AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157200 MtrunA17_Chr7g0251311 97.541 122 3 0 117 238 5 126 3.28e-83 244
Msa1157200 MtrunA17_Chr7g0251311 45.600 125 50 6 1 113 5 123 2.99e-16 72.8
Msa1157200 MtrunA17_Chr7g0251301 86.822 129 4 1 1 116 1 129 3.03e-76 226
Msa1157200 MtrunA17_Chr7g0251301 50.370 135 48 5 117 238 1 129 1.28e-33 118
Msa1157200 MtrunA17_Chr7g0251291 44.275 262 63 9 16 238 3 220 3.09e-53 171
Msa1157200 MtrunA17_Chr7g0251281 52.756 127 45 4 127 238 4 130 5.57e-32 114
Msa1157200 MtrunA17_Chr7g0251281 48.062 129 38 5 16 116 3 130 8.70e-28 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTGTCCACATCTTTAT+TGG 0.171024 7_4:-46078778 None:intergenic
AAACAATCCCAAGACTTAAA+TGG 0.188649 7_4:+46073774 Msa1157200:CDS
AAAGGCTCCTCAAGTTTCTA+AGG 0.277345 7_4:+46073904 Msa1157200:CDS
TTGAACACTGATAACATCTT+TGG 0.286274 7_4:+46073866 Msa1157200:CDS
AAAGAAGCCCACGAAAGTTT+TGG 0.295586 7_4:+46073744 Msa1157200:CDS
CCGTAAGTACCTCGTTGGTT+TGG 0.301020 7_4:-46078626 None:intergenic
ACTTATATTTGAGATTTCTA+AGG 0.310038 7_4:+46078915 Msa1157200:CDS
AGAAGGATTAAACTATTTCA+TGG 0.325765 7_4:-46078965 None:intergenic
TGAGATTTCAAAGGCCTTGA+TGG 0.332753 7_4:+46073964 Msa1157200:CDS
CAAGGTTAACATGGGCTATT+AGG 0.336227 7_4:+46078752 Msa1157200:CDS
ATGAAAAGTGATACCATCTT+TGG 0.337936 7_4:+46078835 Msa1157200:CDS
CGTAAGTACCTCGTTGGTTT+GGG 0.339937 7_4:-46078625 None:intergenic
TTAGAAACTTGAGGAGCCTT+TGG 0.350151 7_4:-46073902 None:intergenic
TAAGGATCGTGTAGTTTCTA+AGG 0.360505 7_4:+46078861 Msa1157200:CDS
AGGCAGCACAAGCACCTAGA+AGG 0.375568 7_4:+46073689 Msa1157200:CDS
TAATCACCCATTTAAGTCTT+GGG 0.379591 7_4:-46073781 None:intergenic
ATTTGAGATTTCTAAGGCCT+TGG 0.387808 7_4:+46078921 Msa1157200:CDS
GAAGGAAGACCAAGGTTCTA+AGG 0.400859 7_4:+46078695 Msa1157200:CDS
CATGATGAAAAGCGTGGAAA+TGG 0.401757 7_4:+46078591 Msa1157200:intron
TTAATCACCCATTTAAGTCT+TGG 0.416457 7_4:-46073782 None:intergenic
AACAATCCCAAGACTTAAAT+GGG 0.430935 7_4:+46073775 Msa1157200:CDS
TTGATCCTCCAAAACTTTCG+TGG 0.435689 7_4:-46073752 None:intergenic
CTTCCTCCACAACATGGAAA+TGG 0.435734 7_4:+46073610 None:intergenic
AACACTGATAACATCTTTGG+TGG 0.460850 7_4:+46073869 Msa1157200:CDS
TGATACCATCTTTGGAACTA+AGG 0.464934 7_4:+46078843 Msa1157200:CDS
TCTTCTCAACCTTAGAACCT+TGG 0.471764 7_4:-46078704 None:intergenic
AGGTTCTAAGGTTGAGAAGA+AGG 0.473602 7_4:+46078707 Msa1157200:CDS
CTTAACCTCCAACGCATCAC+TGG 0.477581 7_4:-46073933 None:intergenic
CCAAACCAACGAGGTACTTA+CGG 0.478482 7_4:+46078626 Msa1157200:CDS
CACAAGCACCTAGAAGGGAG+TGG 0.489339 7_4:+46073695 Msa1157200:CDS
CTTCCTTCCATCACCGGTGA+TGG 0.490534 7_4:-46078680 None:intergenic
CGCCTCCGTAAGTACCTCGT+TGG 0.498443 7_4:-46078631 None:intergenic
CTTGGTCTTCCTTCCATCAC+CGG 0.498548 7_4:-46078686 None:intergenic
GGATTATGCCAGTGATGCGT+TGG 0.506201 7_4:+46073925 Msa1157200:CDS
CCACCATTGTTAGTTTGCTT+AGG 0.509208 7_4:-46073644 None:intergenic
GAGTAGTTCCAAGGTTAACA+TGG 0.518857 7_4:+46078743 Msa1157200:CDS
TGATCCTCCAAAACTTTCGT+GGG 0.519030 7_4:-46073751 None:intergenic
GAGGATGCCATCACCGGTGA+TGG 0.521516 7_4:+46078673 Msa1157200:CDS
GGCAGCACAAGCACCTAGAA+GGG 0.526093 7_4:+46073690 Msa1157200:CDS
CTAATAGCCCATGTTAACCT+TGG 0.534159 7_4:-46078751 None:intergenic
TTATGCCAGTGATGCGTTGG+AGG 0.545399 7_4:+46073928 Msa1157200:CDS
TTAAGCAATACTTGAGGAGA+AGG 0.553874 7_4:+46073669 Msa1157200:CDS
CTCGACGAGGATGCCATCAC+CGG 0.557338 7_4:+46078667 Msa1157200:CDS
TAAGGTTGAGAAGAAGGCAG+TGG 0.557373 7_4:+46078713 Msa1157200:CDS
ACGATCCTTAGTTCCAAAGA+TGG 0.563624 7_4:-46078848 None:intergenic
ATGCCATCACCGGTGATGGA+AGG 0.564522 7_4:+46078677 Msa1157200:CDS
TAGTTCATGAGAAGCCATCA+AGG 0.569874 7_4:-46073978 None:intergenic
