AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520870 MtrunA17_Chr3g0136871 97.222 180 5 0 1 180 1 180 1.09e-127 356
Msa0520870 MtrunA17_Chr7g0256441 87.273 165 4 1 1 165 1 148 1.15e-99 284
Msa0520870 MtrunA17_Chr1g0150131 66.207 145 45 2 7 147 4 148 1.57e-65 199
Msa0520870 MtrunA17_Chr8g0360371 48.889 135 60 4 12 142 5 134 2.15e-36 128
Msa0520870 MtrunA17_Chr4g0041811 48.760 121 61 1 11 131 16 135 4.81e-35 122
Msa0520870 MtrunA17_Chr2g0317231 51.282 117 54 2 12 128 10 123 4.90e-34 127
Msa0520870 MtrunA17_Chr2g0331181 44.203 138 69 5 23 157 23 155 4.01e-33 116
Msa0520870 MtrunA17_Chr4g0039721 38.919 185 94 6 1 176 1 175 4.77e-33 116
Msa0520870 MtrunA17_Chr2g0324721 42.593 162 78 5 10 159 2 160 7.37e-33 116
Msa0520870 MtrunA17_Chr4g0062341 37.569 181 93 7 8 179 7 176 1.36e-31 112
Msa0520870 MtrunA17_Chr4g0062311 37.569 181 93 7 8 179 7 176 1.36e-31 112
Msa0520870 MtrunA17_Chr2g0319611 50.926 108 50 3 24 129 23 129 3.89e-31 113
Msa0520870 MtrunA17_Chr6g0458331 49.533 107 50 3 23 128 33 136 4.49e-29 105
Msa0520870 MtrunA17_Chr4g0040291 40.828 169 83 4 24 179 22 186 5.63e-29 105
Msa0520870 MtrunA17_Chr2g0324711 40.805 174 85 6 12 173 7 174 7.35e-28 107
Msa0520870 MtrunA17_Chr4g0073901 40.708 113 67 0 15 127 17 129 5.31e-27 100
Msa0520870 MtrunA17_Chr8g0385021 40.741 162 76 4 14 157 11 170 2.35e-26 101
Msa0520870 MtrunA17_Chr4g0073921 39.062 128 73 3 5 128 4 130 9.86e-24 94.4
Msa0520870 MtrunA17_Chr2g0323021 39.091 110 62 2 14 123 12 116 2.78e-23 92.0
Msa0520870 MtrunA17_Chr8g0385031 44.737 114 61 2 14 127 11 122 3.97e-23 93.2
Msa0520870 MtrunA17_Chr8g0385041 40.000 115 65 3 29 143 27 137 1.25e-21 89.4
Msa0520870 MtrunA17_Chr8g0335531 33.548 155 88 5 10 155 7 155 1.41e-19 81.6
Msa0520870 MtrunA17_Chr1g0188981 35.714 98 62 1 31 127 32 129 3.56e-19 80.5
Msa0520870 MtrunA17_Chr8g0387804 37.736 106 64 2 22 127 24 127 4.75e-19 78.6
Msa0520870 MtrunA17_Chr8g0335571 39.344 122 66 4 10 129 7 122 1.06e-18 79.7
Msa0520870 MtrunA17_Chr3g0127521 43.434 99 54 2 63 160 75 172 1.80e-18 80.5
Msa0520870 MtrunA17_Chr4g0064041 34.783 138 82 2 12 144 8 142 3.76e-18 80.5
Msa0520870 MtrunA17_Chr4g0064041 37.113 97 61 0 31 127 194 290 3.57e-17 77.8
Msa0520870 MtrunA17_Chr2g0306461 41.346 104 58 3 24 127 25 125 6.88e-17 74.7
Msa0520870 MtrunA17_Chr6g0481491 36.441 118 69 3 17 134 18 129 8.95e-17 74.7
Msa0520870 MtrunA17_Chr4g0033131 31.481 162 94 5 22 179 23 171 1.33e-16 73.6
Msa0520870 MtrunA17_Chr4g0033531 31.481 162 94 5 22 179 23 171 1.33e-16 73.6
Msa0520870 MtrunA17_Chr4g0064031 36.458 96 59 2 24 117 25 120 2.78e-16 72.4
Msa0520870 MtrunA17_Chr6g0453921 31.250 176 99 6 3 170 8 169 1.22e-15 70.9
Msa0520870 MtrunA17_Chr7g0253631 34.109 129 75 3 8 131 2 125 1.54e-15 72.0
Msa0520870 MtrunA17_Chr1g0196801 30.357 168 97 6 23 179 19 177 1.67e-15 70.5
Msa0520870 MtrunA17_Chr5g0394321 27.857 140 91 3 48 180 44 180 3.22e-15 70.1
Msa0520870 MtrunA17_Chr6g0459441 39.423 104 58 3 24 127 23 121 4.57e-15 69.3
