATTTG+TGG + chr1_2:63456533-63456552 None:intergenic 20.0%
!! ATCTAAAGATAAATAGCATT+CGG + chr1_2:63456681-63456700 None:intergenic 20.0%
!!! TGTTCTATACTTTTGTTTTT+TGG + chr1_2:63457034-63457053 None:intergenic 20.0%
!! TTCAACAACAATAATCTATA+AGG - chr1_2:63457186-63457205 Msa0084160:intron 20.0%
!! TAAGGCAATAAACTTTATAA+AGG - chr1_2:63457204-63457223 Msa0084160:intron 20.0%
!! CAAAGTTTGAATTGTTAAAA+AGG + chr1_2:63457464-63457483 None:intergenic 20.0%
!!! ATGATTTTATTATACGCATT+TGG + chr1_2:63457532-63457551 None:intergenic 20.0%
!! ATCATATATAAGAATCCTAT+AGG - chr1_2:63457547-63457566 Msa0084160:intron 20.0%
!! GATAATATTATGAAGAATTG+TGG + chr1_2:63457921-63457940 None:intergenic 20.0%
!! AATTACTTTATGAGAATTTG+TGG - chr1_2:63457958-63457977 Msa0084160:intron 20.0%
!! CAAATTTCTTAACATATAAG+TGG - chr1_2:63457995-63458014 Msa0084160:intron 20.0%
!!! ATTGACACAAAAGTTTTATT+CGG - chr1_2:63458051-63458070 Msa0084160:intron 20.0%
!!! TAAATTGTTAAGTTTTCTTG+AGG + chr1_2:63458419-63458438 None:intergenic 20.0%
!!! CTCAAAATTTTCTTAATTTG+TGG - chr1_2:63458442-63458461 Msa0084160:intron 20.0%
!! AAAATACCTCAAAAAGATAA+GGG + chr1_2:63458813-63458832 None:intergenic 20.0%
!!! TATTTTCTTTGCTTAAACTA+AGG + chr1_2:63459164-63459183 None:intergenic 20.0%
!! TGAAATATCATATAGATTAG+AGG + chr1_2:63459216-63459235 None:intergenic 20.0%
!!! TCTTAAAAGTTCTAACTTTT+AGG + chr1_2:63459395-63459414 None:intergenic 20.0%
!! TTAAGATTATCTAGTAATTG+CGG + chr1_2:63460086-63460105 None:intergenic 20.0%
!!! TAATTTTCCATGTGAATAAT+AGG + chr1_2:63460162-63460181 None:intergenic 20.0%
!! ACATTTCACAGTAAATTAAA+TGG - chr1_2:63460374-63460393 Msa0084160:intron 20.0%
!! CATTTCACAGTAAATTAAAT+GGG - chr1_2:63460375-63460394 Msa0084160:intron 20.0%
!! AAGGAAATATGAATACATAA+TGG + chr1_2:63461118-63461137 None:intergenic 20.0%
!! ATTTGCATCTAAAGAATTAT+TGG + chr1_2:63461186-63461205 None:intergenic 20.0%
!! AAAAAAAAACTAGAAAAGCT+AGG - chr1_2:63461268-63461287 Msa0084160:intron 20.0%
!! AAGACTGTCAATTAATTAAT+TGG - chr1_2:63461325-63461344 Msa0084160:intron 20.0%
!! TAAATTAAGATAACTCAAGT+AGG + chr1_2:63461429-63461448 None:intergenic 20.0%
!! ATATGGTAAAAATCTTTGAT+TGG + chr1_2:63461622-63461641 None:intergenic 20.0%
!! TATCTCATATTTCATGAATT+AGG - chr1_2:63461878-63461897 Msa0084160:intron 20.0%
!! ATCTCATATTTCATGAATTA+GGG - chr1_2:63461879-63461898 Msa0084160:intron 20.0%
!! ATTCATAATTGTTGAACATA+TGG + chr1_2:63456058-63456077 None:intergenic 20.0%
!! TATCAAGGATATTAAGAATT+AGG - chr1_2:63456140-63456159 Msa0084160:CDS 20.0%
!! ATCAAGGATATTAAGAATTA+GGG - chr1_2:63456141-63456160 Msa0084160:CDS 20.0%
!!! ATATTAAGAATTAGGGTATT+AGG - chr1_2:63456148-63456167 Msa0084160:CDS 20.0%
!! AAGACTATTAGATTTCTAAT+TGG + chr1_2:63462447-63462466 None:intergenic 20.0%
!! ATTAGCTATTTATCATTTGT+GGG + chr1_2:63456532-63456551 None:intergenic 20.0%
!! TATTAGCTATTTATCATTTG+TGG + chr1_2:63456533-63456552 None:intergenic 20.0%
! CAACAATTATGAATCAATAG+CGG - chr1_2:63456064-63456083 Msa0084160:CDS 25.0%
! ACATTGAACATGATTATGAT+CGG - chr1_2:63456098-63456117 Msa0084160:CDS 25.0%
! ATTTGATCACTAATCAACTA+AGG - chr1_2:63456506-63456525 Msa0084160:intron 25.0%
! ATTTGCCCACATAATATTAT+TGG - chr1_2:63456569-63456588 Msa0084160:intron 25.0%
! TAGATTTCAATCTTACAATC+TGG - chr1_2:63456696-63456715 Msa0084160:intron 25.0%
! ATGTCATTATATAACTTGAG+TGG - chr1_2:63457253-63457272 Msa0084160:intron 25.0%
! ACATTAGAAATCTGACAATT+TGG + chr1_2:63457399-63457418 None:intergenic 25.0%
! GTTCTCTTTAATAATCCTTA+TGG - chr1_2:63457435-63457454 Msa0084160:intron 25.0%
! TGAATTCATATACTTCCTAA+TGG - chr1_2:63457597-63457616 Msa0084160:intron 25.0%
! GAATTCATATACTTCCTAAT+GGG - chr1_2:63457598-63457617 Msa0084160:intron 25.0%
!! ATTCTTCTCAAGGTATTATT+CGG + chr1_2:63457722-63457741 None:intergenic 25.0%
! CATAAAGTAATTGTCTCATT+TGG + chr1_2:63457950-63457969 None:intergenic 25.0%
! GTGACATTAATGATACAATA+TGG + chr1_2:63458082-63458101 None:intergenic 25.0%
! GTGACATTCTATATTGTTTA+AGG + chr1_2:63458492-63458511 None:intergenic 25.0%
! GAAAATACCTCAAAAAGATA+AGG + chr1_2:63458814-63458833 None:intergenic 25.0%
