Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309650 | XP_013463376.1 | 98.661 | 448 | 6 | 0 | 1 | 448 | 1 | 448 | 0.0 | 904 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044710 | Msa0309650 | -0.825193 | 5.356493e-54 | -8.615850e-47 |
| Msa0050720 | Msa0309650 | -0.809579 | 1.764794e-50 | -8.615850e-47 |
| Msa0084680 | Msa0309650 | -0.802555 | 5.308172e-49 | -8.615850e-47 |
| Msa0127440 | Msa0309650 | -0.802785 | 4.756778e-49 | -8.615850e-47 |
| Msa0142420 | Msa0309650 | -0.818737 | 1.677143e-52 | -8.615850e-47 |
| Msa0155610 | Msa0309650 | -0.816999 | 4.138467e-52 | -8.615850e-47 |
| Msa0182930 | Msa0309650 | -0.838736 | 2.409448e-57 | -8.615850e-47 |
| Msa0183560 | Msa0309650 | -0.810207 | 1.293134e-50 | -8.615850e-47 |
| Msa0218530 | Msa0309650 | 0.830095 | 3.560634e-55 | -8.615850e-47 |
| Msa0218650 | Msa0309650 | 0.829340 | 5.438150e-55 | -8.615850e-47 |
| Msa0261250 | Msa0309650 | 0.801403 | 9.155857e-49 | -8.615850e-47 |
| Msa0265580 | Msa0309650 | -0.830354 | 3.079489e-55 | -8.615850e-47 |
| Msa0303440 | Msa0309650 | -0.811050 | 8.498319e-51 | -8.615850e-47 |
| Msa0309650 | Msa0358290 | -0.806668 | 7.356266e-50 | -8.615850e-47 |
| Msa0309650 | Msa0377280 | -0.805857 | 1.090041e-49 | -8.615850e-47 |
| Msa0309650 | Msa0382590 | -0.811725 | 6.065400e-51 | -8.615850e-47 |
| Msa0309650 | Msa0401340 | -0.815881 | 7.364818e-52 | -8.615850e-47 |
| Msa0309650 | Msa0412190 | -0.812721 | 3.675962e-51 | -8.615850e-47 |
| Msa0309650 | Msa0418430 | -0.818254 | 2.157399e-52 | -8.615850e-47 |
| Msa0309650 | Msa0432720 | -0.800898 | 1.160903e-48 | -8.615850e-47 |
| Msa0309650 | Msa0448080 | -0.817795 | 2.740213e-52 | -8.615850e-47 |
| Msa0309650 | Msa0448120 | -0.809608 | 1.739241e-50 | -8.615850e-47 |
| Msa0309650 | Msa0462590 | -0.822695 | 2.064411e-53 | -8.615850e-47 |
| Msa0309650 | Msa0465800 | -0.846127 | 2.639728e-59 | -8.615850e-47 |
| Msa0309650 | Msa0472740 | -0.858407 | 8.416321e-63 | -8.615850e-47 |
| Msa0309650 | Msa0511720 | 0.801261 | 9.785459e-49 | -8.615850e-47 |
| Msa0309650 | Msa0525270 | -0.800171 | 1.633540e-48 | -8.615850e-47 |
| Msa0309650 | Msa0530950 | -0.837785 | 4.235564e-57 | -8.615850e-47 |
| Msa0309650 | Msa0578070 | 0.808403 | 3.151409e-50 | -8.615850e-47 |
| Msa0309650 | Msa0583740 | -0.835523 | 1.597219e-56 | -8.615850e-47 |
| Msa0309650 | Msa0628100 | -0.811205 | 7.866245e-51 | -8.615850e-47 |
| Msa0309650 | Msa0646640 | -0.800556 | 1.363707e-48 | -8.615850e-47 |
| Msa0309650 | Msa0651400 | -0.804533 | 2.064185e-49 | -8.615850e-47 |
| Msa0309650 | Msa0687000 | -0.819550 | 1.095219e-52 | -8.615850e-47 |
| Msa0309650 | Msa0705420 | -0.832361 | 9.878405e-56 | -8.615850e-47 |
| Msa0309650 | Msa0714600 | -0.802707 | 4.938095e-49 | -8.615850e-47 |
| Msa0309650 | Msa0792790 | 0.802403 | 5.705264e-49 | -8.615850e-47 |
| Msa0309650 | Msa0804120 | -0.804773 | 1.839015e-49 | -8.615850e-47 |
| Msa0309650 | Msa0818440 | -0.806745 | 7.085194e-50 | -8.615850e-47 |
| Msa0309650 | Msa0818550 | -0.801146 | 1.033018e-48 | -8.615850e-47 |
| Msa0309650 | Msa0828570 | -0.830404 | 2.993396e-55 | -8.615850e-47 |
| Msa0309650 | Msa0861040 | 0.820403 | 6.988129e-53 | -8.615850e-47 |
| Msa0309650 | Msa1098180 | 0.816919 | 4.314083e-52 | -8.615850e-47 |
| Msa0309650 | Msa1118150 | -0.804923 | 1.710876e-49 | -8.615850e-47 |
| Msa0309650 | Msa1119250 | 0.801389 | 9.215878e-49 | -8.615850e-47 |
| Msa0309650 | Msa1119300 | 0.813545 | 2.424655e-51 | -8.615850e-47 |
| Msa0309650 | Msa1157730 | -0.817393 | 3.375032e-52 | -8.615850e-47 |
| Msa0309650 | Msa1177240 | -0.840773 | 7.104412e-58 | -8.615850e-47 |
| Msa0309650 | Msa1187520 | -0.816277 | 6.007957e-52 | -8.615850e-47 |
| Msa0309650 | Msa1241820 | -0.816781 | 4.634232e-52 | -8.615850e-47 |
| Msa0309650 | Msa1260130 | -0.805151 | 1.533310e-49 | -8.615850e-47 |
| Msa0309650 | Msa1282920 | -0.813559 | 2.407437e-51 | -8.615850e-47 |
| Msa0309650 | Msa1305740 | -0.819888 | 9.165002e-53 | -8.615850e-47 |
| Msa0309650 | Msa1317030 | -0.823497 | 1.341657e-53 | -8.615850e-47 |
| Msa0309650 | Msa1320380 | -0.804042 | 2.611991e-49 | -8.615850e-47 |
| Msa0309650 | Msa1354090 | -0.804178 | 2.446594e-49 | -8.615850e-47 |
| Msa0309650 | Msa1378470 | -0.854597 | 1.107491e-61 | -8.615850e-47 |
| Msa0309650 | Msa1391490 | -0.819710 | 1.006658e-52 | -8.615850e-47 |
| Msa0309650 | Msa1398800 | -0.818742 | 1.672732e-52 | -8.615850e-47 |
| Msa0309650 | Msa1421870 | -0.824522 | 7.710462e-54 | -8.615850e-47 |
| Msa0309650 | Msa1440610 | -0.803222 | 3.863352e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309650 | MtrunA17_Chr2g0297561 | 98.661 | 448 | 6 | 0 | 1 | 448 | 1 | 448 | 0.0 | 904 |
| Msa0309650 | MtrunA17_Chr7g0255441 | 39.053 | 338 | 186 | 11 | 1 | 325 | 1 | 331 | 1.07e-57 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309650 | AT1G10790.1 | 37.658 | 316 | 192 | 4 | 11 | 322 | 19 | 333 | 1.76e-61 | 203 |
| Msa0309650 | AT3G56590.1 | 38.535 | 314 | 181 | 4 | 1 | 304 | 1 | 312 | 3.08e-60 | 204 |
| Msa0309650 | AT3G56590.2 | 33.333 | 414 | 226 | 8 | 1 | 367 | 1 | 411 | 6.99e-52 | 182 |
| Msa0309650 | AT3G10810.2 | 39.175 | 291 | 173 | 3 | 18 | 306 | 24 | 312 | 8.88e-50 | 177 |
| Msa0309650 | AT3G10810.1 | 39.175 | 291 | 173 | 3 | 18 | 306 | 24 | 312 | 8.95e-50 | 177 |
Find 124 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGGCCTGCCAACTTTC+TGG | 0.130670 | 2_4:+4271650 | None:intergenic |