GGTTGAGAAGAAGGCAGTGG+AGG 0.585451 7_4:+46078716 Msa1157200:CDS
ACACTGATAACATCTTTGGT+GGG 0.594046 7_4:+46073870 Msa1157200:CDS
GGAGGATAAGAGTAGTTCCA+AGG 0.595694 7_4:+46078734 Msa1157200:CDS
GCTCATATATGAGATTTCAA+AGG 0.596183 7_4:+46073955 Msa1157200:CDS
GCATAATCCTTAGAAACTTG+AGG 0.603591 7_4:-46073911 None:intergenic
ACAAGCACCTAGAAGGGAGT+GGG 0.610082 7_4:+46073696 Msa1157200:CDS
CAACGAGGTACTTACGGAGG+CGG 0.621368 7_4:+46078632 Msa1157200:CDS
CTGCCTAAGCAAACTAACAA+TGG 0.622301 7_4:+46073641 Msa1157200:CDS
TGGTGGGAAACAGATTCCAA+AGG 0.624293 7_4:+46073886 Msa1157200:CDS
AGTAGTTCCAAGGTTAACAT+GGG 0.641526 7_4:+46078744 Msa1157200:CDS
TAATTCATGAGAAGCAACCA+AGG 0.645785 7_4:-46078938 None:intergenic
TTAGGTCACCAATAAAGATG+TGG 0.652661 7_4:+46078770 Msa1157200:CDS
CCTAAGCAAACTAACAATGG+TGG 0.675131 7_4:+46073644 Msa1157200:CDS
GCGATATCAGCGACTCGACG+AGG 0.678608 7_4:+46078654 Msa1157200:CDS
GTGGCATTAAGCAATACTTG+AGG 0.690968 7_4:+46073663 Msa1157200:CDS
CGGTGATGGAAGGAAGACCA+AGG 0.711559 7_4:+46078687 Msa1157200:CDS
AACCAACGAGGTACTTACGG+AGG 0.715584 7_4:+46078629 Msa1157200:CDS
CACTGATACCCAAACCAACG+AGG 0.721556 7_4:+46078617 Msa1157200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTAAATAAT+AGG + chr7_4:46075801-46075820 Msa1157200:intron 0.0%
!!! AATTTTAAACGAATAATTAT+AGG - chr7_4:46074153-46074172 None:intergenic 10.0%
!!! GATAAAATAATTTTTTTTGA+AGG + chr7_4:46074690-46074709 Msa1157200:intron 10.0%
!! ATGAAAAAATAAAGATAAAA+AGG + chr7_4:46077301-46077320 Msa1157200:intron 10.0%
!!! ATTTTATTTATGATATACTA+TGG - chr7_4:46077885-46077904 None:intergenic 10.0%
!!! TTTTTTTTGTTTTTGTTTTT+GGG - chr7_4:46078060-46078079 None:intergenic 10.0%
!!! AAATAATTTTTTTTGAAGGA+AGG + chr7_4:46074694-46074713 Msa1157200:intron 15.0%
!!! AAATATAAGTTCTACTTTTT+CGG - chr7_4:46075191-46075210 None:intergenic 15.0%
!! AAAAAAAAACTAAAGCAAAT+AGG - chr7_4:46075781-46075800 None:intergenic 15.0%
!! GATTAAGAAGAAATAATAAA+TGG + chr7_4:46076701-46076720 Msa1157200:intron 15.0%
!!! CATTTAAACACAAATTTTTT+TGG - chr7_4:46076833-46076852 None:intergenic 15.0%
!! TATTATAGTACAAAATATAC+AGG - chr7_4:46077081-46077100 None:intergenic 15.0%
!!! ATATTTATTTATTTTTGACG+TGG - chr7_4:46077133-46077152 None:intergenic 15.0%
!!! TTTTTAATCACAAATATTAG+CGG - chr7_4:46077542-46077561 None:intergenic 15.0%
!! AAGTTTGACTAAAATAATAT+GGG - chr7_4:46077801-46077820 None:intergenic 15.0%
!!! AATTATTTTATTATGTAGCA+TGG + chr7_4:46077852-46077871 Msa1157200:intron 15.0%
!!! GTTTTTTTTGTTTTTGTTTT+TGG - chr7_4:46078061-46078080 None:intergenic 15.0%
!!! GGAGTATTATTATATAATTA+GGG - chr7_4:46078345-46078364 None:intergenic 15.0%
!! TATATGTTGGAAAATTTAAT+GGG - chr7_4:46078455-46078474 None:intergenic 15.0%
!! TCTATGATATAATATGTTTA+TGG - chr7_4:46078518-46078537 None:intergenic 15.0%
!!! AAATTTGTCAACATTTTCAA+TGG - chr7_4:46073812-46073831 None:intergenic 20.0%
!!! ATGTTGACAAATTTTAAGAA+TGG + chr7_4:46073818-46073837 Msa1157200:intron 20.0%
!!! TATTTATATCGACTCTTTAA+TGG + chr7_4:46074507-46074526 Msa1157200:intron 20.0%
!!! GTTTTAAAATAGACCTTAAA+TGG - chr7_4:46074588-46074607 None:intergenic 20.0%
!!! GTTGTTTTTTTAAGCTATAT+TGG + chr7_4:46074759-46074778 Msa1157200:intron 20.0%
!! TATGTTTGGATTGTTTATTT+GGG - chr7_4:46074891-46074910 None:intergenic 20.0%
!!! AGTATCTCAAATAATTTGTA+GGG - chr7_4:46075001-46075020 None:intergenic 20.0%
!!! AAGTATCTCAAATAATTTGT+AGG - chr7_4:46075002-46075021 None:intergenic 20.0%
!!! TTTTTCTTCAAGTAATCTAA+TGG - chr7_4:46075141-46075160 None:intergenic 20.0%
!! TCTCTGTTTAAAAATAAGTA+GGG - chr7_4:46076050-46076069 None:intergenic 20.0%
!! TTCTCTGTTTAAAAATAAGT+AGG - chr7_4:46076051-46076070 None:intergenic 20.0%
