Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262360 | XP_013465154.1 | 100.000 | 78 | 0 | 0 | 1 | 78 | 1 | 78 | 1.53e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262360 | sp|Q1G309|TAX2_ARATH | 73.239 | 71 | 19 | 0 | 8 | 78 | 3 | 73 | 1.58e-24 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262360 | I3SIC3 | 100.000 | 78 | 0 | 0 | 1 | 78 | 1 | 78 | 7.33e-46 | 150 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076640 | Msa0262360 | 0.820683 | 6.024657e-53 | -8.615850e-47 |
| Msa0147790 | Msa0262360 | 0.837246 | 5.819298e-57 | -8.615850e-47 |
| Msa0173120 | Msa0262360 | 0.804879 | 1.747512e-49 | -8.615850e-47 |
| Msa0186030 | Msa0262360 | 0.812927 | 3.314361e-51 | -8.615850e-47 |
| Msa0224210 | Msa0262360 | 0.803981 | 2.688662e-49 | -8.615850e-47 |
| Msa0225200 | Msa0262360 | 0.934659 | 2.864647e-96 | -8.615850e-47 |
| Msa0235840 | Msa0262360 | 0.826862 | 2.148859e-54 | -8.615850e-47 |
| Msa0262360 | Msa0267900 | 0.804788 | 1.825624e-49 | -8.615850e-47 |
| Msa0262360 | Msa0300140 | 0.995264 | 1.449478e-214 | -8.615850e-47 |
| Msa0262360 | Msa0332360 | 0.818507 | 1.890592e-52 | -8.615850e-47 |
| Msa0262360 | Msa0337600 | 0.825706 | 4.049822e-54 | -8.615850e-47 |
| Msa0262360 | Msa0385320 | 0.805856 | 1.090509e-49 | -8.615850e-47 |
| Msa0262360 | Msa0390790 | 0.806576 | 7.693653e-50 | -8.615850e-47 |
| Msa0262360 | Msa0402800 | 0.822739 | 2.016476e-53 | -8.615850e-47 |
| Msa0262360 | Msa0480530 | 0.808929 | 2.432333e-50 | -8.615850e-47 |
| Msa0262360 | Msa0481740 | 0.818702 | 1.708136e-52 | -8.615850e-47 |
| Msa0262360 | Msa0481770 | 0.826393 | 2.780615e-54 | -8.615850e-47 |
| Msa0262360 | Msa0483000 | 0.804412 | 2.187299e-49 | -8.615850e-47 |
| Msa0262360 | Msa0497860 | 0.811805 | 5.827077e-51 | -8.615850e-47 |
| Msa0262360 | Msa0614290 | 0.808651 | 2.789260e-50 | -8.615850e-47 |
| Msa0262360 | Msa0638810 | 0.803775 | 2.967314e-49 | -8.615850e-47 |
| Msa0262360 | Msa0697510 | 0.807966 | 3.904230e-50 | -8.615850e-47 |
| Msa0262360 | Msa0697520 | 0.803921 | 2.767737e-49 | -8.615850e-47 |
| Msa0262360 | Msa0744540 | 0.805742 | 1.152441e-49 | -8.615850e-47 |
| Msa0262360 | Msa0744560 | 0.801285 | 9.678043e-49 | -8.615850e-47 |
| Msa0262360 | Msa0816630 | 0.861657 | 8.794684e-64 | -8.615850e-47 |
| Msa0262360 | Msa0826360 | 0.807541 | 4.805540e-50 | -8.615850e-47 |
| Msa0262360 | Msa0826370 | 0.804461 | 2.136045e-49 | -8.615850e-47 |
| Msa0262360 | Msa0826380 | 0.827216 | 1.768732e-54 | -8.615850e-47 |
| Msa0262360 | Msa0826450 | 0.826662 | 2.399029e-54 | -8.615850e-47 |
| Msa0262360 | Msa0863940 | 0.842983 | 1.853068e-58 | -8.615850e-47 |
| Msa0262360 | Msa0865810 | 0.810752 | 9.858124e-51 | -8.615850e-47 |
| Msa0262360 | Msa0881510 | 0.800077 | 1.706814e-48 | -8.615850e-47 |
