AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432140 MtrunA17_Chr3g0137061 97.172 495 14 0 1 495 1 495 0.0 980
Msa0432140 MtrunA17_Chr1g0149941 63.985 522 154 7 1 495 46 560 0.0 545
Msa0432140 MtrunA17_Chr2g0283691 32.124 386 231 6 110 495 86 440 7.72e-42 154
Msa0432140 MtrunA17_Chr8g0377151 31.290 310 192 8 95 394 411 709 1.53e-29 122
Msa0432140 MtrunA17_Chr4g0044411 30.094 319 207 7 79 394 342 647 1.51e-26 113
Msa0432140 MtrunA17_Chr4g0031431 31.488 289 178 8 108 391 351 624 1.61e-26 113
Msa0432140 MtrunA17_Chr5g0435041 32.721 272 166 6 128 394 38 297 2.19e-26 110
Msa0432140 MtrunA17_Chr5g0429231 34.799 273 161 5 128 394 52 313 7.33e-25 105
Msa0432140 MtrunA17_Chr1g0152561 28.814 295 196 6 110 402 61 343 1.08e-24 105
Msa0432140 MtrunA17_Chr1g0183781 30.137 292 188 7 107 394 434 713 6.84e-24 105
Msa0432140 MtrunA17_Chr3g0106931 31.834 289 180 7 109 394 552 826 1.24e-23 104
Msa0432140 MtrunA17_Chr7g0237931 30.526 285 186 5 107 391 331 603 2.04e-23 103
Msa0432140 MtrunA17_Chr7g0261371 28.618 304 200 8 105 404 506 796 6.33e-23 102
Msa0432140 MtrunA17_Chr3g0122721 29.221 308 197 8 96 394 412 707 6.33e-23 102
Msa0432140 MtrunA17_Chr3g0111451 29.714 350 210 9 126 469 56 375 4.07e-22 98.2
Msa0432140 MtrunA17_Chr7g0248251 31.250 288 184 6 105 390 362 637 5.03e-22 99.8
Msa0432140 MtrunA17_Chr1g0199321 31.973 294 186 6 108 399 343 624 1.08e-21 98.6
Msa0432140 MtrunA17_Chr6g0449461 30.822 292 181 8 111 394 3 281 2.33e-19 89.0
Msa0432140 MtrunA17_Chr3g0134761 27.063 303 201 9 110 405 51 340 9.73e-18 84.3
Msa0432140 MtrunA17_Chr3g0118001 26.299 308 208 6 89 394 196 486 1.74e-16 82.0
Msa0432140 MtrunA17_Chr2g0290151 27.517 298 202 6 99 394 164 449 8.60e-16 79.7
Msa0432140 MtrunA17_Chr2g0284461 26.102 295 186 8 113 394 399 674 1.24e-13 73.6
Msa0432140 MtrunA17_Chr5g0437411 27.444 266 164 6 89 334 367 623 7.64e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432140 AT4G31890.3 60.300 534 157 13 1 495 1 518 0.0 553
Msa0432140 AT4G31890.2 60.300 534 157 13 1 495 1 518 0.0 553
Msa0432140 AT4G31890.1 60.300 534 157 13 1 495 1 518 0.0 553
Msa0432140 AT2G25130.1 58.696 506 160 10 1 495 1 468 5.74e-179 510
Msa0432140 AT2G27430.1 31.877 389 233 8 110 495 79 438 1.24e-41 154
Msa0432140 AT2G23140.3 29.250 400 244 11 15 394 247 627 1.55e-30 125
Msa0432140 AT2G23140.5 29.250 400 244 11 15 394 247 627 1.55e-30 125
Msa0432140 AT2G23140.1 29.250 400 244 11 15 394 439 819 2.73e-30 125
Msa0432140 AT2G23140.2 29.250 400 244 11 15 394 436 816 3.10e-30 125
Msa0432140 AT2G23140.4 29.250 400 244 11 15 394 436 816 3.10e-30 125
Msa0432140 AT1G67530.2 30.142 282 177 6 124 397 440 709 5.84e-27 115
Msa0432140 AT1G67530.1 30.142 282 177 6 124 397 440 709 5.84e-27 115
Msa0432140 AT1G67530.4 30.142 282 177 6 124 397 440 709 5.84e-27 115
Msa0432140 AT1G24330.1 29.316 307 200 6 118 418 434 729 1.84e-25 110
Msa0432140 AT1G24330.2 29.316 307 200 6 118 418 434 729 1.84e-25 110
Msa0432140 AT3G46510.1 33.088 272 162 8 125 391 369 625 2.23e-25 110
Msa0432140 AT3G54790.2 30.282 284 184 7 113 394 441 712 3.08e-25 110
Msa0432140 AT5G67340.1 29.653 317 207 7 79 394 396 697 3.56e-25 109
Msa0432140 AT5G67340.2 29.653 317 207 7 79 394 396 697 3.56e-25 109
Msa0432140 AT3G54790.3 30.068 296 192 8 113 405 477 760 4.56e-25 109
Msa0432140 AT3G54790.1 30.068 296 192 8 113 405 477 760 4.56e-25 109
Msa0432140 AT2G28830.1 31.023 303 187 10 109 403 284 572 1.42e-24 107
Msa0432140 AT3G03440.1 26.829 369 231 10 110 470 66 403 2.10e-23 102
Msa0432140 AT1G23030.1 29.514 288 188 6 110 394 333 608 2.17e-22 101
Msa0432140 AT1G27910.1 25.627 359 224 10 93 423 403 746 9.51e-22 99.4
Msa0432140 AT1G71020.2 30.822 292 186 7 107 394 192 471 2.10e-21 97.4
Msa0432140 AT1G71020.1 30.822 292 186 7 107 394 340 619 2.84e-21 97.8
Msa0432140 AT3G01400.1 27.152 302 200 8 110 408 64 348 3.42e-20 92.4
Msa0432140 AT5G58680.1 29.963 267 166 7 124 388 77 324 1.08e-19 90.9
Msa0432140 AT3G54850.1 31.802 283 179 6 122 402 359 629 1.35e-19 92.4
Msa0432140 AT4G12710.1 30.928 291 184 5 112 394 49 330 1.47e-18 88.2
Msa0432140 AT5G42340.1 30.263 304 198 6 90 391 361 652 2.49e-18 88.6
Msa0432140 AT5G65200.1 29.044 272 174 6 132 394 248 509 9.72e-18 86.7
Msa0432140 AT4G16490.1 28.333 300 199 7 99 394 174 461 1.35e-16 82.8
Msa0432140 AT5G14510.1 30.075 266 170 8 135 394 24 279 4.01e-16 79.7
Msa0432140 AT5G62560.1 26.298 289 200 5 109 394 235 513 4.20e-15 78.2

Find 125 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAGAAGTAGTGCAATTT+TGG 0.164673 3_2:+84262523 None:intergenic
TAAGGATGCAATCACAATTT+TGG 0.171187 3_2:-84261143 Msa0432140:CDS
AAATTGCACTACTTCTTATT+TGG 0.174630 3_2:-84262520 Msa0432140:five_prime_UTR
GATTCTAACAAACCAATAAT+TGG 0.187713 3_2:-84261430 Msa0432140:CDS
GATAAAGGGAAGCAGGTTTC+TGG 0.201909 3_2:-84260920 Msa0432140:CDS
GACGAATATTTCATTTGTTT+TGG 0.222706 3_2:-84261287 Msa0432140:CDS
GCACCAGAGGATCCAATTAT+TGG 0.223709 3_2:+84261418 None:intergenic
AAAGCAGCGATTGTTAAAAT+TGG 0.251431 3_2:-84261553 Msa0432140:CDS
GAAGCCTTCTCTTGACATTC+AGG 0.257804 3_2:+84261094 None:intergenic
CCTTTCAATTCTGAGCAATT+TGG 0.260209 3_2:-84261203 Msa0432140:CDS
TATATCGCGCAGGCTGTATT+AGG 0.273715 3_2:+84260225 None:intergenic
