Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172870 | XP_003626415.1 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172870 | sp|Q6INS3|EMC2A_XENLA | 39.700 | 267 | 157 | 3 | 32 | 298 | 23 | 285 | 2.61e-58 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa1172870 | -0.817958 | 2.516955e-52 | -8.615850e-47 |
| Msa0011060 | Msa1172870 | -0.821629 | 3.647145e-53 | -8.615850e-47 |
| Msa0011100 | Msa1172870 | -0.808489 | 3.020246e-50 | -8.615850e-47 |
| Msa0011410 | Msa1172870 | -0.822705 | 2.053296e-53 | -8.615850e-47 |
| Msa0011440 | Msa1172870 | -0.809133 | 2.199601e-50 | -8.615850e-47 |
| Msa0017710 | Msa1172870 | 0.800504 | 1.397064e-48 | -8.615850e-47 |
| Msa0039750 | Msa1172870 | 0.800110 | 1.680408e-48 | -8.615850e-47 |
| Msa0050320 | Msa1172870 | -0.807374 | 5.214377e-50 | -8.615850e-47 |
| Msa0056230 | Msa1172870 | -0.814388 | 1.580716e-51 | -8.615850e-47 |
| Msa0105140 | Msa1172870 | -0.814694 | 1.352486e-51 | -8.615850e-47 |
| Msa0603310 | Msa1172870 | 0.802490 | 5.472510e-49 | -8.615850e-47 |
| Msa0605150 | Msa1172870 | -0.800301 | 1.537105e-48 | -8.615850e-47 |
| Msa0606600 | Msa1172870 | 0.801922 | 7.164927e-49 | -8.615850e-47 |
| Msa0610240 | Msa1172870 | -0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa0615070 | Msa1172870 | 0.809557 | 1.784100e-50 | -8.615850e-47 |
| Msa0616890 | Msa1172870 | -0.813079 | 3.069041e-51 | -8.615850e-47 |
| Msa0647300 | Msa1172870 | 0.805898 | 1.068653e-49 | -8.615850e-47 |
| Msa0654400 | Msa1172870 | -0.820887 | 5.408224e-53 | -8.615850e-47 |
| Msa0654500 | Msa1172870 | -0.809843 | 1.548259e-50 | -8.615850e-47 |
| Msa0676570 | Msa1172870 | -0.830672 | 2.573479e-55 | -8.615850e-47 |
| Msa0685810 | Msa1172870 | -0.806037 | 9.990242e-50 | -8.615850e-47 |
| Msa0685860 | Msa1172870 | -0.802860 | 4.591620e-49 | -8.615850e-47 |
| Msa0686830 | Msa1172870 | 0.814650 | 1.383132e-51 | -8.615850e-47 |
| Msa0695250 | Msa1172870 | -0.801052 | 1.079807e-48 | -8.615850e-47 |
| Msa0701800 | Msa1172870 | -0.838554 | 2.684171e-57 | -8.615850e-47 |
| Msa0703430 | Msa1172870 | -0.803230 | 3.849500e-49 | -8.615850e-47 |
| Msa0720490 | Msa1172870 | 0.815152 | 1.070274e-51 | -8.615850e-47 |
| Msa0732970 | Msa1172870 | 0.804857 | 1.766030e-49 | -8.615850e-47 |
| Msa0738460 | Msa1172870 | -0.805231 | 1.474734e-49 | -8.615850e-47 |
| Msa0742690 | Msa1172870 | -0.806638 | 7.463804e-50 | -8.615850e-47 |
| Msa0750490 | Msa1172870 | -0.800398 | 1.468420e-48 | -8.615850e-47 |
| Msa0773960 | Msa1172870 | 0.804394 | 2.206533e-49 | -8.615850e-47 |
| Msa0779830 | Msa1172870 | -0.812672 | 3.768076e-51 | -8.615850e-47 |
| Msa0794900 | Msa1172870 | -0.806983 | 6.310016e-50 | -8.615850e-47 |
| Msa0829250 | Msa1172870 | -0.800940 | 1.138291e-48 | -8.615850e-47 |
| Msa0841670 | Msa1172870 | 0.807869 | 4.094419e-50 | -8.615850e-47 |
| Msa0127350 | Msa1172870 | -0.802546 | 5.329482e-49 | -8.615850e-47 |
| Msa0141410 | Msa1172870 | 0.806639 | 7.462087e-50 | -8.615850e-47 |
| Msa0151380 | Msa1172870 | -0.809031 | 2.313093e-50 | -8.615850e-47 |
| Msa0154720 | Msa1172870 | -0.806659 | 7.387866e-50 | -8.615850e-47 |
| Msa0187660 | Msa1172870 | 0.998972 | 3.734073e-284 | -8.615850e-47 |
| Msa0189150 | Msa1172870 | -0.818706 | 1.703956e-52 | -8.615850e-47 |
| Msa0212950 | Msa1172870 | -0.803488 | 3.403468e-49 | -8.615850e-47 |
| Msa0225070 | Msa1172870 | -0.826686 | 2.367229e-54 | -8.615850e-47 |
| Msa0225280 | Msa1172870 | -0.804551 | 2.045921e-49 | -8.615850e-47 |
| Msa0229350 | Msa1172870 | -0.810910 | 9.113072e-51 | -8.615850e-47 |
| Msa0364910 | Msa1172870 | -0.805452 | 1.325846e-49 | -8.615850e-47 |
| Msa0373550 | Msa1172870 | 0.835325 | 1.792289e-56 | -8.615850e-47 |
| Msa0387630 | Msa1172870 | -0.807782 | 4.272820e-50 | -8.615850e-47 |
| Msa0403740 | Msa1172870 | -0.814720 | 1.334172e-51 | -8.615850e-47 |
| Msa0412580 | Msa1172870 | -0.815150 | 1.071125e-51 | -8.615850e-47 |
| Msa0419150 | Msa1172870 | -0.811534 | 6.673983e-51 | -8.615850e-47 |
| Msa0422070 | Msa1172870 | 0.824420 | 8.149007e-54 | -8.615850e-47 |
| Msa0422230 | Msa1172870 | -0.815288 | 9.982358e-52 | -8.615850e-47 |
| Msa0428720 | Msa1172870 | -0.807672 | 4.509325e-50 | -8.615850e-47 |
| Msa0433090 | Msa1172870 | 0.822105 | 2.829753e-53 | -8.615850e-47 |
| Msa0456450 | Msa1172870 | -0.814203 | 1.736531e-51 | -8.615850e-47 |
| Msa0457070 | Msa1172870 | -0.816537 | 5.254284e-52 | -8.615850e-47 |
| Msa0464980 | Msa1172870 | -0.813701 | 2.240184e-51 | -8.615850e-47 |
| Msa0468660 | Msa1172870 | 0.824636 | 7.251149e-54 | -8.615850e-47 |
| Msa0472820 | Msa1172870 | 0.806831 | 6.796022e-50 | -8.615850e-47 |
| Msa0998660 | Msa1172870 | -0.802410 | 5.684849e-49 | -8.615850e-47 |
| Msa1001120 | Msa1172870 | 0.820475 | 6.726691e-53 | -8.615850e-47 |
| Msa1002550 | Msa1172870 | -0.807895 | 4.042173e-50 | -8.615850e-47 |
| Msa1014550 | Msa1172870 | -0.811765 | 5.942677e-51 | -8.615850e-47 |
| Msa1016580 | Msa1172870 | -0.811290 | 7.539553e-51 | -8.615850e-47 |
| Msa1025440 | Msa1172870 | -0.809243 | 2.083433e-50 | -8.615850e-47 |
| Msa1035050 | Msa1172870 | 0.811974 | 5.351567e-51 | -8.615850e-47 |
