Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445010 | sp|Q6INS3|EMC2A_XENLA | 39.700 | 267 | 157 | 3 | 32 | 298 | 23 | 285 | 2.61e-58 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445010 | G7L1T5 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa1445010 | -0.819760 | 9.803980e-53 | -8.615850e-47 |
| Msa0011060 | Msa1445010 | -0.824255 | 8.911455e-54 | -8.615850e-47 |
| Msa0011100 | Msa1445010 | -0.812846 | 3.451561e-51 | -8.615850e-47 |
| Msa0011410 | Msa1445010 | -0.823194 | 1.579647e-53 | -8.615850e-47 |
| Msa0011440 | Msa1445010 | -0.809792 | 1.588368e-50 | -8.615850e-47 |
| Msa0017710 | Msa1445010 | 0.806002 | 1.016185e-49 | -8.615850e-47 |
| Msa0039750 | Msa1445010 | 0.803361 | 3.616443e-49 | -8.615850e-47 |
| Msa0050320 | Msa1445010 | -0.808879 | 2.493454e-50 | -8.615850e-47 |
| Msa0056230 | Msa1445010 | -0.816898 | 4.362093e-52 | -8.615850e-47 |
| Msa0074860 | Msa1445010 | -0.802500 | 5.448685e-49 | -8.615850e-47 |
| Msa0105140 | Msa1445010 | -0.815366 | 9.591178e-52 | -8.615850e-47 |
| Msa1350590 | Msa1445010 | -0.803391 | 3.564672e-49 | -8.615850e-47 |
| Msa1356100 | Msa1445010 | -0.807826 | 4.181619e-50 | -8.615850e-47 |
| Msa1361580 | Msa1445010 | -0.820121 | 8.109911e-53 | -8.615850e-47 |
| Msa1364690 | Msa1445010 | 0.802266 | 6.087809e-49 | -8.615850e-47 |
| Msa1366140 | Msa1445010 | -0.804129 | 2.504860e-49 | -8.615850e-47 |
| Msa1377980 | Msa1445010 | -0.824297 | 8.712211e-54 | -8.615850e-47 |
| Msa1380740 | Msa1445010 | 0.801837 | 7.458538e-49 | -8.615850e-47 |
| Msa1384410 | Msa1445010 | -0.810391 | 1.179735e-50 | -8.615850e-47 |
| Msa1386910 | Msa1445010 | -0.815967 | 7.047366e-52 | -8.615850e-47 |
| Msa1395380 | Msa1445010 | -0.822998 | 1.754284e-53 | -8.615850e-47 |
| Msa1408230 | Msa1445010 | -0.806107 | 9.657377e-50 | -8.615850e-47 |
| Msa1408280 | Msa1445010 | -0.823500 | 1.339838e-53 | -8.615850e-47 |
| Msa1415510 | Msa1445010 | -0.805468 | 1.315648e-49 | -8.615850e-47 |
| Msa1434300 | Msa1445010 | 0.810856 | 9.362421e-51 | -8.615850e-47 |
| Msa1437590 | Msa1445010 | 0.810203 | 1.295144e-50 | -8.615850e-47 |
| Msa1444130 | Msa1445010 | -0.811448 | 6.966132e-51 | -8.615850e-47 |
| Msa1444690 | Msa1445010 | -0.805782 | 1.130630e-49 | -8.615850e-47 |
| Msa1445010 | Msa1454300 | -0.824951 | 6.111702e-54 | -8.615850e-47 |
| Msa1445010 | Msa1459130 | -0.835895 | 1.285362e-56 | -8.615850e-47 |
| Msa0603310 | Msa1445010 | 0.804926 | 1.708441e-49 | -8.615850e-47 |
| Msa0605150 | Msa1445010 | -0.803211 | 3.885356e-49 | -8.615850e-47 |
| Msa0606600 | Msa1445010 | 0.804883 | 1.743871e-49 | -8.615850e-47 |
| Msa0610240 | Msa1445010 | -0.802040 | 6.775212e-49 | -8.615850e-47 |
| Msa0615070 | Msa1445010 | 0.812995 | 3.202205e-51 | -8.615850e-47 |
| Msa0616890 | Msa1445010 | -0.815486 | 9.020989e-52 | -8.615850e-47 |
| Msa0647300 | Msa1445010 | 0.809415 | 1.913510e-50 | -8.615850e-47 |
| Msa0654400 | Msa1445010 | -0.820467 | 6.756311e-53 | -8.615850e-47 |
| Msa0654500 | Msa1445010 | -0.811740 | 6.018264e-51 | -8.615850e-47 |
| Msa0676570 | Msa1445010 | -0.831713 | 1.428448e-55 | -8.615850e-47 |
| Msa0685810 | Msa1445010 | -0.807358 | 5.255788e-50 | -8.615850e-47 |
| Msa0685860 | Msa1445010 | -0.804886 | 1.741395e-49 | -8.615850e-47 |
| Msa0686830 | Msa1445010 | 0.817738 | 2.821455e-52 | -8.615850e-47 |
| Msa0690100 | Msa1445010 | -0.801855 | 7.395444e-49 | -8.615850e-47 |
| Msa0695250 | Msa1445010 | -0.803214 | 3.879656e-49 | -8.615850e-47 |
| Msa0701800 | Msa1445010 | -0.839398 | 1.623060e-57 | -8.615850e-47 |
| Msa0703430 | Msa1445010 | -0.801304 | 9.589939e-49 | -8.615850e-47 |
| Msa0707330 | Msa1445010 | 0.801965 | 7.018277e-49 | -8.615850e-47 |
| Msa0708680 | Msa1445010 | 0.800297 | 1.539805e-48 | -8.615850e-47 |
| Msa0708870 | Msa1445010 | -0.800438 | 1.441350e-48 | -8.615850e-47 |
| Msa0720490 | Msa1445010 | 0.816081 | 6.645646e-52 | -8.615850e-47 |
| Msa0732970 | Msa1445010 | 0.811139 | 8.127395e-51 | -8.615850e-47 |
| Msa0733240 | Msa1445010 | -0.801040 | 1.086227e-48 | -8.615850e-47 |
| Msa0738460 | Msa1445010 | -0.806156 | 9.432075e-50 | -8.615850e-47 |
| Msa0742690 | Msa1445010 | -0.810080 | 1.376789e-50 | -8.615850e-47 |
| Msa0750490 | Msa1445010 | -0.802357 | 5.829262e-49 | -8.615850e-47 |
| Msa0773960 | Msa1445010 | 0.811610 | 6.422230e-51 | -8.615850e-47 |
| Msa0779830 | Msa1445010 | -0.814769 | 1.301345e-51 | -8.615850e-47 |
| Msa0794900 | Msa1445010 | -0.809576 | 1.767020e-50 | -8.615850e-47 |
| Msa0829250 | Msa1445010 | -0.805035 | 1.621338e-49 | -8.615850e-47 |
| Msa0831460 | Msa1445010 | -0.801747 | 7.780482e-49 | -8.615850e-47 |
| Msa0841670 | Msa1445010 | 0.809785 | 1.594031e-50 | -8.615850e-47 |
| Msa0127350 | Msa1445010 | -0.806132 | 9.543196e-50 | -8.615850e-47 |
| Msa0141410 | Msa1445010 | 0.809845 | 1.547339e-50 | -8.615850e-47 |
| Msa0151380 | Msa1445010 | -0.809531 | 1.807088e-50 | -8.615850e-47 |
| Msa0154720 | Msa1445010 | -0.808281 | 3.345812e-50 | -8.615850e-47 |
| Msa0187660 | Msa1445010 | 0.999442 | 5.340975e-312 | -8.615850e-47 |
| Msa0189150 | Msa1445010 | -0.821670 | 3.569311e-53 | -8.615850e-47 |
| Msa0190890 | Msa1445010 | 0.802757 | 4.822273e-49 | -8.615850e-47 |
| Msa0212950 | Msa1445010 | -0.806520 | 7.905805e-50 | -8.615850e-47 |
| Msa0225070 | Msa1445010 | -0.830350 | 3.086044e-55 | -8.615850e-47 |
| Msa0225280 | Msa1445010 | -0.805838 | 1.100051e-49 | -8.615850e-47 |
| Msa0229350 | Msa1445010 | -0.813873 | 2.052714e-51 | -8.615850e-47 |
| Msa1238250 | Msa1445010 | 0.805093 | 1.576884e-49 | -8.615850e-47 |
| Msa1254910 | Msa1445010 | 0.819661 | 1.033064e-52 | -8.615850e-47 |