Msa0520870 MtrunA17_Chr1g0205701 28.261 138 86 2 48 174 43 178 1.71e-14 68.2
Msa0520870 MtrunA17_Chr3g0132431 37.500 96 58 2 47 142 41 134 1.73e-14 68.2
Msa0520870 MtrunA17_Chr7g0253761 30.263 152 96 3 13 159 7 153 2.07e-14 67.8
Msa0520870 MtrunA17_Chr7g0253641 33.600 125 72 4 13 132 7 125 4.78e-14 67.8
Msa0520870 MtrunA17_Chr8g0379081 43.373 83 39 2 74 156 1 75 5.41e-14 65.5
Msa0520870 MtrunA17_Chr3g0132441 40.741 81 47 1 47 127 41 120 9.05e-14 66.2
Msa0520870 MtrunA17_Chr6g0483981 32.468 154 97 3 12 159 8 160 2.64e-13 67.0
Msa0520870 MtrunA17_Chr5g0440711 31.111 135 80 5 12 144 14 137 3.50e-12 61.2
Msa0520870 MtrunA17_Chr3g0132701 36.190 105 61 3 24 127 23 122 4.79e-12 62.0
Msa0520870 MtrunA17_Chr3g0132411 38.272 81 49 1 47 127 80 159 4.94e-12 61.2
Msa0520870 MtrunA17_Chr1g0185541 38.235 68 42 0 60 127 3 70 5.05e-12 58.9
Msa0520870 MtrunA17_Chr2g0289741 31.061 132 84 3 49 179 44 169 1.04e-11 60.5
Msa0520870 MtrunA17_Chr3g0132511 35.238 105 62 3 24 127 23 122 2.66e-11 60.1
Msa0520870 MtrunA17_Chr8g0380901 36.364 77 48 1 49 125 43 118 5.01e-11 57.4
Msa0520870 MtrunA17_Chr1g0211101 32.979 94 58 2 31 123 36 125 7.67e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520870 AT2G25060.1 55.828 163 69 2 11 172 15 175 3.40e-60 185
Msa0520870 AT4G31840.1 53.801 171 70 4 8 172 2 169 1.00e-56 176
Msa0520870 AT5G25090.1 46.667 180 85 3 6 174 4 183 5.75e-50 159
Msa0520870 AT4G30590.1 54.762 126 52 1 12 132 8 133 6.30e-47 152
Msa0520870 AT5G57920.1 53.719 121 55 1 22 141 18 138 6.63e-45 147
Msa0520870 AT5G57920.3 53.719 121 55 1 22 141 50 170 7.62e-45 147
Msa0520870 AT5G57920.2 53.782 119 54 1 24 141 19 137 2.64e-44 145
Msa0520870 AT2G23990.1 50.000 148 59 4 11 155 9 144 6.55e-41 137
Msa0520870 AT2G23990.2 44.311 167 59 5 11 155 9 163 1.85e-36 126
Msa0520870 AT1G48940.1 39.535 172 98 4 11 180 10 177 1.79e-32 115
Msa0520870 AT3G18590.1 49.580 119 55 3 12 128 12 127 4.58e-32 114
Msa0520870 AT3G20570.1 34.302 172 84 3 12 156 15 184 7.47e-31 111
Msa0520870 AT4G27520.1 43.919 148 70 3 12 159 16 150 4.14e-30 113
Msa0520870 AT5G53870.2 43.421 152 69 5 11 155 7 148 4.14e-29 110
Msa0520870 AT5G53870.1 43.421 152 69 5 11 155 7 148 5.21e-29 110
Msa0520870 AT5G14345.1 45.536 112 58 2 36 146 24 133 8.39e-28 102
Msa0520870 AT4G28365.1 37.342 158 85 6 12 158 11 165 7.01e-26 98.6
Msa0520870 AT4G32490.1 38.686 137 76 4 3 134 2 135 2.58e-25 97.8
Msa0520870 AT1G79800.1 43.810 105 55 3 25 128 32 133 6.86e-25 95.9
Msa0520870 AT1G64640.1 32.857 140 90 2 4 140 6 144 2.22e-21 86.7
Msa0520870 AT2G31050.1 36.029 136 83 2 10 145 11 142 2.20e-20 84.3
Msa0520870 AT2G32300.1 34.722 144 84 4 18 160 17 151 3.78e-19 82.4
Msa0520870 AT2G32300.2 34.722 144 84 4 18 160 47 181 6.14e-19 82.4
Msa0520870 AT2G26720.1 31.618 136 89 2 10 145 11 142 1.16e-18 80.1
Msa0520870 AT5G07475.1 29.412 187 114 7 6 180 3 183 1.88e-18 79.0
Msa0520870 AT1G72230.1 37.755 98 51 2 39 127 21 117 4.27e-15 70.1
Msa0520870 AT3G60270.1 36.364 99 58 2 31 129 29 122 1.58e-14 68.6
Msa0520870 AT3G17675.1 30.645 124 75 3 10 127 9 127 2.77e-14 66.6
