AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651400 MtrunA17_Chr4g0043781 97.600 125 3 0 1 125 1 125 1.43e-88 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651400 AT1G31170.1 77.600 125 28 0 1 125 1 125 8.78e-59 177
Msa0651400 AT1G31170.2 77.600 125 28 0 1 125 1 125 8.78e-59 177
Msa0651400 AT1G31170.5 77.686 121 27 0 1 121 1 121 7.50e-56 171
Msa0651400 AT1G31170.3 76.000 125 28 1 1 125 1 123 3.24e-55 168
Msa0651400 AT1G31170.4 77.686 121 27 0 1 121 1 121 9.73e-55 170

Find 44 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAACTCCTCAAACTATT+TGG 0.234336 4_3:+58793576 None:intergenic
TAAAATTTAGGGGCTCTTTC+TGG 0.234797 4_3:-58793448 Msa0651400:intron
GGGGCTCTTTCTGGTGGTTC+TGG 0.256526 4_3:-58793439 Msa0651400:CDS
ATGGATAGTATTCGTGAAAT+TGG 0.274920 4_3:-58793313 Msa0651400:CDS
AGAATCTTGGCCGTTGAAAA+TGG 0.303540 4_3:-58793750 Msa0651400:five_prime_UTR
AAACAAAGTTCAAGAACTTA+TGG 0.307753 4_3:-58793332 Msa0651400:CDS
CTTTCTGGTGGTTCTGGAAG+TGG 0.365172 4_3:-58793433 Msa0651400:CDS
GAGGTTGATGGAAACTATTA+TGG 0.381219 4_3:-58792250 Msa0651400:intron
ATTGATGTGCTTGAGGTTGA+TGG 0.382760 4_3:-58792262 Msa0651400:CDS
GTTGTGGTTATAGGTTTCTC+TGG 0.391419 4_3:-58792058 Msa0651400:intron
TGGTGTGGGTCCAGTGATAC+TGG 0.431666 4_3:-58793410 Msa0651400:CDS
GTGGCACAAAAGAGACTCTA+AGG 0.431947 4_3:-58791973 Msa0651400:intron
AAATGAGTGATGCACCATTA+GGG 0.432228 4_3:+58793535 None:intergenic
GGTTCTGGAAGTGGTGGTGT+GGG 0.445849 4_3:-58793424 Msa0651400:CDS
CCACCATACGCTGCAAAATA+CGG 0.452823 4_3:-58791997 Msa0651400:CDS
TCATCTATAATATGATCAAA+CGG 0.453068 4_3:+58791789 None:intergenic
TGCAGGTTCCAAATAGTTTG+AGG 0.463009 4_3:-58793584 Msa0651400:CDS
TGGTTCTGGAAGTGGTGGTG+TGG 0.464993 4_3:-58793425 Msa0651400:CDS
TTTGATCTAGTCCTCATCAT+AGG 0.468493 4_3:+58793361 None:intergenic
TCTGCTTCATCCAACCCTAA+TGG 0.481086 4_3:-58793549 Msa0651400:intron
CATCTATAATATGATCAAAC+GGG 0.488401 4_3:+58791790 None:intergenic
TTCCTCTTGATAAGATAAGA+AGG 0.501249 4_3:-58793384 Msa0651400:CDS
AGAGGAAGTTCCAGTATCAC+TGG 0.512026 4_3:+58793400 None:intergenic
GGGAACCACTATATGCTTTG+AGG 0.512626 4_3:+58791810 None:intergenic
TACGAGGCTCACCAACGACT+TGG 0.517478 4_3:-58792025 Msa0651400:CDS
TTGCTCCTCAAAGCATATAG+TGG 0.523233 4_3:-58791815 Msa0651400:three_prime_UTR
TAGGTTTCTCTGGCTGTCAC+CGG 0.528971 4_3:-58792048 Msa0651400:CDS
GTCGTTGGTGAGCCTCGTAC+CGG 0.547692 4_3:+58792029 None:intergenic
AATTTAGGGGCTCTTTCTGG+TGG 0.550422 4_3:-58793445 Msa0651400:intron
GGCCTTCTTATCTTATCAAG+AGG 0.554502 4_3:+58793382 None:intergenic
TCTGGTGGTTCTGGAAGTGG+TGG 0.571088 4_3:-58793430 Msa0651400:CDS
CTCTGGCTGTCACCGGTACG+AGG 0.572203 4_3:-58792041 Msa0651400:CDS
CATGCGCTAAAATATGTGAC+AGG 0.580028 4_3:-58791850 Msa0651400:exon
AATGTTTCTTCTTAGTGACA+AGG 0.605571 4_3:-58791733 Msa0651400:three_prime_UTR
ATGTTTCTTCTTAGTGACAA+GGG 0.607569 4_3:-58791732 Msa0651400:three_prime_UTR
TCTTGGCCGTTGAAAATGGT+GGG 0.610452 4_3:-58793746 Msa0651400:five_prime_UTR
ATCTTGGCCGTTGAAAATGG+TGG 0.614510 4_3:-58793747 Msa0651400:five_prime_UTR
TGGTGGGGAGTCCAAGTCGT+TGG 0.622695 4_3:+58792014 None:intergenic
AGATAAGAAGGCCTATGATG+AGG 0.627844 4_3:-58793372 Msa0651400:CDS
GAGTGATGCACCATTAGGGT+TGG 0.637639 4_3:+58793539 None:intergenic
GATGCAGATTGATGTGCTTG+AGG 0.652589 4_3:-58792269 Msa0651400:intron