| Msa1256490 | Msa1445010 | -0.820291 | 7.414184e-53 | -8.615850e-47 |
| Msa1266120 | Msa1445010 | -0.805071 | 1.593064e-49 | -8.615850e-47 |
| Msa1279200 | Msa1445010 | -0.826158 | 3.162733e-54 | -8.615850e-47 |
| Msa1281300 | Msa1445010 | 0.810448 | 1.147161e-50 | -8.615850e-47 |
| Msa1291070 | Msa1445010 | -0.805503 | 1.293434e-49 | -8.615850e-47 |
| Msa1295210 | Msa1445010 | -0.802877 | 4.554109e-49 | -8.615850e-47 |
| Msa1296810 | Msa1445010 | -0.819447 | 1.156061e-52 | -8.615850e-47 |
| Msa1298480 | Msa1445010 | -0.818048 | 2.402445e-52 | -8.615850e-47 |
| Msa1303620 | Msa1445010 | -0.804984 | 1.661151e-49 | -8.615850e-47 |
| Msa1315880 | Msa1445010 | -0.807360 | 5.251439e-50 | -8.615850e-47 |
| Msa1319030 | Msa1445010 | 0.810371 | 1.191832e-50 | -8.615850e-47 |
| Msa1319190 | Msa1445010 | 0.804051 | 2.600055e-49 | -8.615850e-47 |
| Msa1328680 | Msa1445010 | -0.817086 | 3.956828e-52 | -8.615850e-47 |
| Msa1341710 | Msa1445010 | -0.809078 | 2.260518e-50 | -8.615850e-47 |
| Msa1342360 | Msa1445010 | -0.817992 | 2.472751e-52 | -8.615850e-47 |
| Msa0364910 | Msa1445010 | -0.807389 | 5.176393e-50 | -8.615850e-47 |
| Msa0373550 | Msa1445010 | 0.835255 | 1.865951e-56 | -8.615850e-47 |
| Msa0379480 | Msa1445010 | 0.801320 | 9.517863e-49 | -8.615850e-47 |
| Msa0387630 | Msa1445010 | -0.809486 | 1.848054e-50 | -8.615850e-47 |
| Msa0403740 | Msa1445010 | -0.818588 | 1.812662e-52 | -8.615850e-47 |
| Msa0412580 | Msa1445010 | -0.817394 | 3.373453e-52 | -8.615850e-47 |
| Msa0419150 | Msa1445010 | -0.812652 | 3.806523e-51 | -8.615850e-47 |
| Msa0422070 | Msa1445010 | 0.823291 | 1.499396e-53 | -8.615850e-47 |
| Msa0422230 | Msa1445010 | -0.819326 | 1.231799e-52 | -8.615850e-47 |
| Msa0427260 | Msa1445010 | -0.800081 | 1.703941e-48 | -8.615850e-47 |
| Msa0428720 | Msa1445010 | -0.811756 | 5.970593e-51 | -8.615850e-47 |
| Msa0433090 | Msa1445010 | 0.826085 | 3.291532e-54 | -8.615850e-47 |
| Msa0456450 | Msa1445010 | -0.818255 | 2.155868e-52 | -8.615850e-47 |
| Msa0457070 | Msa1445010 | -0.819710 | 1.006844e-52 | -8.615850e-47 |
| Msa0464980 | Msa1445010 | -0.814867 | 1.237708e-51 | -8.615850e-47 |
| Msa0468660 | Msa1445010 | 0.822473 | 2.324553e-53 | -8.615850e-47 |
| Msa0472820 | Msa1445010 | 0.808497 | 3.008496e-50 | -8.615850e-47 |
| Msa0998660 | Msa1445010 | -0.804326 | 2.279713e-49 | -8.615850e-47 |
| Msa1001120 | Msa1445010 | 0.822701 | 2.057192e-53 | -8.615850e-47 |
| Msa1002550 | Msa1445010 | -0.810224 | 1.282099e-50 | -8.615850e-47 |
| Msa1003920 | Msa1445010 | 0.801038 | 1.087217e-48 | -8.615850e-47 |
| Msa1014550 | Msa1445010 | -0.815319 | 9.825687e-52 | -8.615850e-47 |
| Msa1016580 | Msa1445010 | -0.813226 | 2.849956e-51 | -8.615850e-47 |
| Msa1025440 | Msa1445010 | -0.811325 | 7.406748e-51 | -8.615850e-47 |
| Msa1035050 | Msa1445010 | 0.816478 | 5.416641e-52 | -8.615850e-47 |
| Msa1039150 | Msa1445010 | -0.804515 | 2.082122e-49 | -8.615850e-47 |
| Msa1041250 | Msa1445010 | 0.803146 | 4.007018e-49 | -8.615850e-47 |
| Msa1055520 | Msa1445010 | -0.812285 | 4.578282e-51 | -8.615850e-47 |
| Msa1056890 | Msa1445010 | 0.808963 | 2.392232e-50 | -8.615850e-47 |
| Msa1075090 | Msa1445010 | 0.826961 | 2.034577e-54 | -8.615850e-47 |
| Msa1085820 | Msa1445010 | 0.813739 | 2.197941e-51 | -8.615850e-47 |
| Msa1088400 | Msa1445010 | -0.807496 | 4.913922e-50 | -8.615850e-47 |
| Msa1093190 | Msa1445010 | -0.817076 | 3.977218e-52 | -8.615850e-47 |
| Msa0242720 | Msa1445010 | 0.826204 | 3.083583e-54 | -8.615850e-47 |
| Msa0253230 | Msa1445010 | -0.808928 | 2.433876e-50 | -8.615850e-47 |
| Msa0261350 | Msa1445010 | -0.805801 | 1.120345e-49 | -8.615850e-47 |
| Msa0266140 | Msa1445010 | -0.820216 | 7.710672e-53 | -8.615850e-47 |
| Msa0267450 | Msa1445010 | -0.801360 | 9.342633e-49 | -8.615850e-47 |
| Msa0267510 | Msa1445010 | -0.804483 | 2.113837e-49 | -8.615850e-47 |
| Msa0270730 | Msa1445010 | -0.824328 | 8.564984e-54 | -8.615850e-47 |
| Msa0292060 | Msa1445010 | -0.804711 | 1.894573e-49 | -8.615850e-47 |
| Msa0299130 | Msa1445010 | -0.818022 | 2.434222e-52 | -8.615850e-47 |
| Msa0304060 | Msa1445010 | -0.802755 | 4.825620e-49 | -8.615850e-47 |
| Msa0328870 | Msa1445010 | 0.812689 | 3.737121e-51 | -8.615850e-47 |
| Msa0331070 | Msa1445010 | -0.805224 | 1.480258e-49 | -8.615850e-47 |
| Msa0337610 | Msa1445010 | -0.800227 | 1.590708e-48 | -8.615850e-47 |
| Msa0340700 | Msa1445010 | -0.809716 | 1.648922e-50 | -8.615850e-47 |
| Msa0343230 | Msa1445010 | -0.826763 | 2.269341e-54 | -8.615850e-47 |
| Msa0358470 | Msa1445010 | 0.826744 | 2.293035e-54 | -8.615850e-47 |
| Msa0363180 | Msa1445010 | -0.802357 | 5.829282e-49 | -8.615850e-47 |
| Msa0364030 | Msa1445010 | -0.819194 | 1.319813e-52 | -8.615850e-47 |
| Msa1115980 | Msa1445010 | 0.809265 | 2.060799e-50 | -8.615850e-47 |
| Msa1121720 | Msa1445010 | -0.807333 | 5.319678e-50 | -8.615850e-47 |
| Msa1124220 | Msa1445010 | 0.808705 | 2.715962e-50 | -8.615850e-47 |
| Msa1129240 | Msa1445010 | 0.920970 | 6.506317e-88 | -8.615850e-47 |
| Msa1130150 | Msa1445010 | -0.802452 | 5.573850e-49 | -8.615850e-47 |
| Msa1132880 | Msa1445010 | -0.801094 | 1.058881e-48 | -8.615850e-47 |
| Msa1143060 | Msa1445010 | -0.822126 | 2.799140e-53 | -8.615850e-47 |
| Msa1146980 | Msa1445010 | 0.831607 | 1.516852e-55 | -8.615850e-47 |
| Msa1150740 | Msa1445010 | 0.802446 | 5.588607e-49 | -8.615850e-47 |
| Msa1169590 | Msa1445010 | -0.801564 | 8.485204e-49 | -8.615850e-47 |
| Msa1172870 | Msa1445010 | 0.998884 | 2.105153e-280 | -8.615850e-47 |
| Msa1184680 | Msa1445010 | 0.806515 | 7.924284e-50 | -8.615850e-47 |
| Msa1186340 | Msa1445010 | 0.805193 | 1.502394e-49 | -8.615850e-47 |