| Msa0262360 | Msa1064510 | 0.802289 | 6.019751e-49 | -8.615850e-47 |
| Msa0262360 | Msa1080650 | 0.827591 | 1.437531e-54 | -8.615850e-47 |
| Msa0262360 | Msa1087630 | 0.800315 | 1.526762e-48 | -8.615850e-47 |
| Msa0262360 | Msa1126440 | 0.822688 | 2.072043e-53 | -8.615850e-47 |
| Msa0262360 | Msa1157200 | 0.821038 | 4.992985e-53 | -8.615850e-47 |
| Msa0262360 | Msa1183750 | 0.823014 | 1.739325e-53 | -8.615850e-47 |
| Msa0262360 | Msa1212470 | 0.804064 | 2.584434e-49 | -8.615850e-47 |
| Msa0262360 | Msa1309050 | 0.812551 | 4.005118e-51 | -8.615850e-47 |
| Msa0262360 | Msa1344330 | 0.835983 | 1.221059e-56 | -8.615850e-47 |
| Msa0262360 | Msa1349830 | 0.807389 | 5.177469e-50 | -8.615850e-47 |
| Msa0262360 | Msa1401110 | 0.839865 | 1.227018e-57 | -8.615850e-47 |
| Msa0262360 | Msa1453600 | 0.828428 | 9.042309e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262360 | MtrunA17_Chr2g0324911 | 100.000 | 78 | 0 | 0 | 1 | 78 | 1 | 78 | 1.41e-49 | 150 |
| Msa0262360 | MtrunA17_Chr2g0283451 | 60.811 | 74 | 29 | 0 | 5 | 78 | 7 | 80 | 6.04e-28 | 95.9 |
| Msa0262360 | MtrunA17_Chr4g0040991 | 58.974 | 78 | 31 | 1 | 1 | 78 | 1 | 77 | 5.56e-27 | 93.6 |
| Msa0262360 | MtrunA17_Chr2g0325441 | 53.846 | 78 | 35 | 1 | 1 | 78 | 1 | 77 | 1.35e-25 | 90.1 |
| Msa0262360 | MtrunA17_Chr4g0040491 | 72.727 | 77 | 21 | 0 | 2 | 78 | 3 | 79 | 4.26e-23 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262360 | AT2G20562.1 | 73.239 | 71 | 19 | 0 | 8 | 78 | 3 | 73 | 1.60e-25 | 90.1 |
| Msa0262360 | AT2G31090.1 | 59.155 | 71 | 29 | 0 | 8 | 78 | 5 | 75 | 5.04e-21 | 79.0 |
Find 33 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCGCTGGATTGGCAAATT+TGG | 0.128393 | 2_2:+61229673 | Msa0262360:CDS |
| CTCTTGTTGGTGCAGTTATC+TGG | 0.152454 | 2_2:+61229290 | Msa0262360:CDS |
| TCTCCACTTCCCCTCGTTCT+TGG | 0.245405 | 2_2:+61229124 | Msa0262360:five_prime_UTR |
| CGAGGGGAAGTGGAGAAGTT+AGG | 0.288412 | 2_2:-61229117 | None:intergenic |
| AGAAAGAAAGAAAGAAAATA+TGG | 0.303892 | 2_2:+61229189 | Msa0262360:exon |
| GAGGGGAAGTGGAGAAGTTA+GGG | 0.336170 | 2_2:-61229116 | None:intergenic |
| TTTCTTTCTATATTCTTCAA+TGG | 0.404934 | 2_2:-61229163 | None:intergenic |
| CAAATTCAAAGAAAACAAAA+AGG | 0.405497 | 2_2:-61229815 | None:intergenic |
| CCATGTTGCATTTGCTGCGC+TGG | 0.414638 | 2_2:+61229659 | Msa0262360:CDS |
| TTGCATTTGCTGCGCTGGAT+TGG | 0.438326 | 2_2:+61229664 | Msa0262360:CDS |
| ATCAAAGCCAAGAGAGCAAA+AGG | 0.457758 | 2_2:-61229262 | None:intergenic |
| GTAAATATCGTAAACTATGA+AGG | 0.463185 | 2_2:-61229772 | None:intergenic |
| TTCCAGTTCGTGTTCTTAAG+TGG | 0.471610 | 2_2:+61229714 | Msa0262360:CDS |
| AACCACTTAAGAACACGAAC+TGG | 0.473947 | 2_2:-61229716 | None:intergenic |