| Msa1039150 | Msa1172870 | -0.800769 | 1.233755e-48 | -8.615850e-47 |
| Msa1055520 | Msa1172870 | -0.810613 | 1.056793e-50 | -8.615850e-47 |
| Msa1056890 | Msa1172870 | 0.806023 | 1.005861e-49 | -8.615850e-47 |
| Msa1075090 | Msa1172870 | 0.824355 | 8.442890e-54 | -8.615850e-47 |
| Msa1085820 | Msa1172870 | 0.809286 | 2.039210e-50 | -8.615850e-47 |
| Msa1088400 | Msa1172870 | -0.806984 | 6.306146e-50 | -8.615850e-47 |
| Msa1093190 | Msa1172870 | -0.813163 | 2.941314e-51 | -8.615850e-47 |
| Msa0242720 | Msa1172870 | 0.824522 | 7.714205e-54 | -8.615850e-47 |
| Msa0253230 | Msa1172870 | -0.806020 | 1.007584e-49 | -8.615850e-47 |
| Msa0261350 | Msa1172870 | -0.803143 | 4.012250e-49 | -8.615850e-47 |
| Msa0266140 | Msa1172870 | -0.817942 | 2.538485e-52 | -8.615850e-47 |
| Msa0267510 | Msa1172870 | -0.801345 | 9.409448e-49 | -8.615850e-47 |
| Msa0270730 | Msa1172870 | -0.821875 | 3.199563e-53 | -8.615850e-47 |
| Msa0292060 | Msa1172870 | -0.800497 | 1.401874e-48 | -8.615850e-47 |
| Msa0299130 | Msa1172870 | -0.815453 | 9.173624e-52 | -8.615850e-47 |
| Msa0304060 | Msa1172870 | -0.800129 | 1.665610e-48 | -8.615850e-47 |
| Msa0328870 | Msa1172870 | 0.809018 | 2.327499e-50 | -8.615850e-47 |
| Msa0331070 | Msa1172870 | -0.802709 | 4.933684e-49 | -8.615850e-47 |
| Msa0340700 | Msa1172870 | -0.806358 | 8.549519e-50 | -8.615850e-47 |
| Msa0343230 | Msa1172870 | -0.823069 | 1.689092e-53 | -8.615850e-47 |
| Msa0358470 | Msa1172870 | 0.824054 | 9.936215e-54 | -8.615850e-47 |
| Msa0363180 | Msa1172870 | -0.801928 | 7.144298e-49 | -8.615850e-47 |
| Msa0364030 | Msa1172870 | -0.815307 | 9.883719e-52 | -8.615850e-47 |
| Msa1115980 | Msa1172870 | 0.805161 | 1.525563e-49 | -8.615850e-47 |
| Msa1121720 | Msa1172870 | -0.805455 | 1.323673e-49 | -8.615850e-47 |
| Msa1124220 | Msa1172870 | 0.803882 | 2.819863e-49 | -8.615850e-47 |
| Msa1129240 | Msa1172870 | 0.923649 | 2.009546e-89 | -8.615850e-47 |
| Msa1143060 | Msa1172870 | -0.818228 | 2.187407e-52 | -8.615850e-47 |
| Msa1146980 | Msa1172870 | 0.829709 | 4.423318e-55 | -8.615850e-47 |
| Msa1150740 | Msa1172870 | 0.801214 | 1.000706e-48 | -8.615850e-47 |
| Msa1172870 | Msa1184680 | 0.804196 | 2.425777e-49 | -8.615850e-47 |
| Msa1172870 | Msa1186340 | 0.803888 | 2.811508e-49 | -8.615850e-47 |
| Msa1172870 | Msa1191350 | 0.806344 | 8.608894e-50 | -8.615850e-47 |
| Msa1172870 | Msa1191530 | -0.815253 | 1.016408e-51 | -8.615850e-47 |
| Msa1172870 | Msa1197720 | 0.815802 | 7.672149e-52 | -8.615850e-47 |
| Msa1172870 | Msa1199540 | -0.829054 | 6.379699e-55 | -8.615850e-47 |
| Msa1172870 | Msa1202470 | 0.834766 | 2.479629e-56 | -8.615850e-47 |
| Msa1172870 | Msa1204870 | -0.813338 | 2.691860e-51 | -8.615850e-47 |
| Msa1172870 | Msa1204900 | -0.822821 | 1.929648e-53 | -8.615850e-47 |
| Msa1172870 | Msa1205270 | -0.808656 | 2.782679e-50 | -8.615850e-47 |
| Msa1172870 | Msa1209990 | -0.815292 | 9.964259e-52 | -8.615850e-47 |
| Msa1172870 | Msa1212150 | -0.814809 | 1.274855e-51 | -8.615850e-47 |
| Msa1172870 | Msa1212210 | -0.808780 | 2.617073e-50 | -8.615850e-47 |
| Msa1172870 | Msa1238250 | 0.803997 | 2.669277e-49 | -8.615850e-47 |
| Msa1172870 | Msa1254910 | 0.816367 | 5.734880e-52 | -8.615850e-47 |
| Msa1172870 | Msa1256490 | -0.818163 | 2.261847e-52 | -8.615850e-47 |
| Msa1172870 | Msa1266120 | -0.801589 | 8.384894e-49 | -8.615850e-47 |
| Msa1172870 | Msa1279200 | -0.822837 | 1.913160e-53 | -8.615850e-47 |
| Msa1172870 | Msa1281300 | 0.810961 | 8.881918e-51 | -8.615850e-47 |
| Msa1172870 | Msa1291070 | -0.800234 | 1.586022e-48 | -8.615850e-47 |
| Msa1172870 | Msa1296810 | -0.816914 | 4.325332e-52 | -8.615850e-47 |
| Msa1172870 | Msa1298480 | -0.815465 | 9.117332e-52 | -8.615850e-47 |
| Msa1172870 | Msa1303620 | -0.804442 | 2.156432e-49 | -8.615850e-47 |
| Msa1172870 | Msa1315880 | -0.806390 | 8.419851e-50 | -8.615850e-47 |
| Msa1172870 | Msa1319030 | 0.809606 | 1.741695e-50 | -8.615850e-47 |
| Msa1172870 | Msa1319190 | 0.801479 | 8.832194e-49 | -8.615850e-47 |
| Msa1172870 | Msa1328680 | -0.813421 | 2.582308e-51 | -8.615850e-47 |
| Msa1172870 | Msa1341710 | -0.806263 | 8.953124e-50 | -8.615850e-47 |
| Msa1172870 | Msa1342360 | -0.813803 | 2.127045e-51 | -8.615850e-47 |
| Msa1172870 | Msa1350590 | -0.800840 | 1.193524e-48 | -8.615850e-47 |
| Msa1172870 | Msa1356100 | -0.805955 | 1.039420e-49 | -8.615850e-47 |
| Msa1172870 | Msa1361580 | -0.817517 | 3.164725e-52 | -8.615850e-47 |
| Msa1172870 | Msa1366140 | -0.802566 | 5.278736e-49 | -8.615850e-47 |
| Msa1172870 | Msa1377980 | -0.822122 | 2.804792e-53 | -8.615850e-47 |
| Msa1172870 | Msa1384410 | -0.809754 | 1.618365e-50 | -8.615850e-47 |
| Msa1172870 | Msa1386910 | -0.813255 | 2.807426e-51 | -8.615850e-47 |
| Msa1172870 | Msa1395380 | -0.820064 | 8.355861e-53 | -8.615850e-47 |
| Msa1172870 | Msa1408230 | -0.803144 | 4.009824e-49 | -8.615850e-47 |
| Msa1172870 | Msa1408280 | -0.821381 | 4.161077e-53 | -8.615850e-47 |
| Msa1172870 | Msa1415510 | -0.803710 | 3.061550e-49 | -8.615850e-47 |
| Msa1172870 | Msa1434300 | 0.809735 | 1.633767e-50 | -8.615850e-47 |
| Msa1172870 | Msa1437590 | 0.804867 | 1.757697e-49 | -8.615850e-47 |
