AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382390 MtrunA17_Chr3g0137061 97.172 495 14 0 1 495 1 495 0.0 980
Msa0382390 MtrunA17_Chr1g0149941 63.985 522 154 7 1 495 46 560 0.0 545
Msa0382390 MtrunA17_Chr2g0283691 32.124 386 231 6 110 495 86 440 7.72e-42 154
Msa0382390 MtrunA17_Chr8g0377151 31.290 310 192 8 95 394 411 709 1.53e-29 122
Msa0382390 MtrunA17_Chr4g0044411 30.094 319 207 7 79 394 342 647 1.51e-26 113
Msa0382390 MtrunA17_Chr4g0031431 31.488 289 178 8 108 391 351 624 1.61e-26 113
Msa0382390 MtrunA17_Chr5g0435041 32.721 272 166 6 128 394 38 297 2.19e-26 110
Msa0382390 MtrunA17_Chr5g0429231 34.799 273 161 5 128 394 52 313 7.33e-25 105
Msa0382390 MtrunA17_Chr1g0152561 28.814 295 196 6 110 402 61 343 1.08e-24 105
Msa0382390 MtrunA17_Chr1g0183781 30.137 292 188 7 107 394 434 713 6.84e-24 105
Msa0382390 MtrunA17_Chr3g0106931 31.834 289 180 7 109 394 552 826 1.24e-23 104
Msa0382390 MtrunA17_Chr7g0237931 30.526 285 186 5 107 391 331 603 2.04e-23 103
Msa0382390 MtrunA17_Chr7g0261371 28.618 304 200 8 105 404 506 796 6.33e-23 102
Msa0382390 MtrunA17_Chr3g0122721 29.221 308 197 8 96 394 412 707 6.33e-23 102
Msa0382390 MtrunA17_Chr3g0111451 29.714 350 210 9 126 469 56 375 4.07e-22 98.2
Msa0382390 MtrunA17_Chr7g0248251 31.250 288 184 6 105 390 362 637 5.03e-22 99.8
Msa0382390 MtrunA17_Chr1g0199321 31.973 294 186 6 108 399 343 624 1.08e-21 98.6
Msa0382390 MtrunA17_Chr6g0449461 30.822 292 181 8 111 394 3 281 2.33e-19 89.0
Msa0382390 MtrunA17_Chr3g0134761 27.063 303 201 9 110 405 51 340 9.73e-18 84.3
Msa0382390 MtrunA17_Chr3g0118001 26.299 308 208 6 89 394 196 486 1.74e-16 82.0
Msa0382390 MtrunA17_Chr2g0290151 27.517 298 202 6 99 394 164 449 8.60e-16 79.7
Msa0382390 MtrunA17_Chr2g0284461 26.102 295 186 8 113 394 399 674 1.24e-13 73.6
Msa0382390 MtrunA17_Chr5g0437411 27.444 266 164 6 89 334 367 623 7.64e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382390 AT4G31890.3 60.300 534 157 13 1 495 1 518 0.0 553
Msa0382390 AT4G31890.2 60.300 534 157 13 1 495 1 518 0.0 553
Msa0382390 AT4G31890.1 60.300 534 157 13 1 495 1 518 0.0 553
Msa0382390 AT2G25130.1 58.696 506 160 10 1 495 1 468 5.74e-179 510
Msa0382390 AT2G27430.1 31.877 389 233 8 110 495 79 438 1.24e-41 154
Msa0382390 AT2G23140.3 29.250 400 244 11 15 394 247 627 1.55e-30 125
Msa0382390 AT2G23140.5 29.250 400 244 11 15 394 247 627 1.55e-30 125
Msa0382390 AT2G23140.1 29.250 400 244 11 15 394 439 819 2.73e-30 125
Msa0382390 AT2G23140.2 29.250 400 244 11 15 394 436 816 3.10e-30 125
Msa0382390 AT2G23140.4 29.250 400 244 11 15 394 436 816 3.10e-30 125
Msa0382390 AT1G67530.2 30.142 282 177 6 124 397 440 709 5.84e-27 115
Msa0382390 AT1G67530.1 30.142 282 177 6 124 397 440 709 5.84e-27 115
Msa0382390 AT1G67530.4 30.142 282 177 6 124 397 440 709 5.84e-27 115
Msa0382390 AT1G24330.1 29.316 307 200 6 118 418 434 729 1.84e-25 110
Msa0382390 AT1G24330.2 29.316 307 200 6 118 418 434 729 1.84e-25 110
Msa0382390 AT3G46510.1 33.088 272 162 8 125 391 369 625 2.23e-25 110
Msa0382390 AT3G54790.2 30.282 284 184 7 113 394 441 712 3.08e-25 110
Msa0382390 AT5G67340.1 29.653 317 207 7 79 394 396 697 3.56e-25 109
Msa0382390 AT5G67340.2 29.653 317 207 7 79 394 396 697 3.56e-25 109
Msa0382390 AT3G54790.3 30.068 296 192 8 113 405 477 760 4.56e-25 109
Msa0382390 AT3G54790.1 30.068 296 192 8 113 405 477 760 4.56e-25 109
Msa0382390 AT2G28830.1 31.023 303 187 10 109 403 284 572 1.42e-24 107
Msa0382390 AT3G03440.1 26.829 369 231 10 110 470 66 403 2.10e-23 102
Msa0382390 AT1G23030.1 29.514 288 188 6 110 394 333 608 2.17e-22 101
Msa0382390 AT1G27910.1 25.627 359 224 10 93 423 403 746 9.51e-22 99.4
Msa0382390 AT1G71020.2 30.822 292 186 7 107 394 192 471 2.10e-21 97.4
Msa0382390 AT1G71020.1 30.822 292 186 7 107 394 340 619 2.84e-21 97.8
Msa0382390 AT3G01400.1 27.152 302 200 8 110 408 64 348 3.42e-20 92.4
Msa0382390 AT5G58680.1 29.963 267 166 7 124 388 77 324 1.08e-19 90.9
Msa0382390 AT3G54850.1 31.802 283 179 6 122 402 359 629 1.35e-19 92.4
Msa0382390 AT4G12710.1 30.928 291 184 5 112 394 49 330 1.47e-18 88.2
Msa0382390 AT5G42340.1 30.263 304 198 6 90 391 361 652 2.49e-18 88.6
Msa0382390 AT5G65200.1 29.044 272 174 6 132 394 248 509 9.72e-18 86.7
Msa0382390 AT4G16490.1 28.333 300 199 7 99 394 174 461 1.35e-16 82.8
Msa0382390 AT5G14510.1 30.075 266 170 8 135 394 24 279 4.01e-16 79.7
Msa0382390 AT5G62560.1 26.298 289 200 5 109 394 235 513 4.20e-15 78.2

Find 127 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAGAAGTAGTGCAATTT+TGG 0.164673 3_1:-84921994 None:intergenic
TAAGGATGCAATCACAATTT+TGG 0.171187 3_1:+84923382 Msa0382390:CDS
AAATTGCACTACTTCTTATT+TGG 0.179679 3_1:+84921997 Msa0382390:five_prime_UTR
GATTCTAACAAACCAATAAT+TGG 0.187713 3_1:+84923095 Msa0382390:CDS
GATAAAGGGAAGCAGGTTTC+TGG 0.201909 3_1:+84923605 Msa0382390:CDS
GACGAATATTTCATTTGTTT+TGG 0.222706 3_1:+84923238 Msa0382390:CDS
GCACCAGAGGATCCAATTAT+TGG 0.223709 3_1:-84923107 None:intergenic
AAAGCAGCGATTGTTAAAAT+TGG 0.251431 3_1:+84922972 Msa0382390:CDS
GAAGCCTTCTCTTGACATTC+AGG 0.257804 3_1:-84923431 None:intergenic
CCTTTCAATTCTGAGCAATT+TGG 0.260209 3_1:+84923322 Msa0382390:CDS
TATATCGCGCAGGCTGTATT+AGG 0.273715 3_1:-84924300 None:intergenic