! ATTCATAAAGTGTGCAAATA+AGG + chr1_2:63458876-63458895 None:intergenic 25.0%
! GGTATTTCATGAAGATTATT+AGG + chr1_2:63459095-63459114 None:intergenic 25.0%
!!! ATAGATTAGAGGTGTTATTT+AGG + chr1_2:63459205-63459224 None:intergenic 25.0%
! ACAATAATATCAATTGCTAG+TGG - chr1_2:63459532-63459551 Msa0084160:intron 25.0%
!!! ATCCAAAGATTGTGTTTTAA+TGG + chr1_2:63459772-63459791 None:intergenic 25.0%
! TTAACGTAATGATCAAACAT+TGG - chr1_2:63459820-63459839 Msa0084160:intron 25.0%
! TAATTATCCATGTGGATAAT+AGG + chr1_2:63459883-63459902 None:intergenic 25.0%
! TTATAACGTAATTATCCATG+TGG + chr1_2:63459891-63459910 None:intergenic 25.0%
! ATCACATGTATGTAAGTATT+CGG - chr1_2:63459927-63459946 Msa0084160:intron 25.0%
! TGCATATGATAATAAATGTG+TGG + chr1_2:63460196-63460215 None:intergenic 25.0%
!! GAATTTTTCTTCACACTTAA+GGG + chr1_2:63460490-63460509 None:intergenic 25.0%
!! TGAATTTTTCTTCACACTTA+AGG + chr1_2:63460491-63460510 None:intergenic 25.0%
! ATGTATTGTCTTACACATAT+TGG + chr1_2:63460550-63460569 None:intergenic 25.0%
!! TAAAGTTTGTTTCCTTACTT+AGG + chr1_2:63460829-63460848 None:intergenic 25.0%
! GGCAATTCTTGATATATATT+AGG + chr1_2:63461015-63461034 None:intergenic 25.0%
!! ATTAATTGGCTCAATAGTAA+TGG - chr1_2:63461339-63461358 Msa0084160:intron 25.0%
!!! TTGTTTTGTTTGATTCAAAG+TGG + chr1_2:63461586-63461605 None:intergenic 25.0%
! GTAAAAATCTTTGATTGGAA+AGG + chr1_2:63461617-63461636 None:intergenic 25.0%
! AAAACTGTTGCATAAAGTAA+AGG - chr1_2:63461702-63461721 Msa0084160:intron 25.0%
! GTAAAGGAAATCGAATATTA+TGG - chr1_2:63461718-63461737 Msa0084160:intron 25.0%
!! GAGATATTATGTTTTTCTTG+CGG + chr1_2:63461864-63461883 None:intergenic 25.0%
! CAACAATTATGAATCAATAG+CGG - chr1_2:63456064-63456083 Msa0084160:CDS 25.0%
! ACATTGAACATGATTATGAT+CGG - chr1_2:63456098-63456117 Msa0084160:CDS 25.0%
! ATTTGATCACTAATCAACTA+AGG - chr1_2:63456506-63456525 Msa0084160:intron 25.0%
! TTAGCTATTTATCATTTGTG+GGG + chr1_2:63456531-63456550 None:intergenic 25.0%
! ATTTGCCCACATAATATTAT+TGG - chr1_2:63456569-63456588 Msa0084160:intron 25.0%
! ATTTGCCCACATAATATTAT+TGG - chr1_2:63456569-63456588 Msa0084160:intron 25.0%
! AATGCTTACAATCAATTTGT+TGG - chr1_2:63462898-63462917 Msa0084160:intron 25.0%
CTTGGTGAAATTGAAAGAAT+GGG + chr1_2:63455891-63455910 None:intergenic 30.0%
! ACTTGGTGAAATTGAAAGAA+TGG + chr1_2:63455892-63455911 None:intergenic 30.0%
ATGCTCAAACGTTAAACAAT+GGG - chr1_2:63455960-63455979 Msa0084160:CDS 30.0%
GAGAAAACTGTTGGAAATTT+AGG - chr1_2:63456004-63456023 Msa0084160:CDS 30.0%
! ACGACATGTTTGATTTATCA+AGG - chr1_2:63456125-63456144 Msa0084160:CDS 30.0%
! ATCTGAAACAAACATCAACA+CGG - chr1_2:63456233-63456252 Msa0084160:CDS 30.0%
ATCCAATATAAAAGAGGCTA+TGG + chr1_2:63456363-63456382 None:intergenic 30.0%
! ATAGCCTCTTTTATATTGGA+TGG - chr1_2:63456362-63456381 Msa0084160:intron 30.0%
! TTTTATATTGGATGGCCATT+AGG - chr1_2:63456370-63456389 Msa0084160:intron 30.0%
TTTATATTGGATGGCCATTA+GGG - chr1_2:63456371-63456390 Msa0084160:intron 30.0%
TTTCCCATTATTCCGTTAAT+GGG - chr1_2:63456394-63456413 Msa0084160:intron 30.0%
TCCACCTCATACATTAATAA+TGG - chr1_2:63456719-63456738 Msa0084160:intron 30.0%
CCACCTCATACATTAATAAT+GGG - chr1_2:63456720-63456739 Msa0084160:intron 30.0%
! CTTGATGACATAGATTGATA+TGG - chr1_2:63456808-63456827 Msa0084160:intron 30.0%
! ATCTCACTAAAGTTTTCAGT+TGG + chr1_2:63456894-63456913 None:intergenic 30.0%
TGCACAAAATGATACAGTAA+TGG - chr1_2:63456941-63456960 Msa0084160:intron 30.0%
TCATATGGTTGTTGTCATTA+AGG + chr1_2:63457091-63457110 None:intergenic 30.0%
! ACTTGGTTGCATTTTGTTAA+AGG + chr1_2:63457289-63457308 None:intergenic 30.0%
CTGTAAGTATTTATGTCACT+TGG + chr1_2:63457306-63457325 None:intergenic 30.0%
TTACAGTAATTTCCTGAATC+AGG - chr1_2:63457320-63457339 Msa0084160:intron 30.0%
TATAATACACATCCTGATTC+AGG + chr1_2:63457335-63457354 None:intergenic 30.0%
TTGTTAAAAAGGCAACCATA+AGG + chr1_2:63457453-63457472 None:intergenic 30.0%
GCGGATATAATAAGATTGTT+TGG + chr1_2:63457504-63457523 None:intergenic 30.0%
TTATACGCATTTGGAAATAG+CGG + chr1_2:63457523-63457542 None:intergenic 30.0%
ATACTTAGAGATTCTTCTCA+AGG + chr1_2:63457732-63457751 None:intergenic 30.0%