Msa0520870 AT5G26330.1 32.558 86 58 0 49 134 43 128 1.00e-13 66.6
Msa0520870 AT2G27035.1 28.105 153 90 5 29 180 30 163 3.84e-13 64.3
Msa0520870 AT3G27200.1 38.095 84 50 2 46 128 40 122 1.27e-12 63.2
Msa0520870 AT3G60280.1 37.374 99 57 3 31 129 27 120 1.82e-12 63.5
Msa0520870 AT5G20230.1 30.172 116 75 2 31 141 28 142 3.22e-12 62.4
Msa0520870 AT2G44790.1 40.964 83 46 2 49 129 45 126 4.82e-12 62.4
Msa0520870 AT1G45063.2 32.031 128 82 3 2 128 4 127 9.04e-12 62.4
Msa0520870 AT1G45063.2 33.673 98 62 2 31 127 152 247 1.74e-11 61.6
Msa0520870 AT1G45063.1 32.031 128 82 3 2 128 4 127 1.47e-11 62.4
Msa0520870 AT1G45063.1 33.673 98 62 2 31 127 152 247 2.57e-11 61.6
Msa0520870 AT1G22480.1 39.024 82 49 1 54 135 41 121 4.20e-11 59.3

Find 60 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCACCGCACCTAATT+AGG 0.210319 3_4:-73396450 Msa0520870:exon
AACTGGACTTGTGACTGTTC+TGG 0.274010 3_4:-73396504 Msa0520870:CDS
TTGTTCTTGTTCCTTCTCTT+TGG 0.278533 3_4:-73397048 Msa0520870:CDS
AACTTCACTATATCCTAATT+AGG 0.307719 3_4:+73396437 None:intergenic
AATAATAACTTGCTTGATAT+AGG 0.319142 3_4:-73396292 Msa0520870:three_prime_UTR
ATTATTGTATTATTTATAGA+TGG 0.351268 3_4:+73397209 None:intergenic
GGGACTGTTGGCTATTTATG+TGG 0.381502 3_4:-73396483 Msa0520870:CDS
GCTCCACTGATGAAGTAAAA+TGG 0.384841 3_4:+73396674 None:intergenic
ACTGGACTTGTGACTGTTCT+GGG 0.401738 3_4:-73396503 Msa0520870:CDS
CTCTGCAGCTAAGGAACTAT+TGG 0.408413 3_4:-73397022 Msa0520870:CDS
TTTGCATTGATCTGGTTCCT+TGG 0.413913 3_4:+73397186 None:intergenic
ACCATTGAACATTACAATGA+TGG 0.414280 3_4:-73396728 Msa0520870:CDS
AGGGGTGGTTTGCATTGATC+TGG 0.415179 3_4:+73397178 None:intergenic
TTCAAAGTCGGCGATCATCT+TGG 0.440071 3_4:-73396922 Msa0520870:intron
TGTCACTTTGCAAGCACAAA+GGG 0.448828 3_4:+73397159 None:intergenic
AAGTTATTATTCATAAGCTT+TGG 0.459492 3_4:+73396304 None:intergenic
TACTTCATCAGTGGAGCAAA+GGG 0.460490 3_4:-73396668 Msa0520870:CDS
CCCATCATTGTAATGTTCAA+TGG 0.464260 3_4:+73396727 None:intergenic
GGACCTTCTTCCAACTCTGC+TGG 0.465938 3_4:+73396563 None:intergenic
AGTGCGCCGGTGTTGCGAAC+TGG 0.466338 3_4:-73396521 Msa0520870:CDS
CTTTGGTTTCTCTGCAGCTA+AGG 0.473136 3_4:-73397031 Msa0520870:CDS
CTGCTAGTTGGTGCAACAGC+TGG 0.474292 3_4:+73396542 None:intergenic
GGACTGTTGGCTATTTATGT+GGG 0.487905 3_4:-73396482 Msa0520870:CDS
AGTGAGTCTGCTTCAGATGA+TGG 0.493397 3_4:+73396970 None:intergenic
TGCACCATCTCCAGCAGAGT+TGG 0.499713 3_4:-73396573 Msa0520870:CDS
TCTTCCAACTCTGCTGGAGA+TGG 0.500018 3_4:+73396569 None:intergenic
TGTGACTGTTCTGGGACTGT+TGG 0.507080 3_4:-73396495 Msa0520870:CDS
AACTCTGCTGGAGATGGTGC+AGG 0.510903 3_4:+73396575 None:intergenic
TTTGCAGTTTGGAAATATGA+TGG 0.513645 3_4:-73396812 Msa0520870:intron
AGCAGACTCACTCAACCAAT+GGG 0.514967 3_4:-73396959 Msa0520870:CDS
AACACCGGCGCACTGCTAGT+TGG 0.529681 3_4:+73396530 None:intergenic
TCTCCAAAGAAAAGATCCAT+TGG 0.532263 3_4:-73396605 Msa0520870:CDS
CCATTGAACATTACAATGAT+GGG 0.540182 3_4:-73396727 Msa0520870:CDS
TTACTTCATCAGTGGAGCAA+AGG 0.544859 3_4:-73396669 Msa0520870:CDS