GCTTAACTACATTGGTCTTT+TGG 0.284866 3_1:+84923967 Msa0382390:three_prime_UTR
TCAACTGCAATTCGTCAAAA+TGG 0.295980 3_1:-84923899 None:intergenic
GAAGTTCATCGGAGAGAAAA+AGG 0.302706 3_1:-84922130 None:intergenic
AGGAGGTAAAGAGTGTTTAA+TGG 0.305362 3_1:+84923709 Msa0382390:CDS
TGATTGTGACAGTGACATTA+AGG 0.308355 3_1:-84924328 None:intergenic
AAGTGCTGATTCAGTTTCTT+TGG 0.320135 3_1:+84924115 Msa0382390:three_prime_UTR
TGAGGGTGTGTGGCAAGTTT+TGG 0.320265 3_1:-84922028 None:intergenic
TCTAGTTTAAGTTTATCTTT+AGG 0.323762 3_1:+84924066 Msa0382390:three_prime_UTR
GGACAGAATTATAGCTGATA+TGG 0.360205 3_1:+84924264 Msa0382390:three_prime_UTR
AAAAGCTATTAGTGCTGTTA+AGG 0.376170 3_1:+84923364 Msa0382390:CDS
GGCGGAGAAGCGGAAGTTAC+CGG 0.380244 3_1:-84922253 None:intergenic
TTTCCTTGGATTAAGTGCTT+TGG 0.382622 3_1:+84923073 Msa0382390:CDS
AAGTTAAACAAGATGCTCTT+CGG 0.386930 3_1:+84923189 Msa0382390:CDS
GAAGACGAAGAAGCACAAAT+AGG 0.399369 3_1:-84923668 None:intergenic
CAACTGTGTGTGAGTCTTTG+AGG 0.399678 3_1:-84922046 None:intergenic
AAAACCCTGCTGTTTATTAG+TGG 0.399890 3_1:+84924372 Msa0382390:three_prime_UTR
AGAGGCTCCGCCGCAGCTTA+AGG 0.401079 3_1:-84922304 None:intergenic
GCAATTGTTGCAAATTTCCT+TGG 0.402106 3_1:+84923059 Msa0382390:CDS
GAGGCACACTCGCAATGCTC+GGG 0.403694 3_1:+84922607 Msa0382390:CDS
GGGCAATTTCTCCTCTCGTT+GGG 0.404224 3_1:+84922628 Msa0382390:CDS
AGAGAAGACGGAGAAGCTAT+TGG 0.413753 3_1:+84922416 Msa0382390:CDS
GGAGATGAAGCATGTGGTTA+AGG 0.413838 3_1:+84922503 Msa0382390:CDS
CACATAAAGCTTATGCTGAT+AGG 0.414828 3_1:+84923474 Msa0382390:CDS
TACAATTCCTGCTTCAATCA+TGG 0.419654 3_1:-84923501 None:intergenic
TGCGAGTGTGCCTCTCGCTT+CGG 0.424046 3_1:-84922598 None:intergenic
TTGCTTGAGCTGACGCTTGT+GGG 0.429303 3_1:+84923530 Msa0382390:CDS
AGAAGTGATGGTGGAAACTT+AGG 0.433937 3_1:+84923629 Msa0382390:CDS
ATAAAGGGAAGCAGGTTTCT+GGG 0.440773 3_1:+84923606 Msa0382390:CDS
GGGGCAATTTCTCCTCTCGT+TGG 0.443059 3_1:+84922627 Msa0382390:CDS
GACGAAGCGGCGAATGGCAG+CGG 0.449732 3_1:+84922545 Msa0382390:CDS
AGTTAAACAAGATGCTCTTC+GGG 0.453105 3_1:+84923190 Msa0382390:CDS
CTTCTTCGCGGTGGTAATGT+CGG 0.455884 3_1:-84922335 None:intergenic
ACCTTGTGTTGTTGATTCAT+CGG 0.459932 3_1:+84923028 Msa0382390:CDS
AAACCAATAATTGGATCCTC+TGG 0.464190 3_1:+84923104 Msa0382390:CDS
TTCTCCGCGTAACTCCTTCA+CGG 0.469664 3_1:-84922385 None:intergenic
TAGTGCCTTGGCACAGAAAA+GGG 0.470454 3_1:+84923553 Msa0382390:CDS
AATGTAGTTCATCAGAGAAA+TGG 0.472227 3_1:+84922161 Msa0382390:exon
AGAGGCACACTCGCAATGCT+CGG 0.474592 3_1:+84922606 Msa0382390:CDS
CTATATGCTTTACTCAATCT+CGG 0.476166 3_1:+84922690 Msa0382390:CDS
TAAAGAGTGTTTAATGGAGG+AGG 0.476887 3_1:+84923715 Msa0382390:CDS
GGTGGTATGGCATGAACAAT+TGG 0.478862 3_1:+84924393 Msa0382390:three_prime_UTR
AAAACTTGGCAATGGAGGTA+TGG 0.480124 3_1:-84924196 None:intergenic
GAAGAAGGAAGAGACATTAA+CGG 0.484776 3_1:+84922482 Msa0382390:CDS
TAGGCTAGATAAAGGGAAGC+AGG 0.493141 3_1:+84923598 Msa0382390:CDS
CAGAGCTAATTTCTTCTTCG+CGG 0.495177 3_1:-84922347 None:intergenic
ATTGGATCTTCTGAACATAC+AGG 0.495508 3_1:+84922434 Msa0382390:CDS
GACGCTTGTGGGTAGTGCCT+TGG 0.497097 3_1:+84923541 Msa0382390:CDS
TTTCAGAGTTCTAACTAGGA+AGG 0.499120 3_1:-84923135 None:intergenic
CAATTGAATCAACGTTGCTC+CGG 0.501968 3_1:-84922194 None:intergenic
GTAGTGCCTTGGCACAGAAA+AGG 0.502811 3_1:+84923552 Msa0382390:CDS
AATGATGCGGCGGAAGGATG+AGG 0.503235 3_1:-84922274 None:intergenic
AACTGTGTGTGAGTCTTTGA+GGG 0.507553 3_1:-84922045 None:intergenic
GCTGTTTATTAGTGGTGGTA+TGG 0.512307 3_1:+84924380 Msa0382390:three_prime_UTR
ATTGCTTGAGCTGACGCTTG+TGG 0.515359 3_1:+84923529 Msa0382390:CDS
TTTGATATTGCGATAAATTG+CGG 0.526199 3_1:+84924243 Msa0382390:three_prime_UTR
TACCACCACTAATAAACAGC+AGG 0.526457 3_1:-84924377 None:intergenic
TTCAGAGTTCTAACTAGGAA+GGG 0.526621 3_1:-84923134 None:intergenic
GAGAGAAACTTACGCATCGT+TGG 0.530546 3_1:-84922718 None:intergenic
CGCAATATCAAAGATGTCCA+TGG 0.532402 3_1:-84924232 None:intergenic
TAATGTCACTGTCACAATCA+TGG 0.533954 3_1:+84924331 Msa0382390:three_prime_UTR
ACAACTAATCCATCCATCCT+CGG 0.534573 3_1:+84922069 Msa0382390:five_prime_UTR
AGGTAAAGAGTGTTTAATGG+AGG 0.535851 3_1:+84923712 Msa0382390:CDS
AATTAGCTCTGTCGCGTCGA+CGG 0.541624 3_1:+84922359 Msa0382390:CDS
GGAAGGATGAGGCGGAGAAG+CGG 0.545683 3_1:-84922263 None:intergenic
AGGCAAGCCATGATTGAAGC+AGG 0.546829 3_1:+84923494 Msa0382390:CDS
ACCCTGCTGTTTATTAGTGG+TGG 0.548154 3_1:+84924375 Msa0382390:three_prime_UTR
CAGGTTTCTGGGAGAAGTGA+TGG 0.551186 3_1:+84923617 Msa0382390:CDS
CCAATGTAGTTAAGCTGTTG+AGG 0.557105 3_1:-84923959 None:intergenic
CCTCAACAGCTTAACTACAT+TGG 0.561197 3_1:+84923959 Msa0382390:three_prime_UTR
GTCGAAAATGATGCGGCGGA+AGG 0.563722 3_1:-84922280 None:intergenic
CAACTAATCCATCCATCCTC+GGG 0.565375 3_1:+84922070 Msa0382390:five_prime_UTR
AGAAGTGCGAGAAGAGAAGA+CGG 0.565520 3_1:+84922404 Msa0382390:CDS
GTGGTATGGCATGAACAATT+GGG 0.567414 3_1:+84924394 Msa0382390:three_prime_UTR
CCAAATTGCTCAGAATTGAA+AGG 0.568365 3_1:-84923322 None:intergenic
TGTTGATTCATCGGTTTCTG+AGG 0.570602 3_1:+84923037 Msa0382390:CDS
AAATGCGGAATCGAAGAAGA+AGG 0.572172 3_1:+84922467 Msa0382390:CDS
CATGATGAAAATTGTCAAGA+GGG 0.572944 3_1:+84923802 Msa0382390:CDS
CGCGTCGACGGCAACCGTGA+AGG 0.579924 3_1:+84922371 Msa0382390:CDS
TGGCACAGAAAAGGGCATCA+AGG 0.580100 3_1:+84923561 Msa0382390:CDS