!!! ATGTGAAAAATTGACTTTTA+CGG + chr7_4:46076146-46076165 Msa1157200:intron 20.0%
!! TATAAATCCAAAATTTGTCA+CGG - chr7_4:46076267-46076286 None:intergenic 20.0%
!!! TTTTGGATTTATAGAATTTG+TGG + chr7_4:46076274-46076293 Msa1157200:intron 20.0%
!! TTTGGATTTATAGAATTTGT+GGG + chr7_4:46076275-46076294 Msa1157200:intron 20.0%
!!! ACTAGCATTTTTACTTTTAT+TGG - chr7_4:46076338-46076357 None:intergenic 20.0%
!! AATAAAAGTAAAAATGCTAG+TGG + chr7_4:46076337-46076356 Msa1157200:intron 20.0%
!! AAATTTCAACAGTTAATACA+TGG + chr7_4:46076679-46076698 Msa1157200:intron 20.0%
!! AAATTTGTGTTTAAATGTGA+TGG + chr7_4:46076836-46076855 Msa1157200:intron 20.0%
!! TATTTGTAATACTCTAGTTA+AGG - chr7_4:46077252-46077271 None:intergenic 20.0%
!!! ACAAAAAAGACATTTTAGTT+TGG + chr7_4:46077348-46077367 Msa1157200:intron 20.0%
!! AAAACTAAAAGTTAATGAGT+TGG + chr7_4:46077461-46077480 Msa1157200:intron 20.0%
!!! TTGGAGATATTTTTTTTTTG+AGG + chr7_4:46077480-46077499 Msa1157200:intron 20.0%
!!! TGGAGATATTTTTTTTTTGA+GGG + chr7_4:46077481-46077500 Msa1157200:intron 20.0%
!!! TTATTTAATGACGGATTATT+TGG + chr7_4:46077653-46077672 Msa1157200:intron 20.0%
!! GAAGTTTGACTAAAATAATA+TGG - chr7_4:46077802-46077821 None:intergenic 20.0%
!!! TCCTAAAACAAAATTTTGTA+TGG + chr7_4:46077983-46078002 Msa1157200:intron 20.0%
!!! TCCATACAAAATTTTGTTTT+AGG - chr7_4:46077987-46078006 None:intergenic 20.0%
!! TTAGATTATACCATCATATA+AGG - chr7_4:46078257-46078276 None:intergenic 20.0%
!!! CTAATTAATTTTTCTGTAGA+AGG + chr7_4:46078273-46078292 Msa1157200:intron 20.0%
!!! GGGAGTATTATTATATAATT+AGG - chr7_4:46078346-46078365 None:intergenic 20.0%
!! GTATATGTTGGAAAATTTAA+TGG - chr7_4:46078456-46078475 None:intergenic 20.0%
!! ATATGTTTATGGAAATGAAT+TGG - chr7_4:46078507-46078526 None:intergenic 20.0%
!!! ACTTATATTTGAGATTTCTA+AGG + chr7_4:46078915-46078934 Msa1157200:CDS 20.0%
! TAGCAAGTGAATAAAAAGAA+AGG - chr7_4:46074081-46074100 None:intergenic 25.0%
! TTGCTAAGATTTATGTCATA+GGG + chr7_4:46074095-46074114 Msa1157200:intron 25.0%
!! AAACCTTTATTTCTCATTCT+TGG - chr7_4:46074206-46074225 None:intergenic 25.0%
! TTACAACATTTAATTGTCGA+TGG + chr7_4:46074225-46074244 Msa1157200:intron 25.0%
! AATTATCTATTTACCCTCAA+CGG - chr7_4:46074266-46074285 None:intergenic 25.0%
! AGGGTAAATAGATAATTTCT+AGG + chr7_4:46074269-46074288 Msa1157200:intron 25.0%
!!! TAAGTTTTGTTAAGCTGTTT+AGG - chr7_4:46074850-46074869 None:intergenic 25.0%
! GTATGTTTGGATTGTTTATT+TGG - chr7_4:46074892-46074911 None:intergenic 25.0%
!! TATTGAACTAAAGGTATGTT+TGG - chr7_4:46074905-46074924 None:intergenic 25.0%
! ACAATCAGTTATTGAACTAA+AGG - chr7_4:46074914-46074933 None:intergenic 25.0%
!!! AACAAAGTCGCTTATTTTTA+AGG + chr7_4:46075238-46075257 Msa1157200:intron 25.0%
!!! ACCTAAATAGTTTTTAGCAA+TGG + chr7_4:46075562-46075581 Msa1157200:intron 25.0%
! TCCATTGCTAAAAACTATTT+AGG - chr7_4:46075566-46075585 None:intergenic 25.0%
!!! GTTTGAAACGAACTTTTTTT+TGG - chr7_4:46075944-46075963 None:intergenic 25.0%
! GGATAGAAATATAATTGTTG+AGG + chr7_4:46076296-46076315 Msa1157200:intron 25.0%
!!! ACGTTTTTCCTTTAATTTTG+GGG - chr7_4:46076460-46076479 None:intergenic 25.0%
!!! GACGTTTTTCCTTTAATTTT+GGG - chr7_4:46076461-46076480 None:intergenic 25.0%
! AAAATTAAAGGAAAAACGTC+CGG + chr7_4:46076461-46076480 Msa1157200:intron 25.0%
! GTACACATTTAAACACTATT+TGG - chr7_4:46076811-46076830 None:intergenic 25.0%
!!! AACCACTTTATTTTCTTTTC+AGG - chr7_4:46076934-46076953 None:intergenic 25.0%
! CTATAATATTGTGTTGAGAT+TGG + chr7_4:46077093-46077112 Msa1157200:intron 25.0%
! ATAAAAAGGCAGTAAATAAG+TGG + chr7_4:46077315-46077334 Msa1157200:intron 25.0%
! TCTCGTACATTATTTAATGA+CGG + chr7_4:46077644-46077663 Msa1157200:intron 25.0%