| CTCAAGTACACTGGATTTAT+TGG | 0.142617 | 2_4:+4273626 | None:intergenic |
| ACATTAACAACATCAGTATT+TGG | 0.147911 | 2_4:-4273554 | Msa0309650:CDS |
| CTTTCGTTTCTGTAATCTTT+TGG | 0.184778 | 2_4:-4275988 | Msa0309650:CDS |
| GCTTTGGCAATGGGGAAAAT+TGG | 0.213954 | 2_4:-4276133 | Msa0309650:exon |
| TTTGAGATCTTAAAGTTTCC+TGG | 0.282888 | 2_4:-4273518 | Msa0309650:CDS |
| TTTGAGGAAGAATTGAAGTT+TGG | 0.294679 | 2_4:-4273383 | Msa0309650:CDS |
| CTAGCTTCGAATTTGTGTTT+AGG | 0.304005 | 2_4:+4275959 | None:intergenic |
| CCATGGAGAAATCTTGCTAA+TGG | 0.305591 | 2_4:-4271902 | Msa0309650:CDS |
| CCCTTCTGTGCAGCTTCAGC+AGG | 0.306265 | 2_4:-4271934 | Msa0309650:intron |
| TCTTCTAATCTTTCAATGTA+TGG | 0.309011 | 2_4:+4273863 | None:intergenic |
| GGATTTATTGGAACGTTCAT+TGG | 0.310537 | 2_4:+4273638 | None:intergenic |
| ACCAAAGTGTTGCACCTAAT+TGG | 0.313782 | 2_4:-4273691 | Msa0309650:CDS |
| GGCCGAAAACTACGTTATTA+AGG | 0.314508 | 2_4:+4272494 | None:intergenic |
| GCATGATATGGTGAAATTAA+TGG | 0.316702 | 2_4:+4272373 | None:intergenic |
| GGCTGGAAGTATATGATATA+GGG | 0.321667 | 2_4:+4272230 | None:intergenic |
| GAATAAGAGGGAGCATGATA+TGG | 0.333268 | 2_4:+4272361 | None:intergenic |
| TTAATGTCAGGTTGGTTTGC+TGG | 0.344452 | 2_4:+4273570 | None:intergenic |
| AATTGGTCTGACGTGGTATT+TGG | 0.346861 | 2_4:-4273674 | Msa0309650:CDS |
| TGTTATGATGGTGTTGTTGC+TGG | 0.351596 | 2_4:+4276214 | None:intergenic |
| TGGGGATATAGGAGAATAAG+AGG | 0.354180 | 2_4:+4272348 | None:intergenic |
| TTCCCCATTGCCAAAGCATC+TGG | 0.355407 | 2_4:+4276139 | None:intergenic |
| TGGCTGGAAGTATATGATAT+AGG | 0.362942 | 2_4:+4272229 | None:intergenic |
| CATGGAGAAATCTTGCTAAT+GGG | 0.364439 | 2_4:-4271901 | Msa0309650:CDS |
| TGTAAAGCTTTGGTGGGTTA+AGG | 0.364542 | 2_4:-4271679 | Msa0309650:three_prime_UTR |
| GCTATTTGTTTCAATCTTTG+TGG | 0.376352 | 2_4:+4272553 | None:intergenic |
| GGTTGGTTTGCTGGAGAAAC+AGG | 0.378948 | 2_4:+4273579 | None:intergenic |
| CATTAACAACATCAGTATTT+GGG | 0.381434 | 2_4:-4273553 | Msa0309650:CDS |
| CTTATCCAGGACTTCAGATA+TGG | 0.382361 | 2_4:+4273415 | None:intergenic |
| GAGAGAGATTCCAGATGCTT+TGG | 0.383155 | 2_4:-4276149 | Msa0309650:five_prime_UTR |
| ATTCCAGATGCTTTGGCAAT+GGG | 0.385105 | 2_4:-4276142 | Msa0309650:exon |
| CACACTGCTGGAAACAATCT+TGG | 0.388783 | 2_4:-4272517 | Msa0309650:CDS |
| TTAGCAGTAGCTGGGGATAT+AGG | 0.392947 | 2_4:+4272337 | None:intergenic |
| CTCATGTTCAAGCATCCTTC+AGG | 0.393016 | 2_4:-4273913 | Msa0309650:CDS |
| TGGCTTGTGGATCCTTCATT+AGG | 0.396150 | 2_4:+4271812 | None:intergenic |
| GTTTCAATCTTTGTGGCAAA+AGG | 0.396433 | 2_4:+4272560 | None:intergenic |
| AATACCACGTCAGACCAATT+AGG | 0.396698 | 2_4:+4273677 | None:intergenic |
| TTGGCAAATACCTTCGTGTT+TGG | 0.407914 | 2_4:+4273815 | None:intergenic |
| TCGGCTGCACGTGGCAGATC+AGG | 0.411986 | 2_4:+4272190 | None:intergenic |
| CAAGGTGTCTTAGCAGTAGC+TGG | 0.414350 | 2_4:+4272328 | None:intergenic |
| AGACATTAATTAAAATTTGT+CGG | 0.420063 | 2_4:+4271730 | None:intergenic |
| GCAACCACATTGTAAAGCTT+TGG | 0.422178 | 2_4:-4271689 | Msa0309650:three_prime_UTR |
| TCGGCCAAGTCAGAGAAATC+AGG | 0.429255 | 2_4:-4272477 | Msa0309650:CDS |
| GGGGATGGAGCAGGAGCTGG+TGG | 0.432865 | 2_4:+4272418 | None:intergenic |
| CGATGAAGGTGCACGGTGTT+CGG | 0.433041 | 2_4:-4276068 | Msa0309650:CDS |
| ACCAATTAGGTGCAACACTT+TGG | 0.454232 | 2_4:+4273690 | None:intergenic |
| CAAAATCATCAAACTTATCC+AGG | 0.459186 | 2_4:+4273402 | None:intergenic |
| AGCTTGTCCTGTAGTAGTGC+AGG | 0.459369 | 2_4:-4272608 | Msa0309650:CDS |
| TATGGAATAAGCTGTGAAAC+TGG | 0.468542 | 2_4:+4273881 | None:intergenic |
| AATTAGGTGCAACACTTTGG+TGG | 0.478750 | 2_4:+4273693 | None:intergenic |
| TCATTCCATATCTGAAGTCC+TGG | 0.479722 | 2_4:-4273420 | Msa0309650:CDS |
| CAGGTTATCTTCTTTACTGA+AGG | 0.480171 | 2_4:-4272458 | Msa0309650:CDS |
| TGTGGGGATGGAGCAGGAGC+TGG | 0.480214 | 2_4:+4272415 | None:intergenic |
| AGAAACCCGAGTTGTGTGGC+TGG | 0.494348 | 2_4:+4272213 | None:intergenic |
| TTCTGTGCAGCTTCAGCAGG+TGG | 0.500928 | 2_4:-4271931 | Msa0309650:intron |
| CAACACTTTGGTGGATGGAT+AGG | 0.504344 | 2_4:+4273702 | None:intergenic |
| TCTACAACGCGTTGTTATGA+TGG | 0.506759 | 2_4:+4276202 | None:intergenic |
| ATAAAGACGTTGCCTAATGA+AGG | 0.510402 | 2_4:-4271824 | Msa0309650:three_prime_UTR |
| ATAACCTGATTTCTCTGACT+TGG | 0.513908 | 2_4:+4272473 | None:intergenic |
| ACCACATTGTAAAGCTTTGG+TGG | 0.513956 | 2_4:-4271686 | Msa0309650:three_prime_UTR |
| GATTCCAGATGCTTTGGCAA+TGG | 0.514774 | 2_4:-4276143 | Msa0309650:exon |
| CAGAGTGATCAGTTAACTGT+GGG | 0.517119 | 2_4:+4272398 | None:intergenic |
| ACTGAAGCCTGCACTACTAC+AGG | 0.519585 | 2_4:+4272601 | None:intergenic |
| AGGTGCAACACTTTGGTGGA+TGG | 0.525225 | 2_4:+4273697 | None:intergenic |
| CGTGCAGCCGATGTTTCTCA+TGG | 0.528267 | 2_4:-4272178 | Msa0309650:CDS |
| GTTAACTGTGGGGATGGAGC+AGG | 0.533743 | 2_4:+4272409 | None:intergenic |
| AGATCTTAAAGTTTCCTGGT+GGG | 0.540304 | 2_4:-4273514 | Msa0309650:CDS |
| TCAGCAGGTGGTGATTTCCA+TGG | 0.547414 | 2_4:-4271919 | Msa0309650:CDS |
| ATAAACTTACATGGAGAGGA+TGG | 0.548041 | 2_4:+4272097 | None:intergenic |
| AAGGTGTCTTAGCAGTAGCT+GGG | 0.553473 | 2_4:+4272329 | None:intergenic |
| TGTTCAAGCATCCTTCAGGC+TGG | 0.554060 | 2_4:-4273909 | Msa0309650:CDS |
| CAAACAGTAAAACACACTGC+TGG | 0.555721 | 2_4:-4272529 | Msa0309650:CDS |
| ATACTGATGTTGTTAATGTC+AGG | 0.555783 | 2_4:+4273558 | None:intergenic |