TGAAATGCCTAATACAAAAG+AGG - chr1_2:63457752-63457771 Msa0084160:intron 30.0%
!! ATGTTTGTTATGTGAAACCA+AGG + chr1_2:63457819-63457838 None:intergenic 30.0%
GTCAATTGATACAGAGTAAA+TGG + chr1_2:63458037-63458056 None:intergenic 30.0%
! AGTTTCTTAACTTGATTGAG+AGG - chr1_2:63458259-63458278 Msa0084160:intron 30.0%
AGTATATTTGGATCTTCATG+AGG + chr1_2:63458299-63458318 None:intergenic 30.0%
TTCTTGAGGATATTGAGTTT+GGG + chr1_2:63458405-63458424 None:intergenic 30.0%
TTTCTTGAGGATATTGAGTT+TGG + chr1_2:63458406-63458425 None:intergenic 30.0%
! TATTTGCCCTTATCTTTTTG+AGG - chr1_2:63458804-63458823 Msa0084160:intron 30.0%
GTTTAAAGACTTGATATCGA+TGG + chr1_2:63459514-63459533 None:intergenic 30.0%
! AATTGCTAGTGGTATTTTAC+AGG - chr1_2:63459543-63459562 Msa0084160:intron 30.0%
CACCATTAAAACACAATCTT+TGG - chr1_2:63459767-63459786 Msa0084160:intron 30.0%
AAAGGTGACTATTATTTGAC+AGG + chr1_2:63459854-63459873 None:intergenic 30.0%
TGTCAAATAATAGTCACCTT+TGG - chr1_2:63459853-63459872 Msa0084160:intron 30.0%
GTCAAATAATAGTCACCTTT+GGG - chr1_2:63459854-63459873 Msa0084160:intron 30.0%
TACATGTGATGGTAAATATG+TGG + chr1_2:63459917-63459936 None:intergenic 30.0%
GAATACTTACATACATGTGA+TGG + chr1_2:63459928-63459947 None:intergenic 30.0%
TAAGGTGACTATTATTTGAC+AGG + chr1_2:63460133-63460152 None:intergenic 30.0%
TGTCAAATAATAGTCACCTT+AGG - chr1_2:63459853-63459872 Msa0084160:intron 30.0%
GTCAAATAATAGTCACCTTA+GGG - chr1_2:63460133-63460152 Msa0084160:intron 30.0%
ATCATATGCACTGAATTATC+CGG - chr1_2:63460206-63460225 Msa0084160:intron 30.0%
TAGTATGGAATTATTCATGC+GGG + chr1_2:63460264-63460283 None:intergenic 30.0%
GTAGTATGGAATTATTCATG+CGG + chr1_2:63460265-63460284 None:intergenic 30.0%
AACTTACAAAAGACGTAGTA+TGG + chr1_2:63460279-63460298 None:intergenic 30.0%
TGTGAAATGTCAAGTAATTG+CGG + chr1_2:63460364-63460383 None:intergenic 30.0%
CACAGTAAATTAAATGGGAA+TGG - chr1_2:63460380-63460399 Msa0084160:intron 30.0%
ATGGTTACTTAGCAACATAA+TGG + chr1_2:63460452-63460471 None:intergenic 30.0%
TATGTTGCTAAGTAACCATA+AGG - chr1_2:63460453-63460472 Msa0084160:intron 30.0%
ACTCAATTACTTCCTAAGTA+AGG - chr1_2:63460814-63460833 Msa0084160:intron 30.0%
TTTGGAAATAAGGATAGCAA+AGG + chr1_2:63461137-63461156 None:intergenic 30.0%
!! TTTGAAGGCTTTTGGAAATA+AGG + chr1_2:63461147-63461166 None:intergenic 30.0%
! ACTTTTACTTCCACATTTGA+AGG + chr1_2:63461162-63461181 None:intergenic 30.0%
CTATAAGTATTACTGCCAAA+GGG + chr1_2:63461367-63461386 None:intergenic 30.0%
!! GTAGGAAATTTGATTTGTGT+CGG + chr1_2:63461411-63461430 None:intergenic 30.0%
!!! CTTTTTTGCTAACTTTGTCT+TGG + chr1_2:63461475-63461494 None:intergenic 30.0%
ATCCCAATAAATCAAACATG+AGG - chr1_2:63461941-63461960 Msa0084160:intron 30.0%
! GTCCTCATGTTTGATTTATT+GGG + chr1_2:63461946-63461965 None:intergenic 30.0%
! ATACCACTTGTTGGAAATTT+AGG - chr1_2:63461973-63461992 Msa0084160:intron 30.0%
! ACGACATGTTTGATTTATCA+AGG - chr1_2:63456125-63456144 Msa0084160:CDS 30.0%
! ATCTGAAACAAACATCAACA+CGG - chr1_2:63456233-63456252 Msa0084160:CDS 30.0%
ATCCAATATAAAAGAGGCTA+TGG + chr1_2:63456363-63456382 None:intergenic 30.0%
! ATAGCCTCTTTTATATTGGA+TGG - chr1_2:63456362-63456381 Msa0084160:intron 30.0%
! TTTTATATTGGATGGCCATT+AGG - chr1_2:63456370-63456389 Msa0084160:intron 30.0%
TTTATATTGGATGGCCATTA+GGG - chr1_2:63456371-63456390 Msa0084160:intron 30.0%
TTTCCCATTATTCCGTTAAT+GGG - chr1_2:63456394-63456413 Msa0084160:intron 30.0%
! GATCATAAGGATTGGTATAA+AGG + chr1_2:63462936-63462955 None:intergenic 30.0%
ATATGGTACCTCATAGATTT+GGG + chr1_2:63462958-63462977 None:intergenic 30.0%
AATATGGTACCTCATAGATT+TGG + chr1_2:63462959-63462978 None:intergenic 30.0%
! AAATCTATGAGGTACCATAT+TGG - chr1_2:63462958-63462977 Msa0084160:intron 30.0%
AGAAATTAAAGAGTTGACGT+TGG + chr1_2:63462986-63463005 None:intergenic 30.0%
! CAACTCTTTAATTTCTCTCA+AGG - chr1_2:63462990-63463009 Msa0084160:intron 30.0%
ATGGTAGAAAATTTGCCATT+GGG + chr1_2:63463108-63463127 None:intergenic 30.0%
AATGGTAGAAAATTTGCCAT+TGG + chr1_2:63463109-63463128 None:intergenic 30.0%
CCTAAAACAAGTTCATGAGT+TGG + chr1_2:63455812-63455831 None:intergenic 35.0%
!! CCAACTCATGAACTTGTTTT+AGG - chr1_2:63455809-63455828 Msa0084160:CDS 35.0%