| Msa1172870 | Msa1444130 | -0.809427 | 1.902920e-50 | -8.615850e-47 |
| Msa1172870 | Msa1444690 | -0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa1172870 | Msa1445010 | 0.998884 | 2.105153e-280 | -8.615850e-47 |
| Msa1172870 | Msa1454300 | -0.822366 | 2.461540e-53 | -8.615850e-47 |
| Msa1172870 | Msa1459130 | -0.834710 | 2.560524e-56 | -8.615850e-47 |
| Msa0482830 | Msa1172870 | 0.805302 | 1.425364e-49 | -8.615850e-47 |
| Msa0490060 | Msa1172870 | 0.811613 | 6.414504e-51 | -8.615850e-47 |
| Msa0497680 | Msa1172870 | 0.806293 | 8.825579e-50 | -8.615850e-47 |
| Msa0514540 | Msa1172870 | 0.844847 | 5.864608e-59 | -8.615850e-47 |
| Msa0524710 | Msa1172870 | 0.805124 | 1.553161e-49 | -8.615850e-47 |
| Msa0538050 | Msa1172870 | -0.820379 | 7.077004e-53 | -8.615850e-47 |
| Msa0557440 | Msa1172870 | -0.812311 | 4.519828e-51 | -8.615850e-47 |
| Msa0569980 | Msa1172870 | -0.801501 | 8.741197e-49 | -8.615850e-47 |
| Msa0572730 | Msa1172870 | -0.825364 | 4.881209e-54 | -8.615850e-47 |
| Msa0580890 | Msa1172870 | -0.809279 | 2.047123e-50 | -8.615850e-47 |
| Msa0582270 | Msa1172870 | -0.818324 | 2.080667e-52 | -8.615850e-47 |
| Msa0583270 | Msa1172870 | -0.821747 | 3.424654e-53 | -8.615850e-47 |
| Msa0869320 | Msa1172870 | -0.809677 | 1.681096e-50 | -8.615850e-47 |
| Msa0870220 | Msa1172870 | -0.800482 | 1.411895e-48 | -8.615850e-47 |
| Msa0898830 | Msa1172870 | -0.814951 | 1.186270e-51 | -8.615850e-47 |
| Msa0903460 | Msa1172870 | -0.803348 | 3.638049e-49 | -8.615850e-47 |
| Msa0934290 | Msa1172870 | -0.820078 | 8.295067e-53 | -8.615850e-47 |
| Msa0935930 | Msa1172870 | -0.804859 | 1.764362e-49 | -8.615850e-47 |
| Msa0947550 | Msa1172870 | -0.816380 | 5.697787e-52 | -8.615850e-47 |
| Msa0967900 | Msa1172870 | -0.811152 | 8.075425e-51 | -8.615850e-47 |
| Msa0971780 | Msa1172870 | -0.820111 | 8.153106e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172870 | MtrunA17_Chr7g0273911 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172870 | AT3G04830.1 | 77.228 | 303 | 67 | 1 | 1 | 301 | 1 | 303 | 3.20e-174 | 484 |
| Msa1172870 | AT5G28220.1 | 75.748 | 301 | 70 | 1 | 1 | 298 | 14 | 314 | 4.41e-170 | 474 |
| Msa1172870 | AT3G04830.2 | 76.568 | 303 | 65 | 2 | 1 | 301 | 1 | 299 | 8.69e-170 | 473 |
Find 81 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGTTGTTATTGTTAAT+TGG | 0.183627 | 8_1:-3077253 | None:intergenic |
| AAGGCACAAGGCAATATTTC+TGG | 0.195163 | 8_1:+3079450 | Msa1172870:CDS |
| GATACCATCGGCGCCGAGTT+TGG | 0.277168 | 8_1:-3077511 | None:intergenic |
| CATAGTATTTCTTGGCAGTT+TGG | 0.300310 | 8_1:-3080075 | None:intergenic |
| AAAAGCGTACTCAAGCCTTT+TGG | 0.323791 | 8_1:+3078953 | Msa1172870:CDS |
| ATTGAAGAATCTAGAAATTC+AGG | 0.329036 | 8_1:+3077368 | Msa1172870:CDS |
| TGCTTGAAGCAAAAGGTTCC+TGG | 0.339375 | 8_1:+3078919 | Msa1172870:CDS |
| GCATCCACTATTGACTTAAC+TGG | 0.339789 | 8_1:+3080097 | Msa1172870:CDS |
| AGTGGATGCATAGTATTTCT+TGG | 0.360041 | 8_1:-3080083 | None:intergenic |
| ATAATCGATTTGTTGTTGTT+TGG | 0.363103 | 8_1:+3077300 | Msa1172870:five_prime_UTR |
| GGCTCTTCGGAAGAGGTTCC+CGG | 0.373643 | 8_1:+3078258 | Msa1172870:CDS |
| GTAAGTTGAGGAAGCTTGTC+AGG | 0.381715 | 8_1:-3080422 | None:intergenic |
| TTGTACAGATCATCCATAAA+AGG | 0.385579 | 8_1:+3079412 | Msa1172870:intron |
| GCTATTGCACAACTTACAAA+AGG | 0.390284 | 8_1:+3080317 | Msa1172870:CDS |
| GCCGAGTTTGGATCGGAGTT+TGG | 0.396111 | 8_1:-3077499 | None:intergenic |
| CGACAATGTTAAACTCTTCA+AGG | 0.399413 | 8_1:-3080450 | None:intergenic |
| GTAATCCTTCTCCAACGCTT+TGG | 0.411068 | 8_1:-3080387 | None:intergenic |
| CTAGAAATTCAGGTCGATAA+TGG | 0.415655 | 8_1:+3077378 | Msa1172870:CDS |
| TAATGGTGGCGGAGGAGCTT+GGG | 0.434613 | 8_1:+3077395 | Msa1172870:CDS |
| ATATTTCTGGGGCTATTGAA+TGG | 0.440932 | 8_1:+3079463 | Msa1172870:CDS |
| AGGCACAAGGCAATATTTCT+GGG | 0.444178 | 8_1:+3079451 | Msa1172870:CDS |
| AGTGATAGTGTGTGCGGTGC+TGG | 0.445537 | 8_1:+3077213 | Msa1172870:five_prime_UTR |
| TGCCAGGTACTTTATACGCT+TGG | 0.459506 | 8_1:+3080037 | Msa1172870:intron |
| AGAATGGACTTTGTATGAGC+AGG | 0.460189 | 8_1:+3077646 | Msa1172870:intron |
| ATACACTGACAACATGCATT+AGG | 0.460351 | 8_1:-3080709 | None:intergenic |
| AGCAAAAGGTTCCTGGGAAA+AGG | 0.464783 | 8_1:+3078926 | Msa1172870:CDS |
| TCAATGTCTTGATGTTGCTC+AGG | 0.464948 | 8_1:+3077691 | Msa1172870:CDS |
| CCATAAAAGGAGGGTGGCTA+TGG | 0.465139 | 8_1:+3079425 | Msa1172870:CDS |
| ACTAATTATTACAGGAAGGC+TGG | 0.465186 | 8_1:+3078887 | Msa1172870:intron |
| TCGATTATCGCTGGCCGCAC+GGG | 0.471016 | 8_1:-3077285 | None:intergenic |
| CAGGTACTTTATACGCTTGG+TGG | 0.479808 | 8_1:+3080040 | Msa1172870:intron |
| AGGACTGCACAAAGGCTCTT+CGG | 0.483997 | 8_1:+3078245 | Msa1172870:intron |
| ATCGATTATCGCTGGCCGCA+CGG | 0.490206 | 8_1:-3077286 | None:intergenic |
| ATATACTAGTAGTAGCGTAT+AGG | 0.490569 | 8_1:+3077186 | Msa1172870:five_prime_UTR |
| ATCTGTGAATTCAGCAAAGA+TGG | 0.496369 | 8_1:+3077323 | Msa1172870:exon |
| GCCTCCAGTTAAGTCAATAG+TGG | 0.499666 | 8_1:-3080101 | None:intergenic |
| GCAGGTTGCAGTTGCTGCTA+TGG | 0.502649 | 8_1:+3077664 | Msa1172870:CDS |
| ATAATGGTGGCGGAGGAGCT+TGG | 0.516076 | 8_1:+3077394 | Msa1172870:CDS |