| Msa1191350 | Msa1445010 | 0.808453 | 3.074634e-50 | -8.615850e-47 |
| Msa1191530 | Msa1445010 | -0.818598 | 1.803209e-52 | -8.615850e-47 |
| Msa1197720 | Msa1445010 | 0.816408 | 5.616272e-52 | -8.615850e-47 |
| Msa1199540 | Msa1445010 | -0.831684 | 1.452135e-55 | -8.615850e-47 |
| Msa1202470 | Msa1445010 | 0.836767 | 7.716038e-57 | -8.615850e-47 |
| Msa1204870 | Msa1445010 | -0.815738 | 7.927812e-52 | -8.615850e-47 |
| Msa1204900 | Msa1445010 | -0.825405 | 4.771888e-54 | -8.615850e-47 |
| Msa1205270 | Msa1445010 | -0.812230 | 4.706692e-51 | -8.615850e-47 |
| Msa1207660 | Msa1445010 | -0.800389 | 1.474940e-48 | -8.615850e-47 |
| Msa1209990 | Msa1445010 | -0.817837 | 2.680616e-52 | -8.615850e-47 |
| Msa1212150 | Msa1445010 | -0.817442 | 3.291238e-52 | -8.615850e-47 |
| Msa1212210 | Msa1445010 | -0.811215 | 7.826444e-51 | -8.615850e-47 |
| Msa0482830 | Msa1445010 | 0.805272 | 1.446348e-49 | -8.615850e-47 |
| Msa0490060 | Msa1445010 | 0.813519 | 2.456576e-51 | -8.615850e-47 |
| Msa0497680 | Msa1445010 | 0.810886 | 9.221335e-51 | -8.615850e-47 |
| Msa0514540 | Msa1445010 | 0.845282 | 4.475800e-59 | -8.615850e-47 |
| Msa0516000 | Msa1445010 | -0.801198 | 1.008230e-48 | -8.615850e-47 |
| Msa0524710 | Msa1445010 | 0.810441 | 1.150697e-50 | -8.615850e-47 |
| Msa0538050 | Msa1445010 | -0.823117 | 1.646224e-53 | -8.615850e-47 |
| Msa0557440 | Msa1445010 | -0.814196 | 1.742411e-51 | -8.615850e-47 |
| Msa0572730 | Msa1445010 | -0.827862 | 1.237158e-54 | -8.615850e-47 |
| Msa0580890 | Msa1445010 | -0.812095 | 5.037555e-51 | -8.615850e-47 |
| Msa0582270 | Msa1445010 | -0.820987 | 5.130457e-53 | -8.615850e-47 |
| Msa0583270 | Msa1445010 | -0.824316 | 8.622327e-54 | -8.615850e-47 |
| Msa0869320 | Msa1445010 | -0.810717 | 1.003020e-50 | -8.615850e-47 |
| Msa0870220 | Msa1445010 | -0.801036 | 1.088431e-48 | -8.615850e-47 |
| Msa0898830 | Msa1445010 | -0.813832 | 2.096213e-51 | -8.615850e-47 |
| Msa0901270 | Msa1445010 | 0.801481 | 8.821043e-49 | -8.615850e-47 |
| Msa0903460 | Msa1445010 | -0.804441 | 2.156732e-49 | -8.615850e-47 |
| Msa0934290 | Msa1445010 | -0.821598 | 3.708329e-53 | -8.615850e-47 |
| Msa0935930 | Msa1445010 | -0.805581 | 1.245829e-49 | -8.615850e-47 |
| Msa0945160 | Msa1445010 | -0.800486 | 1.409350e-48 | -8.615850e-47 |
| Msa0947550 | Msa1445010 | -0.818229 | 2.185972e-52 | -8.615850e-47 |
| Msa0967900 | Msa1445010 | -0.815651 | 8.288207e-52 | -8.615850e-47 |
| Msa0968060 | Msa1445010 | -0.801252 | 9.830864e-49 | -8.615850e-47 |
| Msa0971780 | Msa1445010 | -0.821478 | 3.952010e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445010 | MtrunA17_Chr7g0273911 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445010 | AT3G04830.1 | 77.228 | 303 | 67 | 1 | 1 | 301 | 1 | 303 | 3.20e-174 | 484 |
| Msa1445010 | AT5G28220.1 | 75.748 | 301 | 70 | 1 | 1 | 298 | 14 | 314 | 4.41e-170 | 474 |
| Msa1445010 | AT3G04830.2 | 76.568 | 303 | 65 | 2 | 1 | 301 | 1 | 299 | 8.69e-170 | 473 |
Find 81 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGTTGTTATTGTTAAT+TGG | 0.183627 | tig0030876:-36468 | None:intergenic |
| AAGGCACAAGGCAATATTTC+TGG | 0.195163 | tig0030876:+38666 | Msa1445010:CDS |
| GATACCATCGGCGCCGAGTT+TGG | 0.277168 | tig0030876:-36726 | None:intergenic |
| CATAGTATTTCTTGGCAGTT+TGG | 0.300310 | tig0030876:-39291 | None:intergenic |
| AAAAGCGTACTCAAGCCTTT+TGG | 0.323791 | tig0030876:+38169 | Msa1445010:CDS |
| ATTGAAGAATCTAGAAATTC+AGG | 0.329036 | tig0030876:+36583 | Msa1445010:CDS |
| TGCTTGAAGCAAAAGGTTCC+TGG | 0.339375 | tig0030876:+38135 | Msa1445010:CDS |
| GCATCCACTATTGACTTAAC+TGG | 0.339789 | tig0030876:+39313 | Msa1445010:CDS |
| AGTGGATGCATAGTATTTCT+TGG | 0.360041 | tig0030876:-39299 | None:intergenic |
| ATAATCGATTTGTTGTTGTT+TGG | 0.363103 | tig0030876:+36515 | Msa1445010:five_prime_UTR |
| GGCTCTTCGGAAGAGGTTCC+CGG | 0.373643 | tig0030876:+37473 | Msa1445010:CDS |
| GTAAGTTGAGGAAGCTTGTC+AGG | 0.381715 | tig0030876:-39638 | None:intergenic |
| TTGTACAGATCATCCATAAA+AGG | 0.385579 | tig0030876:+38628 | Msa1445010:intron |
| GCTATTGCACAACTTACAAA+AGG | 0.390284 | tig0030876:+39533 | Msa1445010:CDS |
| GCCGAGTTTGGATCGGAGTT+TGG | 0.396111 | tig0030876:-36714 | None:intergenic |
| CGACAATGTTAAACTCTTCA+AGG | 0.399413 | tig0030876:-39666 | None:intergenic |
| GTAATCCTTCTCCAACGCTT+TGG | 0.411068 | tig0030876:-39603 | None:intergenic |
| CTAGAAATTCAGGTCGATAA+TGG | 0.415655 | tig0030876:+36593 | Msa1445010:CDS |
| TAATGGTGGCGGAGGAGCTT+GGG | 0.434613 | tig0030876:+36610 | Msa1445010:CDS |
| ATATTTCTGGGGCTATTGAA+TGG | 0.440932 | tig0030876:+38679 | Msa1445010:CDS |
| AGGCACAAGGCAATATTTCT+GGG | 0.444178 | tig0030876:+38667 | Msa1445010:CDS |
| AGTGATAGTGTGTGCGGTGC+TGG | 0.445537 | tig0030876:+36428 | Msa1445010:five_prime_UTR |
| TGCCAGGTACTTTATACGCT+TGG | 0.459506 | tig0030876:+39253 | Msa1445010:intron |
| AGAATGGACTTTGTATGAGC+AGG | 0.460189 | tig0030876:+36861 | Msa1445010:intron |
| ATACACTGACAACATGCATT+AGG | 0.460351 | tig0030876:-39925 | None:intergenic |
| AGCAAAAGGTTCCTGGGAAA+AGG | 0.464783 | tig0030876:+38142 | Msa1445010:CDS |
| TCAATGTCTTGATGTTGCTC+AGG | 0.464948 | tig0030876:+36906 | Msa1445010:CDS |
| CCATAAAAGGAGGGTGGCTA+TGG | 0.465139 | tig0030876:+38641 | Msa1445010:CDS |
| ACTAATTATTACAGGAAGGC+TGG | 0.465186 | tig0030876:+38103 | Msa1445010:intron |
| TCGATTATCGCTGGCCGCAC+GGG | 0.471016 | tig0030876:-36500 | None:intergenic |
| CAGGTACTTTATACGCTTGG+TGG | 0.479808 | tig0030876:+39256 | Msa1445010:intron |
| AGGACTGCACAAAGGCTCTT+CGG | 0.483997 | tig0030876:+37460 | Msa1445010:intron |
| ATCGATTATCGCTGGCCGCA+CGG | 0.490206 | tig0030876:-36501 | None:intergenic |