GATGCTCAAACGTTAAACAA+TGG - chr1_2:63455959-63455978 Msa0084160:CDS 35.0%
TGCTCAAACGTTAAACAATG+GGG - chr1_2:63455961-63455980 Msa0084160:CDS 35.0%
! ATTAGGGTATTAGGAATACC+TGG - chr1_2:63456157-63456176 Msa0084160:CDS 35.0%
ACAACAACGATAAAGAGATG+AGG - chr1_2:63456208-63456227 Msa0084160:CDS 35.0%
AGAAGAATGTTTGCCATGTA+CGG - chr1_2:63456326-63456345 Msa0084160:intron 35.0%
TTTGCCATGTACGGTATATT+GGG - chr1_2:63456335-63456354 Msa0084160:intron 35.0%
! GACCATAGCCTCTTTTATAT+TGG - chr1_2:63456358-63456377 Msa0084160:intron 35.0%
ATGGCCATCCAATATAAAAG+AGG + chr1_2:63456369-63456388 None:intergenic 35.0%
GTTTCCCATTATTCCGTTAA+TGG - chr1_2:63456393-63456412 Msa0084160:intron 35.0%
TTAAGATATGTAGCCCAAGT+GGG + chr1_2:63456628-63456647 None:intergenic 35.0%
ATTAAGATATGTAGCCCAAG+TGG + chr1_2:63456629-63456648 None:intergenic 35.0%
CCCATTATTAATGTATGAGG+TGG + chr1_2:63456723-63456742 None:intergenic 35.0%
GGTCCCATTATTAATGTATG+AGG + chr1_2:63456726-63456745 None:intergenic 35.0%
! TGTCATCAAGTGCATTGATA+TGG + chr1_2:63456798-63456817 None:intergenic 35.0%
CATAGATTGATATGGATGAG+TGG - chr1_2:63456816-63456835 Msa0084160:intron 35.0%
! AAGTTTTCAGTTGGATCAGT+TGG + chr1_2:63456885-63456904 None:intergenic 35.0%
!! TAAGGATGTCTTGGATTAGT+GGG + chr1_2:63457073-63457092 None:intergenic 35.0%
! TTAAGGATGTCTTGGATTAG+TGG + chr1_2:63457074-63457093 None:intergenic 35.0%
TGTTGTCATTAAGGATGTCT+TGG + chr1_2:63457082-63457101 None:intergenic 35.0%
CAACCATATGAAAAGACCTT+AGG - chr1_2:63457100-63457119 Msa0084160:intron 35.0%
! ACACCTAAGGTCTTTTCATA+TGG + chr1_2:63457106-63457125 None:intergenic 35.0%
AATCAAAGACATGACACCTA+AGG + chr1_2:63457119-63457138 None:intergenic 35.0%
ATCATTAGTATGTCAGACTC+TGG + chr1_2:63457374-63457393 None:intergenic 35.0%
! TTTTCCTAAGCTTTGCCTAT+AGG + chr1_2:63457565-63457584 None:intergenic 35.0%
AGTCTCAAATATTGCCCATT+AGG + chr1_2:63457615-63457634 None:intergenic 35.0%
AGTTAGTGATGAAAGATCCT+GGG + chr1_2:63457782-63457801 None:intergenic 35.0%
AAGTTAGTGATGAAAGATCC+TGG + chr1_2:63457783-63457802 None:intergenic 35.0%
! ACTTTTGTTAGAGACTTCCT+TGG - chr1_2:63457799-63457818 Msa0084160:intron 35.0%
AATTATGGAGCTGCATAAGA+TGG + chr1_2:63458129-63458148 None:intergenic 35.0%
TCTTGAGGATATTGAGTTTG+GGG + chr1_2:63458404-63458423 None:intergenic 35.0%
! CTATTTGGTGAATCATTGCT+TGG + chr1_2:63458638-63458657 None:intergenic 35.0%
CATATGACCTATTTGAGAGT+TGG - chr1_2:63459248-63459267 Msa0084160:intron 35.0%
GTATACACCAACTCTCAAAT+AGG + chr1_2:63459258-63459277 None:intergenic 35.0%
TGGATCTAGACCTTAGATAA+GGG + chr1_2:63459344-63459363 None:intergenic 35.0%
TTGGATCTAGACCTTAGATA+AGG + chr1_2:63459345-63459364 None:intergenic 35.0%
! TTATCTAAGGTCTAGATCCA+AGG - chr1_2:63459344-63459363 Msa0084160:intron 35.0%
TGCTAAGAATTAACTGCAAG+CGG - chr1_2:63459792-63459811 Msa0084160:intron 35.0%
TTATTTATGCGAGTTGTCGT+CGG + chr1_2:63459975-63459994 None:intergenic 35.0%
GTGAATAATAGGATACCCTA+AGG + chr1_2:63460151-63460170 None:intergenic 35.0%
! AGGGTATCCTATTATTCACA+TGG - chr1_2:63460152-63460171 Msa0084160:intron 35.0%
GAATCAAATCTACACAACAG+AGG - chr1_2:63460304-63460323 Msa0084160:intron 35.0%
! TCAAGTAATTGCGGTTGTTT+TGG + chr1_2:63460355-63460374 None:intergenic 35.0%
AAGCACTACTGACATAATGT+AGG - chr1_2:63460416-63460435 Msa0084160:intron 35.0%
! ATTTGGTAGCACAGAAAGTA+AGG + chr1_2:63460912-63460931 None:intergenic 35.0%
!! TTTGTTGTTCGCTGATCATT+GGG + chr1_2:63461095-63461114 None:intergenic 35.0%
TTTCCAAAAGCCTTCAAATG+TGG - chr1_2:63461149-63461168 Msa0084160:intron 35.0%
CTGTAATGTTCTTGCAACTT+TGG + chr1_2:63461218-63461237 None:intergenic 35.0%
CAAAGTTGCAAGAACATTAC+AGG - chr1_2:63461216-63461235 Msa0084160:intron 35.0%
TCAATAGTAATGGTTCCCTT+TGG - chr1_2:63461349-63461368 Msa0084160:intron 35.0%
GCTATAAGTATTACTGCCAA+AGG + chr1_2:63461368-63461387 None:intergenic 35.0%
GATCAAGTCACACACAAATT+CGG - chr1_2:63461806-63461825 Msa0084160:intron 35.0%
! GGTCCTCATGTTTGATTTAT+TGG + chr1_2:63461947-63461966 None:intergenic 35.0%
AGACCTAAATTTCCAACAAG+TGG + chr1_2:63461979-63461998 None:intergenic 35.0%
! ATTAGGGTATTAGGAATACC+TGG - chr1_2:63456157-63456176 Msa0084160:CDS 35.0%