| TGATCAGTTAACTGTGGGGA+TGG | 0.555827 | 2_4:+4272403 | None:intergenic |
| GAATCAGCAGGAGAATAAGC+TGG | 0.558449 | 2_4:+4272253 | None:intergenic |
| GTCAAAGCCAGAAAGTTGGC+AGG | 0.564797 | 2_4:-4271657 | Msa0309650:three_prime_UTR |
| GAGATCTTAAAGTTTCCTGG+TGG | 0.566552 | 2_4:-4273515 | Msa0309650:CDS |
| GAACAGAGGCAAAACGATGA+AGG | 0.566636 | 2_4:-4276082 | Msa0309650:CDS |
| CCACATTGTAAAGCTTTGGT+GGG | 0.569740 | 2_4:-4271685 | Msa0309650:three_prime_UTR |
| ATACTTCCAGCCACACAACT+CGG | 0.570902 | 2_4:-4272219 | Msa0309650:CDS |
| GCTGGAAGTATATGATATAG+GGG | 0.570981 | 2_4:+4272231 | None:intergenic |
| TACTTCCAGCCACACAACTC+GGG | 0.579652 | 2_4:-4272218 | Msa0309650:CDS |
| AATGATGTAATTAAGCATAG+AGG | 0.580743 | 2_4:-4275926 | Msa0309650:intron |
| CACATAGAAACAGACTGCAC+TGG | 0.581225 | 2_4:+4273479 | None:intergenic |
| TGCAGGCTTCAGTCATGCGA+GGG | 0.581545 | 2_4:-4272591 | Msa0309650:CDS |
| TATAGTCCTTGCATGGCTTG+TGG | 0.584678 | 2_4:+4271799 | None:intergenic |
| CACAATGGACGGTGAAGGTG+AGG | 0.584961 | 2_4:+4272288 | None:intergenic |
| ATTAAGCTATAGTCCTTGCA+TGG | 0.586973 | 2_4:+4271792 | None:intergenic |
| TGATGTTGTTAATGTCAGGT+TGG | 0.590920 | 2_4:+4273562 | None:intergenic |
| ATAATATAGTTCTAAATGAG+AGG | 0.592212 | 2_4:+4271634 | None:intergenic |
| TAAGGTCAAAGCCAGAAAGT+TGG | 0.599821 | 2_4:-4271661 | Msa0309650:three_prime_UTR |
| GGTATTACAGTCAACCCACC+AGG | 0.602265 | 2_4:+4273500 | None:intergenic |
| GTGAAGGTGAGGATACTTCA+CGG | 0.604933 | 2_4:+4272299 | None:intergenic |
| CTTGACTCCATGAGAAACAT+CGG | 0.606693 | 2_4:+4272171 | None:intergenic |
| GGGATGGAGCAGGAGCTGGT+GGG | 0.607036 | 2_4:+4272419 | None:intergenic |
| CCCACCAAAGCTTTACAATG+TGG | 0.609037 | 2_4:+4271685 | None:intergenic |
| TATGATATAGGGGAATCAGC+AGG | 0.609066 | 2_4:+4272241 | None:intergenic |
| TTCAGCACACTCAAGTACAC+TGG | 0.610830 | 2_4:+4273617 | None:intergenic |
| TTCTATGTGGCAGATACGCG+AGG | 0.614118 | 2_4:-4273465 | Msa0309650:CDS |
| AAGGATCCACAAGCCATGCA+AGG | 0.618506 | 2_4:-4271805 | Msa0309650:three_prime_UTR |
| ACAGATAAACTTACATGGAG+AGG | 0.624750 | 2_4:+4272093 | None:intergenic |
| GGATGCTCAGTCACAATGGA+CGG | 0.627514 | 2_4:+4272277 | None:intergenic |
| TCAGTCACAATGGACGGTGA+AGG | 0.629292 | 2_4:+4272283 | None:intergenic |
| GATACTTCACGGTCAAAACA+AGG | 0.629571 | 2_4:+4272310 | None:intergenic |
| GGCAAAACGATGAAGGTGCA+CGG | 0.631187 | 2_4:-4276075 | Msa0309650:CDS |
| CAGTGCAGTCTGTTTCTATG+TGG | 0.631558 | 2_4:-4273478 | Msa0309650:CDS |
| TTCCAGATGCTTTGGCAATG+GGG | 0.632353 | 2_4:-4276141 | Msa0309650:exon |
| CCATTAGCAAGATTTCTCCA+TGG | 0.633154 | 2_4:+4271902 | None:intergenic |
| GTGCAGGCTTCAGTCATGCG+AGG | 0.636959 | 2_4:-4272592 | Msa0309650:CDS |
| CAGGAGAAACCCGAGTTGTG+TGG | 0.637145 | 2_4:+4272209 | None:intergenic |
| TGAGAAACATCGGCTGCACG+TGG | 0.641644 | 2_4:+4272181 | None:intergenic |
| TCAGAGTGATCAGTTAACTG+TGG | 0.652727 | 2_4:+4272397 | None:intergenic |
| AGTCAAGCTTCGCCAAGACG+AGG | 0.659244 | 2_4:-4272155 | Msa0309650:CDS |
| TGGAGGATGCTCAGTCACAA+TGG | 0.659309 | 2_4:+4272273 | None:intergenic |
| AGGTGTCTTAGCAGTAGCTG+GGG | 0.661469 | 2_4:+4272330 | None:intergenic |
| TGCACCTAATTGGTCTGACG+TGG | 0.680415 | 2_4:-4273681 | Msa0309650:CDS |
| AATATCTCTGCCAAACACGA+AGG | 0.688962 | 2_4:-4273825 | Msa0309650:intron |
| GGGGATATAGGAGAATAAGA+GGG | 0.701522 | 2_4:+4272349 | None:intergenic |
| TCAGCAGGAGAATAAGCTGG+AGG | 0.707480 | 2_4:+4272256 | None:intergenic |
| GAACGTTCATTGGATCAGAG+AGG | 0.710677 | 2_4:+4273648 | None:intergenic |
| ATGTGCAACAAGAAGAACAG+AGG | 0.711319 | 2_4:-4276096 | Msa0309650:CDS |
| ATTGCATCTGAAGTCTGATG+AGG | 0.712979 | 2_4:-4273360 | Msa0309650:intron |
| GTGCAAATAACAAATGCACG+CGG | 0.750381 | 2_4:-4272640 | Msa0309650:CDS |
| AGAGTGATCAGTTAACTGTG+GGG | 0.756817 | 2_4:+4272399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTATACTGATTA+TGG | - | chr2_4:4271974-4271993 | Msa0309650:intron | 10.0% |
| !!! | ATTTTTAACTTAAAGAATAA+AGG | - | chr2_4:4274523-4274542 | Msa0309650:intron | 10.0% |
| !!! | TTTTTTTTTTGATCAAATTC+AGG | - | chr2_4:4272067-4272086 | Msa0309650:intron | 15.0% |
| !!! | CCTAAAAAATTTAGTTATTT+TGG | + | chr2_4:4273475-4273494 | None:intergenic | 15.0% |
| !!! | CCAAAATAACTAAATTTTTT+AGG | - | chr2_4:4273472-4273491 | Msa0309650:CDS | 15.0% |
| !!! | TGTTATTATTTTGCATTTTT+TGG | - | chr2_4:4274603-4274622 | Msa0309650:intron | 15.0% |
| !!! | GAAATTTAAATTTTAGAAGT+TGG | - | chr2_4:4274909-4274928 | Msa0309650:intron | 15.0% |
| !! | AGACATTAATTAAAATTTGT+CGG | + | chr2_4:4275913-4275932 | None:intergenic | 15.0% |
| !! | AGTGTAAAAATTTCAATTAA+TGG | - | chr2_4:4276136-4276155 | Msa0309650:exon | 15.0% |
| !! | GTGTAAAAATTTCAATTAAT+GGG | - | chr2_4:4276137-4276156 | Msa0309650:exon | 15.0% |
| !! | TGATACTATTTGTCATAATT+AGG | - | chr2_4:4271880-4271899 | Msa0309650:CDS | 20.0% |
| !! | TGATTTCAAAATTCAAAAGT+AGG | - | chr2_4:4272034-4272053 | Msa0309650:intron | 20.0% |
| !! | GATTTCAAAATTCAAAAGTA+GGG | - | chr2_4:4272035-4272054 | Msa0309650:intron | 20.0% |
| !!! | CTATTATAGATTGTTGATTT+CGG | - | chr2_4:4272136-4272155 | Msa0309650:CDS | 20.0% |
| !!! | TATGAGAGTATTATGATTTA+TGG | - | chr2_4:4272581-4272600 | Msa0309650:CDS | 20.0% |
| !! | AAATTTAAATCGTCAATTAG+TGG | - | chr2_4:4272649-4272668 | Msa0309650:CDS | 20.0% |
| !! | AAAAAAGTGAACAATTTACA+AGG | + | chr2_4:4272869-4272888 | None:intergenic | 20.0% |