| CAAGAGGATTGTCCTCCAAA+AGG | 0.518847 | 8_1:-3078968 | None:intergenic |
| AGTGAGTTTACTTGATCAAG+AGG | 0.519735 | 8_1:-3078984 | None:intergenic |
| GCATATGCTAAGTGATAAAG+TGG | 0.521109 | 8_1:-3079839 | None:intergenic |
| GCACAAAGGCTCTTCGGAAG+AGG | 0.521348 | 8_1:+3078251 | Msa1172870:CDS |
| AGCTCTCTTCGGTATATGCT+TGG | 0.521948 | 8_1:+3080135 | Msa1172870:CDS |
| GCTTGAAGCAAAAGGTTCCT+GGG | 0.534662 | 8_1:+3078920 | Msa1172870:CDS |
| GAGTTTGGAATCATTCAAGA+TGG | 0.538373 | 8_1:-3077484 | None:intergenic |
| AAGAATACCAGAGCTCTCTT+CGG | 0.539836 | 8_1:+3080124 | Msa1172870:CDS |
| GCAATGTTGCTTGAAGCAAA+AGG | 0.543383 | 8_1:+3078912 | Msa1172870:CDS |
| CGATCCAAACTCGGCGCCGA+TGG | 0.544519 | 8_1:+3077507 | Msa1172870:CDS |
| TTCAAGGCAGTTGTAAGTTG+AGG | 0.545844 | 8_1:-3080434 | None:intergenic |
| ATCTCTAGCAGCCAAAGCGT+TGG | 0.547628 | 8_1:+3080376 | Msa1172870:CDS |
| GCATATACCGAAGAGAGCTC+TGG | 0.553907 | 8_1:-3080131 | None:intergenic |
| AAGAACAAGGAAGATAAAGA+AGG | 0.555037 | 8_1:+3080341 | Msa1172870:CDS |
| TCCAAACTCCGATCCAAACT+CGG | 0.556249 | 8_1:+3077498 | Msa1172870:CDS |
| AGACAAATATTTATTACCGA+AGG | 0.556697 | 8_1:-3080631 | None:intergenic |
| TCATGGCAGATCACGATGCA+TGG | 0.557684 | 8_1:+3079625 | Msa1172870:CDS |
| TTCCCTCGTCAGAAAACTCA+AGG | 0.558152 | 8_1:+3077425 | Msa1172870:CDS |
| AACAACAAATCGATTATCGC+TGG | 0.564578 | 8_1:-3077294 | None:intergenic |
| CAGGTCGATAATGGTGGCGG+AGG | 0.567323 | 8_1:+3077387 | Msa1172870:CDS |
| CTATTGCACAACTTACAAAA+GGG | 0.580815 | 8_1:+3080318 | Msa1172870:CDS |
| AGCAGCCAAAGCGTTGGAGA+AGG | 0.584396 | 8_1:+3080382 | Msa1172870:CDS |
| TCTGATAAAGTCCTCAAGCA+TGG | 0.590101 | 8_1:+3077456 | Msa1172870:CDS |
| TACAGATCATCCATAAAAGG+AGG | 0.591043 | 8_1:+3079415 | Msa1172870:intron |
| TATTGAAGAGAAAATAAATG+AGG | 0.594099 | 8_1:-3080572 | None:intergenic |
| AAGGAGGGTGGCTATGGCAA+AGG | 0.598462 | 8_1:+3079431 | Msa1172870:CDS |
| CATCGGCGCCGAGTTTGGAT+CGG | 0.608680 | 8_1:-3077506 | None:intergenic |
| ATTCAGGTCGATAATGGTGG+CGG | 0.610159 | 8_1:+3077384 | Msa1172870:CDS |
| GTGGCTATGGCAAAGGCACA+AGG | 0.630715 | 8_1:+3079438 | Msa1172870:CDS |
| AGATGGACAATCCATGCTTG+AGG | 0.636709 | 8_1:-3077467 | None:intergenic |
| TTCCCGGAGAGCAAAAGAGT+TGG | 0.639248 | 8_1:+3078274 | Msa1172870:CDS |
| TCCACTATTGACTTAACTGG+AGG | 0.645324 | 8_1:+3080100 | Msa1172870:CDS |
| AAGTGATAAAGTGGTACAGT+TGG | 0.646636 | 8_1:-3079830 | None:intergenic |
| GAAATTCAGGTCGATAATGG+TGG | 0.656182 | 8_1:+3077381 | Msa1172870:CDS |
| ACAGATCATCCATAAAAGGA+GGG | 0.667416 | 8_1:+3079416 | Msa1172870:intron |
| ACTTACAAAAGGGAAGAACA+AGG | 0.669740 | 8_1:+3080328 | Msa1172870:CDS |
| GATCATCCATAAAAGGAGGG+TGG | 0.671561 | 8_1:+3079419 | Msa1172870:intron |
| TGAGGACTTTATCAGAACGA+CGG | 0.672947 | 8_1:-3077449 | None:intergenic |
| AATTATTACAGGAAGGCTGG+AGG | 0.673966 | 8_1:+3078890 | Msa1172870:intron |
| GGCACAAGGCAATATTTCTG+GGG | 0.681635 | 8_1:+3079452 | Msa1172870:CDS |
| AAAGATGGTAACGAAAACAG+AGG | 0.716729 | 8_1:+3077338 | Msa1172870:exon |
| GGAGTGAGTGATAGTGTGTG+CGG | 0.740781 | 8_1:+3077207 | Msa1172870:five_prime_UTR |
| AAATCGATCTAAAACCCGTG+CGG | 0.777382 | 8_1:+3077271 | Msa1172870:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTACTTTTTTATC+AGG | + | chr8_1:3078225-3078244 | Msa1172870:intron | 10.0% |
| !!! | AAAAAATTTAAAATTACAAG+CGG | + | chr8_1:3078419-3078438 | Msa1172870:intron | 10.0% |
| !! | AAAAAAAGTTCATATATATT+TGG | - | chr8_1:3079587-3079606 | None:intergenic | 10.0% |
| !!! | AAACATTATTTTAACTTAAA+TGG | + | chr8_1:3080011-3080030 | Msa1172870:intron | 10.0% |
| !! | ATATGTAAAACAAACTTATT+TGG | - | chr8_1:3078808-3078827 | None:intergenic | 15.0% |
| !! | ATCAATTAAAGATACTTATT+TGG | - | chr8_1:3078859-3078878 | None:intergenic | 15.0% |
| !!! | AAGTATCTTTAATTGATTTT+TGG | + | chr8_1:3078862-3078881 | Msa1172870:intron | 15.0% |
| !!! | TTATAACAATGACTAATTTT+TGG | + | chr8_1:3079087-3079106 | Msa1172870:intron | 15.0% |
| !!! | AATAACCAAATTTTCTTTTT+TGG | + | chr8_1:3079381-3079400 | Msa1172870:intron | 15.0% |
| !! | CAAATAAAAAAAAAACACAA+AGG | - | chr8_1:3079752-3079771 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAACAAACTTTT+TGG | + | chr8_1:3080500-3080519 | Msa1172870:three_prime_UTR | 15.0% |
| !!! | GATTTGTTGTTATTGTTAAT+TGG | - | chr8_1:3077256-3077275 | None:intergenic | 20.0% |
| !! | TTCACAATTAAACGAAATTT+AGG | - | chr8_1:3077545-3077564 | None:intergenic | 20.0% |
| !!! | TTGTAATTCTATGCTATTTA+GGG | + | chr8_1:3077805-3077824 | Msa1172870:intron | 20.0% |
| !!! | GTTTTTCTATTCATTAACTT+AGG | + | chr8_1:3077851-3077870 | Msa1172870:intron | 20.0% |
| !!! | AGTTTCTTTTAGCAAATTTT+TGG | + | chr8_1:3078696-3078715 | Msa1172870:intron | 20.0% |
| !!! | TTATTTGGAAATTTTCTAGT+GGG | - | chr8_1:3078844-3078863 | None:intergenic | 20.0% |
| !!! | TTTTGGTAACTAATTATTAC+AGG | + | chr8_1:3078879-3078898 | Msa1172870:intron | 20.0% |
| !! | TACCATATTAAATATGCAAT+CGG | - | chr8_1:3079253-3079272 | None:intergenic | 20.0% |
| !!! | AAGCAATATTTTCCTTTAAA+CGG | - | chr8_1:3079549-3079568 | None:intergenic | 20.0% |
| !! | ATAAAAATCATACATTTGCA+GGG | - | chr8_1:3079676-3079695 | None:intergenic | 20.0% |