AAGCAGACTCACTCAACCAA+TGG 0.548958 3_4:-73396960 Msa0520870:CDS
TTCTTTCTGATAGCTGAATG+TGG 0.553596 3_4:+73397116 None:intergenic
GCAAAGGGACACTGTGAGCA+AGG 0.567702 3_4:-73396653 Msa0520870:CDS
CTGATGAAGTAAAATGGTCC+AGG 0.572076 3_4:+73396680 None:intergenic
ATAAATAATACAATAATCCA+AGG 0.577825 3_4:-73397203 Msa0520870:five_prime_UTR
CAGTTTGGAAATATGATGGT+GGG 0.580211 3_4:-73396808 Msa0520870:CDS
TGCACCAACTAGCAGTGCGC+CGG 0.584450 3_4:-73396534 Msa0520870:CDS
GAAAAGTCTCGTTTCAAAGT+CGG 0.587560 3_4:-73396934 Msa0520870:CDS
TCTCCAGCAGAGTTGGAAGA+AGG 0.588093 3_4:-73396566 Msa0520870:CDS
ACAAGTCCAGTTCGCAACAC+CGG 0.589779 3_4:+73396515 None:intergenic
TTGTCACTTTGCAAGCACAA+AGG 0.591024 3_4:+73397158 None:intergenic
TGGTGCAGGTGAAACTCCAA+TGG 0.600203 3_4:+73396589 None:intergenic
GCAGTTTGGAAATATGATGG+TGG 0.604799 3_4:-73396809 Msa0520870:intron
CACTATATCCTAATTAGGTG+CGG 0.608986 3_4:+73396442 None:intergenic
AGGCAAGATAGATGCATGGA+AGG 0.615286 3_4:-73396995 Msa0520870:CDS
CTGCAGAGAAACCAAAGAGA+AGG 0.616684 3_4:+73397037 None:intergenic
AAGGTAAAGCTAGACAGACC+TGG 0.622619 3_4:-73396698 Msa0520870:CDS
GCAGCTAAGGAACTATTGGT+CGG 0.634929 3_4:-73397018 Msa0520870:CDS
ACTTTGCAAGCACAAAGGGG+TGG 0.644733 3_4:+73397163 None:intergenic
AGTTCTTGAGAACACAGCCA+TGG 0.674329 3_4:+73397086 None:intergenic
TCGGAGGCAAGATAGATGCA+TGG 0.675253 3_4:-73396999 Msa0520870:CDS
AGGACAAAAGCTGATTGTGG+TGG 0.679977 3_4:-73396633 Msa0520870:CDS
GTCACTTTGCAAGCACAAAG+GGG 0.685393 3_4:+73397160 None:intergenic
GCTAAGGAACTATTGGTCGG+AGG 0.690687 3_4:-73397015 Msa0520870:CDS
GCAAGGACAAAAGCTGATTG+TGG 0.718198 3_4:-73396636 Msa0520870:CDS
TTACAATGATGGGAACACGA+AGG 0.756088 3_4:-73396717 Msa0520870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGTATTATTTATAGA+TGG + chr3_4:73396227-73396246 None:intergenic 10.0%
!! ATTATTGTATTATTTATAGA+TGG + chr3_4:73396227-73396246 None:intergenic 10.0%
!! ATAAATAATACAATAATCCA+AGG - chr3_4:73396230-73396249 Msa0520870:three_prime_UTR 15.0%
!! TATGAAAAATAACTTGATAT+AGG - chr3_4:73397203-73397222 Msa0520870:five_prime_UTR 15.0%
!! ATAAATAATACAATAATCCA+AGG - chr3_4:73396230-73396249 Msa0520870:three_prime_UTR 15.0%
!! TATGAAAAATAACTTGATAT+AGG - chr3_4:73397203-73397222 Msa0520870:five_prime_UTR 15.0%
!!! GATTCATTATTTTTTTCCAA+AGG - chr3_4:73397049-73397068 Msa0520870:CDS 20.0%
!!! ATATCAAGTTTTTATTCCTT+TGG + chr3_4:73397068-73397087 None:intergenic 20.0%
!! AAGGAATAAAAACTTGATAT+AGG - chr3_4:73397068-73397087 Msa0520870:CDS 20.0%
!!! AAAAAATAATGAAGGTATTC+AGG + chr3_4:73397109-73397128 None:intergenic 20.0%
!! AAGTTATTATTCATAAGCTT+TGG + chr3_4:73397132-73397151 None:intergenic 20.0%
!!! AATAATAACTTGCTTGATAT+AGG - chr3_4:73397141-73397160 Msa0520870:five_prime_UTR 20.0%
!!! AAGTTATTTTTCATAAGCTT+TGG + chr3_4:73397198-73397217 None:intergenic 20.0%
!!! GATTCATTATTTTTTTCCAA+AGG - chr3_4:73397049-73397068 Msa0520870:CDS 20.0%
!!! ATATCAAGTTTTTATTCCTT+TGG + chr3_4:73397068-73397087 None:intergenic 20.0%