CTGCAATTCGTCAAAATGGA+AGG 0.580211 3_1:-84923895 None:intergenic
GAGAAATGGCTAAGTGTCAC+CGG 0.581139 3_1:+84922175 Msa0382390:exon
AGTGAAGCAAAACGCTCGGA+AGG 0.587883 3_1:-84923848 None:intergenic
AGACTCGACGAAGCGGCGAA+TGG 0.588292 3_1:+84922539 Msa0382390:CDS
AATCCAAAGCACTTAATCCA+AGG 0.592090 3_1:-84923076 None:intergenic
AGCTAATTTCTTCTTCGCGG+TGG 0.599852 3_1:-84922344 None:intergenic
AAAGAAACTGAATCAGCACT+TGG 0.603952 3_1:-84924113 None:intergenic
TTCACCTGAATGTCAAGAGA+AGG 0.606603 3_1:+84923427 Msa0382390:CDS
TTCGACGCCTTAAGCTGCGG+CGG 0.610282 3_1:+84922297 Msa0382390:CDS
AGTGAGTGAAGCAAAACGCT+CGG 0.610988 3_1:-84923852 None:intergenic
CAATTTGGTGTCGAGTCCCG+AGG 0.611390 3_1:+84923337 Msa0382390:CDS
ACATGATGAAAATTGTCAAG+AGG 0.618956 3_1:+84923801 Msa0382390:CDS
TGTGAGTCTTTGAGGGTGTG+TGG 0.627415 3_1:-84922038 None:intergenic
TTGCAGTTGATGGAGAGCAG+AGG 0.640662 3_1:+84923912 Msa0382390:three_prime_UTR
ATTGCACAGAAGAAGTTCAT+CGG 0.640779 3_1:-84922141 None:intergenic
TAGGAAGGGTATTGCACCAG+AGG 0.641343 3_1:-84923120 None:intergenic
GCGGAGAAGACTCGACGAAG+CGG 0.643214 3_1:+84922532 Msa0382390:CDS
GTAATGTCGGTGGTGTCGAG+AGG 0.644001 3_1:-84922322 None:intergenic
CTTCGCGGTGGTAATGTCGG+TGG 0.644496 3_1:-84922332 None:intergenic
GATAAACTCGATAGAAGACA+TGG 0.646492 3_1:+84923283 Msa0382390:CDS
AAAGAAGATTCCGAAGCGAG+AGG 0.648370 3_1:+84922588 Msa0382390:CDS
AGGCACACTCGCAATGCTCG+GGG 0.651896 3_1:+84922608 Msa0382390:CDS
GTTTCTGGGAGAAGTGATGG+TGG 0.653879 3_1:+84923620 Msa0382390:CDS
ACCGATGAATCAACAACACA+AGG 0.656484 3_1:-84923029 None:intergenic
AATTTGGTGTCGAGTCCCGA+GGG 0.656713 3_1:+84923338 Msa0382390:CDS
GATGCGGCGGAAGGATGAGG+CGG 0.658978 3_1:-84922271 None:intergenic
TTTGTGAAGACAGATGGAGG+AGG 0.662270 3_1:+84923692 Msa0382390:CDS
GAATCAAGCATCCCAACGAG+AGG 0.667890 3_1:-84922639 None:intergenic
ACCACCACTAATAAACAGCA+GGG 0.679712 3_1:-84924376 None:intergenic
CATGTGGTTAAGGATTTACG+CGG 0.683685 3_1:+84922513 Msa0382390:CDS
ACAGGTTCATGAAACAAATG+CGG 0.698371 3_1:+84922452 Msa0382390:CDS
AGGCGTCGAAAATGATGCGG+CGG 0.698501 3_1:-84922284 None:intergenic
TTAAGGCGTCGAAAATGATG+CGG 0.708242 3_1:-84922287 None:intergenic
GGAGAAGCGGAAGTTACCGG+CGG 0.717102 3_1:-84922250 None:intergenic
ATTAACGGAGATGAAGCATG+TGG 0.719445 3_1:+84922497 Msa0382390:CDS
GCAACCGTGAAGGAGTTACG+CGG 0.747970 3_1:+84922381 Msa0382390:CDS
TGTCACTGTCACAATCATGG+TGG 0.755714 3_1:+84924334 Msa0382390:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGAAAAATAATTTAATTTTT+AGG - chr3_1:84922106-84922125 None:intergenic 10.0%
!!! CGAAAAATAATTTAATTTTT+AGG - chr3_1:84922106-84922125 None:intergenic 10.0%
!!! AATTTAATTTTTAGGGATTT+TGG - chr3_1:84922098-84922117 None:intergenic 15.0%
!!! TTATCATATTCTTAATTTTG+TGG + chr3_1:84922840-84922859 Msa0382390:intron 15.0%
!!! AATTTAATTTTTAGGGATTT+TGG - chr3_1:84922098-84922117 None:intergenic 15.0%
!!! TTATCATATTCTTAATTTTG+TGG + chr3_1:84922840-84922859 Msa0382390:intron 15.0%
!! GAATATGATAAATTCATGAT+TGG - chr3_1:84922831-84922850 None:intergenic 20.0%
!! GATTAAACACAAAAATTTCA+CGG - chr3_1:84922920-84922939 None:intergenic 20.0%
!!! TTAATCTTTATTTGTTTCTG+TGG + chr3_1:84922934-84922953 Msa0382390:intron 20.0%
!!! TTCATACATTTTGATGATTA+TGG + chr3_1:84923451-84923470 Msa0382390:CDS 20.0%
!!! TCTAGTTTAAGTTTATCTTT+AGG + chr3_1:84924066-84924085 Msa0382390:three_prime_UTR 20.0%
!!! ATAGTGTCTATTATTTTTCA+TGG - chr3_1:84924161-84924180 None:intergenic 20.0%
!! GAATATGATAAATTCATGAT+TGG - chr3_1:84922831-84922850 None:intergenic 20.0%
!! GATTAAACACAAAAATTTCA+CGG - chr3_1:84922920-84922939 None:intergenic 20.0%
!!! TTAATCTTTATTTGTTTCTG+TGG + chr3_1:84922934-84922953 Msa0382390:intron 20.0%
!!! TTCATACATTTTGATGATTA+TGG + chr3_1:84923451-84923470 Msa0382390:CDS 20.0%
!!! TCTAGTTTAAGTTTATCTTT+AGG + chr3_1:84924066-84924085 Msa0382390:three_prime_UTR 20.0%
!!! ATAGTGTCTATTATTTTTCA+TGG - chr3_1:84924161-84924180 None:intergenic 20.0%
! AAATTGCACTACTTCTTATT+TGG + chr3_1:84921997-84922016 Msa0382390:five_prime_UTR 25.0%
! GATTCTAACAAACCAATAAT+TGG + chr3_1:84923095-84923114 Msa0382390:CDS 25.0%
!!! AATTTTTCAGAGTTCTAACT+AGG - chr3_1:84923142-84923161 None:intergenic 25.0%
!! GACGAATATTTCATTTGTTT+TGG + chr3_1:84923238-84923257 Msa0382390:CDS 25.0%
!!! ATTTGTTTTGGAAACTGATA+TGG + chr3_1:84923250-84923269 Msa0382390:CDS 25.0%
!!! TTTTGGTTGATGTATTGAAT+TGG + chr3_1:84923399-84923418 Msa0382390:CDS 25.0%
!!! AATGTTTTAGGCTAGATAAA+GGG + chr3_1:84923591-84923610 Msa0382390:CDS 25.0%
!!! TTTTGTTATCACTGATGTAA+TGG + chr3_1:84924001-84924020 Msa0382390:three_prime_UTR 25.0%
!!! TTTAGGTTCTTTTGTTGTTT+TGG + chr3_1:84924083-84924102 Msa0382390:three_prime_UTR 25.0%
!!! TTAGGTTCTTTTGTTGTTTT+GGG + chr3_1:84924084-84924103 Msa0382390:three_prime_UTR 25.0%
!!! CTATTATTTTTCATGGTTGA+TGG - chr3_1:84924154-84924173 None:intergenic 25.0%
! TGATTTAAAAAACTTGGCAA+TGG - chr3_1:84924207-84924226 None:intergenic 25.0%
!!! TTGCCAAGTTTTTTAAATCA+AGG + chr3_1:84924207-84924226 Msa0382390:three_prime_UTR 25.0%
!!! TGCCAAGTTTTTTAAATCAA+GGG + chr3_1:84924208-84924227 Msa0382390:three_prime_UTR 25.0%
! TTTGATATTGCGATAAATTG+CGG + chr3_1:84924243-84924262 Msa0382390:three_prime_UTR 25.0%
! AAATTGCACTACTTCTTATT+TGG + chr3_1:84921997-84922016 Msa0382390:five_prime_UTR 25.0%