| !! | AATAAAAATCATACATTTGC+AGG | - | chr8_1:3079677-3079696 | None:intergenic | 20.0% |
| !! | TATATGTGAACAATATATGA+AGG | - | chr8_1:3080255-3080274 | None:intergenic | 20.0% |
| !! | TATTGAAGAGAAAATAAATG+AGG | - | chr8_1:3080575-3080594 | None:intergenic | 20.0% |
| !!! | ATAATCGATTTGTTGTTGTT+TGG | + | chr8_1:3077300-3077319 | Msa1172870:five_prime_UTR | 25.0% |
| ! | ATTGAAGAATCTAGAAATTC+AGG | + | chr8_1:3077368-3077387 | Msa1172870:CDS | 25.0% |
| ! | TAGGTTTAAATTGATACCAT+CGG | - | chr8_1:3077526-3077545 | None:intergenic | 25.0% |
| ! | GAAAAACATTAAACCACAAT+TGG | - | chr8_1:3077592-3077611 | None:intergenic | 25.0% |
| !!! | GTTTTTTTGTTGATTCAGAA+TGG | + | chr8_1:3077630-3077649 | Msa1172870:intron | 25.0% |
| !! | TCATTTGTAACTCAATTTTG+TGG | + | chr8_1:3077755-3077774 | Msa1172870:intron | 25.0% |
| ! | AGAATTACAAGTGAATTTCA+CGG | - | chr8_1:3077795-3077814 | None:intergenic | 25.0% |
| !! | CTTGTAATTCTATGCTATTT+AGG | + | chr8_1:3077804-3077823 | Msa1172870:intron | 25.0% |
| ! | CATAAGACTTATCATATAAG+TGG | + | chr8_1:3077903-3077922 | Msa1172870:intron | 25.0% |
| ! | TAATTTCTGAATTTGGATAG+TGG | + | chr8_1:3078061-3078080 | Msa1172870:intron | 25.0% |
| ! | TAAACCTTTATACCTTTATG+TGG | + | chr8_1:3078099-3078118 | Msa1172870:intron | 25.0% |
| !! | AAAACTAGAGACTTTTAATC+AGG | - | chr8_1:3078183-3078202 | None:intergenic | 25.0% |
| !!! | GTCTCTAGTTTTAGAATTTA+TGG | + | chr8_1:3078191-3078210 | Msa1172870:intron | 25.0% |
| ! | TTGAGTCAATATAAGCTTAA+CGG | + | chr8_1:3078393-3078412 | Msa1172870:intron | 25.0% |
| ! | AAATTGCAATGATTAACCTT+TGG | + | chr8_1:3078528-3078547 | Msa1172870:intron | 25.0% |
| !! | TGTAGAAGTTTGAAATGTAA+AGG | - | chr8_1:3078576-3078595 | None:intergenic | 25.0% |
| !!! | CTTTTAGCAAATTTTTGGAT+TGG | + | chr8_1:3078701-3078720 | Msa1172870:intron | 25.0% |
| !! | CTTATTTGGAAATTTTCTAG+TGG | - | chr8_1:3078845-3078864 | None:intergenic | 25.0% |
| ! | TTGAGTAATGAAACCAAAAA+GGG | + | chr8_1:3079176-3079195 | Msa1172870:intron | 25.0% |
| !! | TACCGATTGCATATTTAATA+TGG | + | chr8_1:3079248-3079267 | Msa1172870:intron | 25.0% |
| ! | CAAAGCCAAAAAAGAAAATT+TGG | - | chr8_1:3079389-3079408 | None:intergenic | 25.0% |
| !!! | TTTTTATTTGTCTTCCTGTT+AGG | + | chr8_1:3079762-3079781 | Msa1172870:intron | 25.0% |
| !! | AATGTTTTATAACTCTTGCT+AGG | - | chr8_1:3079998-3080017 | None:intergenic | 25.0% |
| !! | GTTCTGTATTTTATTACCTT+CGG | + | chr8_1:3080615-3080634 | Msa1172870:three_prime_UTR | 25.0% |
| ! | AGACAAATATTTATTACCGA+AGG | - | chr8_1:3080634-3080653 | None:intergenic | 25.0% |
| ATATACTAGTAGTAGCGTAT+AGG | + | chr8_1:3077186-3077205 | Msa1172870:five_prime_UTR | 30.0% | |
| ! | CACTTGACTCTTTTATGATA+TGG | + | chr8_1:3077975-3077994 | Msa1172870:intron | 30.0% |
| GCTCTTGTAATTTCTGAATT+TGG | + | chr8_1:3078054-3078073 | Msa1172870:intron | 30.0% | |
| AGGCAACATAAAAAACATGA+TGG | - | chr8_1:3078126-3078145 | None:intergenic | 30.0% | |
| ! | TTTTTATGTTGCCTGAATTG+AGG | + | chr8_1:3078132-3078151 | Msa1172870:intron | 30.0% |
| ! | AGCAAATGTAACTGTTGTTT+AGG | + | chr8_1:3078491-3078510 | Msa1172870:intron | 30.0% |
| CATTACACTTTGAGTATACT+TGG | - | chr8_1:3078615-3078634 | None:intergenic | 30.0% | |
| TTGCTAAAAGAAACTAGAAC+TGG | - | chr8_1:3078691-3078710 | None:intergenic | 30.0% | |
| !! | TTAGCAAATTTTTGGATTGG+TGG | + | chr8_1:3078704-3078723 | Msa1172870:intron | 30.0% |
| !!! | TAGCAAATTTTTGGATTGGT+GGG | + | chr8_1:3078705-3078724 | Msa1172870:intron | 30.0% |
| ATGATTTCCATTCTTTCAAG+AGG | + | chr8_1:3078740-3078759 | Msa1172870:intron | 30.0% | |
| TGATTTCCATTCTTTCAAGA+GGG | + | chr8_1:3078741-3078760 | Msa1172870:intron | 30.0% | |
| GGTAACTAATTATTACAGGA+AGG | + | chr8_1:3078883-3078902 | Msa1172870:intron | 30.0% | |
| AACTCACTTAACCTTACTAT+CGG | + | chr8_1:3078999-3079018 | Msa1172870:intron | 30.0% | |
| TAAGATTTATGCTTCATCAC+CGG | - | chr8_1:3079070-3079089 | None:intergenic | 30.0% | |
| GTTGAGTAATGAAACCAAAA+AGG | + | chr8_1:3079175-3079194 | Msa1172870:intron | 30.0% | |
| !! | TCTTACTTTGCATTTTCAAG+AGG | + | chr8_1:3079274-3079293 | Msa1172870:intron | 30.0% |
| TTGTACAGATCATCCATAAA+AGG | + | chr8_1:3079412-3079431 | Msa1172870:intron | 30.0% | |
| TGAAATTGAAGACCGTTTAA+AGG | + | chr8_1:3079534-3079553 | Msa1172870:intron | 30.0% | |
| GCAACAGAAATAAATCACTA+CGG | - | chr8_1:3079715-3079734 | None:intergenic | 30.0% | |
| AAGTATCTACTCTATGAGTT+AGG | + | chr8_1:3079868-3079887 | Msa1172870:intron | 30.0% | |
| ATTTGAATATAGTCCTGCTT+TGG | + | chr8_1:3080210-3080229 | Msa1172870:intron | 30.0% | |
| CTATTGCACAACTTACAAAA+GGG | + | chr8_1:3080318-3080337 | Msa1172870:CDS | 30.0% | |
| AAGAACAAGGAAGATAAAGA+AGG | + | chr8_1:3080341-3080360 | Msa1172870:CDS | 30.0% | |
| AACAACAAATCGATTATCGC+TGG | - | chr8_1:3077297-3077316 | None:intergenic | 35.0% | |
| ATCTGTGAATTCAGCAAAGA+TGG | + | chr8_1:3077323-3077342 | Msa1172870:exon | 35.0% | |
| ! | AAAGATGGTAACGAAAACAG+AGG | + | chr8_1:3077338-3077357 | Msa1172870:exon | 35.0% |
| CTAGAAATTCAGGTCGATAA+TGG | + | chr8_1:3077378-3077397 | Msa1172870:CDS | 35.0% | |
| ! | GAGTTTGGAATCATTCAAGA+TGG | - | chr8_1:3077487-3077506 | None:intergenic | 35.0% |
| AAGTCAACTACTTCCAATTG+TGG | + | chr8_1:3077576-3077595 | Msa1172870:intron | 35.0% | |