ACAACAACGATAAAGAGATG+AGG - chr1_2:63456208-63456227 Msa0084160:CDS 35.0%
!! TGATTTGGTTCTTCCTCAAT+CGG - chr1_2:63462236-63462255 Msa0084160:intron 35.0%
AGAAGAATGTTTGCCATGTA+CGG - chr1_2:63456326-63456345 Msa0084160:intron 35.0%
TTTGCCATGTACGGTATATT+GGG - chr1_2:63456335-63456354 Msa0084160:intron 35.0%
! GACCATAGCCTCTTTTATAT+TGG - chr1_2:63456358-63456377 Msa0084160:intron 35.0%
ATGGCCATCCAATATAAAAG+AGG + chr1_2:63456369-63456388 None:intergenic 35.0%
GTTTCCCATTATTCCGTTAA+TGG - chr1_2:63456393-63456412 Msa0084160:intron 35.0%
ATTCCAACAAAAACTCCTTC+AGG - chr1_2:63462661-63462680 Msa0084160:intron 35.0%
AAGAACATCAATCCATCAGT+TGG + chr1_2:63462808-63462827 None:intergenic 35.0%
! AGATTTGGGATCATAAGGAT+TGG + chr1_2:63462944-63462963 None:intergenic 35.0%
! CTCATAGATTTGGGATCATA+AGG + chr1_2:63462949-63462968 None:intergenic 35.0%
CTTATGATCCCAAATCTATG+AGG - chr1_2:63462947-63462966 Msa0084160:intron 35.0%
TTTCTCTCAAGGTCATGAAA+TGG - chr1_2:63463001-63463020 Msa0084160:intron 35.0%
TTCTCTCAAGGTCATGAAAT+GGG - chr1_2:63463002-63463021 Msa0084160:intron 35.0%
ACAACACTCAATGTGTTAGA+GGG + chr1_2:63463075-63463094 None:intergenic 35.0%
AACAACACTCAATGTGTTAG+AGG + chr1_2:63463076-63463095 None:intergenic 35.0%
TGGTAGAAAATTTGCCATTG+GGG + chr1_2:63463107-63463126 None:intergenic 35.0%
CAAATCAACGATTTGAGCAA+TGG + chr1_2:63463127-63463146 None:intergenic 35.0%
! TATGGTTTGTAACTTGTCTG+TGG + chr1_2:63463271-63463290 None:intergenic 35.0%
! GAAGGAAATGTCAGAGCATT+AGG + chr1_2:63455920-63455939 None:intergenic 40.0%
AATGCTCTGACATTTCCTTC+TGG - chr1_2:63455920-63455939 Msa0084160:CDS 40.0%
CTTCTGGTATAACCTTCCAA+GGG - chr1_2:63455936-63455955 Msa0084160:CDS 40.0%
TTCTGGTATAACCTTCCAAG+GGG - chr1_2:63455937-63455956 Msa0084160:CDS 40.0%
ACTAAGCGTGAGAAAACTGT+TGG - chr1_2:63455995-63456014 Msa0084160:CDS 40.0%
AATACCTGGAGATGAAGCTT+TGG - chr1_2:63456171-63456190 Msa0084160:CDS 40.0%
CTTTATCGTTGTTGTCGAGA+GGG + chr1_2:63456203-63456222 None:intergenic 40.0%
TCTTTATCGTTGTTGTCGAG+AGG + chr1_2:63456204-63456223 None:intergenic 40.0%
ACAAACATCAACACGGTTAG+CGG - chr1_2:63456240-63456259 Msa0084160:CDS 40.0%
!! TGATTTGGTTCTTCCTCAAC+CGG - chr1_2:63456267-63456286 Msa0084160:CDS 40.0%
! AACTTGAGGCATAAAGGTAC+CGG + chr1_2:63456289-63456308 None:intergenic 40.0%
GAAGAGAACTTGAGGCATAA+AGG + chr1_2:63456295-63456314 None:intergenic 40.0%
GTTTGCCATGTACGGTATAT+TGG - chr1_2:63456334-63456353 Msa0084160:intron 40.0%
TTGCCATGTACGGTATATTG+GGG - chr1_2:63456336-63456355 Msa0084160:intron 40.0%
! GGAATAATGGGAAACCCTAA+TGG + chr1_2:63456388-63456407 None:intergenic 40.0%
TGGCCCATTAACGGAATAAT+GGG + chr1_2:63456400-63456419 None:intergenic 40.0%
ATGGCCCATTAACGGAATAA+TGG + chr1_2:63456401-63456420 None:intergenic 40.0%
GTTGATATGGACTCAATGAG+TGG + chr1_2:63456432-63456451 None:intergenic 40.0%
TATTCCAACAATCTCCCACT+TGG - chr1_2:63456611-63456630 Msa0084160:intron 40.0%
ATTCCAACAATCTCCCACTT+GGG - chr1_2:63456612-63456631 Msa0084160:intron 40.0%
GTCACTGGCATATAACGTAA+CGG - chr1_2:63456758-63456777 Msa0084160:intron 40.0%
! CATCAAGTGCATTGATATGG+TGG + chr1_2:63456795-63456814 None:intergenic 40.0%
ATTGATATGGATGAGTGGCA+TGG - chr1_2:63456821-63456840 Msa0084160:intron 40.0%
CAGTTGGATCAGTTGGAAAT+AGG + chr1_2:63456878-63456897 None:intergenic 40.0%
CTGCAGAAGTAAAGTTCATG+AGG + chr1_2:63456982-63457001 None:intergenic 40.0%
! GGTGTCATGTCTTTGATTAG+TGG - chr1_2:63457121-63457140 Msa0084160:intron 40.0%
GAATCCTATAGGCAAAGCTT+AGG - chr1_2:63457558-63457577 Msa0084160:intron 40.0%
TGAGACTGAAAAGTCTCTCT+CGG - chr1_2:63457628-63457647 Msa0084160:intron 40.0%
GTTAGTGATGAAAGATCCTG+GGG + chr1_2:63457781-63457800 None:intergenic 40.0%
GTGGATTTAGCAAGTTCAGT+GGG + chr1_2:63457902-63457921 None:intergenic 40.0%
TGTGGATTTAGCAAGTTCAG+TGG + chr1_2:63457903-63457922 None:intergenic 40.0%
! ACTAGAATCCCTAGTTCTTG+AGG - chr1_2:63458211-63458230 Msa0084160:intron 40.0%
! CTAGAATCCCTAGTTCTTGA+GGG - chr1_2:63458212-63458231 Msa0084160:intron 40.0%
CTTGAGGATATTGAGTTTGG+GGG + chr1_2:63458403-63458422 None:intergenic 40.0%