| !! | ATTGTAATAATAGTTACTGT+TGG | - | chr2_4:4273022-4273041 | Msa0309650:intron | 20.0% |
| !! | TCCATAAATTTAAACTTTGA+AGG | - | chr2_4:4273403-4273422 | Msa0309650:CDS | 20.0% |
| !! | TCCTTCAAAGTTTAAATTTA+TGG | + | chr2_4:4273407-4273426 | None:intergenic | 20.0% |
| !! | TTCATTTGAATTCTTATTGT+TGG | - | chr2_4:4273653-4273672 | Msa0309650:CDS | 20.0% |
| !!! | TATTTTGCAGAAAATATTCA+TGG | - | chr2_4:4274469-4274488 | Msa0309650:intron | 20.0% |
| !! | TAAATAATGAATCTTTCTTG+TGG | + | chr2_4:4274564-4274583 | None:intergenic | 20.0% |
| !!! | TAATGTCTATATTTTCATAC+TGG | - | chr2_4:4275925-4275944 | Msa0309650:intron | 20.0% |
| !!! | ATAATATAGTTCTAAATGAG+AGG | + | chr2_4:4276009-4276028 | None:intergenic | 20.0% |
| !!! | ATCAATTTAAAGCTTCATAT+AGG | + | chr2_4:4276032-4276051 | None:intergenic | 20.0% |
| ! | AATGATGTAATTAAGCATAG+AGG | - | chr2_4:4271714-4271733 | Msa0309650:three_prime_UTR | 25.0% |
| ! | CGAAATCAACAATCTATAAT+AGG | + | chr2_4:4272138-4272157 | None:intergenic | 25.0% |
| ! | TGAAAATAGTATGATAGCAT+CGG | - | chr2_4:4272162-4272181 | Msa0309650:CDS | 25.0% |
| ! | CATATCTCATTAACATGTAA+GGG | + | chr2_4:4272432-4272451 | None:intergenic | 25.0% |
| ! | TAATACTCTCATACAAAGTA+TGG | + | chr2_4:4272574-4272593 | None:intergenic | 25.0% |
| !! | AGAGTATTATGATTTATGGT+TGG | - | chr2_4:4272585-4272604 | Msa0309650:CDS | 25.0% |
| !!! | TGAGAGAGTATTATGATTTA+TGG | - | chr2_4:4272743-4272762 | Msa0309650:intron | 25.0% |
| !!! | TCTTCTAGAGTTGTAAAAAA+AGG | + | chr2_4:4272795-4272814 | None:intergenic | 25.0% |
| !!! | AATTTGTCATTTTTACCTTC+AGG | - | chr2_4:4272934-4272953 | Msa0309650:intron | 25.0% |
| !! | ATCAAACTTTTCTGCATAAA+AGG | + | chr2_4:4273004-4273023 | None:intergenic | 25.0% |
| ! | CTAATAGTTGTAATACTACT+TGG | + | chr2_4:4273074-4273093 | None:intergenic | 25.0% |
| ! | TAAATACAGTTAGAGAATTG+AGG | - | chr2_4:4273348-4273367 | Msa0309650:intron | 25.0% |
| !!! | TATCACTCATAAGTTTGTTA+TGG | - | chr2_4:4273583-4273602 | Msa0309650:CDS | 25.0% |
| ! | TCTTCTAATCTTTCAATGTA+TGG | + | chr2_4:4273780-4273799 | None:intergenic | 25.0% |
| ! | ACATTAACAACATCAGTATT+TGG | - | chr2_4:4274086-4274105 | Msa0309650:intron | 25.0% |
| ! | CATTAACAACATCAGTATTT+GGG | - | chr2_4:4274087-4274106 | Msa0309650:intron | 25.0% |
| ! | CTCAAAATATTAAGTGAAAC+AGG | + | chr2_4:4274319-4274338 | None:intergenic | 25.0% |
| !!! | ATATTTTGAGAACTGCAATT+TGG | - | chr2_4:4274329-4274348 | Msa0309650:intron | 25.0% |
| !!! | TATTTTGAGAACTGCAATTT+GGG | - | chr2_4:4274330-4274349 | Msa0309650:intron | 25.0% |
| !! | ATTAAAACCTAGTTCTCTAT+TGG | - | chr2_4:4274632-4274651 | Msa0309650:intron | 25.0% |
| ! | TTATTAACCAATAGAGAACT+AGG | + | chr2_4:4274642-4274661 | None:intergenic | 25.0% |
| ! | GAAAACAAGAATGTAGAAAA+TGG | + | chr2_4:4274768-4274787 | None:intergenic | 25.0% |
| ! | TCTTAATCAACTCATGATTT+AGG | + | chr2_4:4274853-4274872 | None:intergenic | 25.0% |
| ! | ATTTAAATTTCATTTGCTCG+AGG | + | chr2_4:4274900-4274919 | None:intergenic | 25.0% |
| ! | ACTTTATAAATTCATCGAAC+TGG | - | chr2_4:4275651-4275670 | Msa0309650:intron | 25.0% |
| ! | ACTTGATCAAATACAAAGAA+TGG | + | chr2_4:4276119-4276138 | None:intergenic | 25.0% |
| ! | GAAAAAACTAATCTCTTTGT+TGG | + | chr2_4:4276204-4276223 | None:intergenic | 25.0% |
| !!! | CATTCTCTTTTTCAGTTTAG+CGG | - | chr2_4:4271629-4271648 | Msa0309650:three_prime_UTR | 30.0% |
| ! | CTTTCGTTTCTGTAATCTTT+TGG | - | chr2_4:4271652-4271671 | Msa0309650:three_prime_UTR | 30.0% |
| TCAAAACACGAAATTGAAAG+TGG | + | chr2_4:4271748-4271767 | None:intergenic | 30.0% | |
| TTTATTTCGCTGTATTCGAT+TGG | - | chr2_4:4271825-4271844 | Msa0309650:three_prime_UTR | 30.0% | |
| !! | TTATAGATTGTTGATTTCGG+AGG | - | chr2_4:4272139-4272158 | Msa0309650:CDS | 30.0% |
| GCATATCTCATTAACATGTA+AGG | + | chr2_4:4272433-4272452 | None:intergenic | 30.0% | |
| ATAAACACACCTCAATAAGA+AGG | + | chr2_4:4272463-4272482 | None:intergenic | 30.0% | |
| TTCTTATTGAGGTGTGTTTA+TGG | - | chr2_4:4272462-4272481 | Msa0309650:CDS | 30.0% | |
| TCTTATTGAGGTGTGTTTAT+GGG | - | chr2_4:4272463-4272482 | Msa0309650:CDS | 30.0% | |
| AGATTTAAATCGTCAGTAAG+TGG | - | chr2_4:4272504-4272523 | Msa0309650:CDS | 30.0% | |
| !! | TATGATTTATGGTTGGTAAG+AGG | - | chr2_4:4272592-4272611 | Msa0309650:CDS | 30.0% |
| TACTCTCTCAATACAAAGTA+TGG | + | chr2_4:4272733-4272752 | None:intergenic | 30.0% | |
| ! | AGAGTATTATGATTTATGGC+TGG | - | chr2_4:4272747-4272766 | Msa0309650:intron | 30.0% |
| TGTCTACATTTACCAAAAAG+AGG | + | chr2_4:4272915-4272934 | None:intergenic | 30.0% | |
| TGCTTATATGATTTACCTGA+AGG | + | chr2_4:4272952-4272971 | None:intergenic | 30.0% | |
| AGTTACTGTTGGAAATAGAA+TGG | - | chr2_4:4273033-4273052 | Msa0309650:intron | 30.0% | |
| !! | TTTGCTGTATCTGATCTTTT+AGG | - | chr2_4:4273122-4273141 | Msa0309650:intron | 30.0% |
| CTCAGTAGAATGATACATTT+AGG | + | chr2_4:4273218-4273237 | None:intergenic | 30.0% | |
| AGGATATTTATTCCAAATCC+TGG | - | chr2_4:4273368-4273387 | Msa0309650:CDS | 30.0% | |
| ! | TGCACATTGATATCTTTTAC+TGG | - | chr2_4:4273496-4273515 | Msa0309650:CDS | 30.0% |
| AAAATGTAAGAGAAGAAGCT+TGG | + | chr2_4:4273847-4273866 | None:intergenic | 30.0% | |
| !!! | TCTCTTACATTTTTTTCCTC+AGG | - | chr2_4:4273854-4273873 | Msa0309650:CDS | 30.0% |
| !!! | ATTAGCCACTTTTTATGTCT+GGG | + | chr2_4:4273888-4273907 | None:intergenic | 30.0% |
| !!! | TATTAGCCACTTTTTATGTC+TGG | + | chr2_4:4273889-4273908 | None:intergenic | 30.0% |