| TCATTAACTTAGGCTCTGTT+TGG | + | chr8_1:3077861-3077880 | Msa1172870:intron | 35.0% | |
| ! | TGGACCACATAAAGGTATAA+AGG | - | chr8_1:3078106-3078125 | None:intergenic | 35.0% |
| !! | AAACATGATGGACCACATAA+AGG | - | chr8_1:3078114-3078133 | None:intergenic | 35.0% |
| ATGTAGCAAATCCTCAATTC+AGG | - | chr8_1:3078146-3078165 | None:intergenic | 35.0% | |
| ! | AGACTTTTAATCAGGCATGA+AGG | - | chr8_1:3078175-3078194 | None:intergenic | 35.0% |
| ! | TTTTTATCAGGACTGCACAA+AGG | + | chr8_1:3078237-3078256 | Msa1172870:intron | 35.0% |
| !! | AACCTTTGGCATCTTTGTTT+TGG | + | chr8_1:3078542-3078561 | Msa1172870:intron | 35.0% |
| !!! | ACCTTTGGCATCTTTGTTTT+GGG | + | chr8_1:3078543-3078562 | Msa1172870:intron | 35.0% |
| GAACTGGACATCAATAATCA+GGG | - | chr8_1:3078675-3078694 | None:intergenic | 35.0% | |
| AGAACTGGACATCAATAATC+AGG | - | chr8_1:3078676-3078695 | None:intergenic | 35.0% | |
| ACTAATTATTACAGGAAGGC+TGG | + | chr8_1:3078887-3078906 | Msa1172870:intron | 35.0% | |
| AGTGAGTTTACTTGATCAAG+AGG | - | chr8_1:3078987-3079006 | None:intergenic | 35.0% | |
| ACTCACTTAACCTTACTATC+GGG | + | chr8_1:3079000-3079019 | Msa1172870:intron | 35.0% | |
| AAGATTTATGCTTCATCACC+GGG | - | chr8_1:3079069-3079088 | None:intergenic | 35.0% | |
| CTTTAACCTTCTAATAGTCC+AGG | + | chr8_1:3079149-3079168 | Msa1172870:intron | 35.0% | |
| !! | TAGTATTAGGTTGCCCTTTT+TGG | - | chr8_1:3079192-3079211 | None:intergenic | 35.0% |
| TAGTGAGGCTCTATAGTATT+AGG | - | chr8_1:3079205-3079224 | None:intergenic | 35.0% | |
| !! | TACTTTGCATTTTCAAGAGG+CGG | + | chr8_1:3079277-3079296 | Msa1172870:intron | 35.0% |
| ATTGTTACTCAAGAAAGCCT+AGG | - | chr8_1:3079364-3079383 | None:intergenic | 35.0% | |
| TACAGATCATCCATAAAAGG+AGG | + | chr8_1:3079415-3079434 | Msa1172870:intron | 35.0% | |
| ACAGATCATCCATAAAAGGA+GGG | + | chr8_1:3079416-3079435 | Msa1172870:intron | 35.0% | |
| !! | ATATTTCTGGGGCTATTGAA+TGG | + | chr8_1:3079463-3079482 | Msa1172870:CDS | 35.0% |
| AACGGTCTTCAATTTCAGAT+GGG | - | chr8_1:3079531-3079550 | None:intergenic | 35.0% | |
| AAACGGTCTTCAATTTCAGA+TGG | - | chr8_1:3079532-3079551 | None:intergenic | 35.0% | |
| ! | TCCTCATTTTCACAGATTCA+TGG | + | chr8_1:3079608-3079627 | Msa1172870:intron | 35.0% |
| AATCACTACGGAAAGAGAAA+CGG | - | chr8_1:3079703-3079722 | None:intergenic | 35.0% | |
| AAGTGATAAAGTGGTACAGT+TGG | - | chr8_1:3079833-3079852 | None:intergenic | 35.0% | |
| GCATATGCTAAGTGATAAAG+TGG | - | chr8_1:3079842-3079861 | None:intergenic | 35.0% | |
| TTATTAGAGTGAAGAAACCC+GGG | - | chr8_1:3079932-3079951 | None:intergenic | 35.0% | |
| GTTATTAGAGTGAAGAAACC+CGG | - | chr8_1:3079933-3079952 | None:intergenic | 35.0% | |
| !! | TTAACTTAAATGGTGTTGCC+AGG | + | chr8_1:3080021-3080040 | Msa1172870:intron | 35.0% |
| CATAGTATTTCTTGGCAGTT+TGG | - | chr8_1:3080078-3080097 | None:intergenic | 35.0% | |
| AGTGGATGCATAGTATTTCT+TGG | - | chr8_1:3080086-3080105 | None:intergenic | 35.0% | |
| !! | TGGTGAGTGTTTATTTTCTG+TGG | + | chr8_1:3080155-3080174 | Msa1172870:intron | 35.0% |
| CAGAATCGTGAACTTGTAAA+TGG | - | chr8_1:3080188-3080207 | None:intergenic | 35.0% | |
| TGATATCTACTAACCAAAGC+AGG | - | chr8_1:3080226-3080245 | None:intergenic | 35.0% | |
| GCTATTGCACAACTTACAAA+AGG | + | chr8_1:3080317-3080336 | Msa1172870:CDS | 35.0% | |
| ACTTACAAAAGGGAAGAACA+AGG | + | chr8_1:3080328-3080347 | Msa1172870:CDS | 35.0% | |
| CGACAATGTTAAACTCTTCA+AGG | - | chr8_1:3080453-3080472 | None:intergenic | 35.0% | |
| ! | AAGACATGTGAAGCTTTTGT+TGG | + | chr8_1:3080655-3080674 | Msa1172870:three_prime_UTR | 35.0% |
| ATACACTGACAACATGCATT+AGG | - | chr8_1:3080712-3080731 | None:intergenic | 35.0% | |
| ! | AAATCGATCTAAAACCCGTG+CGG | + | chr8_1:3077271-3077290 | Msa1172870:five_prime_UTR | 40.0% |
| ! | GAAATTCAGGTCGATAATGG+TGG | + | chr8_1:3077381-3077400 | Msa1172870:CDS | 40.0% |
| TGAGGACTTTATCAGAACGA+CGG | - | chr8_1:3077452-3077471 | None:intergenic | 40.0% | |
| TCTGATAAAGTCCTCAAGCA+TGG | + | chr8_1:3077456-3077475 | Msa1172870:CDS | 40.0% | |
| ! | AGAATGGACTTTGTATGAGC+AGG | + | chr8_1:3077646-3077665 | Msa1172870:intron | 40.0% |
| TCAATGTCTTGATGTTGCTC+AGG | + | chr8_1:3077691-3077710 | Msa1172870:CDS | 40.0% | |
| TAGGGAATCTTATGCATAGC+TGG | + | chr8_1:3077823-3077842 | Msa1172870:intron | 40.0% | |
| TGAGAGATCCATGTGTTAGA+TGG | + | chr8_1:3078004-3078023 | Msa1172870:intron | 40.0% | |
| ATCCATGTGTTAGATGGTAC+TGG | + | chr8_1:3078010-3078029 | Msa1172870:intron | 40.0% | |
| AACCAGTACCATCTAACACA+TGG | - | chr8_1:3078015-3078034 | None:intergenic | 40.0% | |
| ! | TTACCAACTCTTTTGCTCTC+CGG | - | chr8_1:3078280-3078299 | None:intergenic | 40.0% |
| AGCAACTTAAATCCACAGCA+CGG | - | chr8_1:3078331-3078350 | None:intergenic | 40.0% | |
| !! | AGTAGCAACTGTTAGGTTGA+TGG | - | chr8_1:3078367-3078386 | None:intergenic | 40.0% |
| AGACAGCTGTTACATTTGCA+GGG | - | chr8_1:3078467-3078486 | None:intergenic | 40.0% | |
| TAGACAGCTGTTACATTTGC+AGG | - | chr8_1:3078468-3078487 | None:intergenic | 40.0% | |
| TGCAAATGTAACAGCTGTCT+AGG | + | chr8_1:3078467-3078486 | Msa1172870:intron | 40.0% | |
| ACCCAAAACAAAGATGCCAA+AGG | - | chr8_1:3078547-3078566 | None:intergenic | 40.0% | |