CTATTATCACATGACAAGCA+TGG 0.657565 4_3:+58793723 None:intergenic
AATAAATAAATAAAACCACA+AGG 0.692841 4_3:-58793655 Msa0651400:five_prime_UTR
ATACGCTGCAAAATACGGCG+TGG 0.718853 4_3:-58791992 Msa0651400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATGTTAAAATTTAG+GGG - chr4_3:58791903-58791922 Msa0651400:intron 10.0%
!! CAAAATATATTTATACTTTA+TGG - chr4_3:58792119-58792138 Msa0651400:intron 10.0%
!! TTAATTATGTTAAAATTTAG+GGG - chr4_3:58791903-58791922 Msa0651400:intron 10.0%
!! CAAAATATATTTATACTTTA+TGG - chr4_3:58792119-58792138 Msa0651400:intron 10.0%
!! AATAAATAAATAAAACCACA+AGG - chr4_3:58791706-58791725 Msa0651400:three_prime_UTR 15.0%
!!! CTTTATTAGATTTTTTTCTT+AGG - chr4_3:58792230-58792249 Msa0651400:intron 15.0%
!!! TTATTTTAACAAGAAATAGT+AGG + chr4_3:58793017-58793036 None:intergenic 15.0%
!!! ATTATGAATTGTATTCTTTT+TGG + chr4_3:58793676-58793695 None:intergenic 15.0%
!! AAAAATCATGTATTAGAAAT+TGG + chr4_3:58793699-58793718 None:intergenic 15.0%
!! AATAAATAAATAAAACCACA+AGG - chr4_3:58791706-58791725 Msa0651400:three_prime_UTR 15.0%
!!! CTTTATTAGATTTTTTTCTT+AGG - chr4_3:58792230-58792249 Msa0651400:intron 15.0%
!!! TTATTTTAACAAGAAATAGT+AGG + chr4_3:58793017-58793036 None:intergenic 15.0%
!!! ATTATGAATTGTATTCTTTT+TGG + chr4_3:58793676-58793695 None:intergenic 15.0%
!! AAAAATCATGTATTAGAAAT+TGG + chr4_3:58793699-58793718 None:intergenic 15.0%
!! TTAATATCAAAGAAAATGAC+AGG + chr4_3:58792423-58792442 None:intergenic 20.0%
!! ATATTAATCTTTGTAGCAAA+GGG - chr4_3:58792436-58792455 Msa0651400:intron 20.0%
!!! TTACATTTTCTTTGATGAAT+TGG - chr4_3:58792501-58792520 Msa0651400:intron 20.0%
!! AATCTTGAAAATAAGTTAGT+CGG + chr4_3:58793245-58793264 None:intergenic 20.0%
!!! ATATCGATTATATTATGTTG+TGG - chr4_3:58793287-58793306 Msa0651400:intron 20.0%
!! TTATATTATGTTGTGGTTAT+AGG - chr4_3:58793294-58793313 Msa0651400:intron 20.0%
!! TCATCTATAATATGATCAAA+CGG + chr4_3:58793575-58793594 None:intergenic 20.0%
!! TTAATATCAAAGAAAATGAC+AGG + chr4_3:58792423-58792442 None:intergenic 20.0%
!! ATATTAATCTTTGTAGCAAA+GGG - chr4_3:58792436-58792455 Msa0651400:intron 20.0%
!!! TTACATTTTCTTTGATGAAT+TGG - chr4_3:58792501-58792520 Msa0651400:intron 20.0%
!! AATCTTGAAAATAAGTTAGT+CGG + chr4_3:58793245-58793264 None:intergenic 20.0%
!!! ATATCGATTATATTATGTTG+TGG - chr4_3:58793287-58793306 Msa0651400:intron 20.0%
!! TTATATTATGTTGTGGTTAT+AGG - chr4_3:58793294-58793313 Msa0651400:intron 20.0%
!! TCATCTATAATATGATCAAA+CGG + chr4_3:58793575-58793594 None:intergenic 20.0%
!! GATTCACATTCTTAATTTTC+TGG - chr4_3:58791674-58791693 Msa0651400:three_prime_UTR 25.0%
!!! CAAGATATTTTTTTTCCTTG+TGG + chr4_3:58791724-58791743 None:intergenic 25.0%
! AAAAAAAATATCTTGCAGAG+AGG - chr4_3:58791729-58791748 Msa0651400:three_prime_UTR 25.0%
! AAACAAAGTTCAAGAACTTA+TGG - chr4_3:58792029-58792048 Msa0651400:CDS 25.0%
! TGTTGTATATAAGTATACCA+TGG - chr4_3:58792160-58792179 Msa0651400:intron 25.0%
! AAGTATACCATGGATTTAAA+AGG - chr4_3:58792170-58792189 Msa0651400:intron 25.0%
! AATGACTATTAGAACCTTAA+GGG + chr4_3:58792200-58792219 None:intergenic 25.0%
! AAATGACTATTAGAACCTTA+AGG + chr4_3:58792201-58792220 None:intergenic 25.0%
! TTATGGAAAATGGTGATATT+TGG - chr4_3:58792298-58792317 Msa0651400:intron 25.0%
! TATGGAAAATGGTGATATTT+GGG - chr4_3:58792299-58792318 Msa0651400:intron 25.0%