! GGTATACATTATATTGAGTT+TGG + chr7_4:46077674-46077693 Msa1157200:intron 25.0%
! ACATTATATTGAGTTTGGTT+TGG + chr7_4:46077679-46077698 Msa1157200:intron 25.0%
!! ACAAAATTTTGTATGGATCA+AGG + chr7_4:46077990-46078009 Msa1157200:intron 25.0%
! AATTTGTCCATTATTTGCAA+CGG - chr7_4:46078094-46078113 None:intergenic 25.0%
!! GTATTTAAGTTTACCTATCA+TGG + chr7_4:46078119-46078138 Msa1157200:intron 25.0%
! TCATATCTTACGATAATGTA+TGG - chr7_4:46078181-46078200 None:intergenic 25.0%
!!! CACAATATTTGTTATCTAGT+TGG - chr7_4:46078216-46078235 None:intergenic 25.0%
! TCAATACTAACCTTATATGA+TGG + chr7_4:46078244-46078263 Msa1157200:intron 25.0%
! AAGATTATATAGAATGAGAG+TGG + chr7_4:46078314-46078333 Msa1157200:intron 25.0%
GGAAAAAGATGAAGATCATA+AGG + chr7_4:46073717-46073736 Msa1157200:CDS 30.0%
AAACAATCCCAAGACTTAAA+TGG + chr7_4:46073774-46073793 Msa1157200:CDS 30.0%
AACAATCCCAAGACTTAAAT+GGG + chr7_4:46073775-46073794 Msa1157200:CDS 30.0%
TAATCACCCATTTAAGTCTT+GGG - chr7_4:46073784-46073803 None:intergenic 30.0%
TTAATCACCCATTTAAGTCT+TGG - chr7_4:46073785-46073804 None:intergenic 30.0%
TTGAACACTGATAACATCTT+TGG + chr7_4:46073866-46073885 Msa1157200:CDS 30.0%
GCTCATATATGAGATTTCAA+AGG + chr7_4:46073955-46073974 Msa1157200:CDS 30.0%
AGAGATACATGTTACTACAT+GGG - chr7_4:46074007-46074026 None:intergenic 30.0%
AAGAGATACATGTTACTACA+TGG - chr7_4:46074008-46074027 None:intergenic 30.0%
CTTGCTAAGATTTATGTCAT+AGG + chr7_4:46074094-46074113 Msa1157200:intron 30.0%
ATGTTACACAGAAAATGTTG+AGG + chr7_4:46074121-46074140 Msa1157200:intron 30.0%
ACTCCAAGAATGAGAAATAA+AGG + chr7_4:46074200-46074219 Msa1157200:intron 30.0%
ACATTTAATTGTCGATGGAA+CGG + chr7_4:46074230-46074249 Msa1157200:intron 30.0%
TGATGAGTGTTTGTGTTATA+AGG - chr7_4:46074623-46074642 None:intergenic 30.0%
!!! GTGTGCATAAGCTATTTTTT+AGG + chr7_4:46074663-46074682 Msa1157200:intron 30.0%
TGTTTATTTGGGTGTAACTT+TGG - chr7_4:46074880-46074899 None:intergenic 30.0%
! CAAATAATTTGTAGGGAGAT+AGG - chr7_4:46074994-46075013 None:intergenic 30.0%
TTATCTCCATGAACATAACT+TGG + chr7_4:46075055-46075074 Msa1157200:intron 30.0%
!! GAACTTTATTCGAGTTGTAT+CGG - chr7_4:46075275-46075294 None:intergenic 30.0%
GATACAACTCGAATAAAGTT+CGG + chr7_4:46075274-46075293 Msa1157200:intron 30.0%
! CTTAATCTTTAGCTCAAGTT+CGG - chr7_4:46075350-46075369 None:intergenic 30.0%
! TATATATAGTTCGACTCGTT+TGG + chr7_4:46075399-46075418 Msa1157200:intron 30.0%
! GAAGCACTATAAAACAACAA+TGG + chr7_4:46075528-46075547 Msa1157200:intron 30.0%
AAACAACAATGGTAAAAGAG+TGG + chr7_4:46075539-46075558 Msa1157200:intron 30.0%
ACTTCAAATACTTTCGATGT+GGG - chr7_4:46075646-46075665 None:intergenic 30.0%
TACTTCAAATACTTTCGATG+TGG - chr7_4:46075647-46075666 None:intergenic 30.0%
TTTGCTACTCTTTGATACAA+AGG + chr7_4:46075699-46075718 Msa1157200:intron 30.0%
TTCACGGTTGTATTATTTCA+CGG + chr7_4:46075737-46075756 Msa1157200:intron 30.0%
! TTTAAAATTCACGAGCAACT+CGG - chr7_4:46075906-46075925 None:intergenic 30.0%
TGTTTAAAAATAAGTAGGGC+TGG - chr7_4:46076046-46076065 None:intergenic 30.0%
! TTCAAAACCGTGACAAATTT+TGG + chr7_4:46076257-46076276 Msa1157200:intron 30.0%
ATGAAATAAATAGCAGCGAA+TGG + chr7_4:46076387-46076406 Msa1157200:intron 30.0%
TGAAATAAATAGCAGCGAAT+GGG + chr7_4:46076388-46076407 Msa1157200:intron 30.0%
!! GGACGTTTTTCCTTTAATTT+TGG - chr7_4:46076462-46076481 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr7_4:46076506-46076525 Msa1157200:intron 30.0%
AACTCAGACACCAAAAAAAA+AGG + chr7_4:46076541-46076560 Msa1157200:intron 30.0%
ACTCAGACACCAAAAAAAAA+GGG + chr7_4:46076542-46076561 Msa1157200:intron 30.0%
!! CGTTGTTTTCCCTTTTTTTT+TGG - chr7_4:46076554-46076573 None:intergenic 30.0%