| ATATACTAGTAGTAGCGTAT+AGG | 0.490569 | tig0030876:+36401 | Msa1445010:five_prime_UTR |
| ATCTGTGAATTCAGCAAAGA+TGG | 0.496369 | tig0030876:+36538 | Msa1445010:exon |
| GCCTCCAGTTAAGTCAATAG+TGG | 0.499666 | tig0030876:-39317 | None:intergenic |
| GCAGGTTGCAGTTGCTGCTA+TGG | 0.502649 | tig0030876:+36879 | Msa1445010:CDS |
| ATAATGGTGGCGGAGGAGCT+TGG | 0.516076 | tig0030876:+36609 | Msa1445010:CDS |
| CAAGAGGATTGTCCTCCAAA+AGG | 0.518847 | tig0030876:-38184 | None:intergenic |
| AGTGAGTTTACTTGATCAAG+AGG | 0.519735 | tig0030876:-38200 | None:intergenic |
| GCATATGCTAAGTGATAAAG+TGG | 0.521109 | tig0030876:-39055 | None:intergenic |
| GCACAAAGGCTCTTCGGAAG+AGG | 0.521348 | tig0030876:+37466 | Msa1445010:CDS |
| AGCTCTCTTCGGTATATGCT+TGG | 0.521948 | tig0030876:+39351 | Msa1445010:CDS |
| GCTTGAAGCAAAAGGTTCCT+GGG | 0.534662 | tig0030876:+38136 | Msa1445010:CDS |
| GAGTTTGGAATCATTCAAGA+TGG | 0.538373 | tig0030876:-36699 | None:intergenic |
| AAGAATACCAGAGCTCTCTT+CGG | 0.539836 | tig0030876:+39340 | Msa1445010:CDS |
| GCAATGTTGCTTGAAGCAAA+AGG | 0.543383 | tig0030876:+38128 | Msa1445010:CDS |
| CGATCCAAACTCGGCGCCGA+TGG | 0.544519 | tig0030876:+36722 | Msa1445010:CDS |
| TTCAAGGCAGTTGTAAGTTG+AGG | 0.545844 | tig0030876:-39650 | None:intergenic |
| ATCTCTAGCAGCCAAAGCGT+TGG | 0.547628 | tig0030876:+39592 | Msa1445010:CDS |
| GCATATACCGAAGAGAGCTC+TGG | 0.553907 | tig0030876:-39347 | None:intergenic |
| AAGAACAAGGAAGATAAAGA+AGG | 0.555037 | tig0030876:+39557 | Msa1445010:CDS |
| TCCAAACTCCGATCCAAACT+CGG | 0.556249 | tig0030876:+36713 | Msa1445010:CDS |
| AGACAAATATTTATTACCGA+AGG | 0.556697 | tig0030876:-39847 | None:intergenic |
| TCATGGCAGATCACGATGCA+TGG | 0.557684 | tig0030876:+38841 | Msa1445010:CDS |
| TTCCCTCGTCAGAAAACTCA+AGG | 0.558152 | tig0030876:+36640 | Msa1445010:CDS |
| AACAACAAATCGATTATCGC+TGG | 0.564578 | tig0030876:-36509 | None:intergenic |
| CAGGTCGATAATGGTGGCGG+AGG | 0.567323 | tig0030876:+36602 | Msa1445010:CDS |
| CTATTGCACAACTTACAAAA+GGG | 0.580815 | tig0030876:+39534 | Msa1445010:CDS |
| AGCAGCCAAAGCGTTGGAGA+AGG | 0.584396 | tig0030876:+39598 | Msa1445010:CDS |
| TCTGATAAAGTCCTCAAGCA+TGG | 0.590101 | tig0030876:+36671 | Msa1445010:CDS |
| TACAGATCATCCATAAAAGG+AGG | 0.591043 | tig0030876:+38631 | Msa1445010:intron |
| TATTGAAGAGAAAATAAATG+AGG | 0.594099 | tig0030876:-39788 | None:intergenic |
| AAGGAGGGTGGCTATGGCAA+AGG | 0.598462 | tig0030876:+38647 | Msa1445010:CDS |
| CATCGGCGCCGAGTTTGGAT+CGG | 0.608680 | tig0030876:-36721 | None:intergenic |
| ATTCAGGTCGATAATGGTGG+CGG | 0.610159 | tig0030876:+36599 | Msa1445010:CDS |
| GTGGCTATGGCAAAGGCACA+AGG | 0.630715 | tig0030876:+38654 | Msa1445010:CDS |
| AGATGGACAATCCATGCTTG+AGG | 0.636709 | tig0030876:-36682 | None:intergenic |
| TTCCCGGAGAGCAAAAGAGT+TGG | 0.639248 | tig0030876:+37489 | Msa1445010:CDS |
| TCCACTATTGACTTAACTGG+AGG | 0.645324 | tig0030876:+39316 | Msa1445010:CDS |
| AAGTGATAAAGTGGTACAGT+TGG | 0.646636 | tig0030876:-39046 | None:intergenic |
| GAAATTCAGGTCGATAATGG+TGG | 0.656182 | tig0030876:+36596 | Msa1445010:CDS |
| ACAGATCATCCATAAAAGGA+GGG | 0.667416 | tig0030876:+38632 | Msa1445010:intron |
| ACTTACAAAAGGGAAGAACA+AGG | 0.669740 | tig0030876:+39544 | Msa1445010:CDS |
| GATCATCCATAAAAGGAGGG+TGG | 0.671561 | tig0030876:+38635 | Msa1445010:intron |
| TGAGGACTTTATCAGAACGA+CGG | 0.672947 | tig0030876:-36664 | None:intergenic |
| AATTATTACAGGAAGGCTGG+AGG | 0.673966 | tig0030876:+38106 | Msa1445010:intron |
| GGCACAAGGCAATATTTCTG+GGG | 0.681635 | tig0030876:+38668 | Msa1445010:CDS |
| AAAGATGGTAACGAAAACAG+AGG | 0.716729 | tig0030876:+36553 | Msa1445010:exon |
| GGAGTGAGTGATAGTGTGTG+CGG | 0.740781 | tig0030876:+36422 | Msa1445010:five_prime_UTR |
| AAATCGATCTAAAACCCGTG+CGG | 0.777382 | tig0030876:+36486 | Msa1445010:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTACTTTTTTATC+AGG | + | tig0030876:37440-37459 | Msa1445010:intron | 10.0% |
| !! | AAAAAAATTAAAATTACAAG+CGG | + | tig0030876:37634-37653 | Msa1445010:intron | 10.0% |
| !! | AAAAAAAGTTCATATATATT+TGG | - | tig0030876:38803-38822 | None:intergenic | 10.0% |
| !!! | AAACATTATTTTAACTTAAA+TGG | + | tig0030876:39227-39246 | Msa1445010:intron | 10.0% |
| !! | ATATGTAAAACAAACTTATT+TGG | - | tig0030876:38024-38043 | None:intergenic | 15.0% |
| !! | ATCAATTAAAGATACTTATT+TGG | - | tig0030876:38075-38094 | None:intergenic | 15.0% |
| !!! | AAGTATCTTTAATTGATTTT+TGG | + | tig0030876:38078-38097 | Msa1445010:intron | 15.0% |
| !!! | TTATAACAATGACTAATTTT+TGG | + | tig0030876:38303-38322 | Msa1445010:intron | 15.0% |
| !!! | AATAACCAAATTTTCTTTTT+TGG | + | tig0030876:38597-38616 | Msa1445010:intron | 15.0% |
| !! | CAAATAAAAAAAAAACACAA+AGG | - | tig0030876:38968-38987 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAACAAACTTTT+TGG | + | tig0030876:39716-39735 | Msa1445010:three_prime_UTR | 15.0% |
| !!! | GATTTGTTGTTATTGTTAAT+TGG | - | tig0030876:36471-36490 | None:intergenic | 20.0% |
| !! | TTCACAATTAAACGAAATTT+AGG | - | tig0030876:36760-36779 | None:intergenic | 20.0% |
| !!! | TTGTAATTCTATGCTATTTA+GGG | + | tig0030876:37020-37039 | Msa1445010:intron | 20.0% |
| !!! | GTTTTTCTATTCATTAACTT+AGG | + | tig0030876:37066-37085 | Msa1445010:intron | 20.0% |
| !!! | AGTTTCTTTTAGCAAATTTT+TGG | + | tig0030876:37911-37930 | Msa1445010:intron | 20.0% |
| !!! | TTATTTGGAAATTTTCTAGT+GGG | - | tig0030876:38060-38079 | None:intergenic | 20.0% |
| !!! | TTTTGGTAACTAATTATTAC+AGG | + | tig0030876:38095-38114 | Msa1445010:intron | 20.0% |
| !! | TACCATATTAAATATGCAAT+CGG | - | tig0030876:38469-38488 | None:intergenic | 20.0% |