| ATACTGATGTTGTTAATGTC+AGG | + | chr2_4:4274085-4274104 | None:intergenic | 30.0% | |
| ! | TTTGAGATCTTAAAGTTTCC+TGG | - | chr2_4:4274122-4274141 | Msa0309650:intron | 30.0% |
| CAAAATCATCAAACTTATCC+AGG | + | chr2_4:4274241-4274260 | None:intergenic | 30.0% | |
| !! | GGATAAGTTTGATGATTTTG+AGG | - | chr2_4:4274241-4274260 | Msa0309650:intron | 30.0% |
| TTTGAGGAAGAATTGAAGTT+TGG | - | chr2_4:4274257-4274276 | Msa0309650:intron | 30.0% | |
| ATTAAGTGAAACAGGTTATG+AGG | + | chr2_4:4274311-4274330 | None:intergenic | 30.0% | |
| !!! | GTTTTGACTTTTGAGTGAAA+TGG | + | chr2_4:4274367-4274386 | None:intergenic | 30.0% |
| !! | AGAAAGGTATTGCAACTTTA+AGG | + | chr2_4:4274389-4274408 | None:intergenic | 30.0% |
| TTGCAGAAAATATTCATGGA+AGG | - | chr2_4:4274473-4274492 | Msa0309650:intron | 30.0% | |
| GAAAATATTCATGGAAGGAA+AGG | - | chr2_4:4274478-4274497 | Msa0309650:intron | 30.0% | |
| AACTAGAAGCTGATAACTAA+TGG | - | chr2_4:4274660-4274679 | Msa0309650:intron | 30.0% | |
| GCTATTTGTTTCAATCTTTG+TGG | + | chr2_4:4275090-4275109 | None:intergenic | 30.0% | |
| GCATGATATGGTGAAATTAA+TGG | + | chr2_4:4275270-4275289 | None:intergenic | 30.0% | |
| !!! | TAACTGAGAAGCCAATTTTT+TGG | + | chr2_4:4275517-4275536 | None:intergenic | 30.0% |
| CTATGACAGATAAACTTACA+TGG | + | chr2_4:4275555-4275574 | None:intergenic | 30.0% | |
| AGGTAATAGAAAGGAAAGAA+GGG | + | chr2_4:4275582-4275601 | None:intergenic | 30.0% | |
| GTTATATCGAGGTAATAGAA+AGG | + | chr2_4:4275591-4275610 | None:intergenic | 30.0% | |
| !! | AAGCTTTAAATTGATCCCAA+AGG | - | chr2_4:4276037-4276056 | Msa0309650:CDS | 30.0% |
| !! | AGCTTTAAATTGATCCCAAA+GGG | - | chr2_4:4276038-4276057 | Msa0309650:CDS | 30.0% |
| CTAGCTTCGAATTTGTGTTT+AGG | + | chr2_4:4271684-4271703 | None:intergenic | 35.0% | |
| TTCAGGTATAACGTGTTAAG+TGG | - | chr2_4:4272084-4272103 | Msa0309650:intron | 35.0% | |
| TCTATAATAGGCACGAATCA+CGG | + | chr2_4:4272126-4272145 | None:intergenic | 35.0% | |
| ATTAGGGCGTGTGATTAAAA+AGG | - | chr2_4:4272194-4272213 | Msa0309650:CDS | 35.0% | |
| TTAGGGCGTGTGATTAAAAA+GGG | - | chr2_4:4272195-4272214 | Msa0309650:CDS | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr2_4:4272295-4272314 | None:intergenic | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr2_4:4272294-4272313 | Msa0309650:CDS | 35.0% |
| GCATACAAACCTTCTTATTG+AGG | - | chr2_4:4272451-4272470 | Msa0309650:CDS | 35.0% | |
| AAGGCAAACAACAATTGCTA+AGG | + | chr2_4:4272699-4272718 | None:intergenic | 35.0% | |
| !! | GCAATTGTTGTTTGCCTTAT+CGG | - | chr2_4:4272701-4272720 | Msa0309650:intron | 35.0% |
| ! | CTAGAAGACTCTTGATGTTT+TGG | - | chr2_4:4272807-4272826 | Msa0309650:intron | 35.0% |
| ! | TTGTCAAACGTTCCTCTTTT+TGG | - | chr2_4:4272900-4272919 | Msa0309650:intron | 35.0% |
| !! | TATCTGTGATGAAGCATTGT+CGG | + | chr2_4:4273303-4273322 | None:intergenic | 35.0% |
| ACATGTATAGTGCAGTACAA+AGG | + | chr2_4:4273551-4273570 | None:intergenic | 35.0% | |
| ACTTATGAGTGATAGTTGCA+CGG | + | chr2_4:4273577-4273596 | None:intergenic | 35.0% | |
| CTTGAACATGAGCTGAAAAT+TGG | + | chr2_4:4273719-4273738 | None:intergenic | 35.0% | |
| TATGGAATAAGCTGTGAAAC+TGG | + | chr2_4:4273762-4273781 | None:intergenic | 35.0% | |
| AAGCTAGTTACTCTTAACAC+AGG | - | chr2_4:4273908-4273927 | Msa0309650:CDS | 35.0% | |
| GGATTTATTGGAACGTTCAT+TGG | + | chr2_4:4274005-4274024 | None:intergenic | 35.0% | |
| CTCAAGTACACTGGATTTAT+TGG | + | chr2_4:4274017-4274036 | None:intergenic | 35.0% | |
| TGATGTTGTTAATGTCAGGT+TGG | + | chr2_4:4274081-4274100 | None:intergenic | 35.0% | |
| AGATCTTAAAGTTTCCTGGT+GGG | - | chr2_4:4274126-4274145 | Msa0309650:intron | 35.0% | |
| !! | GATTTTGAGAGAAGTCAGAA+AGG | + | chr2_4:4274405-4274424 | None:intergenic | 35.0% |
| TAGAAGCTGATAACTAATGG+CGG | - | chr2_4:4274663-4274682 | Msa0309650:intron | 35.0% | |
| ! | TGATTTTCACCCACTCAAAA+AGG | + | chr2_4:4274714-4274733 | None:intergenic | 35.0% |
| ! | TAGGCTATGCTAGTTTGATT+AGG | + | chr2_4:4274834-4274853 | None:intergenic | 35.0% |
| GTTTCAATCTTTGTGGCAAA+AGG | + | chr2_4:4275083-4275102 | None:intergenic | 35.0% | |
| ! | GGCCTTAATAACGTAGTTTT+CGG | - | chr2_4:4275144-4275163 | Msa0309650:intron | 35.0% |
| ATAACCTGATTTCTCTGACT+TGG | + | chr2_4:4275170-4275189 | None:intergenic | 35.0% | |
| CAGGTTATCTTCTTTACTGA+AGG | - | chr2_4:4275182-4275201 | Msa0309650:intron | 35.0% | |
| ! | GCTGGAAGTATATGATATAG+GGG | + | chr2_4:4275412-4275431 | None:intergenic | 35.0% |
| ! | GGCTGGAAGTATATGATATA+GGG | + | chr2_4:4275413-4275432 | None:intergenic | 35.0% |
| ! | TGGCTGGAAGTATATGATAT+AGG | + | chr2_4:4275414-4275433 | None:intergenic | 35.0% |
| ATAAACTTACATGGAGAGGA+TGG | + | chr2_4:4275546-4275565 | None:intergenic | 35.0% | |
| ACAGATAAACTTACATGGAG+AGG | + | chr2_4:4275550-4275569 | None:intergenic | 35.0% | |
| GAGGTAATAGAAAGGAAAGA+AGG | + | chr2_4:4275583-4275602 | None:intergenic | 35.0% | |
| ! | TGTCAGTTCTAGTTATATCG+AGG | + | chr2_4:4275602-4275621 | None:intergenic | 35.0% |
| CATGGAGAAATCTTGCTAAT+GGG | - | chr2_4:4275739-4275758 | Msa0309650:intron | 35.0% | |
| ATAAAGACGTTGCCTAATGA+AGG | - | chr2_4:4275816-4275835 | Msa0309650:intron | 35.0% | |
| ATTAAGCTATAGTCCTTGCA+TGG | + | chr2_4:4275851-4275870 | None:intergenic | 35.0% | |
| ! | GCTTTAAATTGATCCCAAAG+GGG | - | chr2_4:4276039-4276058 | Msa0309650:CDS | 35.0% |
| TCTACAACGCGTTGTTATGA+TGG | + | chr2_4:4271441-4271460 | None:intergenic | 40.0% | |