AAAAAGAAACCAAACAAGAG+AGG - chr7_4:46076595-46076614 None:intergenic 30.0%
AAAAAGAAGCCAAATAAGAG+AGG - chr7_4:46076651-46076670 None:intergenic 30.0%
!! TCTCTTATTTGGCTTCTTTT+TGG + chr7_4:46076650-46076669 Msa1157200:intron 30.0%
ATATGTTAAAGAACGATGAG+AGG + chr7_4:46076905-46076924 Msa1157200:intron 30.0%
TGCCTGAAAAGAAAATAAAG+TGG + chr7_4:46076929-46076948 Msa1157200:intron 30.0%
TACTATCTGTAGTAAGACAA+TGG + chr7_4:46076965-46076984 Msa1157200:intron 30.0%
ACTATCTGTAGTAAGACAAT+GGG + chr7_4:46076966-46076985 Msa1157200:intron 30.0%
TAAAAGTTAATGAATCCCGT+AGG + chr7_4:46077378-46077397 Msa1157200:intron 30.0%
!!! TTTTTTGTCAAGTAGTCTAG+TGG - chr7_4:46077439-46077458 None:intergenic 30.0%
!!! TTTTTTTTTTGAGGGAGAGT+TGG + chr7_4:46077489-46077508 Msa1157200:intron 30.0%
AAGATTATAGATCTTGCATC+AGG + chr7_4:46077745-46077764 Msa1157200:intron 30.0%
! ATATGGGACGTATACATTTT+TGG - chr7_4:46077785-46077804 None:intergenic 30.0%
AAATCTACCGTTGCAAATAA+TGG + chr7_4:46078084-46078103 Msa1157200:intron 30.0%
TTTGAACGTGAATTATTGGT+GGG - chr7_4:46078398-46078417 None:intergenic 30.0%
ACAGTTTGAACGTGAATTAT+TGG - chr7_4:46078402-46078421 None:intergenic 30.0%
GTACTTGCATATGTATATGT+TGG - chr7_4:46078468-46078487 None:intergenic 30.0%
!! AAAGATGGTATCACTTTTCA+TGG - chr7_4:46078836-46078855 None:intergenic 30.0%
ATGAAAAGTGATACCATCTT+TGG + chr7_4:46078835-46078854 Msa1157200:CDS 30.0%
TTAAGCAATACTTGAGGAGA+AGG + chr7_4:46073669-46073688 Msa1157200:CDS 35.0%
AACACTGATAACATCTTTGG+TGG + chr7_4:46073869-46073888 Msa1157200:CDS 35.0%
ACACTGATAACATCTTTGGT+GGG + chr7_4:46073870-46073889 Msa1157200:CDS 35.0%
GCATAATCCTTAGAAACTTG+AGG - chr7_4:46073914-46073933 None:intergenic 35.0%
CTAAGATTTATGTCATAGGG+TGG + chr7_4:46074098-46074117 Msa1157200:intron 35.0%
! AAACCTCAAGAGCAATGTTT+TGG + chr7_4:46074311-46074330 Msa1157200:intron 35.0%
TAACCAAAACATTGCTCTTG+AGG - chr7_4:46074317-46074336 None:intergenic 35.0%
!!! CAAGAGCAATGTTTTGGTTA+CGG + chr7_4:46074317-46074336 Msa1157200:intron 35.0%
!!! AAGAGCAATGTTTTGGTTAC+GGG + chr7_4:46074318-46074337 Msa1157200:intron 35.0%
AACTCATGCTAGTGTATTCT+CGG - chr7_4:46074425-46074444 None:intergenic 35.0%
TGGGAATGAACAAAAACAGA+TGG + chr7_4:46074467-46074486 Msa1157200:intron 35.0%
GGGAATGAACAAAAACAGAT+GGG + chr7_4:46074468-46074487 Msa1157200:intron 35.0%
AGACTAGGTCGAAATTGAAA+AGG - chr7_4:46074533-46074552 None:intergenic 35.0%
ACCTAGTCTACAATGTGTAT+GGG + chr7_4:46074544-46074563 Msa1157200:intron 35.0%
AATGGTTTACGAGGAAAGAT+AGG - chr7_4:46074570-46074589 None:intergenic 35.0%
CTTTCCTCGTAAACCATTTA+AGG + chr7_4:46074572-46074591 Msa1157200:intron 35.0%
TAGACCTTAAATGGTTTACG+AGG - chr7_4:46074579-46074598 None:intergenic 35.0%
!!! AAGTCGCTTATTTTTAAGGC+TGG + chr7_4:46075242-46075261 Msa1157200:intron 35.0%
GGTAATTAGTTCGTTGAACT+TGG + chr7_4:46075307-46075326 Msa1157200:intron 35.0%
CTACTCTTTGATACAAAGGT+GGG + chr7_4:46075703-46075722 Msa1157200:intron 35.0%
GTGGGCAATCTATTATTTCA+CGG + chr7_4:46075721-46075740 Msa1157200:intron 35.0%
GTTGTATTATTTCACGGTTG+TGG + chr7_4:46075743-46075762 Msa1157200:intron 35.0%
ATTATTTCACGGTTGTGGAA+TGG + chr7_4:46075748-46075767 Msa1157200:intron 35.0%
!!! ACTTTTTTTTGGCTCGAGTT+CGG - chr7_4:46075933-46075952 None:intergenic 35.0%
TGACTCGATAAGAATTGGTT+CGG - chr7_4:46075984-46076003 None:intergenic 35.0%
CACCAGCAAAGTCAAAATTT+GGG - chr7_4:46076102-46076121 None:intergenic 35.0%
!! GTAATGGGAAACTCAGATTT+TGG - chr7_4:46076204-46076223 None:intergenic 35.0%
AATCTGAGTTTCCCATTACA+CGG + chr7_4:46076205-46076224 Msa1157200:intron 35.0%
!!! TTTAATTTTGGGGTACTCCA+CGG - chr7_4:46076450-46076469 None:intergenic 35.0%