GCTTAACTACATTGGTCTTT+TGG 0.284866 3_2:-84260558 Msa0432140:three_prime_UTR
TCAACTGCAATTCGTCAAAA+TGG 0.295980 3_2:+84260626 None:intergenic
GAAGTTCATCGGAGAGAAAA+AGG 0.302706 3_2:+84262395 None:intergenic
AGGAGGTAAAGAGTGTTTAA+TGG 0.305362 3_2:-84260816 Msa0432140:CDS
TGATTGTGACAGTGACATTA+AGG 0.308355 3_2:+84260197 None:intergenic
AAGTGCTGATTCAGTTTCTT+TGG 0.320135 3_2:-84260410 Msa0432140:three_prime_UTR
TCTAGTTTAAGTTTATCTTT+AGG 0.323762 3_2:-84260459 Msa0432140:three_prime_UTR
TGAGTCTTTGTGGCAAGTTT+TGG 0.352589 3_2:+84262489 None:intergenic
GGACAGAATTATAGCTGATA+TGG 0.360205 3_2:-84260261 Msa0432140:three_prime_UTR
CAACTGTGTGTGAGTCTTTG+TGG 0.367299 3_2:+84262479 None:intergenic
AAAAGCTATTAGTGCTGTTA+AGG 0.376170 3_2:-84261161 Msa0432140:CDS
GGCGGAGAAGCGGAAGTTAC+CGG 0.380244 3_2:+84262272 None:intergenic
TTTCCTTGGATTAAGTGCTT+TGG 0.382622 3_2:-84261452 Msa0432140:CDS
AAGTTAAACAAGATGCTCTT+CGG 0.386930 3_2:-84261336 Msa0432140:CDS
GAAGACGAAGAAGCACAAAT+AGG 0.399369 3_2:+84260857 None:intergenic
AAAACCCTGCTGTTTATTAG+TGG 0.399890 3_2:-84260153 Msa0432140:three_prime_UTR
AGAGGCTCCGCCGCAGCTTA+AGG 0.401079 3_2:+84262221 None:intergenic
GCAATTGTTGCAAATTTCCT+TGG 0.402106 3_2:-84261466 Msa0432140:CDS
GAGGCACACTCGCAATGCTC+GGG 0.403694 3_2:-84261918 Msa0432140:CDS
GGGCAATTTCTCCTCTCGTT+GGG 0.404224 3_2:-84261897 Msa0432140:CDS
AGAGAAGACGGAGAAGCTAT+TGG 0.413753 3_2:-84262109 Msa0432140:CDS
GGAGATGAAGCATGTGGTTA+AGG 0.413838 3_2:-84262022 Msa0432140:CDS
CACATAAAGCTTATGCTGAT+AGG 0.414828 3_2:-84261051 Msa0432140:CDS
TACAATTCCTGCTTCAATCA+TGG 0.419654 3_2:+84261024 None:intergenic
TGCGAGTGTGCCTCTCGCTT+CGG 0.424046 3_2:+84261927 None:intergenic
TTGCTTGAGCTGACGCTTGT+GGG 0.429303 3_2:-84260995 Msa0432140:CDS
AGAAGTGATGGTGGAAACTT+AGG 0.433937 3_2:-84260896 Msa0432140:CDS
ATAAAGGGAAGCAGGTTTCT+GGG 0.440773 3_2:-84260919 Msa0432140:CDS
GGGGCAATTTCTCCTCTCGT+TGG 0.443059 3_2:-84261898 Msa0432140:CDS
GACGAAGCGGCGAATGGCAG+CGG 0.449732 3_2:-84261980 Msa0432140:CDS
AGTTAAACAAGATGCTCTTC+GGG 0.453105 3_2:-84261335 Msa0432140:CDS
CTTCTTCGCGGTGGTAATGT+CGG 0.455884 3_2:+84262190 None:intergenic
ACCTTGTGTTGTTGATTCAT+CGG 0.459932 3_2:-84261497 Msa0432140:CDS
AAACCAATAATTGGATCCTC+TGG 0.464190 3_2:-84261421 Msa0432140:CDS
TTCTCCGCGTAACTCCTTCA+CGG 0.469664 3_2:+84262140 None:intergenic
TAGTGCCTTGGCACAGAAAA+GGG 0.470454 3_2:-84260972 Msa0432140:CDS
AATGTAGTTCATCAGAGAAA+TGG 0.472227 3_2:-84262364 Msa0432140:exon
AGAGGCACACTCGCAATGCT+CGG 0.474592 3_2:-84261919 Msa0432140:CDS
CTATATGCTTTACTCAATCT+CGG 0.476166 3_2:-84261835 Msa0432140:CDS
TAAAGAGTGTTTAATGGAGG+AGG 0.476887 3_2:-84260810 Msa0432140:CDS
GGTGGTATGGCATGAACAAT+TGG 0.478862 3_2:-84260132 Msa0432140:three_prime_UTR
AAAACTTGGCAATGGAGGTA+TGG 0.480124 3_2:+84260329 None:intergenic
GAAGAAGGAAGAGACATTAA+CGG 0.484776 3_2:-84262043 Msa0432140:CDS
TAGGCTAGATAAAGGGAAGC+AGG 0.493141 3_2:-84260927 Msa0432140:CDS
CAGAGCTAATTTCTTCTTCG+CGG 0.495177 3_2:+84262178 None:intergenic
ATTGGATCTTCTGAACATAC+AGG 0.495508 3_2:-84262091 Msa0432140:CDS
GACGCTTGTGGGTAGTGCCT+TGG 0.497097 3_2:-84260984 Msa0432140:CDS
TTTCAGAGTTCTAACTAGGA+AGG 0.499120 3_2:+84261390 None:intergenic
CAATTGAATCAACGTTGCTC+CGG 0.501968 3_2:+84262331 None:intergenic
GTAGTGCCTTGGCACAGAAA+AGG 0.502811 3_2:-84260973 Msa0432140:CDS
AATGATGCGGCGGAAGGATG+AGG 0.503235 3_2:+84262251 None:intergenic
GCTGTTTATTAGTGGTGGTA+TGG 0.512307 3_2:-84260145 Msa0432140:three_prime_UTR
ATTGCTTGAGCTGACGCTTG+TGG 0.515359 3_2:-84260996 Msa0432140:CDS
TTTGATATTGCGATAAATTG+CGG 0.526199 3_2:-84260282 Msa0432140:three_prime_UTR
TACCACCACTAATAAACAGC+AGG 0.526457 3_2:+84260148 None:intergenic
TTCAGAGTTCTAACTAGGAA+GGG 0.526621 3_2:+84261391 None:intergenic
GAGAGAAACTTACGCATCGT+TGG 0.530546 3_2:+84261807 None:intergenic
CGCAATATCAAAGATGTCCA+TGG 0.532402 3_2:+84260293 None:intergenic
TAATGTCACTGTCACAATCA+TGG 0.533954 3_2:-84260194 Msa0432140:three_prime_UTR
ACAACTAATCCATCCATCCT+CGG 0.534573 3_2:-84262456 Msa0432140:five_prime_UTR
AGGTAAAGAGTGTTTAATGG+AGG 0.535851 3_2:-84260813 Msa0432140:CDS
AATTAGCTCTGTCGCGTCGA+CGG 0.541624 3_2:-84262166 Msa0432140:CDS
GGAAGGATGAGGCGGAGAAG+CGG 0.545683 3_2:+84262262 None:intergenic
AGGCAAGCCATGATTGAAGC+AGG 0.546829 3_2:-84261031 Msa0432140:CDS
ACCCTGCTGTTTATTAGTGG+TGG 0.548154 3_2:-84260150 Msa0432140:three_prime_UTR
CAGGTTTCTGGGAGAAGTGA+TGG 0.551186 3_2:-84260908 Msa0432140:CDS
CCAATGTAGTTAAGCTGTTG+AGG 0.557105 3_2:+84260566 None:intergenic
CCTCAACAGCTTAACTACAT+TGG 0.561197 3_2:-84260566 Msa0432140:three_prime_UTR
GTCGAAAATGATGCGGCGGA+AGG 0.563722 3_2:+84262245 None:intergenic
CAACTAATCCATCCATCCTC+GGG 0.565375 3_2:-84262455 Msa0432140:five_prime_UTR
AGAAGTGCGAGAAGAGAAGA+CGG 0.565520 3_2:-84262121 Msa0432140:CDS
GTGGTATGGCATGAACAATT+GGG 0.567414 3_2:-84260131 Msa0432140:three_prime_UTR
CCAAATTGCTCAGAATTGAA+AGG 0.568365 3_2:+84261203 None:intergenic
TGTTGATTCATCGGTTTCTG+AGG 0.570602 3_2:-84261488 Msa0432140:CDS
AAATGCGGAATCGAAGAAGA+AGG 0.572172 3_2:-84262058 Msa0432140:CDS
CATGATGAAAATTGTCAAGA+GGG 0.572944 3_2:-84260723 Msa0432140:CDS
CGCGTCGACGGCAACCGTGA+AGG 0.579924 3_2:-84262154 Msa0432140:CDS
TGGCACAGAAAAGGGCATCA+AGG 0.580100 3_2:-84260964 Msa0432140:CDS