| ATTCCAGATGCTTTGGCAAT+GGG | - | chr2_4:4271498-4271517 | Msa0309650:three_prime_UTR | 40.0% | |
| ATGTGCAACAAGAAGAACAG+AGG | - | chr2_4:4271544-4271563 | Msa0309650:intron | 40.0% | |
| GCTGTATTCGATTGGATTTG+AGG | - | chr2_4:4271833-4271852 | Msa0309650:three_prime_UTR | 40.0% | |
| ! | GGATTTGAGGTGTGATGAAA+CGG | - | chr2_4:4271846-4271865 | Msa0309650:exon | 40.0% |
| TGTGATTAAAAAGGGCAACC+CGG | - | chr2_4:4272203-4272222 | Msa0309650:CDS | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr2_4:4272269-4272288 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr2_4:4272300-4272319 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr2_4:4272301-4272320 | None:intergenic | 40.0% | |
| TAATCACACGCCCTAATTGA+GGG | + | chr2_4:4272391-4272410 | None:intergenic | 40.0% | |
| !! | AGTCATTGTTGACTTGCTGT+TGG | - | chr2_4:4272533-4272552 | Msa0309650:CDS | 40.0% |
| AACAACAATTGCTAAGGTGC+AGG | + | chr2_4:4272693-4272712 | None:intergenic | 40.0% | |
| AAGTATGGATCTTGCCGATA+AGG | + | chr2_4:4272718-4272737 | None:intergenic | 40.0% | |
| ACTCAGGCATATTCAGAATC+TGG | - | chr2_4:4273248-4273267 | Msa0309650:intron | 40.0% | |
| CTCAGGCATATTCAGAATCT+GGG | - | chr2_4:4273249-4273268 | Msa0309650:intron | 40.0% | |
| !! | ATCTGTGATGAAGCATTGTC+GGG | + | chr2_4:4273302-4273321 | None:intergenic | 40.0% |
| ! | ACTCACAGTTTTCCAGGATT+TGG | + | chr2_4:4273383-4273402 | None:intergenic | 40.0% |
| ! | TATGGAACTCACAGTTTTCC+AGG | + | chr2_4:4273389-4273408 | None:intergenic | 40.0% |
| CAACACAGAAGATTAATCGC+AGG | + | chr2_4:4273628-4273647 | None:intergenic | 40.0% | |
| AATATCTCTGCCAAACACGA+AGG | - | chr2_4:4273815-4273834 | Msa0309650:intron | 40.0% | |
| TTGGCAAATACCTTCGTGTT+TGG | + | chr2_4:4273828-4273847 | None:intergenic | 40.0% | |
| CTCTACCCAGACATAAAAAG+TGG | - | chr2_4:4273880-4273899 | Msa0309650:CDS | 40.0% | |
| CTAGTTACTCTTAACACAGG+TGG | - | chr2_4:4273911-4273930 | Msa0309650:CDS | 40.0% | |
| AATTAGGTGCAACACTTTGG+TGG | + | chr2_4:4273950-4273969 | None:intergenic | 40.0% | |
| !! | ACCAAAGTGTTGCACCTAAT+TGG | - | chr2_4:4273949-4273968 | Msa0309650:intron | 40.0% |
| ACCAATTAGGTGCAACACTT+TGG | + | chr2_4:4273953-4273972 | None:intergenic | 40.0% | |
| AATACCACGTCAGACCAATT+AGG | + | chr2_4:4273966-4273985 | None:intergenic | 40.0% | |
| ! | AATTGGTCTGACGTGGTATT+TGG | - | chr2_4:4273966-4273985 | Msa0309650:intron | 40.0% |
| !! | TTAATGTCAGGTTGGTTTGC+TGG | + | chr2_4:4274073-4274092 | None:intergenic | 40.0% |
| GAGATCTTAAAGTTTCCTGG+TGG | - | chr2_4:4274125-4274144 | Msa0309650:intron | 40.0% | |
| ! | TCATTCCATATCTGAAGTCC+TGG | - | chr2_4:4274220-4274239 | Msa0309650:intron | 40.0% |
| CTTATCCAGGACTTCAGATA+TGG | + | chr2_4:4274228-4274247 | None:intergenic | 40.0% | |
| ! | ATTGCATCTGAAGTCTGATG+AGG | - | chr2_4:4274280-4274299 | Msa0309650:intron | 40.0% |
| AGAAGCTGATAACTAATGGC+GGG | - | chr2_4:4274664-4274683 | Msa0309650:intron | 40.0% | |
| ! | GGGTCTCTGGCAATATTTTA+GGG | - | chr2_4:4274684-4274703 | Msa0309650:intron | 40.0% |
| !! | TTAGGGTGTACCTTTTTGAG+TGG | - | chr2_4:4274701-4274720 | Msa0309650:intron | 40.0% |
| !!! | TAGGGTGTACCTTTTTGAGT+GGG | - | chr2_4:4274702-4274721 | Msa0309650:intron | 40.0% |
| GTAGAAAATGGCAATGCATC+TGG | + | chr2_4:4274756-4274775 | None:intergenic | 40.0% | |
| TGCACATACACATTCTGCAA+TGG | + | chr2_4:4274985-4275004 | None:intergenic | 40.0% | |
| GTGCAAATAACAAATGCACG+CGG | - | chr2_4:4275000-4275019 | Msa0309650:intron | 40.0% | |
| CAAACAGTAAAACACACTGC+TGG | - | chr2_4:4275111-4275130 | Msa0309650:intron | 40.0% | |
| GGCCGAAAACTACGTTATTA+AGG | + | chr2_4:4275149-4275168 | None:intergenic | 40.0% | |
| AGAGTGATCAGTTAACTGTG+GGG | + | chr2_4:4275244-4275263 | None:intergenic | 40.0% | |
| CAGAGTGATCAGTTAACTGT+GGG | + | chr2_4:4275245-4275264 | None:intergenic | 40.0% | |
| TCAGAGTGATCAGTTAACTG+TGG | + | chr2_4:4275246-4275265 | None:intergenic | 40.0% | |
| ! | GAATAAGAGGGAGCATGATA+TGG | + | chr2_4:4275282-4275301 | None:intergenic | 40.0% |
| GGGGATATAGGAGAATAAGA+GGG | + | chr2_4:4275294-4275313 | None:intergenic | 40.0% | |
| TGGGGATATAGGAGAATAAG+AGG | + | chr2_4:4275295-4275314 | None:intergenic | 40.0% | |
| GATACTTCACGGTCAAAACA+AGG | + | chr2_4:4275333-4275352 | None:intergenic | 40.0% | |
| TATGATATAGGGGAATCAGC+AGG | + | chr2_4:4275402-4275421 | None:intergenic | 40.0% | |
| CTTGACTCCATGAGAAACAT+CGG | + | chr2_4:4275472-4275491 | None:intergenic | 40.0% | |
| CGAGGAGAGATCCAAAAAAT+TGG | - | chr2_4:4275503-4275522 | Msa0309650:intron | 40.0% | |
| CCATTAGCAAGATTTCTCCA+TGG | + | chr2_4:4275741-4275760 | None:intergenic | 40.0% | |
| CCATGGAGAAATCTTGCTAA+TGG | - | chr2_4:4275738-4275757 | Msa0309650:intron | 40.0% | |
| ! | CAAAAGTTTTGCGCAGACAA+AGG | - | chr2_4:4275878-4275897 | Msa0309650:intron | 40.0% |
| GCAACCACATTGTAAAGCTT+TGG | - | chr2_4:4275951-4275970 | Msa0309650:CDS | 40.0% | |
| ! | ACCACATTGTAAAGCTTTGG+TGG | - | chr2_4:4275954-4275973 | Msa0309650:CDS | 40.0% |
| ! | CCACATTGTAAAGCTTTGGT+GGG | - | chr2_4:4275955-4275974 | Msa0309650:CDS | 40.0% |
| !! | TGTAAAGCTTTGGTGGGTTA+AGG | - | chr2_4:4275961-4275980 | Msa0309650:CDS | 40.0% |
| TAAGGTCAAAGCCAGAAAGT+TGG | - | chr2_4:4275979-4275998 | Msa0309650:CDS | 40.0% | |
| ! | GTTTGTTAGTTGACCCCTTT+GGG | + | chr2_4:4276055-4276074 | None:intergenic | 40.0% |