| TGGATTGGCAAATTTGGCTG+TGG | 0.481790 | 2_2:+61229679 | Msa0262360:CDS |
| GGTTGTGAATGCAGGCCATT+GGG | 0.491219 | 2_2:+61229223 | Msa0262360:CDS |
| TGACCAAGAACGAGGGGAAG+TGG | 0.494668 | 2_2:-61229127 | None:intergenic |
| GAAAATATGGCAGATGATGA+AGG | 0.507098 | 2_2:+61229202 | Msa0262360:exon |
| TAAATATCGTAAACTATGAA+GGG | 0.517114 | 2_2:-61229771 | None:intergenic |
| ATGATGAAGGTTGTGAATGC+AGG | 0.535019 | 2_2:+61229215 | Msa0262360:CDS |
| AATCAAAATATATAGACAAA+CGG | 0.544954 | 2_2:-61229880 | None:intergenic |
| GGATTGGCAAATTTGGCTGT+GGG | 0.548115 | 2_2:+61229680 | Msa0262360:CDS |
| CCAGCGCAGCAAATGCAACA+TGG | 0.552638 | 2_2:-61229659 | None:intergenic |
| TTATTTGTATCATGATTCAT+CGG | 0.553612 | 2_2:+61229839 | Msa0262360:three_prime_UTR |
| AGGTTGTGAATGCAGGCCAT+TGG | 0.583286 | 2_2:+61229222 | Msa0262360:CDS |
| CAGCGCAGCAAATGCAACAT+GGG | 0.600667 | 2_2:-61229658 | None:intergenic |
| AGGGGAAGTGGAGAAGTTAG+GGG | 0.612620 | 2_2:-61229115 | None:intergenic |
| AGGGGTCTTCATCTCTAACA+AGG | 0.633868 | 2_2:-61229752 | None:intergenic |
| AAATATCGTAAACTATGAAG+GGG | 0.645560 | 2_2:-61229770 | None:intergenic |
| GGGGAAGTGGAGAAGTTAGG+GGG | 0.647330 | 2_2:-61229114 | None:intergenic |
| TGTGAACGTGACCAAGAACG+AGG | 0.653521 | 2_2:-61229135 | None:intergenic |
| GTGAACGTGACCAAGAACGA+GGG | 0.665471 | 2_2:-61229134 | None:intergenic |
| TGAACGTGACCAAGAACGAG+GGG | 0.695224 | 2_2:-61229133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTTATTATTTTT+TGG | + | chr2_2:61229571-61229590 | Msa0262360:intron | 0.0% |
| !!! | TATTTTATTTTATTATTTTT+TGG | + | chr2_2:61229571-61229590 | Msa0262360:intron | 0.0% |
| !!! | TTTATTATTTTTTGGTTTTT+TGG | + | chr2_2:61229579-61229598 | Msa0262360:intron | 10.0% |
| !!! | TTTATTATTTTTTGGTTTTT+TGG | + | chr2_2:61229579-61229598 | Msa0262360:intron | 10.0% |
| !! | ATATGATTTCATAAAATAAC+AGG | - | chr2_2:61229394-61229413 | None:intergenic | 15.0% |
| !! | AATCAAAATATATAGACAAA+CGG | - | chr2_2:61229883-61229902 | None:intergenic | 15.0% |
| !! | ATATGATTTCATAAAATAAC+AGG | - | chr2_2:61229394-61229413 | None:intergenic | 15.0% |
| !! | AATCAAAATATATAGACAAA+CGG | - | chr2_2:61229883-61229902 | None:intergenic | 15.0% |
| !! | TTTCTTTCTATATTCTTCAA+TGG | - | chr2_2:61229166-61229185 | None:intergenic | 20.0% |
| !! | AGAAAGAAAGAAAGAAAATA+TGG | + | chr2_2:61229189-61229208 | Msa0262360:exon | 20.0% |
| !! | AAAGATAAAACTTGATATCT+AGG | + | chr2_2:61229461-61229480 | Msa0262360:intron | 20.0% |
| !! | AAGATAAAACTTGATATCTA+GGG | + | chr2_2:61229462-61229481 | Msa0262360:intron | 20.0% |
| !! | TAAATATCGTAAACTATGAA+GGG | - | chr2_2:61229774-61229793 | None:intergenic | 20.0% |
| !! | CAAATTCAAAGAAAACAAAA+AGG | - | chr2_2:61229818-61229837 | None:intergenic | 20.0% |