CTGCAATTCGTCAAAATGGA+AGG 0.580211 3_2:+84260630 None:intergenic
GAGAAATGGCTAAGTGTCAC+CGG 0.581139 3_2:-84262350 Msa0432140:exon
AGTGAAGCAAAACGCTCGGA+AGG 0.587883 3_2:+84260677 None:intergenic
AGACTCGACGAAGCGGCGAA+TGG 0.588292 3_2:-84261986 Msa0432140:CDS
AATCCAAAGCACTTAATCCA+AGG 0.592090 3_2:+84261449 None:intergenic
AGCTAATTTCTTCTTCGCGG+TGG 0.599852 3_2:+84262181 None:intergenic
AAAGAAACTGAATCAGCACT+TGG 0.603952 3_2:+84260412 None:intergenic
TTCACCTGAATGTCAAGAGA+AGG 0.606603 3_2:-84261098 Msa0432140:CDS
TTCGACGCCTTAAGCTGCGG+CGG 0.610282 3_2:-84262228 Msa0432140:CDS
AGTGAGTGAAGCAAAACGCT+CGG 0.610988 3_2:+84260673 None:intergenic
CAATTTGGTGTCGAGTCCCG+AGG 0.611390 3_2:-84261188 Msa0432140:CDS
ACATGATGAAAATTGTCAAG+AGG 0.618956 3_2:-84260724 Msa0432140:CDS
TTGCAGTTGATGGAGAGCAG+AGG 0.640662 3_2:-84260613 Msa0432140:three_prime_UTR
ATTGCACAGAAGAAGTTCAT+CGG 0.640779 3_2:+84262384 None:intergenic
TAGGAAGGGTATTGCACCAG+AGG 0.641343 3_2:+84261405 None:intergenic
GCGGAGAAGACTCGACGAAG+CGG 0.643214 3_2:-84261993 Msa0432140:CDS
GTAATGTCGGTGGTGTCGAG+AGG 0.644001 3_2:+84262203 None:intergenic
CTTCGCGGTGGTAATGTCGG+TGG 0.644496 3_2:+84262193 None:intergenic
GATAAACTCGATAGAAGACA+TGG 0.646492 3_2:-84261242 Msa0432140:CDS
AAAGAAGATTCCGAAGCGAG+AGG 0.648370 3_2:-84261937 Msa0432140:CDS
AGGCACACTCGCAATGCTCG+GGG 0.651896 3_2:-84261917 Msa0432140:CDS
GTTTCTGGGAGAAGTGATGG+TGG 0.653879 3_2:-84260905 Msa0432140:CDS
ACCGATGAATCAACAACACA+AGG 0.656484 3_2:+84261496 None:intergenic
AATTTGGTGTCGAGTCCCGA+GGG 0.656713 3_2:-84261187 Msa0432140:CDS
GATGCGGCGGAAGGATGAGG+CGG 0.658978 3_2:+84262254 None:intergenic
TTTGTGAAGACAGATGGAGG+AGG 0.662270 3_2:-84260833 Msa0432140:CDS
GAATCAAGCATCCCAACGAG+AGG 0.667890 3_2:+84261886 None:intergenic
ACCACCACTAATAAACAGCA+GGG 0.679712 3_2:+84260149 None:intergenic
CATGTGGTTAAGGATTTACG+CGG 0.683685 3_2:-84262012 Msa0432140:CDS
ACAGGTTCATGAAACAAATG+CGG 0.698371 3_2:-84262073 Msa0432140:CDS
AGGCGTCGAAAATGATGCGG+CGG 0.698501 3_2:+84262241 None:intergenic
TTAAGGCGTCGAAAATGATG+CGG 0.708242 3_2:+84262238 None:intergenic
GGAGAAGCGGAAGTTACCGG+CGG 0.717102 3_2:+84262275 None:intergenic
ATTAACGGAGATGAAGCATG+TGG 0.719445 3_2:-84262028 Msa0432140:CDS
GCAACCGTGAAGGAGTTACG+CGG 0.747970 3_2:-84262144 Msa0432140:CDS
TGTCACTGTCACAATCATGG+TGG 0.755714 3_2:-84260191 Msa0432140:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGAAAAATAATTTAATTTTT+AGG + chr3_2:84260221-84260240 None:intergenic 10.0%
!!! CGAAAAATAATTTAATTTTT+AGG + chr3_2:84260221-84260240 None:intergenic 10.0%
!!! AATTTAATTTTTAGGGATTT+TGG + chr3_2:84260213-84260232 None:intergenic 15.0%
!!! TTATCATATTCTTAATTTTG+TGG - chr3_2:84260955-84260974 Msa0432140:CDS 15.0%
!!! AATTTAATTTTTAGGGATTT+TGG + chr3_2:84260213-84260232 None:intergenic 15.0%
!!! TTATCATATTCTTAATTTTG+TGG - chr3_2:84260955-84260974 Msa0432140:CDS 15.0%
!! GAATATGATAAATTCATGAT+TGG + chr3_2:84260946-84260965 None:intergenic 20.0%
!! GATTAAACACAAAAATTTCA+CGG + chr3_2:84261035-84261054 None:intergenic 20.0%
!!! TTAATCTTTATTTGTTTCTG+TGG - chr3_2:84261049-84261068 Msa0432140:CDS 20.0%
!!! TTCATACATTTTGATGATTA+TGG - chr3_2:84261566-84261585 Msa0432140:intron 20.0%
!!! TCTAGTTTAAGTTTATCTTT+AGG - chr3_2:84262181-84262200 Msa0432140:CDS 20.0%
!!! ATAGTGTCTATTATTTTTCA+TGG + chr3_2:84262276-84262295 None:intergenic 20.0%
!! GAATATGATAAATTCATGAT+TGG + chr3_2:84260946-84260965 None:intergenic 20.0%
!! GATTAAACACAAAAATTTCA+CGG + chr3_2:84261035-84261054 None:intergenic 20.0%
!!! TTAATCTTTATTTGTTTCTG+TGG - chr3_2:84261049-84261068 Msa0432140:CDS 20.0%
!!! TTCATACATTTTGATGATTA+TGG - chr3_2:84261566-84261585 Msa0432140:intron 20.0%
!!! TCTAGTTTAAGTTTATCTTT+AGG - chr3_2:84262181-84262200 Msa0432140:CDS 20.0%
!!! ATAGTGTCTATTATTTTTCA+TGG + chr3_2:84262276-84262295 None:intergenic 20.0%
! AAATTGCACTACTTCTTATT+TGG - chr3_2:84260120-84260139 Msa0432140:three_prime_UTR 25.0%
! GATTCTAACAAACCAATAAT+TGG - chr3_2:84261210-84261229 Msa0432140:CDS 25.0%
!!! AATTTTTCAGAGTTCTAACT+AGG + chr3_2:84261257-84261276 None:intergenic 25.0%
!! GACGAATATTTCATTTGTTT+TGG - chr3_2:84261353-84261372 Msa0432140:CDS 25.0%
!!! ATTTGTTTTGGAAACTGATA+TGG - chr3_2:84261365-84261384 Msa0432140:CDS 25.0%
!!! TTTTGGTTGATGTATTGAAT+TGG - chr3_2:84261514-84261533 Msa0432140:CDS 25.0%
!!! AATGTTTTAGGCTAGATAAA+GGG - chr3_2:84261706-84261725 Msa0432140:intron 25.0%
!!! TTTTGTTATCACTGATGTAA+TGG - chr3_2:84262116-84262135 Msa0432140:CDS 25.0%
!!! TTTAGGTTCTTTTGTTGTTT+TGG - chr3_2:84262198-84262217 Msa0432140:CDS 25.0%
!!! TTAGGTTCTTTTGTTGTTTT+GGG - chr3_2:84262199-84262218 Msa0432140:CDS 25.0%
!!! CTATTATTTTTCATGGTTGA+TGG + chr3_2:84262269-84262288 None:intergenic 25.0%
! TGATTTAAAAAACTTGGCAA+TGG + chr3_2:84262322-84262341 None:intergenic 25.0%
!!! TTGCCAAGTTTTTTAAATCA+AGG - chr3_2:84262322-84262341 Msa0432140:CDS 25.0%
!!! TGCCAAGTTTTTTAAATCAA+GGG - chr3_2:84262323-84262342 Msa0432140:CDS 25.0%
! TTTGATATTGCGATAAATTG+CGG - chr3_2:84262358-84262377 Msa0432140:exon 25.0%
! AAATTGCACTACTTCTTATT+TGG - chr3_2:84260120-84260139 Msa0432140:three_prime_UTR 25.0%
! GATTCTAACAAACCAATAAT+TGG - chr3_2:84261210-84261229 Msa0432140:CDS 25.0%
!!! AATTTTTCAGAGTTCTAACT+AGG + chr3_2:84261257-84261276 None:intergenic 25.0%