! GATATTAATCTTTGTAGCAA+AGG - chr4_3:58792435-58792454 Msa0651400:intron 25.0%
! TCTATATAATTACTCTGTGA+TGG - chr4_3:58792838-58792857 Msa0651400:intron 25.0%
! CTATATAATTACTCTGTGAT+GGG - chr4_3:58792839-58792858 Msa0651400:intron 25.0%
! TGTTGAATACTATTGAGATT+AGG - chr4_3:58792880-58792899 Msa0651400:intron 25.0%
! GTTGAATACTATTGAGATTA+GGG - chr4_3:58792881-58792900 Msa0651400:intron 25.0%
! TTGAATACTATTGAGATTAG+GGG - chr4_3:58792882-58792901 Msa0651400:intron 25.0%
!! TTTGTTAAGGGATATGTTTT+TGG - chr4_3:58792924-58792943 Msa0651400:intron 25.0%
! TTCATCAAAATTATCTTGCT+CGG - chr4_3:58793045-58793064 Msa0651400:intron 25.0%
! TAAACAATCAAAACAGAACT+AGG - chr4_3:58793210-58793229 Msa0651400:intron 25.0%
!! CTAAGGTTAGTTAATATGTT+TGG - chr4_3:58793405-58793424 Msa0651400:CDS 25.0%
! CATCTATAATATGATCAAAC+GGG + chr4_3:58793574-58793593 None:intergenic 25.0%
!! GATTCACATTCTTAATTTTC+TGG - chr4_3:58791674-58791693 Msa0651400:three_prime_UTR 25.0%
!!! CAAGATATTTTTTTTCCTTG+TGG + chr4_3:58791724-58791743 None:intergenic 25.0%
! AAAAAAAATATCTTGCAGAG+AGG - chr4_3:58791729-58791748 Msa0651400:three_prime_UTR 25.0%
! AAACAAAGTTCAAGAACTTA+TGG - chr4_3:58792029-58792048 Msa0651400:CDS 25.0%
! TGTTGTATATAAGTATACCA+TGG - chr4_3:58792160-58792179 Msa0651400:intron 25.0%
! AAGTATACCATGGATTTAAA+AGG - chr4_3:58792170-58792189 Msa0651400:intron 25.0%
! AATGACTATTAGAACCTTAA+GGG + chr4_3:58792200-58792219 None:intergenic 25.0%
! AAATGACTATTAGAACCTTA+AGG + chr4_3:58792201-58792220 None:intergenic 25.0%
! TTATGGAAAATGGTGATATT+TGG - chr4_3:58792298-58792317 Msa0651400:intron 25.0%
! TATGGAAAATGGTGATATTT+GGG - chr4_3:58792299-58792318 Msa0651400:intron 25.0%
! GATATTAATCTTTGTAGCAA+AGG - chr4_3:58792435-58792454 Msa0651400:intron 25.0%
! TCTATATAATTACTCTGTGA+TGG - chr4_3:58792838-58792857 Msa0651400:intron 25.0%
! CTATATAATTACTCTGTGAT+GGG - chr4_3:58792839-58792858 Msa0651400:intron 25.0%
! TGTTGAATACTATTGAGATT+AGG - chr4_3:58792880-58792899 Msa0651400:intron 25.0%
! GTTGAATACTATTGAGATTA+GGG - chr4_3:58792881-58792900 Msa0651400:intron 25.0%
! TTGAATACTATTGAGATTAG+GGG - chr4_3:58792882-58792901 Msa0651400:intron 25.0%
!! TTTGTTAAGGGATATGTTTT+TGG - chr4_3:58792924-58792943 Msa0651400:intron 25.0%
! TTCATCAAAATTATCTTGCT+CGG - chr4_3:58793045-58793064 Msa0651400:intron 25.0%
! TAAACAATCAAAACAGAACT+AGG - chr4_3:58793210-58793229 Msa0651400:intron 25.0%
!! CTAAGGTTAGTTAATATGTT+TGG - chr4_3:58793405-58793424 Msa0651400:CDS 25.0%
! CATCTATAATATGATCAAAC+GGG + chr4_3:58793574-58793593 None:intergenic 25.0%
TTCCTCTTGATAAGATAAGA+AGG - chr4_3:58791977-58791996 Msa0651400:CDS 30.0%
ATGGATAGTATTCGTGAAAT+TGG - chr4_3:58792048-58792067 Msa0651400:CDS 30.0%
ATGACTATTAGAACCTTAAG+GGG + chr4_3:58792199-58792218 None:intergenic 30.0%
TCACATACAGTTATGGAAAA+TGG - chr4_3:58792288-58792307 Msa0651400:intron 30.0%
AGACTTAGAGAAAATGGTAA+AGG + chr4_3:58792548-58792567 None:intergenic 30.0%
! TACCATTTTCTCTAAGTCTT+AGG - chr4_3:58792549-58792568 Msa0651400:intron 30.0%
AACCTAAGACTTAGAGAAAA+TGG + chr4_3:58792554-58792573 None:intergenic 30.0%
ATAGGAATTGTTGACACATA+GGG + chr4_3:58792583-58792602 None:intergenic 30.0%
TTCAGATCAGAACAATGTAA+TGG + chr4_3:58792724-58792743 None:intergenic 30.0%
TATAGAACATACAGTGAGAA+TGG + chr4_3:58792817-58792836 None:intergenic 30.0%
TCTCAATAGTATTCAACAGT+GGG + chr4_3:58792878-58792897 None:intergenic 30.0%