! GATTCTAACAAACCAATAAT+TGG + chr3_1:84923095-84923114 Msa0382390:CDS 25.0%
!!! AATTTTTCAGAGTTCTAACT+AGG - chr3_1:84923142-84923161 None:intergenic 25.0%
!! GACGAATATTTCATTTGTTT+TGG + chr3_1:84923238-84923257 Msa0382390:CDS 25.0%
!!! ATTTGTTTTGGAAACTGATA+TGG + chr3_1:84923250-84923269 Msa0382390:CDS 25.0%
!!! TTTTGGTTGATGTATTGAAT+TGG + chr3_1:84923399-84923418 Msa0382390:CDS 25.0%
!!! AATGTTTTAGGCTAGATAAA+GGG + chr3_1:84923591-84923610 Msa0382390:CDS 25.0%
!!! TTTTGTTATCACTGATGTAA+TGG + chr3_1:84924001-84924020 Msa0382390:three_prime_UTR 25.0%
!!! TTTAGGTTCTTTTGTTGTTT+TGG + chr3_1:84924083-84924102 Msa0382390:three_prime_UTR 25.0%
!!! TTAGGTTCTTTTGTTGTTTT+GGG + chr3_1:84924084-84924103 Msa0382390:three_prime_UTR 25.0%
!!! CTATTATTTTTCATGGTTGA+TGG - chr3_1:84924154-84924173 None:intergenic 25.0%
! TGATTTAAAAAACTTGGCAA+TGG - chr3_1:84924207-84924226 None:intergenic 25.0%
!!! TTGCCAAGTTTTTTAAATCA+AGG + chr3_1:84924207-84924226 Msa0382390:three_prime_UTR 25.0%
!!! TGCCAAGTTTTTTAAATCAA+GGG + chr3_1:84924208-84924227 Msa0382390:three_prime_UTR 25.0%
! TTTGATATTGCGATAAATTG+CGG + chr3_1:84924243-84924262 Msa0382390:three_prime_UTR 25.0%
AATGTAGTTCATCAGAGAAA+TGG + chr3_1:84922161-84922180 Msa0382390:exon 30.0%
CTATATGCTTTACTCAATCT+CGG + chr3_1:84922690-84922709 Msa0382390:CDS 30.0%
AAAGCAGCGATTGTTAAAAT+TGG + chr3_1:84922972-84922991 Msa0382390:CDS 30.0%
AAGTTAAACAAGATGCTCTT+CGG + chr3_1:84923189-84923208 Msa0382390:CDS 30.0%
! AAAAGCTATTAGTGCTGTTA+AGG + chr3_1:84923364-84923383 Msa0382390:CDS 30.0%
! TAAGGATGCAATCACAATTT+TGG + chr3_1:84923382-84923401 Msa0382390:CDS 30.0%
! CAAGGATATTGCAATGTTTT+AGG + chr3_1:84923579-84923598 Msa0382390:CDS 30.0%
!! CAATGTTTTAGGCTAGATAA+AGG + chr3_1:84923590-84923609 Msa0382390:CDS 30.0%
ACATGATGAAAATTGTCAAG+AGG + chr3_1:84923801-84923820 Msa0382390:CDS 30.0%
CATGATGAAAATTGTCAAGA+GGG + chr3_1:84923802-84923821 Msa0382390:CDS 30.0%
TTTAAAAAACTTGGCAATGG+AGG - chr3_1:84924204-84924223 None:intergenic 30.0%
GACCCTTGATTTAAAAAACT+TGG - chr3_1:84924213-84924232 None:intergenic 30.0%
!!! TTTTTTAAATCAAGGGTCCA+TGG + chr3_1:84924215-84924234 Msa0382390:three_prime_UTR 30.0%
AATGTAGTTCATCAGAGAAA+TGG + chr3_1:84922161-84922180 Msa0382390:exon 30.0%
CTATATGCTTTACTCAATCT+CGG + chr3_1:84922690-84922709 Msa0382390:CDS 30.0%
AAAGCAGCGATTGTTAAAAT+TGG + chr3_1:84922972-84922991 Msa0382390:CDS 30.0%
AAGTTAAACAAGATGCTCTT+CGG + chr3_1:84923189-84923208 Msa0382390:CDS 30.0%
! AAAAGCTATTAGTGCTGTTA+AGG + chr3_1:84923364-84923383 Msa0382390:CDS 30.0%
! TAAGGATGCAATCACAATTT+TGG + chr3_1:84923382-84923401 Msa0382390:CDS 30.0%
! CAAGGATATTGCAATGTTTT+AGG + chr3_1:84923579-84923598 Msa0382390:CDS 30.0%
!! CAATGTTTTAGGCTAGATAA+AGG + chr3_1:84923590-84923609 Msa0382390:CDS 30.0%
ACATGATGAAAATTGTCAAG+AGG + chr3_1:84923801-84923820 Msa0382390:CDS 30.0%
CATGATGAAAATTGTCAAGA+GGG + chr3_1:84923802-84923821 Msa0382390:CDS 30.0%
TTTAAAAAACTTGGCAATGG+AGG - chr3_1:84924204-84924223 None:intergenic 30.0%
GACCCTTGATTTAAAAAACT+TGG - chr3_1:84924213-84924232 None:intergenic 30.0%
!!! TTTTTTAAATCAAGGGTCCA+TGG + chr3_1:84924215-84924234 Msa0382390:three_prime_UTR 30.0%
ATTGCACAGAAGAAGTTCAT+CGG - chr3_1:84922144-84922163 None:intergenic 35.0%
ATTGGATCTTCTGAACATAC+AGG + chr3_1:84922434-84922453 Msa0382390:CDS 35.0%
ACAGGTTCATGAAACAAATG+CGG + chr3_1:84922452-84922471 Msa0382390:CDS 35.0%
GAAGAAGGAAGAGACATTAA+CGG + chr3_1:84922482-84922501 Msa0382390:CDS 35.0%
!! ACCTTGTGTTGTTGATTCAT+CGG + chr3_1:84923028-84923047 Msa0382390:CDS 35.0%
GCAATTGTTGCAAATTTCCT+TGG + chr3_1:84923059-84923078 Msa0382390:CDS 35.0%
TTTCCTTGGATTAAGTGCTT+TGG + chr3_1:84923073-84923092 Msa0382390:CDS 35.0%
! AATCCAAAGCACTTAATCCA+AGG - chr3_1:84923079-84923098 None:intergenic 35.0%
AAACCAATAATTGGATCCTC+TGG + chr3_1:84923104-84923123 Msa0382390:CDS 35.0%
! TTCAGAGTTCTAACTAGGAA+GGG - chr3_1:84923137-84923156 None:intergenic 35.0%
! TTTCAGAGTTCTAACTAGGA+AGG - chr3_1:84923138-84923157 None:intergenic 35.0%
AGTTAAACAAGATGCTCTTC+GGG + chr3_1:84923190-84923209 Msa0382390:CDS 35.0%
GATAAACTCGATAGAAGACA+TGG + chr3_1:84923283-84923302 Msa0382390:CDS 35.0%
CCAAATTGCTCAGAATTGAA+AGG - chr3_1:84923325-84923344 None:intergenic 35.0%
CCTTTCAATTCTGAGCAATT+TGG + chr3_1:84923322-84923341 Msa0382390:CDS 35.0%
! ACTAATAGCTTTTCTACCCT+CGG - chr3_1:84923357-84923376 None:intergenic 35.0%
CACATAAAGCTTATGCTGAT+AGG + chr3_1:84923474-84923493 Msa0382390:CDS 35.0%
TACAATTCCTGCTTCAATCA+TGG - chr3_1:84923504-84923523 None:intergenic 35.0%
! TCTTCTTTTGTGAAGACAGA+TGG + chr3_1:84923686-84923705 Msa0382390:CDS 35.0%
!! AGGAGGTAAAGAGTGTTTAA+TGG + chr3_1:84923709-84923728 Msa0382390:CDS 35.0%
!! AGGTAAAGAGTGTTTAATGG+AGG + chr3_1:84923712-84923731 Msa0382390:CDS 35.0%
!! TAAAGAGTGTTTAATGGAGG+AGG + chr3_1:84923715-84923734 Msa0382390:CDS 35.0%
TCAACTGCAATTCGTCAAAA+TGG - chr3_1:84923902-84923921 None:intergenic 35.0%
! TTTTGACGAATTGCAGTTGA+TGG + chr3_1:84923902-84923921 Msa0382390:exon 35.0%
!!! GCTTAACTACATTGGTCTTT+TGG + chr3_1:84923967-84923986 Msa0382390:three_prime_UTR 35.0%
AAAGAAACTGAATCAGCACT+TGG - chr3_1:84924116-84924135 None:intergenic 35.0%
!! AAGTGCTGATTCAGTTTCTT+TGG + chr3_1:84924115-84924134 Msa0382390:three_prime_UTR 35.0%