!! GACGAATATTTCATTTGTTT+TGG - chr3_2:84261353-84261372 Msa0432140:CDS 25.0%
!!! ATTTGTTTTGGAAACTGATA+TGG - chr3_2:84261365-84261384 Msa0432140:CDS 25.0%
!!! TTTTGGTTGATGTATTGAAT+TGG - chr3_2:84261514-84261533 Msa0432140:CDS 25.0%
!!! AATGTTTTAGGCTAGATAAA+GGG - chr3_2:84261706-84261725 Msa0432140:intron 25.0%
!!! TTTTGTTATCACTGATGTAA+TGG - chr3_2:84262116-84262135 Msa0432140:CDS 25.0%
!!! TTTAGGTTCTTTTGTTGTTT+TGG - chr3_2:84262198-84262217 Msa0432140:CDS 25.0%
!!! TTAGGTTCTTTTGTTGTTTT+GGG - chr3_2:84262199-84262218 Msa0432140:CDS 25.0%
!!! CTATTATTTTTCATGGTTGA+TGG + chr3_2:84262269-84262288 None:intergenic 25.0%
! TGATTTAAAAAACTTGGCAA+TGG + chr3_2:84262322-84262341 None:intergenic 25.0%
!!! TTGCCAAGTTTTTTAAATCA+AGG - chr3_2:84262322-84262341 Msa0432140:CDS 25.0%
!!! TGCCAAGTTTTTTAAATCAA+GGG - chr3_2:84262323-84262342 Msa0432140:CDS 25.0%
! TTTGATATTGCGATAAATTG+CGG - chr3_2:84262358-84262377 Msa0432140:exon 25.0%
AATGTAGTTCATCAGAGAAA+TGG - chr3_2:84260276-84260295 Msa0432140:three_prime_UTR 30.0%
CTATATGCTTTACTCAATCT+CGG - chr3_2:84260805-84260824 Msa0432140:CDS 30.0%
AAAGCAGCGATTGTTAAAAT+TGG - chr3_2:84261087-84261106 Msa0432140:CDS 30.0%
AAGTTAAACAAGATGCTCTT+CGG - chr3_2:84261304-84261323 Msa0432140:CDS 30.0%
! AAAAGCTATTAGTGCTGTTA+AGG - chr3_2:84261479-84261498 Msa0432140:CDS 30.0%
! TAAGGATGCAATCACAATTT+TGG - chr3_2:84261497-84261516 Msa0432140:CDS 30.0%
! CAAGGATATTGCAATGTTTT+AGG - chr3_2:84261694-84261713 Msa0432140:intron 30.0%
!! CAATGTTTTAGGCTAGATAA+AGG - chr3_2:84261705-84261724 Msa0432140:intron 30.0%
ACATGATGAAAATTGTCAAG+AGG - chr3_2:84261916-84261935 Msa0432140:CDS 30.0%
CATGATGAAAATTGTCAAGA+GGG - chr3_2:84261917-84261936 Msa0432140:CDS 30.0%
TTTAAAAAACTTGGCAATGG+AGG + chr3_2:84262319-84262338 None:intergenic 30.0%
GACCCTTGATTTAAAAAACT+TGG + chr3_2:84262328-84262347 None:intergenic 30.0%
!!! TTTTTTAAATCAAGGGTCCA+TGG - chr3_2:84262330-84262349 Msa0432140:CDS 30.0%
AATGTAGTTCATCAGAGAAA+TGG - chr3_2:84260276-84260295 Msa0432140:three_prime_UTR 30.0%
CTATATGCTTTACTCAATCT+CGG - chr3_2:84260805-84260824 Msa0432140:CDS 30.0%
AAAGCAGCGATTGTTAAAAT+TGG - chr3_2:84261087-84261106 Msa0432140:CDS 30.0%
AAGTTAAACAAGATGCTCTT+CGG - chr3_2:84261304-84261323 Msa0432140:CDS 30.0%
! AAAAGCTATTAGTGCTGTTA+AGG - chr3_2:84261479-84261498 Msa0432140:CDS 30.0%
! TAAGGATGCAATCACAATTT+TGG - chr3_2:84261497-84261516 Msa0432140:CDS 30.0%
! CAAGGATATTGCAATGTTTT+AGG - chr3_2:84261694-84261713 Msa0432140:intron 30.0%
!! CAATGTTTTAGGCTAGATAA+AGG - chr3_2:84261705-84261724 Msa0432140:intron 30.0%
ACATGATGAAAATTGTCAAG+AGG - chr3_2:84261916-84261935 Msa0432140:CDS 30.0%
CATGATGAAAATTGTCAAGA+GGG - chr3_2:84261917-84261936 Msa0432140:CDS 30.0%
TTTAAAAAACTTGGCAATGG+AGG + chr3_2:84262319-84262338 None:intergenic 30.0%
GACCCTTGATTTAAAAAACT+TGG + chr3_2:84262328-84262347 None:intergenic 30.0%
!!! TTTTTTAAATCAAGGGTCCA+TGG - chr3_2:84262330-84262349 Msa0432140:CDS 30.0%
ATTGCACAGAAGAAGTTCAT+CGG + chr3_2:84260259-84260278 None:intergenic 35.0%
ATTGGATCTTCTGAACATAC+AGG - chr3_2:84260549-84260568 Msa0432140:three_prime_UTR 35.0%
ACAGGTTCATGAAACAAATG+CGG - chr3_2:84260567-84260586 Msa0432140:three_prime_UTR 35.0%
GAAGAAGGAAGAGACATTAA+CGG - chr3_2:84260597-84260616 Msa0432140:three_prime_UTR 35.0%
!! ACCTTGTGTTGTTGATTCAT+CGG - chr3_2:84261143-84261162 Msa0432140:CDS 35.0%
GCAATTGTTGCAAATTTCCT+TGG - chr3_2:84261174-84261193 Msa0432140:CDS 35.0%
TTTCCTTGGATTAAGTGCTT+TGG - chr3_2:84261188-84261207 Msa0432140:CDS 35.0%
! AATCCAAAGCACTTAATCCA+AGG + chr3_2:84261194-84261213 None:intergenic 35.0%
AAACCAATAATTGGATCCTC+TGG - chr3_2:84261219-84261238 Msa0432140:CDS 35.0%
! TTCAGAGTTCTAACTAGGAA+GGG + chr3_2:84261252-84261271 None:intergenic 35.0%
! TTTCAGAGTTCTAACTAGGA+AGG + chr3_2:84261253-84261272 None:intergenic 35.0%
AGTTAAACAAGATGCTCTTC+GGG - chr3_2:84261305-84261324 Msa0432140:CDS 35.0%
GATAAACTCGATAGAAGACA+TGG - chr3_2:84261398-84261417 Msa0432140:CDS 35.0%
CCAAATTGCTCAGAATTGAA+AGG + chr3_2:84261440-84261459 None:intergenic 35.0%
CCTTTCAATTCTGAGCAATT+TGG - chr3_2:84261437-84261456 Msa0432140:CDS 35.0%
! ACTAATAGCTTTTCTACCCT+CGG + chr3_2:84261472-84261491 None:intergenic 35.0%
CACATAAAGCTTATGCTGAT+AGG - chr3_2:84261589-84261608 Msa0432140:intron 35.0%
TACAATTCCTGCTTCAATCA+TGG + chr3_2:84261619-84261638 None:intergenic 35.0%
! TCTTCTTTTGTGAAGACAGA+TGG - chr3_2:84261801-84261820 Msa0432140:intron 35.0%
!! AGGAGGTAAAGAGTGTTTAA+TGG - chr3_2:84261824-84261843 Msa0432140:CDS 35.0%
!! AGGTAAAGAGTGTTTAATGG+AGG - chr3_2:84261827-84261846 Msa0432140:CDS 35.0%
!! TAAAGAGTGTTTAATGGAGG+AGG - chr3_2:84261830-84261849 Msa0432140:CDS 35.0%
TCAACTGCAATTCGTCAAAA+TGG + chr3_2:84262017-84262036 None:intergenic 35.0%
! TTTTGACGAATTGCAGTTGA+TGG - chr3_2:84262017-84262036 Msa0432140:CDS 35.0%
!!! GCTTAACTACATTGGTCTTT+TGG - chr3_2:84262082-84262101 Msa0432140:CDS 35.0%
AAAGAAACTGAATCAGCACT+TGG + chr3_2:84262231-84262250 None:intergenic 35.0%
!! AAGTGCTGATTCAGTTTCTT+TGG - chr3_2:84262230-84262249 Msa0432140:CDS 35.0%
GGACAGAATTATAGCTGATA+TGG - chr3_2:84262379-84262398 Msa0432140:five_prime_UTR 35.0%
!!! TAAGGTTTTTTATATCGCGC+AGG + chr3_2:84262428-84262447 None:intergenic 35.0%