| !! | TTATTTGTATCATGATTCAT+CGG | + | chr2_2:61229839-61229858 | Msa0262360:three_prime_UTR | 20.0% |
| !! | TTTCTTTCTATATTCTTCAA+TGG | - | chr2_2:61229166-61229185 | None:intergenic | 20.0% |
| !! | AGAAAGAAAGAAAGAAAATA+TGG | + | chr2_2:61229189-61229208 | Msa0262360:exon | 20.0% |
| !! | AAAGATAAAACTTGATATCT+AGG | + | chr2_2:61229461-61229480 | Msa0262360:intron | 20.0% |
| !! | AAGATAAAACTTGATATCTA+GGG | + | chr2_2:61229462-61229481 | Msa0262360:intron | 20.0% |
| !! | TAAATATCGTAAACTATGAA+GGG | - | chr2_2:61229774-61229793 | None:intergenic | 20.0% |
| !! | CAAATTCAAAGAAAACAAAA+AGG | - | chr2_2:61229818-61229837 | None:intergenic | 20.0% |
| !! | TTATTTGTATCATGATTCAT+CGG | + | chr2_2:61229839-61229858 | Msa0262360:three_prime_UTR | 20.0% |
| ! | AAATATCGTAAACTATGAAG+GGG | - | chr2_2:61229773-61229792 | None:intergenic | 25.0% |
| ! | GTAAATATCGTAAACTATGA+AGG | - | chr2_2:61229775-61229794 | None:intergenic | 25.0% |
| ! | AAATATCGTAAACTATGAAG+GGG | - | chr2_2:61229773-61229792 | None:intergenic | 25.0% |
| ! | GTAAATATCGTAAACTATGA+AGG | - | chr2_2:61229775-61229794 | None:intergenic | 25.0% |
| !! | GCTTTGATTTTATCTCTTGT+TGG | + | chr2_2:61229277-61229296 | Msa0262360:CDS | 30.0% |
| !! | GCTTTGATTTTATCTCTTGT+TGG | + | chr2_2:61229277-61229296 | Msa0262360:CDS | 30.0% |
| GAAAATATGGCAGATGATGA+AGG | + | chr2_2:61229202-61229221 | Msa0262360:exon | 35.0% | |
| AATCCAAGCAAAAAACCCAA+TGG | - | chr2_2:61229241-61229260 | None:intergenic | 35.0% | |
| ! | GTGCAGTTATCTGGATTTTT+GGG | + | chr2_2:61229299-61229318 | Msa0262360:CDS | 35.0% |
| GAAAATATGGCAGATGATGA+AGG | + | chr2_2:61229202-61229221 | Msa0262360:exon | 35.0% | |
| AATCCAAGCAAAAAACCCAA+TGG | - | chr2_2:61229241-61229260 | None:intergenic | 35.0% | |
| ! | GTGCAGTTATCTGGATTTTT+GGG | + | chr2_2:61229299-61229318 | Msa0262360:CDS | 35.0% |
| ATGATGAAGGTTGTGAATGC+AGG | + | chr2_2:61229215-61229234 | Msa0262360:CDS | 40.0% | |
| ! | TGGATTACCTTTTGCTCTCT+TGG | + | chr2_2:61229255-61229274 | Msa0262360:CDS | 40.0% |
| ATCAAAGCCAAGAGAGCAAA+AGG | - | chr2_2:61229265-61229284 | None:intergenic | 40.0% | |
| ! | GGTGCAGTTATCTGGATTTT+TGG | + | chr2_2:61229298-61229317 | Msa0262360:CDS | 40.0% |
| TTCCAGTTCGTGTTCTTAAG+TGG | + | chr2_2:61229714-61229733 | Msa0262360:CDS | 40.0% | |
| AACCACTTAAGAACACGAAC+TGG | - | chr2_2:61229719-61229738 | None:intergenic | 40.0% | |
| ATGATGAAGGTTGTGAATGC+AGG | + | chr2_2:61229215-61229234 | Msa0262360:CDS | 40.0% | |
| ! | TGGATTACCTTTTGCTCTCT+TGG | + | chr2_2:61229255-61229274 | Msa0262360:CDS | 40.0% |
| ATCAAAGCCAAGAGAGCAAA+AGG | - | chr2_2:61229265-61229284 | None:intergenic | 40.0% | |
| ! | GGTGCAGTTATCTGGATTTT+TGG | + | chr2_2:61229298-61229317 | Msa0262360:CDS | 40.0% |