GGACAGAATTATAGCTGATA+TGG + chr3_1:84924264-84924283 Msa0382390:three_prime_UTR 35.0%
!!! TAAGGTTTTTTATATCGCGC+AGG - chr3_1:84924313-84924332 None:intergenic 35.0%
TGATTGTGACAGTGACATTA+AGG - chr3_1:84924331-84924350 None:intergenic 35.0%
TAATGTCACTGTCACAATCA+TGG + chr3_1:84924331-84924350 Msa0382390:three_prime_UTR 35.0%
! AAAACCCTGCTGTTTATTAG+TGG + chr3_1:84924372-84924391 Msa0382390:three_prime_UTR 35.0%
ATTGCACAGAAGAAGTTCAT+CGG - chr3_1:84922144-84922163 None:intergenic 35.0%
ATTGGATCTTCTGAACATAC+AGG + chr3_1:84922434-84922453 Msa0382390:CDS 35.0%
ACAGGTTCATGAAACAAATG+CGG + chr3_1:84922452-84922471 Msa0382390:CDS 35.0%
GAAGAAGGAAGAGACATTAA+CGG + chr3_1:84922482-84922501 Msa0382390:CDS 35.0%
!! ACCTTGTGTTGTTGATTCAT+CGG + chr3_1:84923028-84923047 Msa0382390:CDS 35.0%
GCAATTGTTGCAAATTTCCT+TGG + chr3_1:84923059-84923078 Msa0382390:CDS 35.0%
TTTCCTTGGATTAAGTGCTT+TGG + chr3_1:84923073-84923092 Msa0382390:CDS 35.0%
! AATCCAAAGCACTTAATCCA+AGG - chr3_1:84923079-84923098 None:intergenic 35.0%
AAACCAATAATTGGATCCTC+TGG + chr3_1:84923104-84923123 Msa0382390:CDS 35.0%
! TTCAGAGTTCTAACTAGGAA+GGG - chr3_1:84923137-84923156 None:intergenic 35.0%
! TTTCAGAGTTCTAACTAGGA+AGG - chr3_1:84923138-84923157 None:intergenic 35.0%
AGTTAAACAAGATGCTCTTC+GGG + chr3_1:84923190-84923209 Msa0382390:CDS 35.0%
GATAAACTCGATAGAAGACA+TGG + chr3_1:84923283-84923302 Msa0382390:CDS 35.0%
CCAAATTGCTCAGAATTGAA+AGG - chr3_1:84923325-84923344 None:intergenic 35.0%
CCTTTCAATTCTGAGCAATT+TGG + chr3_1:84923322-84923341 Msa0382390:CDS 35.0%
! ACTAATAGCTTTTCTACCCT+CGG - chr3_1:84923357-84923376 None:intergenic 35.0%
CACATAAAGCTTATGCTGAT+AGG + chr3_1:84923474-84923493 Msa0382390:CDS 35.0%
TACAATTCCTGCTTCAATCA+TGG - chr3_1:84923504-84923523 None:intergenic 35.0%
! TCTTCTTTTGTGAAGACAGA+TGG + chr3_1:84923686-84923705 Msa0382390:CDS 35.0%
!! AGGAGGTAAAGAGTGTTTAA+TGG + chr3_1:84923709-84923728 Msa0382390:CDS 35.0%
!! AGGTAAAGAGTGTTTAATGG+AGG + chr3_1:84923712-84923731 Msa0382390:CDS 35.0%
!! TAAAGAGTGTTTAATGGAGG+AGG + chr3_1:84923715-84923734 Msa0382390:CDS 35.0%
TCAACTGCAATTCGTCAAAA+TGG - chr3_1:84923902-84923921 None:intergenic 35.0%
! TTTTGACGAATTGCAGTTGA+TGG + chr3_1:84923902-84923921 Msa0382390:exon 35.0%
!!! GCTTAACTACATTGGTCTTT+TGG + chr3_1:84923967-84923986 Msa0382390:three_prime_UTR 35.0%
AAAGAAACTGAATCAGCACT+TGG - chr3_1:84924116-84924135 None:intergenic 35.0%
!! AAGTGCTGATTCAGTTTCTT+TGG + chr3_1:84924115-84924134 Msa0382390:three_prime_UTR 35.0%
GGACAGAATTATAGCTGATA+TGG + chr3_1:84924264-84924283 Msa0382390:three_prime_UTR 35.0%
!!! TAAGGTTTTTTATATCGCGC+AGG - chr3_1:84924313-84924332 None:intergenic 35.0%
TGATTGTGACAGTGACATTA+AGG - chr3_1:84924331-84924350 None:intergenic 35.0%
TAATGTCACTGTCACAATCA+TGG + chr3_1:84924331-84924350 Msa0382390:three_prime_UTR 35.0%
! AAAACCCTGCTGTTTATTAG+TGG + chr3_1:84924372-84924391 Msa0382390:three_prime_UTR 35.0%
AACTGTGTGTGAGTCTTTGA+GGG - chr3_1:84922048-84922067 None:intergenic 40.0%
ACAACTAATCCATCCATCCT+CGG + chr3_1:84922069-84922088 Msa0382390:five_prime_UTR 40.0%
GAAGTTCATCGGAGAGAAAA+AGG - chr3_1:84922133-84922152 None:intergenic 40.0%
CAATTGAATCAACGTTGCTC+CGG - chr3_1:84922197-84922216 None:intergenic 40.0%
!! TTAAGGCGTCGAAAATGATG+CGG - chr3_1:84922290-84922309 None:intergenic 40.0%
CAGAGCTAATTTCTTCTTCG+CGG - chr3_1:84922350-84922369 None:intergenic 40.0%
AAATGCGGAATCGAAGAAGA+AGG + chr3_1:84922467-84922486 Msa0382390:CDS 40.0%
ATTAACGGAGATGAAGCATG+TGG + chr3_1:84922497-84922516 Msa0382390:CDS 40.0%
CATGTGGTTAAGGATTTACG+CGG + chr3_1:84922513-84922532 Msa0382390:CDS 40.0%
ACCGATGAATCAACAACACA+AGG - chr3_1:84923032-84923051 None:intergenic 40.0%
!! TGTTGATTCATCGGTTTCTG+AGG + chr3_1:84923037-84923056 Msa0382390:CDS 40.0%
! CTAATAGCTTTTCTACCCTC+GGG - chr3_1:84923356-84923375 None:intergenic 40.0%
TTCACCTGAATGTCAAGAGA+AGG + chr3_1:84923427-84923446 Msa0382390:CDS 40.0%
ATAAAGGGAAGCAGGTTTCT+GGG + chr3_1:84923606-84923625 Msa0382390:CDS 40.0%
!! AGAAGTGATGGTGGAAACTT+AGG + chr3_1:84923629-84923648 Msa0382390:CDS 40.0%
! GAAGACGAAGAAGCACAAAT+AGG - chr3_1:84923671-84923690 None:intergenic 40.0%
! TCTTTTGTGAAGACAGATGG+AGG + chr3_1:84923689-84923708 Msa0382390:CDS 40.0%
CTGCAATTCGTCAAAATGGA+AGG - chr3_1:84923898-84923917 None:intergenic 40.0%
CCAATGTAGTTAAGCTGTTG+AGG - chr3_1:84923962-84923981 None:intergenic 40.0%
CCTCAACAGCTTAACTACAT+TGG + chr3_1:84923959-84923978 Msa0382390:three_prime_UTR 40.0%
AAAACTTGGCAATGGAGGTA+TGG - chr3_1:84924199-84924218 None:intergenic 40.0%
CGCAATATCAAAGATGTCCA+TGG - chr3_1:84924235-84924254 None:intergenic 40.0%
ACCACCACTAATAAACAGCA+GGG - chr3_1:84924379-84924398 None:intergenic 40.0%
TACCACCACTAATAAACAGC+AGG - chr3_1:84924380-84924399 None:intergenic 40.0%
GCTGTTTATTAGTGGTGGTA+TGG + chr3_1:84924380-84924399 Msa0382390:three_prime_UTR 40.0%
GTGGTATGGCATGAACAATT+GGG + chr3_1:84924394-84924413 Msa0382390:three_prime_UTR 40.0%
AACTGTGTGTGAGTCTTTGA+GGG - chr3_1:84922048-84922067 None:intergenic 40.0%
ACAACTAATCCATCCATCCT+CGG + chr3_1:84922069-84922088 Msa0382390:five_prime_UTR 40.0%
GAAGTTCATCGGAGAGAAAA+AGG - chr3_1:84922133-84922152 None:intergenic 40.0%
CAATTGAATCAACGTTGCTC+CGG - chr3_1:84922197-84922216 None:intergenic 40.0%