TGATTGTGACAGTGACATTA+AGG + chr3_2:84262446-84262465 None:intergenic 35.0%
TAATGTCACTGTCACAATCA+TGG - chr3_2:84262446-84262465 Msa0432140:five_prime_UTR 35.0%
! AAAACCCTGCTGTTTATTAG+TGG - chr3_2:84262487-84262506 Msa0432140:five_prime_UTR 35.0%
ATTGCACAGAAGAAGTTCAT+CGG + chr3_2:84260259-84260278 None:intergenic 35.0%
ATTGGATCTTCTGAACATAC+AGG - chr3_2:84260549-84260568 Msa0432140:three_prime_UTR 35.0%
ACAGGTTCATGAAACAAATG+CGG - chr3_2:84260567-84260586 Msa0432140:three_prime_UTR 35.0%
GAAGAAGGAAGAGACATTAA+CGG - chr3_2:84260597-84260616 Msa0432140:three_prime_UTR 35.0%
!! ACCTTGTGTTGTTGATTCAT+CGG - chr3_2:84261143-84261162 Msa0432140:CDS 35.0%
GCAATTGTTGCAAATTTCCT+TGG - chr3_2:84261174-84261193 Msa0432140:CDS 35.0%
TTTCCTTGGATTAAGTGCTT+TGG - chr3_2:84261188-84261207 Msa0432140:CDS 35.0%
! AATCCAAAGCACTTAATCCA+AGG + chr3_2:84261194-84261213 None:intergenic 35.0%
AAACCAATAATTGGATCCTC+TGG - chr3_2:84261219-84261238 Msa0432140:CDS 35.0%
! TTCAGAGTTCTAACTAGGAA+GGG + chr3_2:84261252-84261271 None:intergenic 35.0%
! TTTCAGAGTTCTAACTAGGA+AGG + chr3_2:84261253-84261272 None:intergenic 35.0%
AGTTAAACAAGATGCTCTTC+GGG - chr3_2:84261305-84261324 Msa0432140:CDS 35.0%
GATAAACTCGATAGAAGACA+TGG - chr3_2:84261398-84261417 Msa0432140:CDS 35.0%
CCAAATTGCTCAGAATTGAA+AGG + chr3_2:84261440-84261459 None:intergenic 35.0%
CCTTTCAATTCTGAGCAATT+TGG - chr3_2:84261437-84261456 Msa0432140:CDS 35.0%
! ACTAATAGCTTTTCTACCCT+CGG + chr3_2:84261472-84261491 None:intergenic 35.0%
CACATAAAGCTTATGCTGAT+AGG - chr3_2:84261589-84261608 Msa0432140:intron 35.0%
TACAATTCCTGCTTCAATCA+TGG + chr3_2:84261619-84261638 None:intergenic 35.0%
! TCTTCTTTTGTGAAGACAGA+TGG - chr3_2:84261801-84261820 Msa0432140:intron 35.0%
!! AGGAGGTAAAGAGTGTTTAA+TGG - chr3_2:84261824-84261843 Msa0432140:CDS 35.0%
!! AGGTAAAGAGTGTTTAATGG+AGG - chr3_2:84261827-84261846 Msa0432140:CDS 35.0%
!! TAAAGAGTGTTTAATGGAGG+AGG - chr3_2:84261830-84261849 Msa0432140:CDS 35.0%
TCAACTGCAATTCGTCAAAA+TGG + chr3_2:84262017-84262036 None:intergenic 35.0%
! TTTTGACGAATTGCAGTTGA+TGG - chr3_2:84262017-84262036 Msa0432140:CDS 35.0%
!!! GCTTAACTACATTGGTCTTT+TGG - chr3_2:84262082-84262101 Msa0432140:CDS 35.0%
AAAGAAACTGAATCAGCACT+TGG + chr3_2:84262231-84262250 None:intergenic 35.0%
!! AAGTGCTGATTCAGTTTCTT+TGG - chr3_2:84262230-84262249 Msa0432140:CDS 35.0%
GGACAGAATTATAGCTGATA+TGG - chr3_2:84262379-84262398 Msa0432140:five_prime_UTR 35.0%
!!! TAAGGTTTTTTATATCGCGC+AGG + chr3_2:84262428-84262447 None:intergenic 35.0%
TGATTGTGACAGTGACATTA+AGG + chr3_2:84262446-84262465 None:intergenic 35.0%
TAATGTCACTGTCACAATCA+TGG - chr3_2:84262446-84262465 Msa0432140:five_prime_UTR 35.0%
! AAAACCCTGCTGTTTATTAG+TGG - chr3_2:84262487-84262506 Msa0432140:five_prime_UTR 35.0%
!!! TCTTTGTGGCAAGTTTTGGA+GGG + chr3_2:84260150-84260169 None:intergenic 40.0%
! TGAGTCTTTGTGGCAAGTTT+TGG + chr3_2:84260154-84260173 None:intergenic 40.0%
ACAACTAATCCATCCATCCT+CGG - chr3_2:84260184-84260203 Msa0432140:three_prime_UTR 40.0%
GAAGTTCATCGGAGAGAAAA+AGG + chr3_2:84260248-84260267 None:intergenic 40.0%
CAATTGAATCAACGTTGCTC+CGG + chr3_2:84260312-84260331 None:intergenic 40.0%
!! TTAAGGCGTCGAAAATGATG+CGG + chr3_2:84260405-84260424 None:intergenic 40.0%
CAGAGCTAATTTCTTCTTCG+CGG + chr3_2:84260465-84260484 None:intergenic 40.0%
AAATGCGGAATCGAAGAAGA+AGG - chr3_2:84260582-84260601 Msa0432140:three_prime_UTR 40.0%
ATTAACGGAGATGAAGCATG+TGG - chr3_2:84260612-84260631 Msa0432140:three_prime_UTR 40.0%
CATGTGGTTAAGGATTTACG+CGG - chr3_2:84260628-84260647 Msa0432140:exon 40.0%
ACCGATGAATCAACAACACA+AGG + chr3_2:84261147-84261166 None:intergenic 40.0%
!! TGTTGATTCATCGGTTTCTG+AGG - chr3_2:84261152-84261171 Msa0432140:CDS 40.0%
! CTAATAGCTTTTCTACCCTC+GGG + chr3_2:84261471-84261490 None:intergenic 40.0%
TTCACCTGAATGTCAAGAGA+AGG - chr3_2:84261542-84261561 Msa0432140:CDS 40.0%
ATAAAGGGAAGCAGGTTTCT+GGG - chr3_2:84261721-84261740 Msa0432140:intron 40.0%
!! AGAAGTGATGGTGGAAACTT+AGG - chr3_2:84261744-84261763 Msa0432140:intron 40.0%
! GAAGACGAAGAAGCACAAAT+AGG + chr3_2:84261786-84261805 None:intergenic 40.0%
! TCTTTTGTGAAGACAGATGG+AGG - chr3_2:84261804-84261823 Msa0432140:intron 40.0%
CTGCAATTCGTCAAAATGGA+AGG + chr3_2:84262013-84262032 None:intergenic 40.0%
CCAATGTAGTTAAGCTGTTG+AGG + chr3_2:84262077-84262096 None:intergenic 40.0%
CCTCAACAGCTTAACTACAT+TGG - chr3_2:84262074-84262093 Msa0432140:CDS 40.0%
AAAACTTGGCAATGGAGGTA+TGG + chr3_2:84262314-84262333 None:intergenic 40.0%
CGCAATATCAAAGATGTCCA+TGG + chr3_2:84262350-84262369 None:intergenic 40.0%
ACCACCACTAATAAACAGCA+GGG + chr3_2:84262494-84262513 None:intergenic 40.0%
TACCACCACTAATAAACAGC+AGG + chr3_2:84262495-84262514 None:intergenic 40.0%
GCTGTTTATTAGTGGTGGTA+TGG - chr3_2:84262495-84262514 Msa0432140:five_prime_UTR 40.0%
GTGGTATGGCATGAACAATT+GGG - chr3_2:84262509-84262528 Msa0432140:five_prime_UTR 40.0%
!!! TCTTTGTGGCAAGTTTTGGA+GGG + chr3_2:84260150-84260169 None:intergenic 40.0%
! TGAGTCTTTGTGGCAAGTTT+TGG + chr3_2:84260154-84260173 None:intergenic 40.0%
ACAACTAATCCATCCATCCT+CGG - chr3_2:84260184-84260203 Msa0432140:three_prime_UTR 40.0%
GAAGTTCATCGGAGAGAAAA+AGG + chr3_2:84260248-84260267 None:intergenic 40.0%