AGAGAAAGACAAGCTCTCAT+TGG + chr1_2:63459124-63459143 None:intergenic 40.0%
AGTTTCACCACCCTTATCTA+AGG - chr1_2:63459331-63459350 Msa0084160:intron 40.0%
ATCTAGACCTTAGATAAGGG+TGG + chr1_2:63459341-63459360 None:intergenic 40.0%
!!! TTGTGTTTTAATGGTGCGCT+TGG + chr1_2:63459763-63459782 None:intergenic 40.0%
TCTAGTAATTGCGGTTGAGA+CGG + chr1_2:63460077-63460096 None:intergenic 40.0%
CTACACAACAGAGGTTACTT+TGG - chr1_2:63460313-63460332 Msa0084160:intron 40.0%
AGGTCATCACACATCATTTG+TGG + chr1_2:63460995-63461014 None:intergenic 40.0%
!! GTTTGTTGTTCGCTGATCAT+TGG + chr1_2:63461096-63461115 None:intergenic 40.0%
! CTTCCACATTTGAAGGCTTT+TGG + chr1_2:63461155-63461174 None:intergenic 40.0%
!!! TCTTTCGTGTGTCGGTTTTT+TGG + chr1_2:63461502-63461521 None:intergenic 40.0%
AAAAACCGACACACGAAAGA+CGG - chr1_2:63461502-63461521 Msa0084160:intron 40.0%
! TTTCGATTTGTGCTGCGTAT+AGG + chr1_2:63461646-63461665 None:intergenic 40.0%
! CTACGGTGTGCTAATTCTTT+TGG + chr1_2:63461832-63461851 None:intergenic 40.0%
!!! TCTTGCGGTTTTGAATGCTA+CGG + chr1_2:63461849-63461868 None:intergenic 40.0%
AATACCTGGAGATGAAGCTT+TGG - chr1_2:63456171-63456190 Msa0084160:CDS 40.0%
CTTTATCGTTGTTGTCGAGA+GGG + chr1_2:63456203-63456222 None:intergenic 40.0%
TCTTTATCGTTGTTGTCGAG+AGG + chr1_2:63456204-63456223 None:intergenic 40.0%
ACAAACATCAACACGGTTAG+CGG - chr1_2:63456240-63456259 Msa0084160:CDS 40.0%
GAAGAGAACTTGAGGCATAA+AGG + chr1_2:63456295-63456314 None:intergenic 40.0%
GTTTGCCATGTACGGTATAT+TGG - chr1_2:63456334-63456353 Msa0084160:intron 40.0%
TTGCCATGTACGGTATATTG+GGG - chr1_2:63456336-63456355 Msa0084160:intron 40.0%
! GGAATAATGGGAAACCCTAA+TGG + chr1_2:63456388-63456407 None:intergenic 40.0%
TGGCCCATTAACGGAATAAT+GGG + chr1_2:63456400-63456419 None:intergenic 40.0%
ATGGCCCATTAACGGAATAA+TGG + chr1_2:63456401-63456420 None:intergenic 40.0%
GTTGATATGGACTCAATGAG+TGG + chr1_2:63456432-63456451 None:intergenic 40.0%
! GTACCTGAAGGAGTTTTTGT+TGG + chr1_2:63462667-63462686 None:intergenic 40.0%
CTTGGTTTAAGTGTACCTGA+AGG + chr1_2:63462679-63462698 None:intergenic 40.0%
GGTACACTTAAACCAAGTAC+AGG - chr1_2:63462682-63462701 Msa0084160:intron 40.0%
GTTAAGATACGACCTGTACT+TGG + chr1_2:63462697-63462716 None:intergenic 40.0%
GGTCTCTACTACGAATGAAA+AGG + chr1_2:63462773-63462792 None:intergenic 40.0%
AAACGTGCACTTTCTGAGTT+GGG + chr1_2:63462859-63462878 None:intergenic 40.0%
AAAACGTGCACTTTCTGAGT+TGG + chr1_2:63462860-63462879 None:intergenic 40.0%
!! AACTCAGAAAGTGCACGTTT+TGG - chr1_2:63462859-63462878 Msa0084160:intron 40.0%
!! AGTTGACGTTGGTTCCAATA+TGG + chr1_2:63462975-63462994 None:intergenic 40.0%
TCAAGGTCATGAAATGGGAA+TGG - chr1_2:63463007-63463026 Msa0084160:intron 40.0%
CAAGGTCATGAAATGGGAAT+GGG - chr1_2:63463008-63463027 Msa0084160:intron 40.0%
GAAAACTGTACTCCCTAACA+CGG - chr1_2:63463146-63463165 Msa0084160:CDS 40.0%
!! AAGTGCTGAATGACCATGAA+TGG + chr1_2:63463221-63463240 None:intergenic 40.0%
! CAGAGCATTAGGAGTGAACT+TGG + chr1_2:63455909-63455928 None:intergenic 45.0%
CCTTGGAAGGTTATACCAGA+AGG + chr1_2:63455938-63455957 None:intergenic 45.0%
CCTTCTGGTATAACCTTCCA+AGG - chr1_2:63455935-63455954 Msa0084160:CDS 45.0%
TTAACGTTTGAGCATCCCCT+TGG + chr1_2:63455955-63455974 None:intergenic 45.0%
TGCCTCAAGTTCTCTTCAGA+TGG - chr1_2:63456298-63456317 Msa0084160:intron 45.0%
GCCTCAAGTTCTCTTCAGAT+GGG - chr1_2:63456299-63456318 Msa0084160:intron 45.0%
CCTCAAGTTCTCTTCAGATG+GGG - chr1_2:63456300-63456319 Msa0084160:intron 45.0%
ATGTCTGGATGGCCCATTAA+CGG + chr1_2:63456409-63456428 None:intergenic 45.0%
TCAATGAGTGGATGTCTGGA+TGG + chr1_2:63456420-63456439 None:intergenic 45.0%
! CATTAATAATGGGACCACCG+CGG - chr1_2:63456730-63456749 Msa0084160:intron 45.0%
! TGCATTGATATGGTGGTCGT+CGG + chr1_2:63456788-63456807 None:intergenic 45.0%
!!! GTATGTCAGACTCTGGCTTT+TGG + chr1_2:63457367-63457386 None:intergenic 45.0%
AAAGTCTCTCTCGGTGATTG+AGG - chr1_2:63457637-63457656 Msa0084160:intron 45.0%
! GGGGACACCTCTTTTGTATT+AGG + chr1_2:63457762-63457781 None:intergenic 45.0%
!! AATACAAAAGAGGTGTCCCC+AGG - chr1_2:63457762-63457781 Msa0084160:intron 45.0%
CTCAACACCCTCAAGAACTA+GGG + chr1_2:63458222-63458241 None:intergenic 45.0%