! TTGGTAGAGATAATTTGTGC+AGG + chr7_4:46077411-46077430 Msa1157200:intron 35.0%
! TGGTAGAGATAATTTGTGCA+GGG + chr7_4:46077412-46077431 Msa1157200:intron 35.0%
!!! CATTTTTGGTTGCGAGATTA+AGG - chr7_4:46077771-46077790 None:intergenic 35.0%
TAATAAGTTGCATGTGGGAA+TGG - chr7_4:46077933-46077952 None:intergenic 35.0%
CCAGTTAATAAGTTGCATGT+GGG - chr7_4:46077938-46077957 None:intergenic 35.0%
TCCAGTTAATAAGTTGCATG+TGG - chr7_4:46077939-46077958 None:intergenic 35.0%
GTTTGAACGTGAATTATTGG+TGG - chr7_4:46078399-46078418 None:intergenic 35.0%
AGTAGTTCCAAGGTTAACAT+GGG + chr7_4:46078744-46078763 Msa1157200:CDS 35.0%
TTAGGTCACCAATAAAGATG+TGG + chr7_4:46078770-46078789 Msa1157200:CDS 35.0%
! AGCTTTGTCCACATCTTTAT+TGG - chr7_4:46078781-46078800 None:intergenic 35.0%
!! TGATACCATCTTTGGAACTA+AGG + chr7_4:46078843-46078862 Msa1157200:CDS 35.0%
TAAGGATCGTGTAGTTTCTA+AGG + chr7_4:46078861-46078880 Msa1157200:CDS 35.0%
! TTATTCTCGTGATGCTTTTG+AGG + chr7_4:46078888-46078907 Msa1157200:CDS 35.0%
!! ATTTGAGATTTCTAAGGCCT+TGG + chr7_4:46078921-46078940 Msa1157200:CDS 35.0%
TAATTCATGAGAAGCAACCA+AGG - chr7_4:46078941-46078960 None:intergenic 35.0%
CTGCCTAAGCAAACTAACAA+TGG + chr7_4:46073641-46073660 Msa1157200:CDS 40.0%
!! CCACCATTGTTAGTTTGCTT+AGG - chr7_4:46073647-46073666 None:intergenic 40.0%
CCTAAGCAAACTAACAATGG+TGG + chr7_4:46073644-46073663 Msa1157200:CDS 40.0%
GTGGCATTAAGCAATACTTG+AGG + chr7_4:46073663-46073682 Msa1157200:CDS 40.0%
! AAAGAAGCCCACGAAAGTTT+TGG + chr7_4:46073744-46073763 Msa1157200:CDS 40.0%
TGATCCTCCAAAACTTTCGT+GGG - chr7_4:46073754-46073773 None:intergenic 40.0%
TTGATCCTCCAAAACTTTCG+TGG - chr7_4:46073755-46073774 None:intergenic 40.0%
TTAGAAACTTGAGGAGCCTT+TGG - chr7_4:46073905-46073924 None:intergenic 40.0%
AAAGGCTCCTCAAGTTTCTA+AGG + chr7_4:46073904-46073923 Msa1157200:CDS 40.0%
TGAGATTTCAAAGGCCTTGA+TGG + chr7_4:46073964-46073983 Msa1157200:CDS 40.0%
TAGTTCATGAGAAGCCATCA+AGG - chr7_4:46073981-46074000 None:intergenic 40.0%
!!! AGAGCAATGTTTTGGTTACG+GGG + chr7_4:46074319-46074338 Msa1157200:intron 40.0%
GGGAATGAGCAAAAACAGAT+AGG - chr7_4:46074369-46074388 None:intergenic 40.0%
AGCATGAGTTAACTTACGCT+CGG + chr7_4:46074435-46074454 Msa1157200:intron 40.0%
!!! TTACGCTCGGCTATTTTGAT+GGG + chr7_4:46074448-46074467 Msa1157200:intron 40.0%
GACCTAGTCTACAATGTGTA+TGG + chr7_4:46074543-46074562 Msa1157200:intron 40.0%
GGAGATAGGCAAAATTTGAG+GGG - chr7_4:46074980-46074999 None:intergenic 40.0%
GGGAGATAGGCAAAATTTGA+GGG - chr7_4:46074981-46075000 None:intergenic 40.0%
AGGGAGATAGGCAAAATTTG+AGG - chr7_4:46074982-46075001 None:intergenic 40.0%
TGGCAACCAAGTTATGTTCA+TGG - chr7_4:46075064-46075083 None:intergenic 40.0%
ATAAAGTTCGGAACTCGACT+CGG + chr7_4:46075286-46075305 Msa1157200:intron 40.0%
! GTATGTTGCTTGTAGTGCTA+TGG + chr7_4:46075587-46075606 Msa1157200:intron 40.0%
GCTACTCTTTGATACAAAGG+TGG + chr7_4:46075702-46075721 Msa1157200:intron 40.0%
!!! GTCCCAAATTTTGACTTTGC+TGG + chr7_4:46076097-46076116 Msa1157200:intron 40.0%
GCACCAGCAAAGTCAAAATT+TGG - chr7_4:46076103-46076122 None:intergenic 40.0%
! GTGGAGTACCCCAAAATTAA+AGG + chr7_4:46076449-46076468 Msa1157200:intron 40.0%
TGAGCTTAACTCAGTTCGTA+AGG + chr7_4:46076484-46076503 Msa1157200:intron 40.0%
GTGTGCATTCCTCTCTTATT+TGG + chr7_4:46076639-46076658 Msa1157200:intron 40.0%
TGAAAGAGATCACATGAGCT+GGG - chr7_4:46077029-46077048 None:intergenic 40.0%
TTGAAAGAGATCACATGAGC+TGG - chr7_4:46077030-46077049 None:intergenic 40.0%
TACTCTAGTTAAGGAAGCAG+CGG - chr7_4:46077243-46077262 None:intergenic 40.0%
TACCAACTGAACTACACCTA+CGG - chr7_4:46077397-46077416 None:intergenic 40.0%
! GGTAGAGATAATTTGTGCAG+GGG + chr7_4:46077413-46077432 Msa1157200:intron 40.0%