ATCTCAATAGTATTCAACAG+TGG + chr4_3:58792879-58792898 None:intergenic 30.0%
TGAATACTATTGAGATTAGG+GGG - chr4_3:58792883-58792902 Msa0651400:intron 30.0%
! ACTTATGACTCTGTTTGTTA+AGG - chr4_3:58792911-58792930 Msa0651400:intron 30.0%
! CTTATGACTCTGTTTGTTAA+GGG - chr4_3:58792912-58792931 Msa0651400:intron 30.0%
! GATTTTCTTGCATTTTGTGT+TGG - chr4_3:58792977-58792996 Msa0651400:intron 30.0%
! ATGGTATGTACTTTTCTGAA+TGG - chr4_3:58793130-58793149 Msa0651400:intron 30.0%
ATTGTTTATAGCGATAAGCA+CGG + chr4_3:58793198-58793217 None:intergenic 30.0%
! CTAACTACAAATGAAAGCAT+TGG - chr4_3:58793428-58793447 Msa0651400:CDS 30.0%
AATGTTTCTTCTTAGTGACA+AGG - chr4_3:58793628-58793647 Msa0651400:five_prime_UTR 30.0%
ATGTTTCTTCTTAGTGACAA+GGG - chr4_3:58793629-58793648 Msa0651400:five_prime_UTR 30.0%
TTCCTCTTGATAAGATAAGA+AGG - chr4_3:58791977-58791996 Msa0651400:CDS 30.0%
ATGGATAGTATTCGTGAAAT+TGG - chr4_3:58792048-58792067 Msa0651400:CDS 30.0%
ATGACTATTAGAACCTTAAG+GGG + chr4_3:58792199-58792218 None:intergenic 30.0%
TCACATACAGTTATGGAAAA+TGG - chr4_3:58792288-58792307 Msa0651400:intron 30.0%
AGACTTAGAGAAAATGGTAA+AGG + chr4_3:58792548-58792567 None:intergenic 30.0%
! TACCATTTTCTCTAAGTCTT+AGG - chr4_3:58792549-58792568 Msa0651400:intron 30.0%
AACCTAAGACTTAGAGAAAA+TGG + chr4_3:58792554-58792573 None:intergenic 30.0%
ATAGGAATTGTTGACACATA+GGG + chr4_3:58792583-58792602 None:intergenic 30.0%
TTCAGATCAGAACAATGTAA+TGG + chr4_3:58792724-58792743 None:intergenic 30.0%
TATAGAACATACAGTGAGAA+TGG + chr4_3:58792817-58792836 None:intergenic 30.0%
TCTCAATAGTATTCAACAGT+GGG + chr4_3:58792878-58792897 None:intergenic 30.0%
ATCTCAATAGTATTCAACAG+TGG + chr4_3:58792879-58792898 None:intergenic 30.0%
TGAATACTATTGAGATTAGG+GGG - chr4_3:58792883-58792902 Msa0651400:intron 30.0%
! ACTTATGACTCTGTTTGTTA+AGG - chr4_3:58792911-58792930 Msa0651400:intron 30.0%
! CTTATGACTCTGTTTGTTAA+GGG - chr4_3:58792912-58792931 Msa0651400:intron 30.0%
! GATTTTCTTGCATTTTGTGT+TGG - chr4_3:58792977-58792996 Msa0651400:intron 30.0%
! ATGGTATGTACTTTTCTGAA+TGG - chr4_3:58793130-58793149 Msa0651400:intron 30.0%
ATTGTTTATAGCGATAAGCA+CGG + chr4_3:58793198-58793217 None:intergenic 30.0%
! CTAACTACAAATGAAAGCAT+TGG - chr4_3:58793428-58793447 Msa0651400:CDS 30.0%
AATGTTTCTTCTTAGTGACA+AGG - chr4_3:58793628-58793647 Msa0651400:five_prime_UTR 30.0%
ATGTTTCTTCTTAGTGACAA+GGG - chr4_3:58793629-58793648 Msa0651400:five_prime_UTR 30.0%
CTATTATCACATGACAAGCA+TGG + chr4_3:58791641-58791660 None:intergenic 35.0%
TGCAGAGAGGAAGAAAAAAA+TGG - chr4_3:58791742-58791761 Msa0651400:three_prime_UTR 35.0%
! AATGGCAAATTTTGTTCTGC+AGG - chr4_3:58791760-58791779 Msa0651400:three_prime_UTR 35.0%
GTGAAACTCCTCAAACTATT+TGG + chr4_3:58791788-58791807 None:intergenic 35.0%
AAATGAGTGATGCACCATTA+GGG + chr4_3:58791829-58791848 None:intergenic 35.0%
AAAATGAGTGATGCACCATT+AGG + chr4_3:58791830-58791849 None:intergenic 35.0%
TAAAATTTAGGGGCTCTTTC+TGG - chr4_3:58791913-58791932 Msa0651400:intron 35.0%
TTTGATCTAGTCCTCATCAT+AGG + chr4_3:58792003-58792022 None:intergenic 35.0%
AAGAGAGAGTAAGTGATTAC+AGG + chr4_3:58792084-58792103 None:intergenic 35.0%
ATTTAAAAGGAAGCCCCTTA+AGG - chr4_3:58792183-58792202 Msa0651400:intron 35.0%
TGTCAAGTCACATACAGTTA+TGG - chr4_3:58792281-58792300 Msa0651400:intron 35.0%