!! AAGGAATAAAAACTTGATAT+AGG - chr3_4:73397068-73397087 Msa0520870:CDS 20.0%
!!! AAAAAATAATGAAGGTATTC+AGG + chr3_4:73397109-73397128 None:intergenic 20.0%
!! AAGTTATTATTCATAAGCTT+TGG + chr3_4:73397132-73397151 None:intergenic 20.0%
!!! AATAATAACTTGCTTGATAT+AGG - chr3_4:73397141-73397160 Msa0520870:five_prime_UTR 20.0%
!!! AAGTTATTTTTCATAAGCTT+TGG + chr3_4:73397198-73397217 None:intergenic 20.0%
! AACTTCACTATATCCTAATT+AGG + chr3_4:73396999-73397018 None:intergenic 25.0%
!!! AGCTTTGGAAAAAATAATGA+AGG + chr3_4:73397117-73397136 None:intergenic 25.0%
! AACTTCACTATATCCTAATT+AGG + chr3_4:73396999-73397018 None:intergenic 25.0%
!!! AGCTTTGGAAAAAATAATGA+AGG + chr3_4:73397117-73397136 None:intergenic 25.0%
!!! TTTACCTTTGTTTTGCAGTT+TGG - chr3_4:73396610-73396629 Msa0520870:CDS 30.0%
ATTTCCAAACTGCAAAACAA+AGG + chr3_4:73396617-73396636 None:intergenic 30.0%
TTTGCAGTTTGGAAATATGA+TGG - chr3_4:73396621-73396640 Msa0520870:CDS 30.0%
ACCATTGAACATTACAATGA+TGG - chr3_4:73396705-73396724 Msa0520870:CDS 30.0%
CCATTGAACATTACAATGAT+GGG - chr3_4:73396706-73396725 Msa0520870:CDS 30.0%
!! AGCTTTGGAAAAAACAATGA+AGG + chr3_4:73397183-73397202 None:intergenic 30.0%
!!! TTTACCTTTGTTTTGCAGTT+TGG - chr3_4:73396610-73396629 Msa0520870:CDS 30.0%
ATTTCCAAACTGCAAAACAA+AGG + chr3_4:73396617-73396636 None:intergenic 30.0%
TTTGCAGTTTGGAAATATGA+TGG - chr3_4:73396621-73396640 Msa0520870:CDS 30.0%
ACCATTGAACATTACAATGA+TGG - chr3_4:73396705-73396724 Msa0520870:CDS 30.0%
CCATTGAACATTACAATGAT+GGG - chr3_4:73396706-73396725 Msa0520870:CDS 30.0%
!! AGCTTTGGAAAAAACAATGA+AGG + chr3_4:73397183-73397202 None:intergenic 30.0%
TTCTTTCTGATAGCTGAATG+TGG + chr3_4:73396320-73396339 None:intergenic 35.0%
!! TCAGAAAGAAAAAAGCACCA+TGG - chr3_4:73396330-73396349 Msa0520870:three_prime_UTR 35.0%
TTGTTCTTGTTCCTTCTCTT+TGG - chr3_4:73396385-73396404 Msa0520870:three_prime_UTR 35.0%
GAAAAGTCTCGTTTCAAAGT+CGG - chr3_4:73396499-73396518 Msa0520870:CDS 35.0%
AGAAAAAGATGTGTCAGTGA+TGG + chr3_4:73396590-73396609 None:intergenic 35.0%
CAGTTTGGAAATATGATGGT+GGG - chr3_4:73396625-73396644 Msa0520870:CDS 35.0%
CCCATCATTGTAATGTTCAA+TGG + chr3_4:73396709-73396728 None:intergenic 35.0%
TCTCCAAAGAAAAGATCCAT+TGG - chr3_4:73396828-73396847 Msa0520870:intron 35.0%
! ACTCCAATGGATCTTTTCTT+TGG + chr3_4:73396834-73396853 None:intergenic 35.0%
CACTATATCCTAATTAGGTG+CGG + chr3_4:73396994-73397013 None:intergenic 35.0%
TTCTTTCTGATAGCTGAATG+TGG + chr3_4:73396320-73396339 None:intergenic 35.0%
!! TCAGAAAGAAAAAAGCACCA+TGG - chr3_4:73396330-73396349 Msa0520870:three_prime_UTR 35.0%
TTGTTCTTGTTCCTTCTCTT+TGG - chr3_4:73396385-73396404 Msa0520870:three_prime_UTR 35.0%
GAAAAGTCTCGTTTCAAAGT+CGG - chr3_4:73396499-73396518 Msa0520870:CDS 35.0%
AGAAAAAGATGTGTCAGTGA+TGG + chr3_4:73396590-73396609 None:intergenic 35.0%
CAGTTTGGAAATATGATGGT+GGG - chr3_4:73396625-73396644 Msa0520870:CDS 35.0%
CCCATCATTGTAATGTTCAA+TGG + chr3_4:73396709-73396728 None:intergenic 35.0%
TCTCCAAAGAAAAGATCCAT+TGG - chr3_4:73396828-73396847 Msa0520870:intron 35.0%