!! TTAAGGCGTCGAAAATGATG+CGG - chr3_1:84922290-84922309 None:intergenic 40.0%
CAGAGCTAATTTCTTCTTCG+CGG - chr3_1:84922350-84922369 None:intergenic 40.0%
AAATGCGGAATCGAAGAAGA+AGG + chr3_1:84922467-84922486 Msa0382390:CDS 40.0%
ATTAACGGAGATGAAGCATG+TGG + chr3_1:84922497-84922516 Msa0382390:CDS 40.0%
CATGTGGTTAAGGATTTACG+CGG + chr3_1:84922513-84922532 Msa0382390:CDS 40.0%
ACCGATGAATCAACAACACA+AGG - chr3_1:84923032-84923051 None:intergenic 40.0%
!! TGTTGATTCATCGGTTTCTG+AGG + chr3_1:84923037-84923056 Msa0382390:CDS 40.0%
! CTAATAGCTTTTCTACCCTC+GGG - chr3_1:84923356-84923375 None:intergenic 40.0%
TTCACCTGAATGTCAAGAGA+AGG + chr3_1:84923427-84923446 Msa0382390:CDS 40.0%
ATAAAGGGAAGCAGGTTTCT+GGG + chr3_1:84923606-84923625 Msa0382390:CDS 40.0%
!! AGAAGTGATGGTGGAAACTT+AGG + chr3_1:84923629-84923648 Msa0382390:CDS 40.0%
! GAAGACGAAGAAGCACAAAT+AGG - chr3_1:84923671-84923690 None:intergenic 40.0%
! TCTTTTGTGAAGACAGATGG+AGG + chr3_1:84923689-84923708 Msa0382390:CDS 40.0%
CTGCAATTCGTCAAAATGGA+AGG - chr3_1:84923898-84923917 None:intergenic 40.0%
CCAATGTAGTTAAGCTGTTG+AGG - chr3_1:84923962-84923981 None:intergenic 40.0%
CCTCAACAGCTTAACTACAT+TGG + chr3_1:84923959-84923978 Msa0382390:three_prime_UTR 40.0%
AAAACTTGGCAATGGAGGTA+TGG - chr3_1:84924199-84924218 None:intergenic 40.0%
CGCAATATCAAAGATGTCCA+TGG - chr3_1:84924235-84924254 None:intergenic 40.0%
ACCACCACTAATAAACAGCA+GGG - chr3_1:84924379-84924398 None:intergenic 40.0%
TACCACCACTAATAAACAGC+AGG - chr3_1:84924380-84924399 None:intergenic 40.0%
GCTGTTTATTAGTGGTGGTA+TGG + chr3_1:84924380-84924399 Msa0382390:three_prime_UTR 40.0%
GTGGTATGGCATGAACAATT+GGG + chr3_1:84924394-84924413 Msa0382390:three_prime_UTR 40.0%
CAACTGTGTGTGAGTCTTTG+AGG - chr3_1:84922049-84922068 None:intergenic 45.0%
CAACTAATCCATCCATCCTC+GGG + chr3_1:84922070-84922089 Msa0382390:five_prime_UTR 45.0%
!!! TTTAGGGATTTTGGTTCCCG+AGG - chr3_1:84922089-84922108 None:intergenic 45.0%
GAGAAATGGCTAAGTGTCAC+CGG + chr3_1:84922175-84922194 Msa0382390:exon 45.0%
! ATTTTCGACGCCTTAAGCTG+CGG + chr3_1:84922294-84922313 Msa0382390:CDS 45.0%
AGCTAATTTCTTCTTCGCGG+TGG - chr3_1:84922347-84922366 None:intergenic 45.0%
! AGAAGTGCGAGAAGAGAAGA+CGG + chr3_1:84922404-84922423 Msa0382390:CDS 45.0%
AGAGAAGACGGAGAAGCTAT+TGG + chr3_1:84922416-84922435 Msa0382390:CDS 45.0%
GGAGATGAAGCATGTGGTTA+AGG + chr3_1:84922503-84922522 Msa0382390:CDS 45.0%
AAAGAAGATTCCGAAGCGAG+AGG + chr3_1:84922588-84922607 Msa0382390:CDS 45.0%
GAGAGAAACTTACGCATCGT+TGG - chr3_1:84922721-84922740 None:intergenic 45.0%
GCACCAGAGGATCCAATTAT+TGG - chr3_1:84923110-84923129 None:intergenic 45.0%
GAAGCCTTCTCTTGACATTC+AGG - chr3_1:84923434-84923453 None:intergenic 45.0%
TAGTGCCTTGGCACAGAAAA+GGG + chr3_1:84923553-84923572 Msa0382390:CDS 45.0%
TAGGCTAGATAAAGGGAAGC+AGG + chr3_1:84923598-84923617 Msa0382390:CDS 45.0%
GATAAAGGGAAGCAGGTTTC+TGG + chr3_1:84923605-84923624 Msa0382390:CDS 45.0%
TTTGTGAAGACAGATGGAGG+AGG + chr3_1:84923692-84923711 Msa0382390:CDS 45.0%
AGTGAGTGAAGCAAAACGCT+CGG - chr3_1:84923855-84923874 None:intergenic 45.0%
TATATCGCGCAGGCTGTATT+AGG - chr3_1:84924303-84924322 None:intergenic 45.0%
TGTCACTGTCACAATCATGG+TGG + chr3_1:84924334-84924353 Msa0382390:three_prime_UTR 45.0%
! ACCCTGCTGTTTATTAGTGG+TGG + chr3_1:84924375-84924394 Msa0382390:three_prime_UTR 45.0%
GGTGGTATGGCATGAACAAT+TGG + chr3_1:84924393-84924412 Msa0382390:three_prime_UTR 45.0%
CAACTGTGTGTGAGTCTTTG+AGG - chr3_1:84922049-84922068 None:intergenic 45.0%
CAACTAATCCATCCATCCTC+GGG + chr3_1:84922070-84922089 Msa0382390:five_prime_UTR 45.0%
!!! TTTAGGGATTTTGGTTCCCG+AGG - chr3_1:84922089-84922108 None:intergenic 45.0%
GAGAAATGGCTAAGTGTCAC+CGG + chr3_1:84922175-84922194 Msa0382390:exon 45.0%
! ATTTTCGACGCCTTAAGCTG+CGG + chr3_1:84922294-84922313 Msa0382390:CDS 45.0%
AGCTAATTTCTTCTTCGCGG+TGG - chr3_1:84922347-84922366 None:intergenic 45.0%
! AGAAGTGCGAGAAGAGAAGA+CGG + chr3_1:84922404-84922423 Msa0382390:CDS 45.0%
AGAGAAGACGGAGAAGCTAT+TGG + chr3_1:84922416-84922435 Msa0382390:CDS 45.0%
GGAGATGAAGCATGTGGTTA+AGG + chr3_1:84922503-84922522 Msa0382390:CDS 45.0%
AAAGAAGATTCCGAAGCGAG+AGG + chr3_1:84922588-84922607 Msa0382390:CDS 45.0%
GAGAGAAACTTACGCATCGT+TGG - chr3_1:84922721-84922740 None:intergenic 45.0%
GCACCAGAGGATCCAATTAT+TGG - chr3_1:84923110-84923129 None:intergenic 45.0%
GAAGCCTTCTCTTGACATTC+AGG - chr3_1:84923434-84923453 None:intergenic 45.0%
TAGTGCCTTGGCACAGAAAA+GGG + chr3_1:84923553-84923572 Msa0382390:CDS 45.0%
TAGGCTAGATAAAGGGAAGC+AGG + chr3_1:84923598-84923617 Msa0382390:CDS 45.0%
GATAAAGGGAAGCAGGTTTC+TGG + chr3_1:84923605-84923624 Msa0382390:CDS 45.0%
TTTGTGAAGACAGATGGAGG+AGG + chr3_1:84923692-84923711 Msa0382390:CDS 45.0%
AGTGAGTGAAGCAAAACGCT+CGG - chr3_1:84923855-84923874 None:intergenic 45.0%
TATATCGCGCAGGCTGTATT+AGG - chr3_1:84924303-84924322 None:intergenic 45.0%
TGTCACTGTCACAATCATGG+TGG + chr3_1:84924334-84924353 Msa0382390:three_prime_UTR 45.0%
! ACCCTGCTGTTTATTAGTGG+TGG + chr3_1:84924375-84924394 Msa0382390:three_prime_UTR 45.0%
GGTGGTATGGCATGAACAAT+TGG + chr3_1:84924393-84924412 Msa0382390:three_prime_UTR 45.0%
!!! GAAAAATAATTTAATTTTTA+GGG - chr3_1:84922105-84922124 None:intergenic 5.0%
!!! GAAAAATAATTTAATTTTTA+GGG - chr3_1:84922105-84922124 None:intergenic 5.0%