CCCACATGCAACTTATTAAC+TGG + chr7_4:46077935-46077954 Msa1157200:intron 40.0%
AATAGAGCTCGTTCCATGAT+AGG - chr7_4:46078135-46078154 None:intergenic 40.0%
! TGAATTATTGGTGGGTGACT+CGG - chr7_4:46078390-46078409 None:intergenic 40.0%
!! ATGAAGAGTGCTTGGGATTA+TGG - chr7_4:46078571-46078590 None:intergenic 40.0%
!! CATCATGATGAAGAGTGCTT+GGG - chr7_4:46078578-46078597 None:intergenic 40.0%
!! TCATCATGATGAAGAGTGCT+TGG - chr7_4:46078579-46078598 None:intergenic 40.0%
CTTCATCATGATGAAAAGCG+TGG + chr7_4:46078585-46078604 Msa1157200:intron 40.0%
! CATGATGAAAAGCGTGGAAA+TGG + chr7_4:46078591-46078610 Msa1157200:intron 40.0%
TCTTCTCAACCTTAGAACCT+TGG - chr7_4:46078707-46078726 None:intergenic 40.0%
!! AGGTTCTAAGGTTGAGAAGA+AGG + chr7_4:46078707-46078726 Msa1157200:CDS 40.0%
GAGTAGTTCCAAGGTTAACA+TGG + chr7_4:46078743-46078762 Msa1157200:CDS 40.0%
CTAATAGCCCATGTTAACCT+TGG - chr7_4:46078754-46078773 None:intergenic 40.0%
! CAAGGTTAACATGGGCTATT+AGG + chr7_4:46078752-46078771 Msa1157200:CDS 40.0%
ACGATCCTTAGTTCCAAAGA+TGG - chr7_4:46078851-46078870 None:intergenic 40.0%
! TCTTTTTCCCACTCCCTTCT+AGG - chr7_4:46073706-46073725 None:intergenic 45.0%
TGGTGGGAAACAGATTCCAA+AGG + chr7_4:46073886-46073905 Msa1157200:CDS 45.0%
ATGTAGGTGTACTTCTCAGC+GGG - chr7_4:46074389-46074408 None:intergenic 45.0%
CATGTAGGTGTACTTCTCAG+CGG - chr7_4:46074390-46074409 None:intergenic 45.0%
!! CTTACGCTCGGCTATTTTGA+TGG + chr7_4:46074447-46074466 Msa1157200:intron 45.0%
GCCCATACACATTGTAGACT+AGG - chr7_4:46074548-46074567 None:intergenic 45.0%
TGCCAACAAAGACAGTGCAT+CGG + chr7_4:46075079-46075098 Msa1157200:intron 45.0%
AATTCACGAGCAACTCGGTT+CGG - chr7_4:46075901-46075920 None:intergenic 45.0%
! CGGCTTGACTCGATAAGAAT+TGG - chr7_4:46075989-46076008 None:intergenic 45.0%
CAACACATCCACCGTGTAAT+GGG - chr7_4:46076219-46076238 None:intergenic 45.0%
CATTACACGGTGGATGTGTT+GGG + chr7_4:46076218-46076237 Msa1157200:intron 45.0%
GTGAAATTGTTATGCTGCCG+TGG + chr7_4:46076430-46076449 Msa1157200:intron 45.0%
ACGAACTGAGTTAAGCTCAC+CGG - chr7_4:46076483-46076502 None:intergenic 45.0%
GTGTGCATTCCTCTCTTGTT+TGG + chr7_4:46076583-46076602 Msa1157200:intron 45.0%
ACCAACTGAACTACACCTAC+GGG - chr7_4:46077396-46077415 None:intergenic 45.0%
TGCATATGATGTGAGCGTGT+GGG - chr7_4:46078366-46078385 None:intergenic 45.0%
ATGCATATGATGTGAGCGTG+TGG - chr7_4:46078367-46078386 None:intergenic 45.0%
!! AAGAGTGCTTGGGATTATGG+AGG - chr7_4:46078568-46078587 None:intergenic 45.0%
!! CGTAAGTACCTCGTTGGTTT+GGG - chr7_4:46078628-46078647 None:intergenic 45.0%
! CCAAACCAACGAGGTACTTA+CGG + chr7_4:46078626-46078645 Msa1157200:CDS 45.0%
GAAGGAAGACCAAGGTTCTA+AGG + chr7_4:46078695-46078714 Msa1157200:CDS 45.0%
TAAGGTTGAGAAGAAGGCAG+TGG + chr7_4:46078713-46078732 Msa1157200:CDS 45.0%
GGAGGATAAGAGTAGTTCCA+AGG + chr7_4:46078734-46078753 Msa1157200:CDS 45.0%
ACAAGCACCTAGAAGGGAGT+GGG + chr7_4:46073696-46073715 Msa1157200:CDS 50.0%
!! GAAGCCCACGAAAGTTTTGG+AGG + chr7_4:46073747-46073766 Msa1157200:CDS 50.0%
GGATTATGCCAGTGATGCGT+TGG + chr7_4:46073925-46073944 Msa1157200:CDS 50.0%
TTATGCCAGTGATGCGTTGG+AGG + chr7_4:46073928-46073947 Msa1157200:CDS 50.0%
CTTAACCTCCAACGCATCAC+TGG - chr7_4:46073936-46073955 None:intergenic 50.0%
CGGCGTGAGTTAACTCATGT+AGG - chr7_4:46074405-46074424 None:intergenic 50.0%
GTCCGATGCACTGTCTTTGT+TGG - chr7_4:46075084-46075103 None:intergenic 50.0%
! TAGCTCAAGTTCGGCTCGTT+TGG - chr7_4:46075341-46075360 None:intergenic 50.0%
CTGAGTTTCCCATTACACGG+TGG + chr7_4:46076208-46076227 Msa1157200:intron 50.0%
CCAACACATCCACCGTGTAA+TGG - chr7_4:46076220-46076239 None:intergenic 50.0%