CAATTGAATCAACGTTGCTC+CGG + chr3_2:84260312-84260331 None:intergenic 40.0%
!! TTAAGGCGTCGAAAATGATG+CGG + chr3_2:84260405-84260424 None:intergenic 40.0%
CAGAGCTAATTTCTTCTTCG+CGG + chr3_2:84260465-84260484 None:intergenic 40.0%
AAATGCGGAATCGAAGAAGA+AGG - chr3_2:84260582-84260601 Msa0432140:three_prime_UTR 40.0%
ATTAACGGAGATGAAGCATG+TGG - chr3_2:84260612-84260631 Msa0432140:three_prime_UTR 40.0%
CATGTGGTTAAGGATTTACG+CGG - chr3_2:84260628-84260647 Msa0432140:exon 40.0%
ACCGATGAATCAACAACACA+AGG + chr3_2:84261147-84261166 None:intergenic 40.0%
!! TGTTGATTCATCGGTTTCTG+AGG - chr3_2:84261152-84261171 Msa0432140:CDS 40.0%
! CTAATAGCTTTTCTACCCTC+GGG + chr3_2:84261471-84261490 None:intergenic 40.0%
TTCACCTGAATGTCAAGAGA+AGG - chr3_2:84261542-84261561 Msa0432140:CDS 40.0%
ATAAAGGGAAGCAGGTTTCT+GGG - chr3_2:84261721-84261740 Msa0432140:intron 40.0%
!! AGAAGTGATGGTGGAAACTT+AGG - chr3_2:84261744-84261763 Msa0432140:intron 40.0%
! GAAGACGAAGAAGCACAAAT+AGG + chr3_2:84261786-84261805 None:intergenic 40.0%
! TCTTTTGTGAAGACAGATGG+AGG - chr3_2:84261804-84261823 Msa0432140:intron 40.0%
CTGCAATTCGTCAAAATGGA+AGG + chr3_2:84262013-84262032 None:intergenic 40.0%
CCAATGTAGTTAAGCTGTTG+AGG + chr3_2:84262077-84262096 None:intergenic 40.0%
CCTCAACAGCTTAACTACAT+TGG - chr3_2:84262074-84262093 Msa0432140:CDS 40.0%
AAAACTTGGCAATGGAGGTA+TGG + chr3_2:84262314-84262333 None:intergenic 40.0%
CGCAATATCAAAGATGTCCA+TGG + chr3_2:84262350-84262369 None:intergenic 40.0%
ACCACCACTAATAAACAGCA+GGG + chr3_2:84262494-84262513 None:intergenic 40.0%
TACCACCACTAATAAACAGC+AGG + chr3_2:84262495-84262514 None:intergenic 40.0%
GCTGTTTATTAGTGGTGGTA+TGG - chr3_2:84262495-84262514 Msa0432140:five_prime_UTR 40.0%
GTGGTATGGCATGAACAATT+GGG - chr3_2:84262509-84262528 Msa0432140:five_prime_UTR 40.0%
!! GTCTTTGTGGCAAGTTTTGG+AGG + chr3_2:84260151-84260170 None:intergenic 45.0%
CAACTGTGTGTGAGTCTTTG+TGG + chr3_2:84260164-84260183 None:intergenic 45.0%
CAACTAATCCATCCATCCTC+GGG - chr3_2:84260185-84260204 Msa0432140:three_prime_UTR 45.0%
!!! TTTAGGGATTTTGGTTCCCG+AGG + chr3_2:84260204-84260223 None:intergenic 45.0%
GAGAAATGGCTAAGTGTCAC+CGG - chr3_2:84260290-84260309 Msa0432140:three_prime_UTR 45.0%
! ATTTTCGACGCCTTAAGCTG+CGG - chr3_2:84260409-84260428 Msa0432140:three_prime_UTR 45.0%
AGCTAATTTCTTCTTCGCGG+TGG + chr3_2:84260462-84260481 None:intergenic 45.0%
! AGAAGTGCGAGAAGAGAAGA+CGG - chr3_2:84260519-84260538 Msa0432140:three_prime_UTR 45.0%
AGAGAAGACGGAGAAGCTAT+TGG - chr3_2:84260531-84260550 Msa0432140:three_prime_UTR 45.0%
GGAGATGAAGCATGTGGTTA+AGG - chr3_2:84260618-84260637 Msa0432140:three_prime_UTR 45.0%
AAAGAAGATTCCGAAGCGAG+AGG - chr3_2:84260703-84260722 Msa0432140:CDS 45.0%
GAGAGAAACTTACGCATCGT+TGG + chr3_2:84260836-84260855 None:intergenic 45.0%
GCACCAGAGGATCCAATTAT+TGG + chr3_2:84261225-84261244 None:intergenic 45.0%
GAAGCCTTCTCTTGACATTC+AGG + chr3_2:84261549-84261568 None:intergenic 45.0%
TAGTGCCTTGGCACAGAAAA+GGG - chr3_2:84261668-84261687 Msa0432140:intron 45.0%
TAGGCTAGATAAAGGGAAGC+AGG - chr3_2:84261713-84261732 Msa0432140:intron 45.0%
GATAAAGGGAAGCAGGTTTC+TGG - chr3_2:84261720-84261739 Msa0432140:intron 45.0%
TTTGTGAAGACAGATGGAGG+AGG - chr3_2:84261807-84261826 Msa0432140:intron 45.0%
AGTGAGTGAAGCAAAACGCT+CGG + chr3_2:84261970-84261989 None:intergenic 45.0%
TATATCGCGCAGGCTGTATT+AGG + chr3_2:84262418-84262437 None:intergenic 45.0%
TGTCACTGTCACAATCATGG+TGG - chr3_2:84262449-84262468 Msa0432140:five_prime_UTR 45.0%
! ACCCTGCTGTTTATTAGTGG+TGG - chr3_2:84262490-84262509 Msa0432140:five_prime_UTR 45.0%
GGTGGTATGGCATGAACAAT+TGG - chr3_2:84262508-84262527 Msa0432140:five_prime_UTR 45.0%
!! GTCTTTGTGGCAAGTTTTGG+AGG + chr3_2:84260151-84260170 None:intergenic 45.0%
CAACTGTGTGTGAGTCTTTG+TGG + chr3_2:84260164-84260183 None:intergenic 45.0%
CAACTAATCCATCCATCCTC+GGG - chr3_2:84260185-84260204 Msa0432140:three_prime_UTR 45.0%
!!! TTTAGGGATTTTGGTTCCCG+AGG + chr3_2:84260204-84260223 None:intergenic 45.0%
GAGAAATGGCTAAGTGTCAC+CGG - chr3_2:84260290-84260309 Msa0432140:three_prime_UTR 45.0%
! ATTTTCGACGCCTTAAGCTG+CGG - chr3_2:84260409-84260428 Msa0432140:three_prime_UTR 45.0%
AGCTAATTTCTTCTTCGCGG+TGG + chr3_2:84260462-84260481 None:intergenic 45.0%
! AGAAGTGCGAGAAGAGAAGA+CGG - chr3_2:84260519-84260538 Msa0432140:three_prime_UTR 45.0%
AGAGAAGACGGAGAAGCTAT+TGG - chr3_2:84260531-84260550 Msa0432140:three_prime_UTR 45.0%
GGAGATGAAGCATGTGGTTA+AGG - chr3_2:84260618-84260637 Msa0432140:three_prime_UTR 45.0%
AAAGAAGATTCCGAAGCGAG+AGG - chr3_2:84260703-84260722 Msa0432140:CDS 45.0%
GAGAGAAACTTACGCATCGT+TGG + chr3_2:84260836-84260855 None:intergenic 45.0%
GCACCAGAGGATCCAATTAT+TGG + chr3_2:84261225-84261244 None:intergenic 45.0%
GAAGCCTTCTCTTGACATTC+AGG + chr3_2:84261549-84261568 None:intergenic 45.0%
TAGTGCCTTGGCACAGAAAA+GGG - chr3_2:84261668-84261687 Msa0432140:intron 45.0%
TAGGCTAGATAAAGGGAAGC+AGG - chr3_2:84261713-84261732 Msa0432140:intron 45.0%
GATAAAGGGAAGCAGGTTTC+TGG - chr3_2:84261720-84261739 Msa0432140:intron 45.0%
TTTGTGAAGACAGATGGAGG+AGG - chr3_2:84261807-84261826 Msa0432140:intron 45.0%
AGTGAGTGAAGCAAAACGCT+CGG + chr3_2:84261970-84261989 None:intergenic 45.0%
TATATCGCGCAGGCTGTATT+AGG + chr3_2:84262418-84262437 None:intergenic 45.0%