ACTCAACACCCTCAAGAACT+AGG + chr1_2:63458223-63458242 None:intergenic 45.0%
TTGAGTTTGGGGGAGAGATA+TGG + chr1_2:63458393-63458412 None:intergenic 45.0%
ACAAGCTCTCATTGGAGAGT+GGG + chr1_2:63459116-63459135 None:intergenic 45.0%
! CGATGGTGCACTAGGTATTT+TGG + chr1_2:63459497-63459516 None:intergenic 45.0%
CTTGATATCGATGGTGCACT+AGG + chr1_2:63459505-63459524 None:intergenic 45.0%
GTGCGCTTGGTATCTTGTTA+AGG + chr1_2:63459750-63459769 None:intergenic 45.0%
TCTACGCAACAGAGGTTACT+TGG - chr1_2:63460033-63460052 Msa0084160:intron 45.0%
CTACGCAACAGAGGTTACTT+GGG - chr1_2:63460034-63460053 Msa0084160:intron 45.0%
! TTATTCATGCGGGTTGTCGT+CGG + chr1_2:63460254-63460273 None:intergenic 45.0%
TTCGCTGATCATTGGGTCAT+TGG + chr1_2:63461088-63461107 None:intergenic 45.0%
TGAATCCGTCTTTCGTGTGT+CGG + chr1_2:63461510-63461529 None:intergenic 45.0%
TTGTGCTGCGTATAGGCATA+TGG + chr1_2:63461639-63461658 None:intergenic 45.0%
TCCAACAAGTGGTATCAGAG+CGG + chr1_2:63461968-63461987 None:intergenic 45.0%
!! AGGCATAAAGGTACCGATTG+AGG + chr1_2:63462252-63462271 None:intergenic 45.0%
TGCCTCAAGTTCTCTTCAGA+TGG - chr1_2:63456298-63456317 Msa0084160:intron 45.0%
GCCTCAAGTTCTCTTCAGAT+GGG - chr1_2:63456299-63456318 Msa0084160:intron 45.0%
CCTCAAGTTCTCTTCAGATG+GGG - chr1_2:63456300-63456319 Msa0084160:intron 45.0%
ATGTCTGGATGGCCCATTAA+CGG + chr1_2:63456409-63456428 None:intergenic 45.0%
TCAATGAGTGGATGTCTGGA+TGG + chr1_2:63456420-63456439 None:intergenic 45.0%
GACAAAGCTAGCATCATTGC+CGG + chr1_2:63462746-63462765 None:intergenic 45.0%
TCATTCGTAGTAGAGACCAC+CGG - chr1_2:63462775-63462794 Msa0084160:intron 45.0%
ATGAAATGGGAATGGGTGAC+TGG - chr1_2:63463015-63463034 Msa0084160:intron 45.0%
TGTGTTAGAGGGAGAGTCAT+AGG + chr1_2:63463064-63463083 None:intergenic 45.0%
! GTTGTTGTCACTTACCCCAA+TGG - chr1_2:63463090-63463109 Msa0084160:intron 45.0%
GACCAAACCTAACCGTGTTA+GGG + chr1_2:63463161-63463180 None:intergenic 45.0%
AGACCAAACCTAACCGTGTT+AGG + chr1_2:63463162-63463181 None:intergenic 45.0%
! ACGGTTAGGTTTGGTCTATC+TGG - chr1_2:63463165-63463184 Msa0084160:CDS 45.0%
CTATCTGGTGCTTCAGTAAC+TGG - chr1_2:63463180-63463199 Msa0084160:CDS 45.0%
!! TATTATTATTATAGTATATT+TGG + chr1_2:63458311-63458330 None:intergenic 5.0%
! ACCTGGAGATGAAGCTTTGG+TGG - chr1_2:63456174-63456193 Msa0084160:CDS 50.0%
AACATCAACACGGTTAGCGG+CGG - chr1_2:63456243-63456262 Msa0084160:CDS 50.0%
!! AGGCATAAAGGTACCGGTTG+AGG + chr1_2:63456283-63456302 None:intergenic 50.0%
CCCCATCTGAAGAGAACTTG+AGG + chr1_2:63456303-63456322 None:intergenic 50.0%
GGTCCCCAATATACCGTACA+TGG + chr1_2:63456342-63456361 None:intergenic 50.0%
GGACTCAATGAGTGGATGTC+TGG + chr1_2:63456424-63456443 None:intergenic 50.0%
TAGCCCAAGTGGGAGATTGT+TGG + chr1_2:63456618-63456637 None:intergenic 50.0%
CATTGATATGGTGGTCGTCG+GGG + chr1_2:63456786-63456805 None:intergenic 50.0%
! GCATTGATATGGTGGTCGTC+GGG + chr1_2:63456787-63456806 None:intergenic 50.0%
GACAAGCTCTCATTGGAGAG+TGG + chr1_2:63459117-63459136 None:intergenic 50.0%
GTGGATAATAGGACGCCCAA+AGG + chr1_2:63459872-63459891 None:intergenic 50.0%
TGGGCGTCCTATTATCCACA+TGG - chr1_2:63459873-63459892 Msa0084160:intron 50.0%
GAGTCGAATCTACGCAACAG+AGG - chr1_2:63460025-63460044 Msa0084160:intron 50.0%
! TAAGGAAGGCACAACTTGGC+CGG + chr1_2:63460228-63460247 None:intergenic 50.0%
GCCAAGTTGTGCCTTCCTTA+GGG - chr1_2:63460228-63460247 Msa0084160:intron 50.0%
AGGGTTGTCGAGTGACCTTA+TGG + chr1_2:63460471-63460490 None:intergenic 50.0%
ACCGCTCTGATACCACTTGT+TGG - chr1_2:63461964-63461983 Msa0084160:intron 50.0%
! ACCTGGAGATGAAGCTTTGG+TGG - chr1_2:63456174-63456193 Msa0084160:CDS 50.0%
AACATCAACACGGTTAGCGG+CGG - chr1_2:63456243-63456262 Msa0084160:CDS 50.0%
CCCCATCTGAAGAGAACTTG+AGG + chr1_2:63456303-63456322 None:intergenic 50.0%
GGTCCCCAATATACCGTACA+TGG + chr1_2:63456342-63456361 None:intergenic 50.0%
GGACTCAATGAGTGGATGTC+TGG + chr1_2:63456424-63456443 None:intergenic 50.0%
! TCCATCAGTTGGAGCGTTTC+CGG + chr1_2:63462797-63462816 None:intergenic 50.0%
GGTGGAATCACAGTGTCTTG+TGG + chr1_2:63462838-63462857 None:intergenic 50.0%
CTGTACTCCCTAACACGGTT+AGG - chr1_2:63463151-63463170 Msa0084160:CDS 50.0%