TAACCACAAGTGTGAGTATT+CGG - chr4_3:58792342-58792361 Msa0651400:intron 35.0%
TTAATCTTTGTAGCAAAGGG+TGG - chr4_3:58792439-58792458 Msa0651400:intron 35.0%
TAATCTTTGTAGCAAAGGGT+GGG - chr4_3:58792440-58792459 Msa0651400:intron 35.0%
GGTCTTCTGATCTACATAAA+AGG + chr4_3:58792527-58792546 None:intergenic 35.0%
CATAGGAATTGTTGACACAT+AGG + chr4_3:58792584-58792603 None:intergenic 35.0%
TGTGTCAACAATTCCTATGT+TGG - chr4_3:58792585-58792604 Msa0651400:intron 35.0%
GTGTCAACAATTCCTATGTT+GGG - chr4_3:58792586-58792605 Msa0651400:intron 35.0%
ACATTGTTCTGATCTGAAAG+TGG - chr4_3:58792726-58792745 Msa0651400:intron 35.0%
CATTGTTCTGATCTGAAAGT+GGG - chr4_3:58792727-58792746 Msa0651400:intron 35.0%
ATTGTTCTGATCTGAAAGTG+GGG - chr4_3:58792728-58792747 Msa0651400:intron 35.0%
TGTGTGCATGCAATCAAAAT+TGG - chr4_3:58792758-58792777 Msa0651400:intron 35.0%
! AATTGGTCTGTAGTTAGAGA+TGG - chr4_3:58792775-58792794 Msa0651400:intron 35.0%
!! GAGGTTGATGGAAACTATTA+TGG - chr4_3:58793111-58793130 Msa0651400:intron 35.0%
TTTCAAGATTCTGCTTACAC+TGG - chr4_3:58793255-58793274 Msa0651400:intron 35.0%
ATATTCGTTTCTCATCGTGT+AGG - chr4_3:58793483-58793502 Msa0651400:intron 35.0%
CTATTATCACATGACAAGCA+TGG + chr4_3:58791641-58791660 None:intergenic 35.0%
TGCAGAGAGGAAGAAAAAAA+TGG - chr4_3:58791742-58791761 Msa0651400:three_prime_UTR 35.0%
! AATGGCAAATTTTGTTCTGC+AGG - chr4_3:58791760-58791779 Msa0651400:three_prime_UTR 35.0%
GTGAAACTCCTCAAACTATT+TGG + chr4_3:58791788-58791807 None:intergenic 35.0%
AAATGAGTGATGCACCATTA+GGG + chr4_3:58791829-58791848 None:intergenic 35.0%
AAAATGAGTGATGCACCATT+AGG + chr4_3:58791830-58791849 None:intergenic 35.0%
TAAAATTTAGGGGCTCTTTC+TGG - chr4_3:58791913-58791932 Msa0651400:intron 35.0%
TTTGATCTAGTCCTCATCAT+AGG + chr4_3:58792003-58792022 None:intergenic 35.0%
AAGAGAGAGTAAGTGATTAC+AGG + chr4_3:58792084-58792103 None:intergenic 35.0%
ATTTAAAAGGAAGCCCCTTA+AGG - chr4_3:58792183-58792202 Msa0651400:intron 35.0%
TGTCAAGTCACATACAGTTA+TGG - chr4_3:58792281-58792300 Msa0651400:intron 35.0%
TAACCACAAGTGTGAGTATT+CGG - chr4_3:58792342-58792361 Msa0651400:intron 35.0%
TTAATCTTTGTAGCAAAGGG+TGG - chr4_3:58792439-58792458 Msa0651400:intron 35.0%
TAATCTTTGTAGCAAAGGGT+GGG - chr4_3:58792440-58792459 Msa0651400:intron 35.0%
GGTCTTCTGATCTACATAAA+AGG + chr4_3:58792527-58792546 None:intergenic 35.0%
CATAGGAATTGTTGACACAT+AGG + chr4_3:58792584-58792603 None:intergenic 35.0%
TGTGTCAACAATTCCTATGT+TGG - chr4_3:58792585-58792604 Msa0651400:intron 35.0%
GTGTCAACAATTCCTATGTT+GGG - chr4_3:58792586-58792605 Msa0651400:intron 35.0%
ACATTGTTCTGATCTGAAAG+TGG - chr4_3:58792726-58792745 Msa0651400:intron 35.0%
CATTGTTCTGATCTGAAAGT+GGG - chr4_3:58792727-58792746 Msa0651400:intron 35.0%
ATTGTTCTGATCTGAAAGTG+GGG - chr4_3:58792728-58792747 Msa0651400:intron 35.0%
TGTGTGCATGCAATCAAAAT+TGG - chr4_3:58792758-58792777 Msa0651400:intron 35.0%
! AATTGGTCTGTAGTTAGAGA+TGG - chr4_3:58792775-58792794 Msa0651400:intron 35.0%
!! GAGGTTGATGGAAACTATTA+TGG - chr4_3:58793111-58793130 Msa0651400:intron 35.0%
TTTCAAGATTCTGCTTACAC+TGG - chr4_3:58793255-58793274 Msa0651400:intron 35.0%
ATATTCGTTTCTCATCGTGT+AGG - chr4_3:58793483-58793502 Msa0651400:intron 35.0%
AGAATCTTGGCCGTTGAAAA+TGG - chr4_3:58791611-58791630 Msa0651400:three_prime_UTR 40.0%
TGCAGGTTCCAAATAGTTTG+AGG - chr4_3:58791777-58791796 Msa0651400:three_prime_UTR 40.0%