| GGACATCAATAATCAGGGAA+CGG | - | chr8_1:3078670-3078689 | None:intergenic | 40.0% | |
| TAGCATCCCTCTTGAAAGAA+TGG | - | chr8_1:3078750-3078769 | None:intergenic | 40.0% | |
| AATTATTACAGGAAGGCTGG+AGG | + | chr8_1:3078890-3078909 | Msa1172870:intron | 40.0% | |
| ! | GCAATGTTGCTTGAAGCAAA+AGG | + | chr8_1:3078912-3078931 | Msa1172870:CDS | 40.0% |
| !! | AAAAGCGTACTCAAGCCTTT+TGG | + | chr8_1:3078953-3078972 | Msa1172870:CDS | 40.0% |
| CTCACTTAACCTTACTATCG+GGG | + | chr8_1:3079001-3079020 | Msa1172870:intron | 40.0% | |
| ACCTTACTATCGGGGAAAAA+AGG | + | chr8_1:3079009-3079028 | Msa1172870:intron | 40.0% | |
| CCTTACTATCGGGGAAAAAA+GGG | + | chr8_1:3079010-3079029 | Msa1172870:intron | 40.0% | |
| CTTACTATCGGGGAAAAAAG+GGG | + | chr8_1:3079011-3079030 | Msa1172870:intron | 40.0% | |
| GTTAGTTGATCAGTTACTCC+CGG | + | chr8_1:3079048-3079067 | Msa1172870:intron | 40.0% | |
| ACTATAGAGCCTCACTATAG+TGG | + | chr8_1:3079208-3079227 | Msa1172870:intron | 40.0% | |
| CTATAGAGCCTCACTATAGT+GGG | + | chr8_1:3079209-3079228 | Msa1172870:intron | 40.0% | |
| ! | CCTCACTATAGTGGGATTTA+GGG | + | chr8_1:3079217-3079236 | Msa1172870:intron | 40.0% |
| ! | CTCACTATAGTGGGATTTAG+GGG | + | chr8_1:3079218-3079237 | Msa1172870:intron | 40.0% |
| AAGGCACAAGGCAATATTTC+TGG | + | chr8_1:3079450-3079469 | Msa1172870:CDS | 40.0% | |
| AGGCACAAGGCAATATTTCT+GGG | + | chr8_1:3079451-3079470 | Msa1172870:CDS | 40.0% | |
| GCCATGAATCTGTGAAAATG+AGG | - | chr8_1:3079612-3079631 | None:intergenic | 40.0% | |
| GCTGCTTGTTTATACCTAAC+AGG | - | chr8_1:3079779-3079798 | None:intergenic | 40.0% | |
| !! | CATCTCTAGGACGCAATATT+CGG | - | chr8_1:3079965-3079984 | None:intergenic | 40.0% |
| TATTGCGTCCTAGAGATGTA+TGG | + | chr8_1:3079967-3079986 | Msa1172870:intron | 40.0% | |
| ATTGCGTCCTAGAGATGTAT+GGG | + | chr8_1:3079968-3079987 | Msa1172870:intron | 40.0% | |
| AGGTAAACCCATACATCTCT+AGG | - | chr8_1:3079978-3079997 | None:intergenic | 40.0% | |
| !! | GCATCCACTATTGACTTAAC+TGG | + | chr8_1:3080097-3080116 | Msa1172870:CDS | 40.0% |
| !! | TCCACTATTGACTTAACTGG+AGG | + | chr8_1:3080100-3080119 | Msa1172870:CDS | 40.0% |
| AAGAATACCAGAGCTCTCTT+CGG | + | chr8_1:3080124-3080143 | Msa1172870:CDS | 40.0% | |
| TTCAAGGCAGTTGTAAGTTG+AGG | - | chr8_1:3080437-3080456 | None:intergenic | 40.0% | |
| ! | ATTCAGGTCGATAATGGTGG+CGG | + | chr8_1:3077384-3077403 | Msa1172870:CDS | 45.0% |
| TTCCCTCGTCAGAAAACTCA+AGG | + | chr8_1:3077425-3077444 | Msa1172870:CDS | 45.0% | |
| ! | GACCTTGAGTTTTCTGACGA+GGG | - | chr8_1:3077430-3077449 | None:intergenic | 45.0% |
| AGATGGACAATCCATGCTTG+AGG | - | chr8_1:3077470-3077489 | None:intergenic | 45.0% | |
| TCCAAACTCCGATCCAAACT+CGG | + | chr8_1:3077498-3077517 | Msa1172870:CDS | 45.0% | |
| GAGTCAAGTGACAAGAGACA+GGG | - | chr8_1:3077965-3077984 | None:intergenic | 45.0% | |
| AGAGTCAAGTGACAAGAGAC+AGG | - | chr8_1:3077966-3077985 | None:intergenic | 45.0% | |
| ! | TACCAACTCTTTTGCTCTCC+GGG | - | chr8_1:3078279-3078298 | None:intergenic | 45.0% |
| AGCAGACAGTAGCAACTGTT+AGG | - | chr8_1:3078374-3078393 | None:intergenic | 45.0% | |
| ! | GTGTGCAGTTGCTTGTGTTT+TGG | - | chr8_1:3078648-3078667 | None:intergenic | 45.0% |
| TGCTTGAAGCAAAAGGTTCC+TGG | + | chr8_1:3078919-3078938 | Msa1172870:CDS | 45.0% | |
| GCTTGAAGCAAAAGGTTCCT+GGG | + | chr8_1:3078920-3078939 | Msa1172870:CDS | 45.0% | |
| AGCAAAAGGTTCCTGGGAAA+AGG | + | chr8_1:3078926-3078945 | Msa1172870:CDS | 45.0% | |
| CAAGAGGATTGTCCTCCAAA+AGG | - | chr8_1:3078971-3078990 | None:intergenic | 45.0% | |
| !!! | CCCTTTTTTCCCCGATAGTA+AGG | - | chr8_1:3079013-3079032 | None:intergenic | 45.0% |
| AACCTTCTAATAGTCCAGGC+TGG | + | chr8_1:3079153-3079172 | Msa1172870:intron | 45.0% | |
| AACCAGCCTGGACTATTAGA+AGG | - | chr8_1:3079158-3079177 | None:intergenic | 45.0% | |
| GTTTCATTACTCAACCAGCC+TGG | - | chr8_1:3079170-3079189 | None:intergenic | 45.0% | |
| ! | GCCTCACTATAGTGGGATTT+AGG | + | chr8_1:3079216-3079235 | Msa1172870:intron | 45.0% |
| CCCTAAATCCCACTATAGTG+AGG | - | chr8_1:3079220-3079239 | None:intergenic | 45.0% | |
| ! | ACTATAGTGGGATTTAGGGG+AGG | + | chr8_1:3079221-3079240 | Msa1172870:intron | 45.0% |
| ! | CTATAGTGGGATTTAGGGGA+GGG | + | chr8_1:3079222-3079241 | Msa1172870:intron | 45.0% |
| GATCATCCATAAAAGGAGGG+TGG | + | chr8_1:3079419-3079438 | Msa1172870:intron | 45.0% | |
| ! | GGCACAAGGCAATATTTCTG+GGG | + | chr8_1:3079452-3079471 | Msa1172870:CDS | 45.0% |
| ! | ACAAGCAGCATTTTGCTACG+AGG | + | chr8_1:3079790-3079809 | Msa1172870:CDS | 45.0% |
| TGCCAGGTACTTTATACGCT+TGG | + | chr8_1:3080037-3080056 | Msa1172870:intron | 45.0% | |
| ! | CACCAAGCGTATAAAGTACC+TGG | - | chr8_1:3080042-3080061 | None:intergenic | 45.0% |
| CAGGTACTTTATACGCTTGG+TGG | + | chr8_1:3080040-3080059 | Msa1172870:intron | 45.0% | |
| GCCTCCAGTTAAGTCAATAG+TGG | - | chr8_1:3080104-3080123 | None:intergenic | 45.0% | |
| AGCTCTCTTCGGTATATGCT+TGG | + | chr8_1:3080135-3080154 | Msa1172870:CDS | 45.0% | |
| GTAATCCTTCTCCAACGCTT+TGG | - | chr8_1:3080390-3080409 | None:intergenic | 45.0% | |
| ! | GTAAGTTGAGGAAGCTTGTC+AGG | - | chr8_1:3080425-3080444 | None:intergenic | 45.0% |