CTCCCTAACACGGTTAGGTT+TGG - chr1_2:63463156-63463175 Msa0084160:CDS 50.0%
CAGCACACGACATCCATTCA+TGG - chr1_2:63463205-63463224 Msa0084160:CDS 50.0%
CGTTTGAGCATCCCCTTGGA+AGG + chr1_2:63455951-63455970 None:intergenic 55.0%
GCCACCAAAGCTTCATCTCC+AGG + chr1_2:63456178-63456197 None:intergenic 55.0%
GGCCAAGTTGTGCCTTCCTT+GGG - chr1_2:63459948-63459967 Msa0084160:intron 55.0%
GCCAAGTTGTGCCTTCCTTG+GGG - chr1_2:63459949-63459968 Msa0084160:intron 55.0%
GGCCAAGTTGTGCCTTCCTT+AGG - chr1_2:63459948-63459967 Msa0084160:intron 55.0%
! GCCCTAAGGAAGGCACAACT+TGG + chr1_2:63460232-63460251 None:intergenic 55.0%
GCCACCAAAGCTTCATCTCC+AGG + chr1_2:63456178-63456197 None:intergenic 55.0%
ATTGCCGGCAGTGTCCCAAA+GGG + chr1_2:63462731-63462750 None:intergenic 55.0%
! ATCAGTTGGAGCGTTTCCGG+TGG + chr1_2:63462794-63462813 None:intergenic 55.0%
ACCGGAAACGCTCCAACTGA+TGG - chr1_2:63462793-63462812 Msa0084160:intron 55.0%
! CGTGCACTTTCTGAGTTGGG+TGG + chr1_2:63462856-63462875 None:intergenic 55.0%
ACGGTTAGCGGCGGCTGATT+TGG - chr1_2:63456252-63456271 Msa0084160:CDS 60.0%
TATGCCAGTGACGACAGCCG+CGG + chr1_2:63456750-63456769 None:intergenic 60.0%
CGGCCAAGTTGTGCCTTCCT+TGG - chr1_2:63459947-63459966 Msa0084160:intron 60.0%
! GCCCCAAGGAAGGCACAACT+TGG + chr1_2:63459953-63459972 None:intergenic 60.0%
GTTGTCGTCGGCCCTAAGGA+AGG + chr1_2:63460242-63460261 None:intergenic 60.0%
ACGGTTAGCGGCGGCTGATT+TGG - chr1_2:63456252-63456271 Msa0084160:CDS 60.0%
TAACCCCACCCGTGTCCCTT+TGG - chr1_2:63462713-63462732 Msa0084160:intron 60.0%
AACCCCACCCGTGTCCCTTT+GGG - chr1_2:63462714-63462733 Msa0084160:intron 60.0%
TGTCCCAAAGGGACACGGGT+GGG + chr1_2:63462720-63462739 None:intergenic 60.0%
GCAGTGTCCCAAAGGGACAC+GGG + chr1_2:63462724-63462743 None:intergenic 60.0%
GGCAGTGTCCCAAAGGGACA+CGG + chr1_2:63462725-63462744 None:intergenic 60.0%
!! GTGTCCCTTTGGGACACTGC+CGG - chr1_2:63462724-63462743 Msa0084160:intron 60.0%
CATTGCCGGCAGTGTCCCAA+AGG + chr1_2:63462732-63462751 None:intergenic 60.0%
GTTGTCGTCGGCCCCAAGGA+AGG + chr1_2:63459963-63459982 None:intergenic 65.0%
GTCCCAAAGGGACACGGGTG+GGG + chr1_2:63462719-63462738 None:intergenic 65.0%
GTGTCCCAAAGGGACACGGG+TGG + chr1_2:63462721-63462740 None:intergenic 65.0%
ACCACCGCGGCTGTCGTCAC+TGG - chr1_2:63456743-63456762 Msa0084160:intron 70.0%
GCGAGTTGTCGTCGGCCCCA+AGG + chr1_2:63459967-63459986 None:intergenic 70.0%
! GCGGGTTGTCGTCGGCCCTA+AGG + chr1_2:63460246-63460265 None:intergenic 70.0%
GCCAGTGACGACAGCCGCGG+TGG + chr1_2:63456747-63456766 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 63455785 63463293 63455785 ID=Msa0084160;Name=Msa0084160
chr1_2 mRNA 63455785 63463293 63455785 ID=Msa0084160-mRNA-1;Parent=Msa0084160;Name=Msa0084160-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|0|0|2|0|220
chr1_2 exon 63463137 63463293 63463137 ID=Msa0084160-mRNA-1:exon:21247;Parent=Msa0084160-mRNA-1
chr1_2 exon 63455785 63456290 63455785 ID=Msa0084160-mRNA-1:exon:21246;Parent=Msa0084160-mRNA-1
chr1_2 CDS 63463137 63463293 63463137 ID=Msa0084160-mRNA-1:cds;Parent=Msa0084160-mRNA-1
chr1_2 CDS 63455785 63456290 63455785 ID=Msa0084160-mRNA-1:cds;Parent=Msa0084160-mRNA-1
Gene Sequence

>Msa0084160

ATGGCTTTTTATCGCACAAATCTTCCAACTCATGAACTTGTTTTAGGCATGATATACACAACTTTCTTTCTCTTGCTAGCTACAAATATAAACTCAGTACAAGCCCATTCTTTCAATTTCACCAAGTTCACTCCTAATGCTCTGACATTTCCTTCTGAGACCACCGGAAACGCTCCAACTGATGGATTGATGTTCTTTATTGCACCACAAGACACTGTGATTCCACCCAACTCAGAAAGTGCACGTTTTGGAGTAGTTGATTCAAAAAATGCTTACAATCAATTTGTTGGTGTAGAGTTTGACCTTTATACCAATCCTTATGATCCCAAATCTATGAGGTACCATATTGGAACCAACGTCAACTCTTTAATTTCTCTCAAGGTCATGAAATGGGAATGGGTGACTGGATCATTGAATGAAGTAAGTATAGCCTATGACTCTCCCTCTAACACATTGAGTGTTGTTGTCACTTACCCCAATGGCAAATTTTCTACCATTGCTCAAATCGTTGATTTGAAAACTGTACTCCCTAACACGGTTAGGTTTGGTCTATCTGGTGCTTCAGTAACTGGTACAGCACACGACATCCATTCATGGTCATTCAGCACTTCAAACTTGAAAACAACTATAAGCAGCGCCACAGACAAGTTACAAACCATATAA

Protein sequence

>Msa0084160

MAFYRTNLPTHELVLGMIYTTFFLLLATNINSVQAHSFNFTKFTPNALTFPSETTGNAPTDGLMFFIAPQDTVIPPNSESARFGVVDSKNAYNQFVGVEFDLYTNPYDPKSMRYHIGTNVNSLISLKVMKWEWVTGSLNEVSIAYDSPSNTLSVVVTYPNGKFSTIAQIVDLKTVLPNTVRFGLSGASVTGTAHDIHSWSFSTSNLKTTISSATDKLQTI*