| !!! | AAGCAATATTTTCCTTTAAA+CGG | - | tig0030876:38765-38784 | None:intergenic | 20.0% |
| !! | ATAAAAATCATACATTTGCA+GGG | - | tig0030876:38892-38911 | None:intergenic | 20.0% |
| !! | AATAAAAATCATACATTTGC+AGG | - | tig0030876:38893-38912 | None:intergenic | 20.0% |
| !! | TATATGTGAACAATATATGA+AGG | - | tig0030876:39471-39490 | None:intergenic | 20.0% |
| !! | TATTGAAGAGAAAATAAATG+AGG | - | tig0030876:39791-39810 | None:intergenic | 20.0% |
| !!! | ATAATCGATTTGTTGTTGTT+TGG | + | tig0030876:36515-36534 | Msa1445010:five_prime_UTR | 25.0% |
| ! | ATTGAAGAATCTAGAAATTC+AGG | + | tig0030876:36583-36602 | Msa1445010:CDS | 25.0% |
| ! | TAGGTTTAAATTGATACCAT+CGG | - | tig0030876:36741-36760 | None:intergenic | 25.0% |
| ! | GAAAAACATTAAACCACAAT+TGG | - | tig0030876:36807-36826 | None:intergenic | 25.0% |
| !!! | GTTTTTTTGTTGATTCAGAA+TGG | + | tig0030876:36845-36864 | Msa1445010:intron | 25.0% |
| !! | TCATTTGTAACTCAATTTTG+TGG | + | tig0030876:36970-36989 | Msa1445010:intron | 25.0% |
| ! | AGAATTACAAGTGAATTTCA+CGG | - | tig0030876:37010-37029 | None:intergenic | 25.0% |
| !! | CTTGTAATTCTATGCTATTT+AGG | + | tig0030876:37019-37038 | Msa1445010:intron | 25.0% |
| ! | CATAAGACTTATCATATAAG+TGG | + | tig0030876:37118-37137 | Msa1445010:intron | 25.0% |
| ! | TAATTTCTGAATTTGGATAG+TGG | + | tig0030876:37276-37295 | Msa1445010:intron | 25.0% |
| ! | TAAACCTTTATACCTTTATG+TGG | + | tig0030876:37314-37333 | Msa1445010:intron | 25.0% |
| !! | AAAACTAGAGACTTTTAATC+AGG | - | tig0030876:37398-37417 | None:intergenic | 25.0% |
| !!! | GTCTCTAGTTTTAGAATTTA+TGG | + | tig0030876:37406-37425 | Msa1445010:intron | 25.0% |
| ! | TTGAGTCAATATAAGCTTAA+CGG | + | tig0030876:37608-37627 | Msa1445010:intron | 25.0% |
| ! | AAATTGCAATGATTAACCTT+TGG | + | tig0030876:37743-37762 | Msa1445010:intron | 25.0% |
| !! | TGTAGAAGTTTGAAATGTAA+AGG | - | tig0030876:37791-37810 | None:intergenic | 25.0% |
| !!! | CTTTTAGCAAATTTTTGGAT+TGG | + | tig0030876:37916-37935 | Msa1445010:intron | 25.0% |
| !! | CTTATTTGGAAATTTTCTAG+TGG | - | tig0030876:38061-38080 | None:intergenic | 25.0% |
| ! | TTGAGTAATGAAACCAAAAA+GGG | + | tig0030876:38392-38411 | Msa1445010:intron | 25.0% |
| !! | TACCGATTGCATATTTAATA+TGG | + | tig0030876:38464-38483 | Msa1445010:intron | 25.0% |
| ! | CAAAGCCAAAAAAGAAAATT+TGG | - | tig0030876:38605-38624 | None:intergenic | 25.0% |
| !!! | TTTTTATTTGTCTTCCTGTT+AGG | + | tig0030876:38978-38997 | Msa1445010:intron | 25.0% |
| !! | AATGTTTTATAACTCTTGCT+AGG | - | tig0030876:39214-39233 | None:intergenic | 25.0% |
| !! | GTTCTGTATTTTATTACCTT+CGG | + | tig0030876:39831-39850 | Msa1445010:three_prime_UTR | 25.0% |
| ! | AGACAAATATTTATTACCGA+AGG | - | tig0030876:39850-39869 | None:intergenic | 25.0% |
| ATATACTAGTAGTAGCGTAT+AGG | + | tig0030876:36401-36420 | Msa1445010:five_prime_UTR | 30.0% | |
| ! | CACTTGACTCTTTTATGATA+TGG | + | tig0030876:37190-37209 | Msa1445010:intron | 30.0% |
| GCTCTTGTAATTTCTGAATT+TGG | + | tig0030876:37269-37288 | Msa1445010:intron | 30.0% | |
| AGGCAACATAAAAAACATGA+TGG | - | tig0030876:37341-37360 | None:intergenic | 30.0% | |
| ! | TTTTTATGTTGCCTGAATTG+AGG | + | tig0030876:37347-37366 | Msa1445010:intron | 30.0% |
| ! | AGCAAATGTAACTGTTGTTT+AGG | + | tig0030876:37706-37725 | Msa1445010:intron | 30.0% |
| CATTACACTTTGAGTATACT+TGG | - | tig0030876:37830-37849 | None:intergenic | 30.0% | |
| GAACTGGACATAAATAATCA+GGG | - | tig0030876:37890-37909 | None:intergenic | 30.0% | |
| AGAACTGGACATAAATAATC+AGG | - | tig0030876:37891-37910 | None:intergenic | 30.0% | |
| TTGCTAAAAGAAACTAGAAC+TGG | - | tig0030876:37906-37925 | None:intergenic | 30.0% | |
| !! | TTAGCAAATTTTTGGATTGG+TGG | + | tig0030876:37919-37938 | Msa1445010:intron | 30.0% |
| !!! | TAGCAAATTTTTGGATTGGT+GGG | + | tig0030876:37920-37939 | Msa1445010:intron | 30.0% |
| ATGATTTCCATTCTTTCAAG+AGG | + | tig0030876:37955-37974 | Msa1445010:intron | 30.0% | |
| TGATTTCCATTCTTTCAAGA+GGG | + | tig0030876:37956-37975 | Msa1445010:intron | 30.0% | |
| GGTAACTAATTATTACAGGA+AGG | + | tig0030876:38099-38118 | Msa1445010:intron | 30.0% | |
| AACTCACTTAACCTTACTAT+CGG | + | tig0030876:38215-38234 | Msa1445010:intron | 30.0% | |
| GTTGAGTAATGAAACCAAAA+AGG | + | tig0030876:38391-38410 | Msa1445010:intron | 30.0% | |
| !! | TCTTACTTTGCATTTTCAAG+AGG | + | tig0030876:38490-38509 | Msa1445010:intron | 30.0% |
| TTGTACAGATCATCCATAAA+AGG | + | tig0030876:38628-38647 | Msa1445010:intron | 30.0% | |
| TGAAATTGAAGACCGTTTAA+AGG | + | tig0030876:38750-38769 | Msa1445010:intron | 30.0% | |
| GCAACAGAAATAAATCACTA+CGG | - | tig0030876:38931-38950 | None:intergenic | 30.0% | |
| AAGTATCTACTCTATGAGTT+AGG | + | tig0030876:39084-39103 | Msa1445010:intron | 30.0% | |
| ATTTGAATATAGTCCTGCTT+TGG | + | tig0030876:39426-39445 | Msa1445010:intron | 30.0% | |
| CTATTGCACAACTTACAAAA+GGG | + | tig0030876:39534-39553 | Msa1445010:CDS | 30.0% | |
| AAGAACAAGGAAGATAAAGA+AGG | + | tig0030876:39557-39576 | Msa1445010:CDS | 30.0% | |
| AACAACAAATCGATTATCGC+TGG | - | tig0030876:36512-36531 | None:intergenic | 35.0% | |
| ATCTGTGAATTCAGCAAAGA+TGG | + | tig0030876:36538-36557 | Msa1445010:exon | 35.0% | |
| ! | AAAGATGGTAACGAAAACAG+AGG | + | tig0030876:36553-36572 | Msa1445010:exon | 35.0% |
| CTAGAAATTCAGGTCGATAA+TGG | + | tig0030876:36593-36612 | Msa1445010:CDS | 35.0% | |
| ! | GAGTTTGGAATCATTCAAGA+TGG | - | tig0030876:36702-36721 | None:intergenic | 35.0% |
| AAGTCAACTACTTCCAATTG+TGG | + | tig0030876:36791-36810 | Msa1445010:intron | 35.0% | |
| TCATTAACTTAGGCTCTGTT+TGG | + | tig0030876:37076-37095 | Msa1445010:intron | 35.0% | |
| ! | TGGACCACATAAAGGTATAA+AGG | - | tig0030876:37321-37340 | None:intergenic | 35.0% |