| TTCCAGTTCGTGTTCTTAAG+TGG | + | chr2_2:61229714-61229733 | Msa0262360:CDS | 40.0% | |
| AACCACTTAAGAACACGAAC+TGG | - | chr2_2:61229719-61229738 | None:intergenic | 40.0% | |
| !!! | AGGCCATTGGGTTTTTTGCT+TGG | + | chr2_2:61229235-61229254 | Msa0262360:CDS | 45.0% |
| CTCTTGTTGGTGCAGTTATC+TGG | + | chr2_2:61229290-61229309 | Msa0262360:CDS | 45.0% | |
| TGCGCATCAACTACTTTCAC+CGG | + | chr2_2:61229505-61229524 | Msa0262360:intron | 45.0% | |
| !! | TGGATTGGCAAATTTGGCTG+TGG | + | chr2_2:61229679-61229698 | Msa0262360:CDS | 45.0% |
| ! | GGATTGGCAAATTTGGCTGT+GGG | + | chr2_2:61229680-61229699 | Msa0262360:CDS | 45.0% |
| AGGGGTCTTCATCTCTAACA+AGG | - | chr2_2:61229755-61229774 | None:intergenic | 45.0% | |
| !!! | AGGCCATTGGGTTTTTTGCT+TGG | + | chr2_2:61229235-61229254 | Msa0262360:CDS | 45.0% |
| CTCTTGTTGGTGCAGTTATC+TGG | + | chr2_2:61229290-61229309 | Msa0262360:CDS | 45.0% | |
| TGCGCATCAACTACTTTCAC+CGG | + | chr2_2:61229505-61229524 | Msa0262360:intron | 45.0% | |
| !! | TGGATTGGCAAATTTGGCTG+TGG | + | chr2_2:61229679-61229698 | Msa0262360:CDS | 45.0% |
| ! | GGATTGGCAAATTTGGCTGT+GGG | + | chr2_2:61229680-61229699 | Msa0262360:CDS | 45.0% |
| AGGGGTCTTCATCTCTAACA+AGG | - | chr2_2:61229755-61229774 | None:intergenic | 45.0% | |
| AGGGGAAGTGGAGAAGTTAG+GGG | - | chr2_2:61229118-61229137 | None:intergenic | 50.0% | |
| GAGGGGAAGTGGAGAAGTTA+GGG | - | chr2_2:61229119-61229138 | None:intergenic | 50.0% | |
| TGAACGTGACCAAGAACGAG+GGG | - | chr2_2:61229136-61229155 | None:intergenic | 50.0% | |
| GTGAACGTGACCAAGAACGA+GGG | - | chr2_2:61229137-61229156 | None:intergenic | 50.0% | |
| TGTGAACGTGACCAAGAACG+AGG | - | chr2_2:61229138-61229157 | None:intergenic | 50.0% | |
| AGGTTGTGAATGCAGGCCAT+TGG | + | chr2_2:61229222-61229241 | Msa0262360:CDS | 50.0% | |
| GGTTGTGAATGCAGGCCATT+GGG | + | chr2_2:61229223-61229242 | Msa0262360:CDS | 50.0% | |
| CAGCGCAGCAAATGCAACAT+GGG | - | chr2_2:61229661-61229680 | None:intergenic | 50.0% | |
| ! | TTGCATTTGCTGCGCTGGAT+TGG | + | chr2_2:61229664-61229683 | Msa0262360:CDS | 50.0% |
| !! | CTGCGCTGGATTGGCAAATT+TGG | + | chr2_2:61229673-61229692 | Msa0262360:CDS | 50.0% |
| AGGGGAAGTGGAGAAGTTAG+GGG | - | chr2_2:61229118-61229137 | None:intergenic | 50.0% | |
| GAGGGGAAGTGGAGAAGTTA+GGG | - | chr2_2:61229119-61229138 | None:intergenic | 50.0% | |
| TGAACGTGACCAAGAACGAG+GGG | - | chr2_2:61229136-61229155 | None:intergenic | 50.0% | |
| GTGAACGTGACCAAGAACGA+GGG | - | chr2_2:61229137-61229156 | None:intergenic | 50.0% | |
| TGTGAACGTGACCAAGAACG+AGG | - | chr2_2:61229138-61229157 | None:intergenic | 50.0% | |
| AGGTTGTGAATGCAGGCCAT+TGG | + | chr2_2:61229222-61229241 | Msa0262360:CDS | 50.0% | |
| GGTTGTGAATGCAGGCCATT+GGG | + | chr2_2:61229223-61229242 | Msa0262360:CDS | 50.0% | |