GGCCTTCTTATCTTATCAAG+AGG + chr4_3:58791982-58792001 None:intergenic 40.0%
AGATAAGAAGGCCTATGATG+AGG - chr4_3:58791989-58792008 Msa0651400:CDS 40.0%
! AGTATGGATTGACCCAACAT+AGG + chr4_3:58792601-58792620 None:intergenic 40.0%
GGTGAATTGAAGCTAGAGTA+TGG + chr4_3:58792617-58792636 None:intergenic 40.0%
ATTGATGTGCTTGAGGTTGA+TGG - chr4_3:58793099-58793118 Msa0651400:intron 40.0%
GTTGTGGTTATAGGTTTCTC+TGG - chr4_3:58793303-58793322 Msa0651400:CDS 40.0%
CATGCGCTAAAATATGTGAC+AGG - chr4_3:58793511-58793530 Msa0651400:intron 40.0%
TTGCTCCTCAAAGCATATAG+TGG - chr4_3:58793546-58793565 Msa0651400:intron 40.0%
AGAATCTTGGCCGTTGAAAA+TGG - chr4_3:58791611-58791630 Msa0651400:three_prime_UTR 40.0%
TGCAGGTTCCAAATAGTTTG+AGG - chr4_3:58791777-58791796 Msa0651400:three_prime_UTR 40.0%
GGCCTTCTTATCTTATCAAG+AGG + chr4_3:58791982-58792001 None:intergenic 40.0%
AGATAAGAAGGCCTATGATG+AGG - chr4_3:58791989-58792008 Msa0651400:CDS 40.0%
! AGTATGGATTGACCCAACAT+AGG + chr4_3:58792601-58792620 None:intergenic 40.0%
GGTGAATTGAAGCTAGAGTA+TGG + chr4_3:58792617-58792636 None:intergenic 40.0%
ATTGATGTGCTTGAGGTTGA+TGG - chr4_3:58793099-58793118 Msa0651400:intron 40.0%
GTTGTGGTTATAGGTTTCTC+TGG - chr4_3:58793303-58793322 Msa0651400:CDS 40.0%
CATGCGCTAAAATATGTGAC+AGG - chr4_3:58793511-58793530 Msa0651400:intron 40.0%
TTGCTCCTCAAAGCATATAG+TGG - chr4_3:58793546-58793565 Msa0651400:intron 40.0%
ATCTTGGCCGTTGAAAATGG+TGG - chr4_3:58791614-58791633 Msa0651400:three_prime_UTR 45.0%
TCTTGGCCGTTGAAAATGGT+GGG - chr4_3:58791615-58791634 Msa0651400:three_prime_UTR 45.0%
TCTGCTTCATCCAACCCTAA+TGG - chr4_3:58791812-58791831 Msa0651400:three_prime_UTR 45.0%
AATTTAGGGGCTCTTTCTGG+TGG - chr4_3:58791916-58791935 Msa0651400:intron 45.0%
AGAGGAAGTTCCAGTATCAC+TGG + chr4_3:58791964-58791983 None:intergenic 45.0%
! GGGGCTTCCTTTTAAATCCA+TGG + chr4_3:58792180-58792199 None:intergenic 45.0%
CAACCGAATACTCACACTTG+TGG + chr4_3:58792348-58792367 None:intergenic 45.0%
CACAAGTGTGAGTATTCGGT+TGG - chr4_3:58792346-58792365 Msa0651400:intron 45.0%
GCACGGACACTTGTGATTAA+AGG + chr4_3:58792388-58792407 None:intergenic 45.0%
AAGTGTCCGTGCTACATAGT+TGG - chr4_3:58792396-58792415 Msa0651400:intron 45.0%
ACAGGTCCAACTATGTAGCA+CGG + chr4_3:58792405-58792424 None:intergenic 45.0%
GATGCAGATTGATGTGCTTG+AGG - chr4_3:58793092-58793111 Msa0651400:intron 45.0%
! GTATTTTGCAGCGTATGGTG+GGG + chr4_3:58793365-58793384 None:intergenic 45.0%
! CGTATTTTGCAGCGTATGGT+GGG + chr4_3:58793366-58793385 None:intergenic 45.0%
CCACCATACGCTGCAAAATA+CGG - chr4_3:58793364-58793383 Msa0651400:CDS 45.0%
GTGGCACAAAAGAGACTCTA+AGG - chr4_3:58793388-58793407 Msa0651400:CDS 45.0%
GGGAACCACTATATGCTTTG+AGG + chr4_3:58793554-58793573 None:intergenic 45.0%
ATCTTGGCCGTTGAAAATGG+TGG - chr4_3:58791614-58791633 Msa0651400:three_prime_UTR 45.0%
TCTTGGCCGTTGAAAATGGT+GGG - chr4_3:58791615-58791634 Msa0651400:three_prime_UTR 45.0%
TCTGCTTCATCCAACCCTAA+TGG - chr4_3:58791812-58791831 Msa0651400:three_prime_UTR 45.0%
AATTTAGGGGCTCTTTCTGG+TGG - chr4_3:58791916-58791935 Msa0651400:intron 45.0%
AGAGGAAGTTCCAGTATCAC+TGG + chr4_3:58791964-58791983 None:intergenic 45.0%
! GGGGCTTCCTTTTAAATCCA+TGG + chr4_3:58792180-58792199 None:intergenic 45.0%
CAACCGAATACTCACACTTG+TGG + chr4_3:58792348-58792367 None:intergenic 45.0%