| !! | AAACATGATGGACCACATAA+AGG | - | tig0030876:37329-37348 | None:intergenic | 35.0% |
| ATGTAGCAAATCCTCAATTC+AGG | - | tig0030876:37361-37380 | None:intergenic | 35.0% | |
| ! | AGACTTTTAATCAGGCATGA+AGG | - | tig0030876:37390-37409 | None:intergenic | 35.0% |
| ! | TTTTTATCAGGACTGCACAA+AGG | + | tig0030876:37452-37471 | Msa1445010:intron | 35.0% |
| !! | AACCTTTGGCATCTTTGTTT+TGG | + | tig0030876:37757-37776 | Msa1445010:intron | 35.0% |
| !!! | ACCTTTGGCATCTTTGTTTT+GGG | + | tig0030876:37758-37777 | Msa1445010:intron | 35.0% |
| GGACATAAATAATCAGGGAA+CGG | - | tig0030876:37885-37904 | None:intergenic | 35.0% | |
| ACTAATTATTACAGGAAGGC+TGG | + | tig0030876:38103-38122 | Msa1445010:intron | 35.0% | |
| AGTGAGTTTACTTGATCAAG+AGG | - | tig0030876:38203-38222 | None:intergenic | 35.0% | |
| ACTCACTTAACCTTACTATC+GGG | + | tig0030876:38216-38235 | Msa1445010:intron | 35.0% | |
| AAGATTTACGCTTCATCACA+GGG | - | tig0030876:38285-38304 | None:intergenic | 35.0% | |
| TAAGATTTACGCTTCATCAC+AGG | - | tig0030876:38286-38305 | None:intergenic | 35.0% | |
| CTTTAACCTTCTAATAGTCC+AGG | + | tig0030876:38365-38384 | Msa1445010:intron | 35.0% | |
| !! | TAGTATTAGGTTGCCCTTTT+TGG | - | tig0030876:38408-38427 | None:intergenic | 35.0% |
| TAGTGAGGCTCTATAGTATT+AGG | - | tig0030876:38421-38440 | None:intergenic | 35.0% | |
| !! | TACTTTGCATTTTCAAGAGG+CGG | + | tig0030876:38493-38512 | Msa1445010:intron | 35.0% |
| ATTGTTACTCAAGAAAGCCT+AGG | - | tig0030876:38580-38599 | None:intergenic | 35.0% | |
| TACAGATCATCCATAAAAGG+AGG | + | tig0030876:38631-38650 | Msa1445010:intron | 35.0% | |
| ACAGATCATCCATAAAAGGA+GGG | + | tig0030876:38632-38651 | Msa1445010:intron | 35.0% | |
| !! | ATATTTCTGGGGCTATTGAA+TGG | + | tig0030876:38679-38698 | Msa1445010:CDS | 35.0% |
| AACGGTCTTCAATTTCAGAT+GGG | - | tig0030876:38747-38766 | None:intergenic | 35.0% | |
| AAACGGTCTTCAATTTCAGA+TGG | - | tig0030876:38748-38767 | None:intergenic | 35.0% | |
| ! | TCCTCATTTTCACAGATTCA+TGG | + | tig0030876:38824-38843 | Msa1445010:intron | 35.0% |
| AATCACTACGGAAAGAGAAA+CGG | - | tig0030876:38919-38938 | None:intergenic | 35.0% | |
| AAGTGATAAAGTGGTACAGT+TGG | - | tig0030876:39049-39068 | None:intergenic | 35.0% | |
| GCATATGCTAAGTGATAAAG+TGG | - | tig0030876:39058-39077 | None:intergenic | 35.0% | |
| TTATTAGAGTGAAGAAACCC+GGG | - | tig0030876:39148-39167 | None:intergenic | 35.0% | |
| GTTATTAGAGTGAAGAAACC+CGG | - | tig0030876:39149-39168 | None:intergenic | 35.0% | |
| !! | TTAACTTAAATGGTGTTGCC+AGG | + | tig0030876:39237-39256 | Msa1445010:intron | 35.0% |
| CATAGTATTTCTTGGCAGTT+TGG | - | tig0030876:39294-39313 | None:intergenic | 35.0% | |
| AGTGGATGCATAGTATTTCT+TGG | - | tig0030876:39302-39321 | None:intergenic | 35.0% | |
| !! | TGGTGAGTGTTTATTTTCTG+TGG | + | tig0030876:39371-39390 | Msa1445010:intron | 35.0% |
| CAGAATCGTGAACTTGTAAA+TGG | - | tig0030876:39404-39423 | None:intergenic | 35.0% | |
| TGATATCTACTAACCAAAGC+AGG | - | tig0030876:39442-39461 | None:intergenic | 35.0% | |
| GCTATTGCACAACTTACAAA+AGG | + | tig0030876:39533-39552 | Msa1445010:CDS | 35.0% | |
| ACTTACAAAAGGGAAGAACA+AGG | + | tig0030876:39544-39563 | Msa1445010:CDS | 35.0% | |
| CGACAATGTTAAACTCTTCA+AGG | - | tig0030876:39669-39688 | None:intergenic | 35.0% | |
| ! | AAGACATGTGAAGCTTTTGT+TGG | + | tig0030876:39871-39890 | Msa1445010:three_prime_UTR | 35.0% |
| ATACACTGACAACATGCATT+AGG | - | tig0030876:39928-39947 | None:intergenic | 35.0% | |
| ! | AAATCGATCTAAAACCCGTG+CGG | + | tig0030876:36486-36505 | Msa1445010:five_prime_UTR | 40.0% |
| ! | GAAATTCAGGTCGATAATGG+TGG | + | tig0030876:36596-36615 | Msa1445010:CDS | 40.0% |
| TGAGGACTTTATCAGAACGA+CGG | - | tig0030876:36667-36686 | None:intergenic | 40.0% | |
| TCTGATAAAGTCCTCAAGCA+TGG | + | tig0030876:36671-36690 | Msa1445010:CDS | 40.0% | |
| ! | AGAATGGACTTTGTATGAGC+AGG | + | tig0030876:36861-36880 | Msa1445010:intron | 40.0% |
| TCAATGTCTTGATGTTGCTC+AGG | + | tig0030876:36906-36925 | Msa1445010:CDS | 40.0% | |
| TAGGGAATCTTATGCATAGC+TGG | + | tig0030876:37038-37057 | Msa1445010:intron | 40.0% | |
| TGAGAGATCCATGTGTTAGA+TGG | + | tig0030876:37219-37238 | Msa1445010:intron | 40.0% | |
| ATCCATGTGTTAGATGGTAC+TGG | + | tig0030876:37225-37244 | Msa1445010:intron | 40.0% | |
| AACCAGTACCATCTAACACA+TGG | - | tig0030876:37230-37249 | None:intergenic | 40.0% | |
| ! | TTACCAACTCTTTTGCTCTC+CGG | - | tig0030876:37495-37514 | None:intergenic | 40.0% |
| AGCAACTTAAATCCACAGCA+CGG | - | tig0030876:37546-37565 | None:intergenic | 40.0% | |
| !! | AGTAGCAACTGTTAGGTTGA+TGG | - | tig0030876:37582-37601 | None:intergenic | 40.0% |
| AGACAGCTGTTACATTTGCA+GGG | - | tig0030876:37682-37701 | None:intergenic | 40.0% | |
| TAGACAGCTGTTACATTTGC+AGG | - | tig0030876:37683-37702 | None:intergenic | 40.0% | |
| TGCAAATGTAACAGCTGTCT+AGG | + | tig0030876:37682-37701 | Msa1445010:intron | 40.0% | |
| ACCCAAAACAAAGATGCCAA+AGG | - | tig0030876:37762-37781 | None:intergenic | 40.0% | |
| AAGCATCCCTCTTGAAAGAA+TGG | - | tig0030876:37965-37984 | None:intergenic | 40.0% | |
| AATTATTACAGGAAGGCTGG+AGG | + | tig0030876:38106-38125 | Msa1445010:intron | 40.0% | |
| ! | GCAATGTTGCTTGAAGCAAA+AGG | + | tig0030876:38128-38147 | Msa1445010:CDS | 40.0% |
| !! | AAAAGCGTACTCAAGCCTTT+TGG | + | tig0030876:38169-38188 | Msa1445010:CDS | 40.0% |
| CTCACTTAACCTTACTATCG+GGG | + | tig0030876:38217-38236 | Msa1445010:intron | 40.0% | |
| ACTATAGAGCCTCACTATAG+TGG | + | tig0030876:38424-38443 | Msa1445010:intron | 40.0% | |
| CTATAGAGCCTCACTATAGT+GGG | + | tig0030876:38425-38444 | Msa1445010:intron | 40.0% | |