TGTCACTGTCACAATCATGG+TGG - chr3_2:84262449-84262468 Msa0432140:five_prime_UTR 45.0%
! ACCCTGCTGTTTATTAGTGG+TGG - chr3_2:84262490-84262509 Msa0432140:five_prime_UTR 45.0%
GGTGGTATGGCATGAACAAT+TGG - chr3_2:84262508-84262527 Msa0432140:five_prime_UTR 45.0%
!!! GAAAAATAATTTAATTTTTA+GGG + chr3_2:84260220-84260239 None:intergenic 5.0%
!!! GAAAAATAATTTAATTTTTA+GGG + chr3_2:84260220-84260239 None:intergenic 5.0%
!!! TTTTGGTTCCCGAGGATGGA+TGG + chr3_2:84260196-84260215 None:intergenic 50.0%
! CGGTAGTGTTTTTCGCATGG+TGG + chr3_2:84260348-84260367 None:intergenic 50.0%
CATGCGAAAAACACTACCGC+CGG - chr3_2:84260349-84260368 Msa0432140:three_prime_UTR 50.0%
! CTTCTTCGCGGTGGTAATGT+CGG + chr3_2:84260453-84260472 None:intergenic 50.0%
!! AATTAGCTCTGTCGCGTCGA+CGG - chr3_2:84260474-84260493 Msa0432140:three_prime_UTR 50.0%
TTCTCCGCGTAACTCCTTCA+CGG + chr3_2:84260503-84260522 None:intergenic 50.0%
GGGCAATTTCTCCTCTCGTT+GGG - chr3_2:84260743-84260762 Msa0432140:CDS 50.0%
GAATCAAGCATCCCAACGAG+AGG + chr3_2:84260757-84260776 None:intergenic 50.0%
!! TAGGAAGGGTATTGCACCAG+AGG + chr3_2:84261238-84261257 None:intergenic 50.0%
!! AATTTGGTGTCGAGTCCCGA+GGG - chr3_2:84261453-84261472 Msa0432140:CDS 50.0%
AGGCAAGCCATGATTGAAGC+AGG - chr3_2:84261609-84261628 Msa0432140:intron 50.0%
ATTGCTTGAGCTGACGCTTG+TGG - chr3_2:84261644-84261663 Msa0432140:intron 50.0%
TTGCTTGAGCTGACGCTTGT+GGG - chr3_2:84261645-84261664 Msa0432140:intron 50.0%
GTAGTGCCTTGGCACAGAAA+AGG - chr3_2:84261667-84261686 Msa0432140:intron 50.0%
! TGATGCCCTTTTCTGTGCCA+AGG + chr3_2:84261676-84261695 None:intergenic 50.0%
!! TGGCACAGAAAAGGGCATCA+AGG - chr3_2:84261676-84261695 Msa0432140:intron 50.0%
! CAGGTTTCTGGGAGAAGTGA+TGG - chr3_2:84261732-84261751 Msa0432140:intron 50.0%
! GTTTCTGGGAGAAGTGATGG+TGG - chr3_2:84261735-84261754 Msa0432140:intron 50.0%
AGTGAAGCAAAACGCTCGGA+AGG + chr3_2:84261966-84261985 None:intergenic 50.0%
!! TTGCAGTTGATGGAGAGCAG+AGG - chr3_2:84262027-84262046 Msa0432140:CDS 50.0%
!!! TTTTGGTTCCCGAGGATGGA+TGG + chr3_2:84260196-84260215 None:intergenic 50.0%
! CGGTAGTGTTTTTCGCATGG+TGG + chr3_2:84260348-84260367 None:intergenic 50.0%
CATGCGAAAAACACTACCGC+CGG - chr3_2:84260349-84260368 Msa0432140:three_prime_UTR 50.0%
! CTTCTTCGCGGTGGTAATGT+CGG + chr3_2:84260453-84260472 None:intergenic 50.0%
!! AATTAGCTCTGTCGCGTCGA+CGG - chr3_2:84260474-84260493 Msa0432140:three_prime_UTR 50.0%
TTCTCCGCGTAACTCCTTCA+CGG + chr3_2:84260503-84260522 None:intergenic 50.0%
GGGCAATTTCTCCTCTCGTT+GGG - chr3_2:84260743-84260762 Msa0432140:CDS 50.0%
GAATCAAGCATCCCAACGAG+AGG + chr3_2:84260757-84260776 None:intergenic 50.0%
!! TAGGAAGGGTATTGCACCAG+AGG + chr3_2:84261238-84261257 None:intergenic 50.0%
!! AATTTGGTGTCGAGTCCCGA+GGG - chr3_2:84261453-84261472 Msa0432140:CDS 50.0%
AGGCAAGCCATGATTGAAGC+AGG - chr3_2:84261609-84261628 Msa0432140:intron 50.0%
ATTGCTTGAGCTGACGCTTG+TGG - chr3_2:84261644-84261663 Msa0432140:intron 50.0%
TTGCTTGAGCTGACGCTTGT+GGG - chr3_2:84261645-84261664 Msa0432140:intron 50.0%
GTAGTGCCTTGGCACAGAAA+AGG - chr3_2:84261667-84261686 Msa0432140:intron 50.0%
! TGATGCCCTTTTCTGTGCCA+AGG + chr3_2:84261676-84261695 None:intergenic 50.0%
!! TGGCACAGAAAAGGGCATCA+AGG - chr3_2:84261676-84261695 Msa0432140:intron 50.0%
! CAGGTTTCTGGGAGAAGTGA+TGG - chr3_2:84261732-84261751 Msa0432140:intron 50.0%
! GTTTCTGGGAGAAGTGATGG+TGG - chr3_2:84261735-84261754 Msa0432140:intron 50.0%
AGTGAAGCAAAACGCTCGGA+AGG + chr3_2:84261966-84261985 None:intergenic 50.0%
!! TTGCAGTTGATGGAGAGCAG+AGG - chr3_2:84262027-84262046 Msa0432140:CDS 50.0%
!!! GGGATTTTGGTTCCCGAGGA+TGG + chr3_2:84260200-84260219 None:intergenic 55.0%
! CGGCGGTAGTGTTTTTCGCA+TGG + chr3_2:84260351-84260370 None:intergenic 55.0%
AATGATGCGGCGGAAGGATG+AGG + chr3_2:84260392-84260411 None:intergenic 55.0%
GTCGAAAATGATGCGGCGGA+AGG + chr3_2:84260398-84260417 None:intergenic 55.0%
!! AGGCGTCGAAAATGATGCGG+CGG + chr3_2:84260402-84260421 None:intergenic 55.0%
! GTAATGTCGGTGGTGTCGAG+AGG + chr3_2:84260440-84260459 None:intergenic 55.0%
GCAACCGTGAAGGAGTTACG+CGG - chr3_2:84260496-84260515 Msa0432140:three_prime_UTR 55.0%
! AGAGGCACACTCGCAATGCT+CGG - chr3_2:84260721-84260740 Msa0432140:CDS 55.0%
GGGGCAATTTCTCCTCTCGT+TGG - chr3_2:84260742-84260761 Msa0432140:CDS 55.0%
!! CAATTTGGTGTCGAGTCCCG+AGG - chr3_2:84261452-84261471 Msa0432140:CDS 55.0%
!!! GGGATTTTGGTTCCCGAGGA+TGG + chr3_2:84260200-84260219 None:intergenic 55.0%
! CGGCGGTAGTGTTTTTCGCA+TGG + chr3_2:84260351-84260370 None:intergenic 55.0%
AATGATGCGGCGGAAGGATG+AGG + chr3_2:84260392-84260411 None:intergenic 55.0%
GTCGAAAATGATGCGGCGGA+AGG + chr3_2:84260398-84260417 None:intergenic 55.0%
!! AGGCGTCGAAAATGATGCGG+CGG + chr3_2:84260402-84260421 None:intergenic 55.0%
! GTAATGTCGGTGGTGTCGAG+AGG + chr3_2:84260440-84260459 None:intergenic 55.0%
GCAACCGTGAAGGAGTTACG+CGG - chr3_2:84260496-84260515 Msa0432140:three_prime_UTR 55.0%
! AGAGGCACACTCGCAATGCT+CGG - chr3_2:84260721-84260740 Msa0432140:CDS 55.0%
GGGGCAATTTCTCCTCTCGT+TGG - chr3_2:84260742-84260761 Msa0432140:CDS 55.0%
!! CAATTTGGTGTCGAGTCCCG+AGG - chr3_2:84261452-84261471 Msa0432140:CDS 55.0%
GGAGAAGCGGAAGTTACCGG+CGG + chr3_2:84260368-84260387 None:intergenic 60.0%