!!! GGTGTGTGGCAAGTTTTGGA+GGG - chr3_1:84922027-84922046 None:intergenic 50.0%
!! TGAGGGTGTGTGGCAAGTTT+TGG - chr3_1:84922031-84922050 None:intergenic 50.0%
! TGTGAGTCTTTGAGGGTGTG+TGG - chr3_1:84922041-84922060 None:intergenic 50.0%
!!! TTTTGGTTCCCGAGGATGGA+TGG - chr3_1:84922081-84922100 None:intergenic 50.0%
! CGGTAGTGTTTTTCGCATGG+TGG - chr3_1:84922233-84922252 None:intergenic 50.0%
CATGCGAAAAACACTACCGC+CGG + chr3_1:84922234-84922253 Msa0382390:CDS 50.0%
! CTTCTTCGCGGTGGTAATGT+CGG - chr3_1:84922338-84922357 None:intergenic 50.0%
!! AATTAGCTCTGTCGCGTCGA+CGG + chr3_1:84922359-84922378 Msa0382390:CDS 50.0%
TTCTCCGCGTAACTCCTTCA+CGG - chr3_1:84922388-84922407 None:intergenic 50.0%
GGGCAATTTCTCCTCTCGTT+GGG + chr3_1:84922628-84922647 Msa0382390:CDS 50.0%
GAATCAAGCATCCCAACGAG+AGG - chr3_1:84922642-84922661 None:intergenic 50.0%
!! TAGGAAGGGTATTGCACCAG+AGG - chr3_1:84923123-84923142 None:intergenic 50.0%
!! AATTTGGTGTCGAGTCCCGA+GGG + chr3_1:84923338-84923357 Msa0382390:CDS 50.0%
AGGCAAGCCATGATTGAAGC+AGG + chr3_1:84923494-84923513 Msa0382390:CDS 50.0%
ATTGCTTGAGCTGACGCTTG+TGG + chr3_1:84923529-84923548 Msa0382390:CDS 50.0%
TTGCTTGAGCTGACGCTTGT+GGG + chr3_1:84923530-84923549 Msa0382390:CDS 50.0%
GTAGTGCCTTGGCACAGAAA+AGG + chr3_1:84923552-84923571 Msa0382390:CDS 50.0%
! TGATGCCCTTTTCTGTGCCA+AGG - chr3_1:84923561-84923580 None:intergenic 50.0%
!! TGGCACAGAAAAGGGCATCA+AGG + chr3_1:84923561-84923580 Msa0382390:CDS 50.0%
! CAGGTTTCTGGGAGAAGTGA+TGG + chr3_1:84923617-84923636 Msa0382390:CDS 50.0%
! GTTTCTGGGAGAAGTGATGG+TGG + chr3_1:84923620-84923639 Msa0382390:CDS 50.0%
AGTGAAGCAAAACGCTCGGA+AGG - chr3_1:84923851-84923870 None:intergenic 50.0%
!! TTGCAGTTGATGGAGAGCAG+AGG + chr3_1:84923912-84923931 Msa0382390:three_prime_UTR 50.0%
!!! GGTGTGTGGCAAGTTTTGGA+GGG - chr3_1:84922027-84922046 None:intergenic 50.0%
!! TGAGGGTGTGTGGCAAGTTT+TGG - chr3_1:84922031-84922050 None:intergenic 50.0%
! TGTGAGTCTTTGAGGGTGTG+TGG - chr3_1:84922041-84922060 None:intergenic 50.0%
!!! TTTTGGTTCCCGAGGATGGA+TGG - chr3_1:84922081-84922100 None:intergenic 50.0%
! CGGTAGTGTTTTTCGCATGG+TGG - chr3_1:84922233-84922252 None:intergenic 50.0%
CATGCGAAAAACACTACCGC+CGG + chr3_1:84922234-84922253 Msa0382390:CDS 50.0%
! CTTCTTCGCGGTGGTAATGT+CGG - chr3_1:84922338-84922357 None:intergenic 50.0%
!! AATTAGCTCTGTCGCGTCGA+CGG + chr3_1:84922359-84922378 Msa0382390:CDS 50.0%
TTCTCCGCGTAACTCCTTCA+CGG - chr3_1:84922388-84922407 None:intergenic 50.0%
GGGCAATTTCTCCTCTCGTT+GGG + chr3_1:84922628-84922647 Msa0382390:CDS 50.0%
GAATCAAGCATCCCAACGAG+AGG - chr3_1:84922642-84922661 None:intergenic 50.0%
!! TAGGAAGGGTATTGCACCAG+AGG - chr3_1:84923123-84923142 None:intergenic 50.0%
!! AATTTGGTGTCGAGTCCCGA+GGG + chr3_1:84923338-84923357 Msa0382390:CDS 50.0%
AGGCAAGCCATGATTGAAGC+AGG + chr3_1:84923494-84923513 Msa0382390:CDS 50.0%
ATTGCTTGAGCTGACGCTTG+TGG + chr3_1:84923529-84923548 Msa0382390:CDS 50.0%
TTGCTTGAGCTGACGCTTGT+GGG + chr3_1:84923530-84923549 Msa0382390:CDS 50.0%
GTAGTGCCTTGGCACAGAAA+AGG + chr3_1:84923552-84923571 Msa0382390:CDS 50.0%
! TGATGCCCTTTTCTGTGCCA+AGG - chr3_1:84923561-84923580 None:intergenic 50.0%
!! TGGCACAGAAAAGGGCATCA+AGG + chr3_1:84923561-84923580 Msa0382390:CDS 50.0%
! CAGGTTTCTGGGAGAAGTGA+TGG + chr3_1:84923617-84923636 Msa0382390:CDS 50.0%
! GTTTCTGGGAGAAGTGATGG+TGG + chr3_1:84923620-84923639 Msa0382390:CDS 50.0%
AGTGAAGCAAAACGCTCGGA+AGG - chr3_1:84923851-84923870 None:intergenic 50.0%
!! TTGCAGTTGATGGAGAGCAG+AGG + chr3_1:84923912-84923931 Msa0382390:three_prime_UTR 50.0%
!! GGGTGTGTGGCAAGTTTTGG+AGG - chr3_1:84922028-84922047 None:intergenic 55.0%
!!! GGGATTTTGGTTCCCGAGGA+TGG - chr3_1:84922085-84922104 None:intergenic 55.0%
! CGGCGGTAGTGTTTTTCGCA+TGG - chr3_1:84922236-84922255 None:intergenic 55.0%
AATGATGCGGCGGAAGGATG+AGG - chr3_1:84922277-84922296 None:intergenic 55.0%
GTCGAAAATGATGCGGCGGA+AGG - chr3_1:84922283-84922302 None:intergenic 55.0%
!! AGGCGTCGAAAATGATGCGG+CGG - chr3_1:84922287-84922306 None:intergenic 55.0%
! GTAATGTCGGTGGTGTCGAG+AGG - chr3_1:84922325-84922344 None:intergenic 55.0%
GCAACCGTGAAGGAGTTACG+CGG + chr3_1:84922381-84922400 Msa0382390:CDS 55.0%
! AGAGGCACACTCGCAATGCT+CGG + chr3_1:84922606-84922625 Msa0382390:CDS 55.0%
GGGGCAATTTCTCCTCTCGT+TGG + chr3_1:84922627-84922646 Msa0382390:CDS 55.0%
!! CAATTTGGTGTCGAGTCCCG+AGG + chr3_1:84923337-84923356 Msa0382390:CDS 55.0%
!! GGGTGTGTGGCAAGTTTTGG+AGG - chr3_1:84922028-84922047 None:intergenic 55.0%
!!! GGGATTTTGGTTCCCGAGGA+TGG - chr3_1:84922085-84922104 None:intergenic 55.0%
! CGGCGGTAGTGTTTTTCGCA+TGG - chr3_1:84922236-84922255 None:intergenic 55.0%
AATGATGCGGCGGAAGGATG+AGG - chr3_1:84922277-84922296 None:intergenic 55.0%
GTCGAAAATGATGCGGCGGA+AGG - chr3_1:84922283-84922302 None:intergenic 55.0%
!! AGGCGTCGAAAATGATGCGG+CGG - chr3_1:84922287-84922306 None:intergenic 55.0%
! GTAATGTCGGTGGTGTCGAG+AGG - chr3_1:84922325-84922344 None:intergenic 55.0%
GCAACCGTGAAGGAGTTACG+CGG + chr3_1:84922381-84922400 Msa0382390:CDS 55.0%
! AGAGGCACACTCGCAATGCT+CGG + chr3_1:84922606-84922625 Msa0382390:CDS 55.0%
GGGGCAATTTCTCCTCTCGT+TGG + chr3_1:84922627-84922646 Msa0382390:CDS 55.0%
!! CAATTTGGTGTCGAGTCCCG+AGG + chr3_1:84923337-84923356 Msa0382390:CDS 55.0%