| CAGCGCAGCAAATGCAACAT+GGG | - | chr2_2:61229661-61229680 | None:intergenic | 50.0% | |
| ! | TTGCATTTGCTGCGCTGGAT+TGG | + | chr2_2:61229664-61229683 | Msa0262360:CDS | 50.0% |
| !! | CTGCGCTGGATTGGCAAATT+TGG | + | chr2_2:61229673-61229692 | Msa0262360:CDS | 50.0% |
| GGGGAAGTGGAGAAGTTAGG+GGG | - | chr2_2:61229117-61229136 | None:intergenic | 55.0% | |
| CGAGGGGAAGTGGAGAAGTT+AGG | - | chr2_2:61229120-61229139 | None:intergenic | 55.0% | |
| TCTCCACTTCCCCTCGTTCT+TGG | + | chr2_2:61229124-61229143 | Msa0262360:five_prime_UTR | 55.0% | |
| TGACCAAGAACGAGGGGAAG+TGG | - | chr2_2:61229130-61229149 | None:intergenic | 55.0% | |
| ACTACTTTCACCGGACGCAG+CGG | + | chr2_2:61229514-61229533 | Msa0262360:intron | 55.0% | |
| CCAGCGCAGCAAATGCAACA+TGG | - | chr2_2:61229662-61229681 | None:intergenic | 55.0% | |
| ! | CCATGTTGCATTTGCTGCGC+TGG | + | chr2_2:61229659-61229678 | Msa0262360:CDS | 55.0% |
| GGGGAAGTGGAGAAGTTAGG+GGG | - | chr2_2:61229117-61229136 | None:intergenic | 55.0% | |
| CGAGGGGAAGTGGAGAAGTT+AGG | - | chr2_2:61229120-61229139 | None:intergenic | 55.0% | |
| TCTCCACTTCCCCTCGTTCT+TGG | + | chr2_2:61229124-61229143 | Msa0262360:five_prime_UTR | 55.0% | |
| TGACCAAGAACGAGGGGAAG+TGG | - | chr2_2:61229130-61229149 | None:intergenic | 55.0% | |
| ACTACTTTCACCGGACGCAG+CGG | + | chr2_2:61229514-61229533 | Msa0262360:intron | 55.0% | |
| CCAGCGCAGCAAATGCAACA+TGG | - | chr2_2:61229662-61229681 | None:intergenic | 55.0% | |
| ! | CCATGTTGCATTTGCTGCGC+TGG | + | chr2_2:61229659-61229678 | Msa0262360:CDS | 55.0% |
| ! | TGACTAAGCACCGCTGCGTC+CGG | - | chr2_2:61229527-61229546 | None:intergenic | 60.0% |
| ! | TGACTAAGCACCGCTGCGTC+CGG | - | chr2_2:61229527-61229546 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 61229052 | 61229906 | 61229052 | ID=Msa0262360;Name=Msa0262360 |
| chr2_2 | mRNA | 61229052 | 61229906 | 61229052 | ID=Msa0262360-mRNA-1;Parent=Msa0262360;Name=Msa0262360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=156|1|1|1|1|1|2|146|78 |
| chr2_2 | exon | 61229052 | 61229320 | 61229052 | ID=Msa0262360-mRNA-1:exon:18855;Parent=Msa0262360-mRNA-1 |
| chr2_2 | exon | 61229637 | 61229906 | 61229637 | ID=Msa0262360-mRNA-1:exon:18856;Parent=Msa0262360-mRNA-1 |
| chr2_2 | five_prime_UTR | 61229052 | 61229207 | 61229052 | ID=Msa0262360-mRNA-1:five_prime_utr;Parent=Msa0262360-mRNA-1 |
| chr2_2 | CDS | 61229208 | 61229320 | 61229208 | ID=Msa0262360-mRNA-1:cds;Parent=Msa0262360-mRNA-1 |
| chr2_2 | CDS | 61229637 | 61229760 | 61229637 | ID=Msa0262360-mRNA-1:cds;Parent=Msa0262360-mRNA-1 |
| chr2_2 | three_prime_UTR | 61229761 | 61229906 | 61229761 | ID=Msa0262360-mRNA-1:three_prime_utr;Parent=Msa0262360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