| ! | CCTCACTATAGTGGGATTTA+GGG | + | tig0030876:38433-38452 | Msa1445010:intron | 40.0% |
| ! | CTCACTATAGTGGGATTTAG+GGG | + | tig0030876:38434-38453 | Msa1445010:intron | 40.0% |
| AAGGCACAAGGCAATATTTC+TGG | + | tig0030876:38666-38685 | Msa1445010:CDS | 40.0% | |
| AGGCACAAGGCAATATTTCT+GGG | + | tig0030876:38667-38686 | Msa1445010:CDS | 40.0% | |
| GCCATGAATCTGTGAAAATG+AGG | - | tig0030876:38828-38847 | None:intergenic | 40.0% | |
| GCTGCTTGTTTATACCTAAC+AGG | - | tig0030876:38995-39014 | None:intergenic | 40.0% | |
| !! | CATCTCTAGGACGCAATATT+CGG | - | tig0030876:39181-39200 | None:intergenic | 40.0% |
| TATTGCGTCCTAGAGATGTA+TGG | + | tig0030876:39183-39202 | Msa1445010:intron | 40.0% | |
| ATTGCGTCCTAGAGATGTAT+GGG | + | tig0030876:39184-39203 | Msa1445010:intron | 40.0% | |
| AGGTAAACCCATACATCTCT+AGG | - | tig0030876:39194-39213 | None:intergenic | 40.0% | |
| !! | GCATCCACTATTGACTTAAC+TGG | + | tig0030876:39313-39332 | Msa1445010:CDS | 40.0% |
| !! | TCCACTATTGACTTAACTGG+AGG | + | tig0030876:39316-39335 | Msa1445010:CDS | 40.0% |
| AAGAATACCAGAGCTCTCTT+CGG | + | tig0030876:39340-39359 | Msa1445010:CDS | 40.0% | |
| TTCAAGGCAGTTGTAAGTTG+AGG | - | tig0030876:39653-39672 | None:intergenic | 40.0% | |
| ! | ATTCAGGTCGATAATGGTGG+CGG | + | tig0030876:36599-36618 | Msa1445010:CDS | 45.0% |
| TTCCCTCGTCAGAAAACTCA+AGG | + | tig0030876:36640-36659 | Msa1445010:CDS | 45.0% | |
| ! | GACCTTGAGTTTTCTGACGA+GGG | - | tig0030876:36645-36664 | None:intergenic | 45.0% |
| AGATGGACAATCCATGCTTG+AGG | - | tig0030876:36685-36704 | None:intergenic | 45.0% | |
| TCCAAACTCCGATCCAAACT+CGG | + | tig0030876:36713-36732 | Msa1445010:CDS | 45.0% | |
| GAGTCAAGTGACAAGAGACA+GGG | - | tig0030876:37180-37199 | None:intergenic | 45.0% | |
| AGAGTCAAGTGACAAGAGAC+AGG | - | tig0030876:37181-37200 | None:intergenic | 45.0% | |
| ! | TACCAACTCTTTTGCTCTCC+GGG | - | tig0030876:37494-37513 | None:intergenic | 45.0% |
| AGCAGACAGTAGCAACTGTT+AGG | - | tig0030876:37589-37608 | None:intergenic | 45.0% | |
| ! | GTGTGCAGTTGCTTGTGTTT+TGG | - | tig0030876:37863-37882 | None:intergenic | 45.0% |
| TGCTTGAAGCAAAAGGTTCC+TGG | + | tig0030876:38135-38154 | Msa1445010:CDS | 45.0% | |
| GCTTGAAGCAAAAGGTTCCT+GGG | + | tig0030876:38136-38155 | Msa1445010:CDS | 45.0% | |
| AGCAAAAGGTTCCTGGGAAA+AGG | + | tig0030876:38142-38161 | Msa1445010:CDS | 45.0% | |
| CAAGAGGATTGTCCTCCAAA+AGG | - | tig0030876:38187-38206 | None:intergenic | 45.0% | |
| ACCTTACTATCGGGGAACAA+AGG | + | tig0030876:38225-38244 | Msa1445010:intron | 45.0% | |
| CCTTACTATCGGGGAACAAA+GGG | + | tig0030876:38226-38245 | Msa1445010:intron | 45.0% | |
| CTTACTATCGGGGAACAAAG+GGG | + | tig0030876:38227-38246 | Msa1445010:intron | 45.0% | |
| TTACTATCGGGGAACAAAGG+GGG | + | tig0030876:38228-38247 | Msa1445010:intron | 45.0% | |
| AACCTTCTAATAGTCCAGGC+TGG | + | tig0030876:38369-38388 | Msa1445010:intron | 45.0% | |
| AACCAGCCTGGACTATTAGA+AGG | - | tig0030876:38374-38393 | None:intergenic | 45.0% | |
| GTTTCATTACTCAACCAGCC+TGG | - | tig0030876:38386-38405 | None:intergenic | 45.0% | |
| ! | GCCTCACTATAGTGGGATTT+AGG | + | tig0030876:38432-38451 | Msa1445010:intron | 45.0% |
| CCCTAAATCCCACTATAGTG+AGG | - | tig0030876:38436-38455 | None:intergenic | 45.0% | |
| ! | ACTATAGTGGGATTTAGGGG+AGG | + | tig0030876:38437-38456 | Msa1445010:intron | 45.0% |
| ! | CTATAGTGGGATTTAGGGGA+GGG | + | tig0030876:38438-38457 | Msa1445010:intron | 45.0% |
| GATCATCCATAAAAGGAGGG+TGG | + | tig0030876:38635-38654 | Msa1445010:intron | 45.0% | |
| ! | GGCACAAGGCAATATTTCTG+GGG | + | tig0030876:38668-38687 | Msa1445010:CDS | 45.0% |
| ! | ACAAGCAGCATTTTGCTACG+AGG | + | tig0030876:39006-39025 | Msa1445010:CDS | 45.0% |
| TGCCAGGTACTTTATACGCT+TGG | + | tig0030876:39253-39272 | Msa1445010:intron | 45.0% | |
| ! | CACCAAGCGTATAAAGTACC+TGG | - | tig0030876:39258-39277 | None:intergenic | 45.0% |
| CAGGTACTTTATACGCTTGG+TGG | + | tig0030876:39256-39275 | Msa1445010:intron | 45.0% | |
| GCCTCCAGTTAAGTCAATAG+TGG | - | tig0030876:39320-39339 | None:intergenic | 45.0% | |
| AGCTCTCTTCGGTATATGCT+TGG | + | tig0030876:39351-39370 | Msa1445010:CDS | 45.0% | |
| GTAATCCTTCTCCAACGCTT+TGG | - | tig0030876:39606-39625 | None:intergenic | 45.0% | |
| ! | GTAAGTTGAGGAAGCTTGTC+AGG | - | tig0030876:39641-39660 | None:intergenic | 45.0% |
| ! | GGAGTGAGTGATAGTGTGTG+CGG | + | tig0030876:36422-36441 | Msa1445010:five_prime_UTR | 50.0% |
| ! | GGACCTTGAGTTTTCTGACG+AGG | - | tig0030876:36646-36665 | None:intergenic | 50.0% |
| GAGACAGGGAAGAGTCTGTT+TGG | - | tig0030876:37166-37185 | None:intergenic | 50.0% | |
| AGGACTGCACAAAGGCTCTT+CGG | + | tig0030876:37460-37479 | Msa1445010:intron | 50.0% | |
| TTCCCGGAGAGCAAAAGAGT+TGG | + | tig0030876:37489-37508 | Msa1445010:CDS | 50.0% | |
| TCTACGTCTTTACCGTGCTG+TGG | + | tig0030876:37531-37550 | Msa1445010:intron | 50.0% | |
| ! | GCAGGGCTCTATCTAAGATC+AGG | - | tig0030876:37665-37684 | None:intergenic | 50.0% |
| !!! | CGCTTTTTCTGCCTTTTCCC+AGG | - | tig0030876:38156-38175 | None:intergenic | 50.0% |
| ! | AGCGTACTCAAGCCTTTTGG+AGG | + | tig0030876:38172-38191 | Msa1445010:CDS | 50.0% |
| CCCTTTGTTCCCCGATAGTA+AGG | - | tig0030876:38229-38248 | None:intergenic | 50.0% | |
| TACTATCGGGGAACAAAGGG+GGG | + | tig0030876:38229-38248 | Msa1445010:intron | 50.0% | |
| ACCTGTTATCTCCCGTCACA+CGG | + | tig0030876:38534-38553 | Msa1445010:intron | 50.0% | |
| TTGGAGTTGCTTCCGTGTGA+CGG | - | tig0030876:38549-38568 | None:intergenic | 50.0% | |
| ! | CCATAGCCACCCTCCTTTTA+TGG | - | tig0030876:38644-38663 | None:intergenic | 50.0% |
| CCATAAAAGGAGGGTGGCTA+TGG | + | tig0030876:38641-38660 | Msa1445010:CDS | 50.0% | |