| ! | TGTTTGTTAGTTGACCCCTT+TGG | + | chr2_4:4276056-4276075 | None:intergenic | 40.0% |
| ! | GCATGATCTGAAGCAAAATC+AGG | - | chr2_4:4276076-4276095 | Msa0309650:CDS | 40.0% |
| GAGAGAGATTCCAGATGCTT+TGG | - | chr2_4:4271491-4271510 | Msa0309650:three_prime_UTR | 45.0% | |
| GATTCCAGATGCTTTGGCAA+TGG | - | chr2_4:4271497-4271516 | Msa0309650:three_prime_UTR | 45.0% | |
| TTCCAGATGCTTTGGCAATG+GGG | - | chr2_4:4271499-4271518 | Msa0309650:three_prime_UTR | 45.0% | |
| GCTTTGGCAATGGGGAAAAT+TGG | - | chr2_4:4271507-4271526 | Msa0309650:three_prime_UTR | 45.0% | |
| GAACAGAGGCAAAACGATGA+AGG | - | chr2_4:4271558-4271577 | Msa0309650:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr2_4:4272270-4272289 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr2_4:4272273-4272292 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr2_4:4272305-4272324 | Msa0309650:CDS | 45.0% |
| GTTGTTGTCATGTGACCGTA+AGG | + | chr2_4:4272345-4272364 | None:intergenic | 45.0% | |
| CCAAGGTTACCCCTCAATTA+GGG | - | chr2_4:4272378-4272397 | Msa0309650:CDS | 45.0% | |
| AATCACACGCCCTAATTGAG+GGG | + | chr2_4:4272390-4272409 | None:intergenic | 45.0% | |
| GTAATCACACGCCCTAATTG+AGG | + | chr2_4:4272392-4272411 | None:intergenic | 45.0% | |
| !! | TGACTTGCTGTTGGACTCTT+CGG | - | chr2_4:4272542-4272561 | Msa0309650:CDS | 45.0% |
| ACTGAGTGTTCTACTCACTC+AGG | - | chr2_4:4273232-4273251 | Msa0309650:intron | 45.0% | |
| CATGAGCTGAAAATTGGTCG+AGG | + | chr2_4:4273713-4273732 | None:intergenic | 45.0% | |
| CTCATGTTCAAGCATCCTTC+AGG | - | chr2_4:4273727-4273746 | Msa0309650:intron | 45.0% | |
| !!! | AACTGGTTTTTCCAGCCTGA+AGG | + | chr2_4:4273745-4273764 | None:intergenic | 45.0% |
| ! | CAACACTTTGGTGGATGGAT+AGG | + | chr2_4:4273941-4273960 | None:intergenic | 45.0% |
| GAACGTTCATTGGATCAGAG+AGG | + | chr2_4:4273995-4274014 | None:intergenic | 45.0% | |
| TTCAGCACACTCAAGTACAC+TGG | + | chr2_4:4274026-4274045 | None:intergenic | 45.0% | |
| CACATAGAAACAGACTGCAC+TGG | + | chr2_4:4274164-4274183 | None:intergenic | 45.0% | |
| !! | CAGTGCAGTCTGTTTCTATG+TGG | - | chr2_4:4274162-4274181 | Msa0309650:intron | 45.0% |
| ! | CGGGTCTCTGGCAATATTTT+AGG | - | chr2_4:4274683-4274702 | Msa0309650:intron | 45.0% |
| CACACTGCTGGAAACAATCT+TGG | - | chr2_4:4275123-4275142 | Msa0309650:intron | 45.0% | |
| TGATCAGTTAACTGTGGGGA+TGG | + | chr2_4:4275240-4275259 | None:intergenic | 45.0% | |
| TTAGCAGTAGCTGGGGATAT+AGG | + | chr2_4:4275306-4275325 | None:intergenic | 45.0% | |
| ! | AAGGTGTCTTAGCAGTAGCT+GGG | + | chr2_4:4275314-4275333 | None:intergenic | 45.0% |
| GTGAAGGTGAGGATACTTCA+CGG | + | chr2_4:4275344-4275363 | None:intergenic | 45.0% | |
| GAATCAGCAGGAGAATAAGC+TGG | + | chr2_4:4275390-4275409 | None:intergenic | 45.0% | |
| ATACTTCCAGCCACACAACT+CGG | - | chr2_4:4275421-4275440 | Msa0309650:intron | 45.0% | |
| ! | TTTTGGATCTCTCCTCGTCT+TGG | + | chr2_4:4275500-4275519 | None:intergenic | 45.0% |
| ! | TGGCTTGTGGATCCTTCATT+AGG | + | chr2_4:4275831-4275850 | None:intergenic | 45.0% |
| TATAGTCCTTGCATGGCTTG+TGG | + | chr2_4:4275844-4275863 | None:intergenic | 45.0% | |
| CCCACCAAAGCTTTACAATG+TGG | + | chr2_4:4275958-4275977 | None:intergenic | 45.0% | |
| ! | TTCCCCATTGCCAAAGCATC+TGG | + | chr2_4:4271504-4271523 | None:intergenic | 50.0% |
| ! | GGCAAAACGATGAAGGTGCA+CGG | - | chr2_4:4271565-4271584 | Msa0309650:intron | 50.0% |
| ! | AGCATCGGATGCGCGTAATT+AGG | - | chr2_4:4272177-4272196 | Msa0309650:CDS | 50.0% |
| GCATCGGATGCGCGTAATTA+GGG | - | chr2_4:4272178-4272197 | Msa0309650:CDS | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | - | chr2_4:4272327-4272346 | Msa0309650:CDS | 50.0% | |
| TCATGTGACCGTAAGGTCAC+GGG | + | chr2_4:4272338-4272357 | None:intergenic | 50.0% | |
| GTCATGTGACCGTAAGGTCA+CGG | + | chr2_4:4272339-4272358 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr2_4:4272361-4272380 | Msa0309650:CDS | 50.0% | |
| GCCAAGGTTACCCCTCAATT+AGG | - | chr2_4:4272377-4272396 | Msa0309650:CDS | 50.0% | |
| CCCTAATTGAGGGGTAACCT+TGG | + | chr2_4:4272381-4272400 | None:intergenic | 50.0% | |
| ! | GTAAGAGGAGCGTGCAAAAC+TGG | - | chr2_4:4272607-4272626 | Msa0309650:CDS | 50.0% |
| TGTTCAAGCATCCTTCAGGC+TGG | - | chr2_4:4273731-4273750 | Msa0309650:intron | 50.0% | |
| AGGTGCAACACTTTGGTGGA+TGG | + | chr2_4:4273946-4273965 | None:intergenic | 50.0% | |
| ! | TGCACCTAATTGGTCTGACG+TGG | - | chr2_4:4273959-4273978 | Msa0309650:intron | 50.0% |
| !! | GGTTGGTTTGCTGGAGAAAC+AGG | + | chr2_4:4274064-4274083 | None:intergenic | 50.0% |
| GGTATTACAGTCAACCCACC+AGG | + | chr2_4:4274143-4274162 | None:intergenic | 50.0% | |
| TTCTATGTGGCAGATACGCG+AGG | - | chr2_4:4274175-4274194 | Msa0309650:intron | 50.0% | |
| !! | GATAACTAATGGCGGGTCTC+TGG | - | chr2_4:4274671-4274690 | Msa0309650:intron | 50.0% |
| AGCTTGTCCTGTAGTAGTGC+AGG | - | chr2_4:4275032-4275051 | Msa0309650:intron | 50.0% | |
| ACTGAAGCCTGCACTACTAC+AGG | + | chr2_4:4275042-4275061 | None:intergenic | 50.0% | |
| TCGGCCAAGTCAGAGAAATC+AGG | - | chr2_4:4275163-4275182 | Msa0309650:intron | 50.0% | |
| AGGTGTCTTAGCAGTAGCTG+GGG | + | chr2_4:4275313-4275332 | None:intergenic | 50.0% | |
| ! | CAAGGTGTCTTAGCAGTAGC+TGG | + | chr2_4:4275315-4275334 | None:intergenic | 50.0% |
| TCAGTCACAATGGACGGTGA+AGG | + | chr2_4:4275360-4275379 | None:intergenic | 50.0% | |
| GGATGCTCAGTCACAATGGA+CGG | + | chr2_4:4275366-4275385 | None:intergenic | 50.0% | |