GGCGGAGAAGCGGAAGTTAC+CGG + chr3_2:84260371-84260390 None:intergenic 60.0%
GGAAGGATGAGGCGGAGAAG+CGG + chr3_2:84260381-84260400 None:intergenic 60.0%
TTCGACGCCTTAAGCTGCGG+CGG - chr3_2:84260412-84260431 Msa0432140:three_prime_UTR 60.0%
! CTTCGCGGTGGTAATGTCGG+TGG + chr3_2:84260450-84260469 None:intergenic 60.0%
GCGGAGAAGACTCGACGAAG+CGG - chr3_2:84260647-84260666 Msa0432140:CDS 60.0%
AGACTCGACGAAGCGGCGAA+TGG - chr3_2:84260654-84260673 Msa0432140:CDS 60.0%
TGCGAGTGTGCCTCTCGCTT+CGG + chr3_2:84260716-84260735 None:intergenic 60.0%
GAGGCACACTCGCAATGCTC+GGG - chr3_2:84260722-84260741 Msa0432140:CDS 60.0%
AGGCACACTCGCAATGCTCG+GGG - chr3_2:84260723-84260742 Msa0432140:CDS 60.0%
GACGCTTGTGGGTAGTGCCT+TGG - chr3_2:84261656-84261675 Msa0432140:intron 60.0%
GGAGAAGCGGAAGTTACCGG+CGG + chr3_2:84260368-84260387 None:intergenic 60.0%
GGCGGAGAAGCGGAAGTTAC+CGG + chr3_2:84260371-84260390 None:intergenic 60.0%
GGAAGGATGAGGCGGAGAAG+CGG + chr3_2:84260381-84260400 None:intergenic 60.0%
TTCGACGCCTTAAGCTGCGG+CGG - chr3_2:84260412-84260431 Msa0432140:three_prime_UTR 60.0%
! CTTCGCGGTGGTAATGTCGG+TGG + chr3_2:84260450-84260469 None:intergenic 60.0%
GCGGAGAAGACTCGACGAAG+CGG - chr3_2:84260647-84260666 Msa0432140:CDS 60.0%
AGACTCGACGAAGCGGCGAA+TGG - chr3_2:84260654-84260673 Msa0432140:CDS 60.0%
TGCGAGTGTGCCTCTCGCTT+CGG + chr3_2:84260716-84260735 None:intergenic 60.0%
GAGGCACACTCGCAATGCTC+GGG - chr3_2:84260722-84260741 Msa0432140:CDS 60.0%
AGGCACACTCGCAATGCTCG+GGG - chr3_2:84260723-84260742 Msa0432140:CDS 60.0%
GACGCTTGTGGGTAGTGCCT+TGG - chr3_2:84261656-84261675 Msa0432140:intron 60.0%
GATGCGGCGGAAGGATGAGG+CGG + chr3_2:84260389-84260408 None:intergenic 65.0%
AGAGGCTCCGCCGCAGCTTA+AGG + chr3_2:84260422-84260441 None:intergenic 65.0%
GACGAAGCGGCGAATGGCAG+CGG - chr3_2:84260660-84260679 Msa0432140:CDS 65.0%
GATGCGGCGGAAGGATGAGG+CGG + chr3_2:84260389-84260408 None:intergenic 65.0%
AGAGGCTCCGCCGCAGCTTA+AGG + chr3_2:84260422-84260441 None:intergenic 65.0%
GACGAAGCGGCGAATGGCAG+CGG - chr3_2:84260660-84260679 Msa0432140:CDS 65.0%
! CGCGTCGACGGCAACCGTGA+AGG - chr3_2:84260486-84260505 Msa0432140:three_prime_UTR 70.0%
! CGCGTCGACGGCAACCGTGA+AGG - chr3_2:84260486-84260505 Msa0432140:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84260118 84262544 84260118 ID=Msa0432140;Name=Msa0432140
chr3_2 mRNA 84260118 84262544 84260118 ID=Msa0432140-mRNA-1;Parent=Msa0432140;Name=Msa0432140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=177|1|1|1|1|1|2|522|495
chr3_2 exon 84260118 84261579 84260118 ID=Msa0432140-mRNA-1:exon:23768;Parent=Msa0432140-mRNA-1
chr3_2 exon 84261820 84262544 84261820 ID=Msa0432140-mRNA-1:exon:23767;Parent=Msa0432140-mRNA-1
chr3_2 five_prime_UTR 84262368 84262544 84262368 ID=Msa0432140-mRNA-1:five_prime_utr;Parent=Msa0432140-mRNA-1
chr3_2 CDS 84261820 84262367 84261820 ID=Msa0432140-mRNA-1:cds;Parent=Msa0432140-mRNA-1
chr3_2 CDS 84260640 84261579 84260640 ID=Msa0432140-mRNA-1:cds;Parent=Msa0432140-mRNA-1
chr3_2 three_prime_UTR 84260118 84260639 84260118 ID=Msa0432140-mRNA-1:three_prime_utr;Parent=Msa0432140-mRNA-1
Gene Sequence

>Msa0432140

ATGGCTAAGTGTCACCGGAGCAACGTTGATTCAATTGTTCTCGATCATCACCACCATGCGAAAAACACTACCGCCGGTAACTTCCGCTTCTCCGCCTCATCCTTCCGCCGCATCATTTTCGACGCCTTAAGCTGCGGCGGAGCCTCTCGACACCACCGACATTACCACCGCGAAGAAGAAATTAGCTCTGTCGCGTCGACGGCAACCGTGAAGGAGTTACGCGGAGAAGTGCGAGAAGAGAAGACGGAGAAGCTATTGGATCTTCTGAACATACAGGTTCATGAAACAAATGCGGAATCGAAGAAGAAGGAAGAGACATTAACGGAGATGAAGCATGTGGTTAAGGATTTACGCGGAGAAGACTCGACGAAGCGGCGAATGGCAGCGGCGAGAGTAAGATCACTGACGAAAGAAGATTCCGAAGCGAGAGGCACACTCGCAATGCTCGGGGCAATTTCTCCTCTCGTTGGGATGCTTGATTCAGAAGATCTTCATTCTCAGATTGATTCTCTATATGCTTTACTCAATCTCGGAATCGCCAACGATGCAAATAAAGCAGCGATTGTTAAAATTGGTGCTGTTCACAAGATGCTGAAGCTGATTGAATCACCTTGTGTTGTTGATTCATCGGTTTCTGAGGCAATTGTTGCAAATTTCCTTGGATTAAGTGCTTTGGATTCTAACAAACCAATAATTGGATCCTCTGGTGCAATACCCTTCCTAGTTAGAACTCTGAAAAATTTAGATAATAGTAGTAAAAGTAGTTCTCAAGTTAAACAAGATGCTCTTCGGGCTCTTTACAATCTATCGATCAATCAGACGAATATTTCATTTGTTTTGGAAACTGATATGGTCGCGTTTTTGATAAACTCGATAGAAGACATGGAAGTGAGTGAGAGAGTCCTTTCAATTCTGAGCAATTTGGTGTCGAGTCCCGAGGGTAGAAAAGCTATTAGTGCTGTTAAGGATGCAATCACAATTTTGGTTGATGTATTGAATTGGACAGATTCACCTGAATGTCAAGAGAAGGCTTCATACATTTTGATGATTATGGCACATAAAGCTTATGCTGATAGGCAAGCCATGATTGAAGCAGGAATTGTATCGTCATTGCTTGAGCTGACGCTTGTGGGTAGTGCCTTGGCACAGAAAAGGGCATCAAGGATATTGCAATGTTTTAGGCTAGATAAAGGGAAGCAGGTTTCTGGGAGAAGTGATGGTGGAAACTTAGGTTTAACTGTCTCTGCGCCTATTTGTGCTTCTTCGTCTTCTTTTGTGAAGACAGATGGAGGAGGTAAAGAGTGTTTAATGGAGGAGGTGAATATGATGAGTGATGAAAAGAAAGCAGTGAAGCAGTTAGTTCAGCAGAGCTTGCAGAACAACATGATGAAAATTGTCAAGAGGGCTAACTTGCGTCAAGATTTTGTTCCTTCCGAGCGTTTTGCTTCACTCACTTCAAGTTCGACATCTAAGAGCCTTCCATTTTGA

Protein sequence

>Msa0432140

MAKCHRSNVDSIVLDHHHHAKNTTAGNFRFSASSFRRIIFDALSCGGASRHHRHYHREEEISSVASTATVKELRGEVREEKTEKLLDLLNIQVHETNAESKKKEETLTEMKHVVKDLRGEDSTKRRMAAARVRSLTKEDSEARGTLAMLGAISPLVGMLDSEDLHSQIDSLYALLNLGIANDANKAAIVKIGAVHKMLKLIESPCVVDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLKNLDNSSKSSSQVKQDALRALYNLSINQTNISFVLETDMVAFLINSIEDMEVSERVLSILSNLVSSPEGRKAISAVKDAITILVDVLNWTDSPECQEKASYILMIMAHKAYADRQAMIEAGIVSSLLELTLVGSALAQKRASRILQCFRLDKGKQVSGRSDGGNLGLTVSAPICASSSSFVKTDGGGKECLMEEVNMMSDEKKAVKQLVQQSLQNNMMKIVKRANLRQDFVPSERFASLTSSSTSKSLPF*