GGAGAAGCGGAAGTTACCGG+CGG - chr3_1:84922253-84922272 None:intergenic 60.0%
GGCGGAGAAGCGGAAGTTAC+CGG - chr3_1:84922256-84922275 None:intergenic 60.0%
GGAAGGATGAGGCGGAGAAG+CGG - chr3_1:84922266-84922285 None:intergenic 60.0%
TTCGACGCCTTAAGCTGCGG+CGG + chr3_1:84922297-84922316 Msa0382390:CDS 60.0%
! CTTCGCGGTGGTAATGTCGG+TGG - chr3_1:84922335-84922354 None:intergenic 60.0%
GCGGAGAAGACTCGACGAAG+CGG + chr3_1:84922532-84922551 Msa0382390:CDS 60.0%
AGACTCGACGAAGCGGCGAA+TGG + chr3_1:84922539-84922558 Msa0382390:CDS 60.0%
TGCGAGTGTGCCTCTCGCTT+CGG - chr3_1:84922601-84922620 None:intergenic 60.0%
GAGGCACACTCGCAATGCTC+GGG + chr3_1:84922607-84922626 Msa0382390:CDS 60.0%
AGGCACACTCGCAATGCTCG+GGG + chr3_1:84922608-84922627 Msa0382390:CDS 60.0%
GACGCTTGTGGGTAGTGCCT+TGG + chr3_1:84923541-84923560 Msa0382390:CDS 60.0%
GGAGAAGCGGAAGTTACCGG+CGG - chr3_1:84922253-84922272 None:intergenic 60.0%
GGCGGAGAAGCGGAAGTTAC+CGG - chr3_1:84922256-84922275 None:intergenic 60.0%
GGAAGGATGAGGCGGAGAAG+CGG - chr3_1:84922266-84922285 None:intergenic 60.0%
TTCGACGCCTTAAGCTGCGG+CGG + chr3_1:84922297-84922316 Msa0382390:CDS 60.0%
! CTTCGCGGTGGTAATGTCGG+TGG - chr3_1:84922335-84922354 None:intergenic 60.0%
GCGGAGAAGACTCGACGAAG+CGG + chr3_1:84922532-84922551 Msa0382390:CDS 60.0%
AGACTCGACGAAGCGGCGAA+TGG + chr3_1:84922539-84922558 Msa0382390:CDS 60.0%
TGCGAGTGTGCCTCTCGCTT+CGG - chr3_1:84922601-84922620 None:intergenic 60.0%
GAGGCACACTCGCAATGCTC+GGG + chr3_1:84922607-84922626 Msa0382390:CDS 60.0%
AGGCACACTCGCAATGCTCG+GGG + chr3_1:84922608-84922627 Msa0382390:CDS 60.0%
GACGCTTGTGGGTAGTGCCT+TGG + chr3_1:84923541-84923560 Msa0382390:CDS 60.0%
GATGCGGCGGAAGGATGAGG+CGG - chr3_1:84922274-84922293 None:intergenic 65.0%
AGAGGCTCCGCCGCAGCTTA+AGG - chr3_1:84922307-84922326 None:intergenic 65.0%
GACGAAGCGGCGAATGGCAG+CGG + chr3_1:84922545-84922564 Msa0382390:CDS 65.0%
GATGCGGCGGAAGGATGAGG+CGG - chr3_1:84922274-84922293 None:intergenic 65.0%
AGAGGCTCCGCCGCAGCTTA+AGG - chr3_1:84922307-84922326 None:intergenic 65.0%
GACGAAGCGGCGAATGGCAG+CGG + chr3_1:84922545-84922564 Msa0382390:CDS 65.0%
! CGCGTCGACGGCAACCGTGA+AGG + chr3_1:84922371-84922390 Msa0382390:CDS 70.0%
! CGCGTCGACGGCAACCGTGA+AGG + chr3_1:84922371-84922390 Msa0382390:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84921995 84924429 84921995 ID=Msa0382390;Name=Msa0382390
chr3_1 mRNA 84921995 84924429 84921995 ID=Msa0382390-mRNA-1;Parent=Msa0382390;Name=Msa0382390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=185|1|1|1|1|1|2|522|495
chr3_1 exon 84921995 84922727 84921995 ID=Msa0382390-mRNA-1:exon:22194;Parent=Msa0382390-mRNA-1
chr3_1 exon 84922968 84924429 84922968 ID=Msa0382390-mRNA-1:exon:22195;Parent=Msa0382390-mRNA-1
chr3_1 five_prime_UTR 84921995 84922179 84921995 ID=Msa0382390-mRNA-1:five_prime_utr;Parent=Msa0382390-mRNA-1
chr3_1 CDS 84922180 84922727 84922180 ID=Msa0382390-mRNA-1:cds;Parent=Msa0382390-mRNA-1
chr3_1 CDS 84922968 84923907 84922968 ID=Msa0382390-mRNA-1:cds;Parent=Msa0382390-mRNA-1
chr3_1 three_prime_UTR 84923908 84924429 84923908 ID=Msa0382390-mRNA-1:three_prime_utr;Parent=Msa0382390-mRNA-1
Gene Sequence

>Msa0382390

ATGGCTAAGTGTCACCGGAGCAACGTTGATTCAATTGTTCTCGATCATCACCACCATGCGAAAAACACTACCGCCGGTAACTTCCGCTTCTCCGCCTCATCCTTCCGCCGCATCATTTTCGACGCCTTAAGCTGCGGCGGAGCCTCTCGACACCACCGACATTACCACCGCGAAGAAGAAATTAGCTCTGTCGCGTCGACGGCAACCGTGAAGGAGTTACGCGGAGAAGTGCGAGAAGAGAAGACGGAGAAGCTATTGGATCTTCTGAACATACAGGTTCATGAAACAAATGCGGAATCGAAGAAGAAGGAAGAGACATTAACGGAGATGAAGCATGTGGTTAAGGATTTACGCGGAGAAGACTCGACGAAGCGGCGAATGGCAGCGGCGAGAGTAAGATCACTGACGAAAGAAGATTCCGAAGCGAGAGGCACACTCGCAATGCTCGGGGCAATTTCTCCTCTCGTTGGGATGCTTGATTCAGAAGATCTTCATTCTCAGATTGATTCTCTATATGCTTTACTCAATCTCGGAATCGCCAACGATGCAAATAAAGCAGCGATTGTTAAAATTGGTGCTGTTCACAAGATGCTGAAGCTGATTGAATCACCTTGTGTTGTTGATTCATCGGTTTCTGAGGCAATTGTTGCAAATTTCCTTGGATTAAGTGCTTTGGATTCTAACAAACCAATAATTGGATCCTCTGGTGCAATACCCTTCCTAGTTAGAACTCTGAAAAATTTAGATAATAGTAGTAAAAGTAGTTCTCAAGTTAAACAAGATGCTCTTCGGGCTCTTTACAATCTATCGATCAATCAGACGAATATTTCATTTGTTTTGGAAACTGATATGGTCGCGTTTTTGATAAACTCGATAGAAGACATGGAAGTGAGTGAGAGAGTCCTTTCAATTCTGAGCAATTTGGTGTCGAGTCCCGAGGGTAGAAAAGCTATTAGTGCTGTTAAGGATGCAATCACAATTTTGGTTGATGTATTGAATTGGACAGATTCACCTGAATGTCAAGAGAAGGCTTCATACATTTTGATGATTATGGCACATAAAGCTTATGCTGATAGGCAAGCCATGATTGAAGCAGGAATTGTATCGTCATTGCTTGAGCTGACGCTTGTGGGTAGTGCCTTGGCACAGAAAAGGGCATCAAGGATATTGCAATGTTTTAGGCTAGATAAAGGGAAGCAGGTTTCTGGGAGAAGTGATGGTGGAAACTTAGGTTTAACTGTCTCTGCGCCTATTTGTGCTTCTTCGTCTTCTTTTGTGAAGACAGATGGAGGAGGTAAAGAGTGTTTAATGGAGGAGGTGAATATGATGAGTGATGAAAAGAAAGCAGTGAAGCAGTTAGTTCAGCAGAGCTTGCAGAACAACATGATGAAAATTGTCAAGAGGGCTAACTTGCGTCAAGATTTTGTTCCTTCCGAGCGTTTTGCTTCACTCACTTCAAGTTCGACATCTAAGAGCCTTCCATTTTGA

Protein sequence

>Msa0382390

MAKCHRSNVDSIVLDHHHHAKNTTAGNFRFSASSFRRIIFDALSCGGASRHHRHYHREEEISSVASTATVKELRGEVREEKTEKLLDLLNIQVHETNAESKKKEETLTEMKHVVKDLRGEDSTKRRMAAARVRSLTKEDSEARGTLAMLGAISPLVGMLDSEDLHSQIDSLYALLNLGIANDANKAAIVKIGAVHKMLKLIESPCVVDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLKNLDNSSKSSSQVKQDALRALYNLSINQTNISFVLETDMVAFLINSIEDMEVSERVLSILSNLVSSPEGRKAISAVKDAITILVDVLNWTDSPECQEKASYILMIMAHKAYADRQAMIEAGIVSSLLELTLVGSALAQKRASRILQCFRLDKGKQVSGRSDGGNLGLTVSAPICASSSSFVKTDGGGKECLMEEVNMMSDEKKAVKQLVQQSLQNNMMKIVKRANLRQDFVPSERFASLTSSSTSKSLPF*