! ACTCCAATGGATCTTTTCTT+TGG + chr3_4:73396834-73396853 None:intergenic 35.0%
CACTATATCCTAATTAGGTG+CGG + chr3_4:73396994-73397013 None:intergenic 35.0%
! TTTGCATTGATCTGGTTCCT+TGG + chr3_4:73396250-73396269 None:intergenic 40.0%
!! TGTCACTTTGCAAGCACAAA+GGG + chr3_4:73396277-73396296 None:intergenic 40.0%
!! TTGTCACTTTGCAAGCACAA+AGG + chr3_4:73396278-73396297 None:intergenic 40.0%
GCAGTTTGGAAATATGATGG+TGG - chr3_4:73396624-73396643 Msa0520870:CDS 40.0%
! TTACAATGATGGGAACACGA+AGG - chr3_4:73396716-73396735 Msa0520870:CDS 40.0%
CTGATGAAGTAAAATGGTCC+AGG + chr3_4:73396756-73396775 None:intergenic 40.0%
! GGACCATTTTACTTCATCAG+TGG - chr3_4:73396756-73396775 Msa0520870:CDS 40.0%
GCTCCACTGATGAAGTAAAA+TGG + chr3_4:73396762-73396781 None:intergenic 40.0%
TTACTTCATCAGTGGAGCAA+AGG - chr3_4:73396764-73396783 Msa0520870:CDS 40.0%
TACTTCATCAGTGGAGCAAA+GGG - chr3_4:73396765-73396784 Msa0520870:CDS 40.0%
! GGACTGTTGGCTATTTATGT+GGG - chr3_4:73396951-73396970 Msa0520870:CDS 40.0%
ATGAATCACCGCACCTAATT+AGG - chr3_4:73396983-73397002 Msa0520870:CDS 40.0%
! TTTGCATTGATCTGGTTCCT+TGG + chr3_4:73396250-73396269 None:intergenic 40.0%
!! TGTCACTTTGCAAGCACAAA+GGG + chr3_4:73396277-73396296 None:intergenic 40.0%
!! TTGTCACTTTGCAAGCACAA+AGG + chr3_4:73396278-73396297 None:intergenic 40.0%
GCAGTTTGGAAATATGATGG+TGG - chr3_4:73396624-73396643 Msa0520870:CDS 40.0%
! TTACAATGATGGGAACACGA+AGG - chr3_4:73396716-73396735 Msa0520870:CDS 40.0%
CTGATGAAGTAAAATGGTCC+AGG + chr3_4:73396756-73396775 None:intergenic 40.0%
! GGACCATTTTACTTCATCAG+TGG - chr3_4:73396756-73396775 Msa0520870:CDS 40.0%
GCTCCACTGATGAAGTAAAA+TGG + chr3_4:73396762-73396781 None:intergenic 40.0%
TTACTTCATCAGTGGAGCAA+AGG - chr3_4:73396764-73396783 Msa0520870:CDS 40.0%
TACTTCATCAGTGGAGCAAA+GGG - chr3_4:73396765-73396784 Msa0520870:CDS 40.0%
! GGACTGTTGGCTATTTATGT+GGG - chr3_4:73396951-73396970 Msa0520870:CDS 40.0%
ATGAATCACCGCACCTAATT+AGG - chr3_4:73396983-73397002 Msa0520870:CDS 40.0%
! GTCACTTTGCAAGCACAAAG+GGG + chr3_4:73396276-73396295 None:intergenic 45.0%
AGTTCTTGAGAACACAGCCA+TGG + chr3_4:73396350-73396369 None:intergenic 45.0%
CTGCAGAGAAACCAAAGAGA+AGG + chr3_4:73396399-73396418 None:intergenic 45.0%
! CTTTGGTTTCTCTGCAGCTA+AGG - chr3_4:73396402-73396421 Msa0520870:three_prime_UTR 45.0%
CTCTGCAGCTAAGGAACTAT+TGG - chr3_4:73396411-73396430 Msa0520870:three_prime_UTR 45.0%
GCAGCTAAGGAACTATTGGT+CGG - chr3_4:73396415-73396434 Msa0520870:three_prime_UTR 45.0%
AGGCAAGATAGATGCATGGA+AGG - chr3_4:73396438-73396457 Msa0520870:three_prime_UTR 45.0%
AGTGAGTCTGCTTCAGATGA+TGG + chr3_4:73396466-73396485 None:intergenic 45.0%
AAGCAGACTCACTCAACCAA+TGG - chr3_4:73396473-73396492 Msa0520870:CDS 45.0%
AGCAGACTCACTCAACCAAT+GGG - chr3_4:73396474-73396493 Msa0520870:CDS 45.0%
! AACGAGACTTTTCTGCCCAT+TGG + chr3_4:73396492-73396511 None:intergenic 45.0%
TTCAAAGTCGGCGATCATCT+TGG - chr3_4:73396511-73396530 Msa0520870:CDS 45.0%
AAGGTAAAGCTAGACAGACC+TGG - chr3_4:73396735-73396754 Msa0520870:CDS 45.0%
GCAAGGACAAAAGCTGATTG+TGG - chr3_4:73396797-73396816 Msa0520870:CDS 45.0%