| TCATGGCAGATCACGATGCA+TGG | + | tig0030876:38841-38860 | Msa1445010:CDS | 50.0% | |
| TCAAATTCTTCCCCGTCTCC+CGG | + | tig0030876:39127-39146 | Msa1445010:intron | 50.0% | |
| GCATATACCGAAGAGAGCTC+TGG | - | tig0030876:39350-39369 | None:intergenic | 50.0% | |
| ! | GTGCAATAGCAGAAGTGCAC+TGG | - | tig0030876:39523-39542 | None:intergenic | 50.0% |
| ATCTCTAGCAGCCAAAGCGT+TGG | + | tig0030876:39592-39611 | Msa1445010:CDS | 50.0% | |
| ! | AGTGATAGTGTGTGCGGTGC+TGG | + | tig0030876:36428-36447 | Msa1445010:five_prime_UTR | 55.0% |
| ATCGATTATCGCTGGCCGCA+CGG | - | tig0030876:36504-36523 | None:intergenic | 55.0% | |
| !! | ATAATGGTGGCGGAGGAGCT+TGG | + | tig0030876:36609-36628 | Msa1445010:CDS | 55.0% |
| !! | TAATGGTGGCGGAGGAGCTT+GGG | + | tig0030876:36610-36629 | Msa1445010:CDS | 55.0% |
| GCCGAGTTTGGATCGGAGTT+TGG | - | tig0030876:36717-36736 | None:intergenic | 55.0% | |
| GCAGGTTGCAGTTGCTGCTA+TGG | + | tig0030876:36879-36898 | Msa1445010:CDS | 55.0% | |
| GCACAAAGGCTCTTCGGAAG+AGG | + | tig0030876:37466-37485 | Msa1445010:CDS | 55.0% | |
| ACTATCGGGGAACAAAGGGG+GGG | + | tig0030876:38230-38249 | Msa1445010:intron | 55.0% | |
| ! | TCCGTGTGACGGGAGATAAC+AGG | - | tig0030876:38538-38557 | None:intergenic | 55.0% |
| TGGAGTTGCTTCCGTGTGAC+GGG | - | tig0030876:38548-38567 | None:intergenic | 55.0% | |
| CAACTCCAACTGTTGCGCCT+AGG | + | tig0030876:38560-38579 | Msa1445010:intron | 55.0% | |
| GAAAGCCTAGGCGCAACAGT+TGG | - | tig0030876:38568-38587 | None:intergenic | 55.0% | |
| AAGGAGGGTGGCTATGGCAA+AGG | + | tig0030876:38647-38666 | Msa1445010:CDS | 55.0% | |
| ! | GTGGCTATGGCAAAGGCACA+AGG | + | tig0030876:38654-38673 | Msa1445010:CDS | 55.0% |
| CAAATTCTTCCCCGTCTCCC+GGG | + | tig0030876:39128-39147 | Msa1445010:intron | 55.0% | |
| AGTGAAGAAACCCGGGAGAC+GGG | - | tig0030876:39141-39160 | None:intergenic | 55.0% | |
| GAGTGAAGAAACCCGGGAGA+CGG | - | tig0030876:39142-39161 | None:intergenic | 55.0% | |
| !! | AGCAGCCAAAGCGTTGGAGA+AGG | + | tig0030876:39598-39617 | Msa1445010:CDS | 55.0% |
| TCGATTATCGCTGGCCGCAC+GGG | - | tig0030876:36503-36522 | None:intergenic | 60.0% | |
| !! | CAGGTCGATAATGGTGGCGG+AGG | + | tig0030876:36602-36621 | Msa1445010:CDS | 60.0% |
| ! | CATCGGCGCCGAGTTTGGAT+CGG | - | tig0030876:36724-36743 | None:intergenic | 60.0% |
| ! | GATACCATCGGCGCCGAGTT+TGG | - | tig0030876:36729-36748 | None:intergenic | 60.0% |
| GGCTCTTCGGAAGAGGTTCC+CGG | + | tig0030876:37473-37492 | Msa1445010:CDS | 60.0% | |
| CTATCGGGGAACAAAGGGGG+GGG | + | tig0030876:38231-38250 | Msa1445010:intron | 60.0% | |
| TATCGGGGAACAAAGGGGGG+GGG | + | tig0030876:38232-38251 | Msa1445010:intron | 60.0% | |
| GTGAAGAAACCCGGGAGACG+GGG | - | tig0030876:39140-39159 | None:intergenic | 60.0% | |
| ! | CGATCCAAACTCGGCGCCGA+TGG | + | tig0030876:36722-36741 | Msa1445010:CDS | 65.0% |
| ATCGGGGAACAAAGGGGGGG+GGG | + | tig0030876:38233-38252 | Msa1445010:intron | 65.0% | |
| TCGGGGAACAAAGGGGGGGG+GGG | + | tig0030876:38234-38253 | Msa1445010:intron | 70.0% | |
| CGGGGAACAAAGGGGGGGGG+GGG | + | tig0030876:38235-38254 | Msa1445010:intron | 75.0% | |
| GGGGAACAAAGGGGGGGGGG+GGG | + | tig0030876:38236-38255 | Msa1445010:intron | 75.0% | |
| GGGAACAAAGGGGGGGGGGG+GGG | + | tig0030876:38237-38256 | Msa1445010:intron | 75.0% | |
| GGAACAAAGGGGGGGGGGGG+GGG | + | tig0030876:38238-38257 | Msa1445010:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030876 | gene | 36393 | 39973 | 36393 | ID=Msa1445010;Name=Msa1445010 |
| tig0030876 | mRNA | 36393 | 39973 | 36393 | ID=Msa1445010-mRNA-1;Parent=Msa1445010;Name=Msa1445010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=164|1|1|1|1|1|9|279|302 |
| tig0030876 | exon | 36393 | 36743 | 36393 | ID=Msa1445010-mRNA-1:exon:14734;Parent=Msa1445010-mRNA-1 |
| tig0030876 | exon | 36863 | 36927 | 36863 | ID=Msa1445010-mRNA-1:exon:14735;Parent=Msa1445010-mRNA-1 |
| tig0030876 | exon | 37462 | 37510 | 37462 | ID=Msa1445010-mRNA-1:exon:14736;Parent=Msa1445010-mRNA-1 |
| tig0030876 | exon | 38117 | 38211 | 38117 | ID=Msa1445010-mRNA-1:exon:14737;Parent=Msa1445010-mRNA-1 |
| tig0030876 | exon | 38636 | 38721 | 38636 | ID=Msa1445010-mRNA-1:exon:14738;Parent=Msa1445010-mRNA-1 |
| tig0030876 | exon | 38839 | 38898 | 38839 | ID=Msa1445010-mRNA-1:exon:14739;Parent=Msa1445010-mRNA-1 |
| tig0030876 | exon | 39000 | 39081 | 39000 | ID=Msa1445010-mRNA-1:exon:14740;Parent=Msa1445010-mRNA-1 |
| tig0030876 | exon | 39259 | 39372 | 39259 | ID=Msa1445010-mRNA-1:exon:14741;Parent=Msa1445010-mRNA-1 |
| tig0030876 | exon | 39524 | 39973 | 39524 | ID=Msa1445010-mRNA-1:exon:14742;Parent=Msa1445010-mRNA-1 |
| tig0030876 | five_prime_UTR | 36393 | 36556 | 36393 | ID=Msa1445010-mRNA-1:five_prime_utr;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 36557 | 36743 | 36557 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 36863 | 36927 | 36863 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 37462 | 37510 | 37462 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 38117 | 38211 | 38117 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 38636 | 38721 | 38636 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 38839 | 38898 | 38839 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 39000 | 39081 | 39000 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 39259 | 39372 | 39259 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | CDS | 39524 | 39694 | 39524 | ID=Msa1445010-mRNA-1:cds;Parent=Msa1445010-mRNA-1 |
| tig0030876 | three_prime_UTR | 39695 | 39973 | 39695 | ID=Msa1445010-mRNA-1:three_prime_utr;Parent=Msa1445010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