CACAAGTGTGAGTATTCGGT+TGG - chr4_3:58792346-58792365 Msa0651400:intron 45.0%
GCACGGACACTTGTGATTAA+AGG + chr4_3:58792388-58792407 None:intergenic 45.0%
AAGTGTCCGTGCTACATAGT+TGG - chr4_3:58792396-58792415 Msa0651400:intron 45.0%
ACAGGTCCAACTATGTAGCA+CGG + chr4_3:58792405-58792424 None:intergenic 45.0%
GATGCAGATTGATGTGCTTG+AGG - chr4_3:58793092-58793111 Msa0651400:intron 45.0%
! GTATTTTGCAGCGTATGGTG+GGG + chr4_3:58793365-58793384 None:intergenic 45.0%
! CGTATTTTGCAGCGTATGGT+GGG + chr4_3:58793366-58793385 None:intergenic 45.0%
CCACCATACGCTGCAAAATA+CGG - chr4_3:58793364-58793383 Msa0651400:CDS 45.0%
GTGGCACAAAAGAGACTCTA+AGG - chr4_3:58793388-58793407 Msa0651400:CDS 45.0%
GGGAACCACTATATGCTTTG+AGG + chr4_3:58793554-58793573 None:intergenic 45.0%
!! TATTAATTATGTTAAAATTT+AGG - chr4_3:58791901-58791920 Msa0651400:intron 5.0%
!! ATTAATTATGTTAAAATTTA+GGG - chr4_3:58791902-58791921 Msa0651400:intron 5.0%
!!! TTCTTATTTTTTTTTTTTTT+TGG + chr4_3:58792676-58792695 None:intergenic 5.0%
!! TATTAATTATGTTAAAATTT+AGG - chr4_3:58791901-58791920 Msa0651400:intron 5.0%
!! ATTAATTATGTTAAAATTTA+GGG - chr4_3:58791902-58791921 Msa0651400:intron 5.0%
!!! TTCTTATTTTTTTTTTTTTT+TGG + chr4_3:58792676-58792695 None:intergenic 5.0%
! GCATGGCCCACCATTTTCAA+CGG + chr4_3:58791624-58791643 None:intergenic 50.0%
GAGTGATGCACCATTAGGGT+TGG + chr4_3:58791825-58791844 None:intergenic 50.0%
!! CTTTCTGGTGGTTCTGGAAG+TGG - chr4_3:58791928-58791947 Msa0651400:intron 50.0%
TAGGTTTCTCTGGCTGTCAC+CGG - chr4_3:58793313-58793332 Msa0651400:CDS 50.0%
! CCGTATTTTGCAGCGTATGG+TGG + chr4_3:58793367-58793386 None:intergenic 50.0%
! ACGCCGTATTTTGCAGCGTA+TGG + chr4_3:58793370-58793389 None:intergenic 50.0%
ATACGCTGCAAAATACGGCG+TGG - chr4_3:58793369-58793388 Msa0651400:CDS 50.0%
! GCATGGCCCACCATTTTCAA+CGG + chr4_3:58791624-58791643 None:intergenic 50.0%
GAGTGATGCACCATTAGGGT+TGG + chr4_3:58791825-58791844 None:intergenic 50.0%
!! CTTTCTGGTGGTTCTGGAAG+TGG - chr4_3:58791928-58791947 Msa0651400:intron 50.0%
TAGGTTTCTCTGGCTGTCAC+CGG - chr4_3:58793313-58793332 Msa0651400:CDS 50.0%
! CCGTATTTTGCAGCGTATGG+TGG + chr4_3:58793367-58793386 None:intergenic 50.0%
! ACGCCGTATTTTGCAGCGTA+TGG + chr4_3:58793370-58793389 None:intergenic 50.0%
ATACGCTGCAAAATACGGCG+TGG - chr4_3:58793369-58793388 Msa0651400:CDS 50.0%
!! TCTGGTGGTTCTGGAAGTGG+TGG - chr4_3:58791931-58791950 Msa0651400:intron 55.0%
!! TGGTTCTGGAAGTGGTGGTG+TGG - chr4_3:58791936-58791955 Msa0651400:intron 55.0%
!! GGTTCTGGAAGTGGTGGTGT+GGG - chr4_3:58791937-58791956 Msa0651400:intron 55.0%
TGGTGTGGGTCCAGTGATAC+TGG - chr4_3:58791951-58791970 Msa0651400:intron 55.0%
TAGCTTCAATTCACCCGCGC+TGG - chr4_3:58792622-58792641 Msa0651400:intron 55.0%
TACGAGGCTCACCAACGACT+TGG - chr4_3:58793336-58793355 Msa0651400:CDS 55.0%
!! TCTGGTGGTTCTGGAAGTGG+TGG - chr4_3:58791931-58791950 Msa0651400:intron 55.0%
!! TGGTTCTGGAAGTGGTGGTG+TGG - chr4_3:58791936-58791955 Msa0651400:intron 55.0%
!! GGTTCTGGAAGTGGTGGTGT+GGG - chr4_3:58791937-58791956 Msa0651400:intron 55.0%
TGGTGTGGGTCCAGTGATAC+TGG - chr4_3:58791951-58791970 Msa0651400:intron 55.0%
TAGCTTCAATTCACCCGCGC+TGG - chr4_3:58792622-58792641 Msa0651400:intron 55.0%
TACGAGGCTCACCAACGACT+TGG - chr4_3:58793336-58793355 Msa0651400:CDS 55.0%
! GGGGCTCTTTCTGGTGGTTC+TGG - chr4_3:58791922-58791941 Msa0651400:intron 60.0%