AGGACAAAAGCTGATTGTGG+TGG - chr3_4:73396800-73396819 Msa0520870:CDS 45.0%
AACTGGACTTGTGACTGTTC+TGG - chr3_4:73396929-73396948 Msa0520870:CDS 45.0%
ACTGGACTTGTGACTGTTCT+GGG - chr3_4:73396930-73396949 Msa0520870:CDS 45.0%
! GGGACTGTTGGCTATTTATG+TGG - chr3_4:73396950-73396969 Msa0520870:CDS 45.0%
! GTCACTTTGCAAGCACAAAG+GGG + chr3_4:73396276-73396295 None:intergenic 45.0%
AGTTCTTGAGAACACAGCCA+TGG + chr3_4:73396350-73396369 None:intergenic 45.0%
CTGCAGAGAAACCAAAGAGA+AGG + chr3_4:73396399-73396418 None:intergenic 45.0%
! CTTTGGTTTCTCTGCAGCTA+AGG - chr3_4:73396402-73396421 Msa0520870:three_prime_UTR 45.0%
CTCTGCAGCTAAGGAACTAT+TGG - chr3_4:73396411-73396430 Msa0520870:three_prime_UTR 45.0%
GCAGCTAAGGAACTATTGGT+CGG - chr3_4:73396415-73396434 Msa0520870:three_prime_UTR 45.0%
AGGCAAGATAGATGCATGGA+AGG - chr3_4:73396438-73396457 Msa0520870:three_prime_UTR 45.0%
AGTGAGTCTGCTTCAGATGA+TGG + chr3_4:73396466-73396485 None:intergenic 45.0%
AAGCAGACTCACTCAACCAA+TGG - chr3_4:73396473-73396492 Msa0520870:CDS 45.0%
AGCAGACTCACTCAACCAAT+GGG - chr3_4:73396474-73396493 Msa0520870:CDS 45.0%
! AACGAGACTTTTCTGCCCAT+TGG + chr3_4:73396492-73396511 None:intergenic 45.0%
TTCAAAGTCGGCGATCATCT+TGG - chr3_4:73396511-73396530 Msa0520870:CDS 45.0%
AAGGTAAAGCTAGACAGACC+TGG - chr3_4:73396735-73396754 Msa0520870:CDS 45.0%
GCAAGGACAAAAGCTGATTG+TGG - chr3_4:73396797-73396816 Msa0520870:CDS 45.0%
AGGACAAAAGCTGATTGTGG+TGG - chr3_4:73396800-73396819 Msa0520870:CDS 45.0%
AACTGGACTTGTGACTGTTC+TGG - chr3_4:73396929-73396948 Msa0520870:CDS 45.0%
ACTGGACTTGTGACTGTTCT+GGG - chr3_4:73396930-73396949 Msa0520870:CDS 45.0%
! GGGACTGTTGGCTATTTATG+TGG - chr3_4:73396950-73396969 Msa0520870:CDS 45.0%
! AGGGGTGGTTTGCATTGATC+TGG + chr3_4:73396258-73396277 None:intergenic 50.0%
ACTTTGCAAGCACAAAGGGG+TGG + chr3_4:73396273-73396292 None:intergenic 50.0%
GCTAAGGAACTATTGGTCGG+AGG - chr3_4:73396418-73396437 Msa0520870:three_prime_UTR 50.0%
TCGGAGGCAAGATAGATGCA+TGG - chr3_4:73396434-73396453 Msa0520870:three_prime_UTR 50.0%
TGGTGCAGGTGAAACTCCAA+TGG + chr3_4:73396847-73396866 None:intergenic 50.0%
TCTTCCAACTCTGCTGGAGA+TGG + chr3_4:73396867-73396886 None:intergenic 50.0%
TCTCCAGCAGAGTTGGAAGA+AGG - chr3_4:73396867-73396886 Msa0520870:intron 50.0%
ACAAGTCCAGTTCGCAACAC+CGG + chr3_4:73396921-73396940 None:intergenic 50.0%
!! TGTGACTGTTCTGGGACTGT+TGG - chr3_4:73396938-73396957 Msa0520870:CDS 50.0%
! AGGGGTGGTTTGCATTGATC+TGG + chr3_4:73396258-73396277 None:intergenic 50.0%
ACTTTGCAAGCACAAAGGGG+TGG + chr3_4:73396273-73396292 None:intergenic 50.0%
GCTAAGGAACTATTGGTCGG+AGG - chr3_4:73396418-73396437 Msa0520870:three_prime_UTR 50.0%
TCGGAGGCAAGATAGATGCA+TGG - chr3_4:73396434-73396453 Msa0520870:three_prime_UTR 50.0%
TGGTGCAGGTGAAACTCCAA+TGG + chr3_4:73396847-73396866 None:intergenic 50.0%
TCTTCCAACTCTGCTGGAGA+TGG + chr3_4:73396867-73396886 None:intergenic 50.0%
TCTCCAGCAGAGTTGGAAGA+AGG - chr3_4:73396867-73396886 Msa0520870:intron 50.0%