CCATTACACGGTGGATGTGT+TGG + chr7_4:46076217-46076236 Msa1157200:intron 50.0%
TCCCGTAGGTGTAGTTCAGT+TGG + chr7_4:46077392-46077411 Msa1157200:intron 50.0%
AGTGCTTGGGATTATGGAGG+AGG - chr7_4:46078565-46078584 None:intergenic 50.0%
CACTGATACCCAAACCAACG+AGG + chr7_4:46078617-46078636 Msa1157200:CDS 50.0%
! CCGTAAGTACCTCGTTGGTT+TGG - chr7_4:46078629-46078648 None:intergenic 50.0%
! AACCAACGAGGTACTTACGG+AGG + chr7_4:46078629-46078648 Msa1157200:CDS 50.0%
! CTTGGTCTTCCTTCCATCAC+CGG - chr7_4:46078689-46078708 None:intergenic 50.0%
AGGCAGCACAAGCACCTAGA+AGG + chr7_4:46073689-46073708 Msa1157200:CDS 55.0%
GGCAGCACAAGCACCTAGAA+GGG + chr7_4:46073690-46073709 Msa1157200:CDS 55.0%
CACAAGCACCTAGAAGGGAG+TGG + chr7_4:46073695-46073714 Msa1157200:CDS 55.0%
GAGTCGAACTCGTCTGAGCT+CGG - chr7_4:46076009-46076028 None:intergenic 55.0%
! GGAGGAGGAAGTGTGAGAAG+AGG - chr7_4:46078550-46078569 None:intergenic 55.0%
! CAACGAGGTACTTACGGAGG+CGG + chr7_4:46078632-46078651 Msa1157200:CDS 55.0%
!! ATGCCATCACCGGTGATGGA+AGG + chr7_4:46078677-46078696 Msa1157200:CDS 55.0%
CTTCCTTCCATCACCGGTGA+TGG - chr7_4:46078683-46078702 None:intergenic 55.0%
!! CGGTGATGGAAGGAAGACCA+AGG + chr7_4:46078687-46078706 Msa1157200:CDS 55.0%
GGTTGAGAAGAAGGCAGTGG+AGG + chr7_4:46078716-46078735 Msa1157200:CDS 55.0%
ACGGTAGCGAACTGCCGTTG+AGG + chr7_4:46074249-46074268 Msa1157200:intron 60.0%
CGGTAGCGAACTGCCGTTGA+GGG + chr7_4:46074250-46074269 Msa1157200:intron 60.0%
!! GCAACTCGGTTCGGCTCGTT+AGG - chr7_4:46075892-46075911 None:intergenic 60.0%
CGCCTCCGTAAGTACCTCGT+TGG - chr7_4:46078634-46078653 None:intergenic 60.0%
GCGATATCAGCGACTCGACG+AGG + chr7_4:46078654-46078673 Msa1157200:CDS 60.0%
CTCGACGAGGATGCCATCAC+CGG + chr7_4:46078667-46078686 Msa1157200:CDS 60.0%
GAGGATGCCATCACCGGTGA+TGG + chr7_4:46078673-46078692 Msa1157200:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46073623 46078975 46073623 ID=Msa1157200;Name=Msa1157200
chr7_4 mRNA 46073623 46078975 46073623 ID=Msa1157200-mRNA-1;Parent=Msa1157200;Name=Msa1157200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|3|0|239
chr7_4 exon 46073623 46073796 46073623 ID=Msa1157200-mRNA-1:exon:11991;Parent=Msa1157200-mRNA-1
chr7_4 exon 46073836 46074008 46073836 ID=Msa1157200-mRNA-1:exon:11992;Parent=Msa1157200-mRNA-1
chr7_4 exon 46078603 46078975 46078603 ID=Msa1157200-mRNA-1:exon:11993;Parent=Msa1157200-mRNA-1
chr7_4 CDS 46073623 46073796 46073623 ID=Msa1157200-mRNA-1:cds;Parent=Msa1157200-mRNA-1
chr7_4 CDS 46073836 46074008 46073836 ID=Msa1157200-mRNA-1:cds;Parent=Msa1157200-mRNA-1
chr7_4 CDS 46078603 46078975 46078603 ID=Msa1157200-mRNA-1:cds;Parent=Msa1157200-mRNA-1
Gene Sequence

>Msa1157200

ATGGAAATGGAATCACTACTGCCTAAGCAAACTAACAATGGTGGCATTAAGCAATACTTGAGGAGAAGGCAGCACAAGCACCTAGAAGGGAGTGGGAAAAAGATGAAGATCATAAGGTTAAAAAGAAGCCCACGAAAGTTTTGGAGGATCAAAACAATCCCAAGACTTAAATGGAATGGTTATATGAACTTTATGTTAAAATCTTTGAACACTGATAACATCTTTGGTGGGAAACAGATTCCAAAGGCTCCTCAAGTTTCTAAGGATTATGCCAGTGATGCGTTGGAGGTTAAGCTCATATATGAGATTTCAAAGGCCTTGATGGCTTCTCATGAACTATTTCCCATCGTGGAAATGGAGTCACTGATACCCAAACCAACGAGGTACTTACGGAGGCGGCGATATCAGCGACTCGACGAGGATGCCATCACCGGTGATGGAAGGAAGACCAAGGTTCTAAGGTTGAGAAGAAGGCAGTGGAGGATAAGAGTAGTTCCAAGGTTAACATGGGCTATTAGGTCACCAATAAAGATGTGGACAAAGCTTAAGAACACTTATGAGAAATTTATGTTGAAGTCCATGAAAAGTGATACCATCTTTGGAACTAAGGATCGTGTAGTTTCTAAGGAAAATTATTCTCGTGATGCTTTTGAGGCTAGACTTATATTTGAGATTTCTAAGGCCTTGGTTGCTTCTCATGAATTAAATTCCATGAAATAG

Protein sequence

>Msa1157200

MEMESLLPKQTNNGGIKQYLRRRQHKHLEGSGKKMKIIRLKRSPRKFWRIKTIPRLKWNGYMNFMLKSLNTDNIFGGKQIPKAPQVSKDYASDALEVKLIYEISKALMASHELFPIVEMESLIPKPTRYLRRRRYQRLDEDAITGDGRKTKVLRLRRRQWRIRVVPRLTWAIRSPIKMWTKLKNTYEKFMLKSMKSDTIFGTKDRVVSKENYSRDAFEARLIFEISKALVASHELNSMK*