CTTCAATTCACCCGCGCTGG+TGG - chr4_3:58792625-58792644 Msa0651400:intron 60.0%
! AATTCACCCGCGCTGGTGGA+CGG - chr4_3:58792629-58792648 Msa0651400:intron 60.0%
! GTCGTTGGTGAGCCTCGTAC+CGG + chr4_3:58793335-58793354 None:intergenic 60.0%
TGGTGGGGAGTCCAAGTCGT+TGG + chr4_3:58793350-58793369 None:intergenic 60.0%
! GGGGCTCTTTCTGGTGGTTC+TGG - chr4_3:58791922-58791941 Msa0651400:intron 60.0%
CTTCAATTCACCCGCGCTGG+TGG - chr4_3:58792625-58792644 Msa0651400:intron 60.0%
! AATTCACCCGCGCTGGTGGA+CGG - chr4_3:58792629-58792648 Msa0651400:intron 60.0%
! GTCGTTGGTGAGCCTCGTAC+CGG + chr4_3:58793335-58793354 None:intergenic 60.0%
TGGTGGGGAGTCCAAGTCGT+TGG + chr4_3:58793350-58793369 None:intergenic 60.0%
AAGACCACCGTCCACCAGCG+CGG + chr4_3:58792639-58792658 None:intergenic 65.0%
CTCTGGCTGTCACCGGTACG+AGG - chr4_3:58793320-58793339 Msa0651400:CDS 65.0%
AAGACCACCGTCCACCAGCG+CGG + chr4_3:58792639-58792658 None:intergenic 65.0%
CTCTGGCTGTCACCGGTACG+AGG - chr4_3:58793320-58793339 Msa0651400:CDS 65.0%
AGACCACCGTCCACCAGCGC+GGG + chr4_3:58792638-58792657 None:intergenic 70.0%
AGACCACCGTCCACCAGCGC+GGG + chr4_3:58792638-58792657 None:intergenic 70.0%
! TCACCCGCGCTGGTGGACGG+TGG - chr4_3:58792632-58792651 Msa0651400:intron 75.0%
! TCACCCGCGCTGGTGGACGG+TGG - chr4_3:58792632-58792651 Msa0651400:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58791604 58793779 58791604 ID=Msa0651400;Name=Msa0651400
chr4_3 mRNA 58791604 58793779 58791604 ID=Msa0651400-mRNA-1;Parent=Msa0651400;Name=Msa0651400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=157|1|1|1|1|1|5|259|125
chr4_3 exon 58791604 58791878 58791604 ID=Msa0651400-mRNA-1:exon:15670;Parent=Msa0651400-mRNA-1
chr4_3 exon 58791974 58792067 58791974 ID=Msa0651400-mRNA-1:exon:15669;Parent=Msa0651400-mRNA-1
chr4_3 exon 58792251 58792284 58792251 ID=Msa0651400-mRNA-1:exon:15668;Parent=Msa0651400-mRNA-1
chr4_3 exon 58793300 58793460 58793300 ID=Msa0651400-mRNA-1:exon:15667;Parent=Msa0651400-mRNA-1
chr4_3 exon 58793550 58793779 58793550 ID=Msa0651400-mRNA-1:exon:15666;Parent=Msa0651400-mRNA-1
chr4_3 five_prime_UTR 58793623 58793779 58793623 ID=Msa0651400-mRNA-1:five_prime_utr;Parent=Msa0651400-mRNA-1
chr4_3 CDS 58793550 58793622 58793550 ID=Msa0651400-mRNA-1:cds;Parent=Msa0651400-mRNA-1
chr4_3 CDS 58793300 58793460 58793300 ID=Msa0651400-mRNA-1:cds;Parent=Msa0651400-mRNA-1
chr4_3 CDS 58792251 58792284 58792251 ID=Msa0651400-mRNA-1:cds;Parent=Msa0651400-mRNA-1
chr4_3 CDS 58791974 58792067 58791974 ID=Msa0651400-mRNA-1:cds;Parent=Msa0651400-mRNA-1
chr4_3 CDS 58791863 58791878 58791863 ID=Msa0651400-mRNA-1:cds;Parent=Msa0651400-mRNA-1
chr4_3 three_prime_UTR 58791604 58791862 58791604 ID=Msa0651400-mRNA-1:three_prime_utr;Parent=Msa0651400-mRNA-1
Gene Sequence

>Msa0651400

ATGGCAAATTTTGTTCTGCAGGTTCCAAATAGTTTGAGGAGTTTCACTGTGTCTGCTTCATCCAACCCTAATGGGGCTCTTTCTGGTGGTTCTGGAAGTGGTGGTGTGGGTCCAGTGATACTGGAACTTCCTCTTGATAAGATAAGAAGGCCTATGATGAGGACTAGATCAAATGATCAAAACAAAGTTCAAGAACTTATGGATAGTATTCGTGAAATTGGTCTTCAAGTGCCTATTGATGTGCTTGAGGTTGATGGAAACTATTATGGTTTCTCTGGCTGTCACCGGTACGAGGCTCACCAACGACTTGGACTCCCCACCATACGCTGCAAAATACGGCGTGGCACAAAAGAGACTCTAAGGCATCACATGCGCTAA

Protein sequence

>Msa0651400

MANFVLQVPNSLRSFTVSASSNPNGALSGGSGSGGVGPVILELPLDKIRRPMMRTRSNDQNKVQELMDSIREIGLQVPIDVLEVDGNYYGFSGCHRYEAHQRLGLPTIRCKIRRGTKETLRHHMR*