ACAAGTCCAGTTCGCAACAC+CGG + chr3_4:73396921-73396940 None:intergenic 50.0%
!! TGTGACTGTTCTGGGACTGT+TGG - chr3_4:73396938-73396957 Msa0520870:CDS 50.0%
GCAAAGGGACACTGTGAGCA+AGG - chr3_4:73396780-73396799 Msa0520870:CDS 55.0%
AACTCTGCTGGAGATGGTGC+AGG + chr3_4:73396861-73396880 None:intergenic 55.0%
TGCACCATCTCCAGCAGAGT+TGG - chr3_4:73396860-73396879 Msa0520870:intron 55.0%
GGACCTTCTTCCAACTCTGC+TGG + chr3_4:73396873-73396892 None:intergenic 55.0%
! CTGCTAGTTGGTGCAACAGC+TGG + chr3_4:73396894-73396913 None:intergenic 55.0%
GCAAAGGGACACTGTGAGCA+AGG - chr3_4:73396780-73396799 Msa0520870:CDS 55.0%
AACTCTGCTGGAGATGGTGC+AGG + chr3_4:73396861-73396880 None:intergenic 55.0%
TGCACCATCTCCAGCAGAGT+TGG - chr3_4:73396860-73396879 Msa0520870:intron 55.0%
GGACCTTCTTCCAACTCTGC+TGG + chr3_4:73396873-73396892 None:intergenic 55.0%
! CTGCTAGTTGGTGCAACAGC+TGG + chr3_4:73396894-73396913 None:intergenic 55.0%
TGCACCAACTAGCAGTGCGC+CGG - chr3_4:73396899-73396918 Msa0520870:intron 60.0%
AACACCGGCGCACTGCTAGT+TGG + chr3_4:73396906-73396925 None:intergenic 60.0%
TGCACCAACTAGCAGTGCGC+CGG - chr3_4:73396899-73396918 Msa0520870:intron 60.0%
AACACCGGCGCACTGCTAGT+TGG + chr3_4:73396906-73396925 None:intergenic 60.0%
!! AGTGCGCCGGTGTTGCGAAC+TGG - chr3_4:73396912-73396931 Msa0520870:intron 65.0%
!! AGTGCGCCGGTGTTGCGAAC+TGG - chr3_4:73396912-73396931 Msa0520870:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73396217 73397238 73396217 ID=Msa0520870;Name=Msa0520870
chr3_4 mRNA 73396217 73397238 73396217 ID=Msa0520870-mRNA-1;Parent=Msa0520870;Name=Msa0520870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|1|1|1|1|2|252|180
chr3_4 exon 73396217 73396827 73396217 ID=Msa0520870-mRNA-1:exon:20608;Parent=Msa0520870-mRNA-1
chr3_4 exon 73396923 73397238 73396923 ID=Msa0520870-mRNA-1:exon:20607;Parent=Msa0520870-mRNA-1
chr3_4 five_prime_UTR 73397107 73397238 73397107 ID=Msa0520870-mRNA-1:five_prime_utr;Parent=Msa0520870-mRNA-1
chr3_4 CDS 73396923 73397106 73396923 ID=Msa0520870-mRNA-1:cds;Parent=Msa0520870-mRNA-1
chr3_4 CDS 73396469 73396827 73396469 ID=Msa0520870-mRNA-1:cds;Parent=Msa0520870-mRNA-1
chr3_4 three_prime_UTR 73396217 73396468 73396217 ID=Msa0520870-mRNA-1:three_prime_utr;Parent=Msa0520870-mRNA-1
Gene Sequence

>Msa0520870

ATGGCTGTGTTCTCAAGAACTGCTTCTGCTTCTCTATTGTTCTTGTTCCTTCTCTTTGGTTTCTCTGCAGCTAAGGAACTATTGGTCGGAGGCAAGATAGATGCATGGAAGGTTCCATCATCTGAAGCAGACTCACTCAACCAATGGGCAGAAAAGTCTCGTTTCAAAGTCGGCGATCATCTTGTTTGGAAATATGATGGTGGGAAAGACTCAGTTTTGCAAGTAAACAAAGAAGATTATGCTAATTGCAACAGCTCAAACACCATTGAACATTACAATGATGGGAACACGAAGGTAAAGCTAGACAGACCTGGACCATTTTACTTCATCAGTGGAGCAAAGGGACACTGTGAGCAAGGACAAAAGCTGATTGTGGTGGTTATGTCTCCAAAGAAAAGATCCATTGGAGTTTCACCTGCACCATCTCCAGCAGAGTTGGAAGAAGGTCCAGCTGTTGCACCAACTAGCAGTGCGCCGGTGTTGCGAACTGGACTTGTGACTGTTCTGGGACTGTTGGCTATTTATGTGGGTTTTCTCATATGA

Protein sequence

>Msa0520870

MAVFSRTASASLLFLFLLFGFSAAKELLVGGKIDAWKVPSSEADSLNQWAEKSRFKVGDHLVWKYDGGKDSVLQVNKEDYANCNSSNTIEHYNDGNTKVKLDRPGPFYFISGAKGHCEQGQKLIVVVMSPKKRSIGVSPAPSPAELEEGPAVAPTSSAPVLRTGLVTVLGLLAIYVGFLI*