| TGGAGGATGCTCAGTCACAA+TGG | + | chr2_4:4275370-4275389 | None:intergenic | 50.0% | |
| TCAGCAGGAGAATAAGCTGG+AGG | + | chr2_4:4275387-4275406 | None:intergenic | 50.0% | |
| TACTTCCAGCCACACAACTC+GGG | - | chr2_4:4275422-4275441 | Msa0309650:intron | 50.0% | |
| TCAGCAGGTGGTGATTTCCA+TGG | - | chr2_4:4275721-4275740 | Msa0309650:intron | 50.0% | |
| AAGGATCCACAAGCCATGCA+AGG | - | chr2_4:4275835-4275854 | Msa0309650:intron | 50.0% | |
| GTCAAAGCCAGAAAGTTGGC+AGG | - | chr2_4:4275983-4276002 | Msa0309650:CDS | 50.0% | |
| ! | CGATGAAGGTGCACGGTGTT+CGG | - | chr2_4:4271572-4271591 | Msa0309650:intron | 55.0% |
| ACTGAAGCTCCCGCATATGC+AGG | - | chr2_4:4272229-4272248 | Msa0309650:CDS | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | - | chr2_4:4272230-4272249 | Msa0309650:CDS | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr2_4:4272326-4272345 | None:intergenic | 55.0% | |
| TGTCTGGGTAGAGAGACCTG+AGG | + | chr2_4:4273873-4273892 | None:intergenic | 55.0% | |
| TGCAGGCTTCAGTCATGCGA+GGG | - | chr2_4:4275049-4275068 | Msa0309650:intron | 55.0% | |
| GTTAACTGTGGGGATGGAGC+AGG | + | chr2_4:4275234-4275253 | None:intergenic | 55.0% | |
| CACAATGGACGGTGAAGGTG+AGG | + | chr2_4:4275355-4275374 | None:intergenic | 55.0% | |
| AGAAACCCGAGTTGTGTGGC+TGG | + | chr2_4:4275430-4275449 | None:intergenic | 55.0% | |
| CAGGAGAAACCCGAGTTGTG+TGG | + | chr2_4:4275434-4275453 | None:intergenic | 55.0% | |
| ! | TGAGAAACATCGGCTGCACG+TGG | + | chr2_4:4275462-4275481 | None:intergenic | 55.0% |
| CGTGCAGCCGATGTTTCTCA+TGG | - | chr2_4:4275462-4275481 | Msa0309650:intron | 55.0% | |
| AGTCAAGCTTCGCCAAGACG+AGG | - | chr2_4:4275485-4275504 | Msa0309650:intron | 55.0% | |
| CCTGCTGAAGCTGCACAGAA+GGG | + | chr2_4:4275709-4275728 | None:intergenic | 55.0% | |
| ACCTGCTGAAGCTGCACAGA+AGG | + | chr2_4:4275710-4275729 | None:intergenic | 55.0% | |
| TTCTGTGCAGCTTCAGCAGG+TGG | - | chr2_4:4275709-4275728 | Msa0309650:intron | 55.0% | |
| TGAGAGGCCTGCCAACTTTC+TGG | + | chr2_4:4275993-4276012 | None:intergenic | 55.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr2_4:4272225-4272244 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr2_4:4272241-4272260 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr2_4:4272242-4272261 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr2_4:4272241-4272260 | Msa0309650:CDS | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr2_4:4272242-4272261 | Msa0309650:CDS | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr2_4:4272257-4272276 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr2_4:4272372-4272391 | None:intergenic | 60.0% | |
| GTGCAGGCTTCAGTCATGCG+AGG | - | chr2_4:4275048-4275067 | Msa0309650:intron | 60.0% | |
| CCCTTCTGTGCAGCTTCAGC+AGG | - | chr2_4:4275706-4275725 | Msa0309650:intron | 60.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr2_4:4272224-4272243 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr2_4:4272235-4272254 | Msa0309650:CDS | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr2_4:4272236-4272255 | Msa0309650:CDS | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr2_4:4272240-4272259 | Msa0309650:CDS | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr2_4:4272255-4272274 | Msa0309650:CDS | 65.0% | |
| GGGATGGAGCAGGAGCTGGT+GGG | + | chr2_4:4275224-4275243 | None:intergenic | 65.0% | |
| TGTGGGGATGGAGCAGGAGC+TGG | + | chr2_4:4275228-4275247 | None:intergenic | 65.0% | |
| TCGGCTGCACGTGGCAGATC+AGG | + | chr2_4:4275453-4275472 | None:intergenic | 65.0% | |
| GGGGATGGAGCAGGAGCTGG+TGG | + | chr2_4:4275225-4275244 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 4271427 | 4276235 | 4271427 | ID=Msa0309650;Name=Msa0309650 |
| chr2_4 | mRNA | 4271427 | 4276235 | 4271427 | ID=Msa0309650-mRNA-1;Parent=Msa0309650;Name=Msa0309650-mRNA-1;_AED=0.16;_eAED=0.16;_QI=89|1|1|1|0.8|0.66|6|339|448 |
| chr2_4 | exon | 4271427 | 4271530 | 4271427 | ID=Msa0309650-mRNA-1:exon:1451;Parent=Msa0309650-mRNA-1 |
| chr2_4 | exon | 4271629 | 4271943 | 4271629 | ID=Msa0309650-mRNA-1:exon:1450;Parent=Msa0309650-mRNA-1 |
| chr2_4 | exon | 4272107 | 4272671 | 4272107 | ID=Msa0309650-mRNA-1:exon:1449;Parent=Msa0309650-mRNA-1 |
| chr2_4 | exon | 4273361 | 4273732 | 4273361 | ID=Msa0309650-mRNA-1:exon:1448;Parent=Msa0309650-mRNA-1 |
| chr2_4 | exon | 4273826 | 4273935 | 4273826 | ID=Msa0309650-mRNA-1:exon:1447;Parent=Msa0309650-mRNA-1 |
| chr2_4 | exon | 4275927 | 4276235 | 4275927 | ID=Msa0309650-mRNA-1:exon:1446;Parent=Msa0309650-mRNA-1 |
| chr2_4 | five_prime_UTR | 4276147 | 4276235 | 4276147 | ID=Msa0309650-mRNA-1:five_prime_utr;Parent=Msa0309650-mRNA-1 |
| chr2_4 | CDS | 4275927 | 4276146 | 4275927 | ID=Msa0309650-mRNA-1:cds;Parent=Msa0309650-mRNA-1 |
| chr2_4 | CDS | 4273826 | 4273935 | 4273826 | ID=Msa0309650-mRNA-1:cds;Parent=Msa0309650-mRNA-1 |
| chr2_4 | CDS | 4273361 | 4273732 | 4273361 | ID=Msa0309650-mRNA-1:cds;Parent=Msa0309650-mRNA-1 |
| chr2_4 | CDS | 4272107 | 4272671 | 4272107 | ID=Msa0309650-mRNA-1:cds;Parent=Msa0309650-mRNA-1 |
| chr2_4 | CDS | 4271864 | 4271943 | 4271864 | ID=Msa0309650-mRNA-1:cds;Parent=Msa0309650-mRNA-1 |
| chr2_4 | three_prime_UTR | 4271629 | 4271863 | 4271629 | ID=Msa0309650-mRNA-1:three_prime_utr;Parent=Msa0309650-mRNA-1 |
| chr2_4 | three_prime_UTR | 4271427 | 4271530 | 4271427 | ID=Msa0309650-mRNA-1:three_prime_utr;Parent=Msa0309650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