| ! | GGAGTGAGTGATAGTGTGTG+CGG | + | chr8_1:3077207-3077226 | Msa1172870:five_prime_UTR | 50.0% |
| ! | GGACCTTGAGTTTTCTGACG+AGG | - | chr8_1:3077431-3077450 | None:intergenic | 50.0% |
| GAGACAGGGAAGAGTCTGTT+TGG | - | chr8_1:3077951-3077970 | None:intergenic | 50.0% | |
| AGGACTGCACAAAGGCTCTT+CGG | + | chr8_1:3078245-3078264 | Msa1172870:intron | 50.0% | |
| TTCCCGGAGAGCAAAAGAGT+TGG | + | chr8_1:3078274-3078293 | Msa1172870:CDS | 50.0% | |
| TCTACGTCTTTACCGTGCTG+TGG | + | chr8_1:3078316-3078335 | Msa1172870:intron | 50.0% | |
| ! | GCAGGGCTCTATCTAAGATC+AGG | - | chr8_1:3078450-3078469 | None:intergenic | 50.0% |
| !!! | CGCTTTTTCTGCCTTTTCCC+AGG | - | chr8_1:3078940-3078959 | None:intergenic | 50.0% |
| ! | AGCGTACTCAAGCCTTTTGG+AGG | + | chr8_1:3078956-3078975 | Msa1172870:CDS | 50.0% |
| ACTATCGGGGAAAAAAGGGG+AGG | + | chr8_1:3079014-3079033 | Msa1172870:intron | 50.0% | |
| CTATCGGGGAAAAAAGGGGA+GGG | + | chr8_1:3079015-3079034 | Msa1172870:intron | 50.0% | |
| TATCGGGGAAAAAAGGGGAG+GGG | + | chr8_1:3079016-3079035 | Msa1172870:intron | 50.0% | |
| ACCTGTTATCTCCCGTCACA+CGG | + | chr8_1:3079318-3079337 | Msa1172870:intron | 50.0% | |
| TTGGAGTTGCTTCCGTGTGA+CGG | - | chr8_1:3079333-3079352 | None:intergenic | 50.0% | |
| ! | CCATAGCCACCCTCCTTTTA+TGG | - | chr8_1:3079428-3079447 | None:intergenic | 50.0% |
| CCATAAAAGGAGGGTGGCTA+TGG | + | chr8_1:3079425-3079444 | Msa1172870:CDS | 50.0% | |
| TCATGGCAGATCACGATGCA+TGG | + | chr8_1:3079625-3079644 | Msa1172870:CDS | 50.0% | |
| TCAAATTCTTCCCCGTCTCC+CGG | + | chr8_1:3079911-3079930 | Msa1172870:intron | 50.0% | |
| GCATATACCGAAGAGAGCTC+TGG | - | chr8_1:3080134-3080153 | None:intergenic | 50.0% | |
| ! | GTGCAATAGCAGAAGTGCAC+TGG | - | chr8_1:3080307-3080326 | None:intergenic | 50.0% |
| ATCTCTAGCAGCCAAAGCGT+TGG | + | chr8_1:3080376-3080395 | Msa1172870:CDS | 50.0% | |
| ! | AGTGATAGTGTGTGCGGTGC+TGG | + | chr8_1:3077213-3077232 | Msa1172870:five_prime_UTR | 55.0% |
| ATCGATTATCGCTGGCCGCA+CGG | - | chr8_1:3077289-3077308 | None:intergenic | 55.0% | |
| !! | ATAATGGTGGCGGAGGAGCT+TGG | + | chr8_1:3077394-3077413 | Msa1172870:CDS | 55.0% |
| !! | TAATGGTGGCGGAGGAGCTT+GGG | + | chr8_1:3077395-3077414 | Msa1172870:CDS | 55.0% |
| GCCGAGTTTGGATCGGAGTT+TGG | - | chr8_1:3077502-3077521 | None:intergenic | 55.0% | |
| GCAGGTTGCAGTTGCTGCTA+TGG | + | chr8_1:3077664-3077683 | Msa1172870:CDS | 55.0% | |
| GCACAAAGGCTCTTCGGAAG+AGG | + | chr8_1:3078251-3078270 | Msa1172870:CDS | 55.0% | |
| ATCGGGGAAAAAAGGGGAGG+GGG | + | chr8_1:3079017-3079036 | Msa1172870:intron | 55.0% | |
| ! | TCCGTGTGACGGGAGATAAC+AGG | - | chr8_1:3079322-3079341 | None:intergenic | 55.0% |
| TGGAGTTGCTTCCGTGTGAC+GGG | - | chr8_1:3079332-3079351 | None:intergenic | 55.0% | |
| CAACTCCAACTGTTGCGCCT+AGG | + | chr8_1:3079344-3079363 | Msa1172870:intron | 55.0% | |
| GAAAGCCTAGGCGCAACAGT+TGG | - | chr8_1:3079352-3079371 | None:intergenic | 55.0% | |
| AAGGAGGGTGGCTATGGCAA+AGG | + | chr8_1:3079431-3079450 | Msa1172870:CDS | 55.0% | |
| ! | GTGGCTATGGCAAAGGCACA+AGG | + | chr8_1:3079438-3079457 | Msa1172870:CDS | 55.0% |
| CAAATTCTTCCCCGTCTCCC+GGG | + | chr8_1:3079912-3079931 | Msa1172870:intron | 55.0% | |
| AGTGAAGAAACCCGGGAGAC+GGG | - | chr8_1:3079925-3079944 | None:intergenic | 55.0% | |
| GAGTGAAGAAACCCGGGAGA+CGG | - | chr8_1:3079926-3079945 | None:intergenic | 55.0% | |
| !! | AGCAGCCAAAGCGTTGGAGA+AGG | + | chr8_1:3080382-3080401 | Msa1172870:CDS | 55.0% |
| TCGATTATCGCTGGCCGCAC+GGG | - | chr8_1:3077288-3077307 | None:intergenic | 60.0% | |
| !! | CAGGTCGATAATGGTGGCGG+AGG | + | chr8_1:3077387-3077406 | Msa1172870:CDS | 60.0% |
| ! | CATCGGCGCCGAGTTTGGAT+CGG | - | chr8_1:3077509-3077528 | None:intergenic | 60.0% |
| ! | GATACCATCGGCGCCGAGTT+TGG | - | chr8_1:3077514-3077533 | None:intergenic | 60.0% |
| GGCTCTTCGGAAGAGGTTCC+CGG | + | chr8_1:3078258-3078277 | Msa1172870:CDS | 60.0% | |
| TCGGGGAAAAAAGGGGAGGG+GGG | + | chr8_1:3079018-3079037 | Msa1172870:intron | 60.0% | |
| GTGAAGAAACCCGGGAGACG+GGG | - | chr8_1:3079924-3079943 | None:intergenic | 60.0% | |
| ! | CGATCCAAACTCGGCGCCGA+TGG | + | chr8_1:3077507-3077526 | Msa1172870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 3077178 | 3080757 | 3077178 | ID=Msa1172870;Name=Msa1172870 |
| chr8_1 | mRNA | 3077178 | 3080757 | 3077178 | ID=Msa1172870-mRNA-1;Parent=Msa1172870;Name=Msa1172870-mRNA-1;_AED=0.08;_eAED=0.08;_QI=164|1|1|1|1|1|9|279|302 |
| chr8_1 | exon | 3077178 | 3077528 | 3077178 | ID=Msa1172870-mRNA-1:exon:1046;Parent=Msa1172870-mRNA-1 |
| chr8_1 | exon | 3077648 | 3077712 | 3077648 | ID=Msa1172870-mRNA-1:exon:1047;Parent=Msa1172870-mRNA-1 |
| chr8_1 | exon | 3078247 | 3078295 | 3078247 | ID=Msa1172870-mRNA-1:exon:1048;Parent=Msa1172870-mRNA-1 |
| chr8_1 | exon | 3078901 | 3078995 | 3078901 | ID=Msa1172870-mRNA-1:exon:1049;Parent=Msa1172870-mRNA-1 |
| chr8_1 | exon | 3079420 | 3079505 | 3079420 | ID=Msa1172870-mRNA-1:exon:1050;Parent=Msa1172870-mRNA-1 |
| chr8_1 | exon | 3079623 | 3079682 | 3079623 | ID=Msa1172870-mRNA-1:exon:1051;Parent=Msa1172870-mRNA-1 |
| chr8_1 | exon | 3079784 | 3079865 | 3079784 | ID=Msa1172870-mRNA-1:exon:1052;Parent=Msa1172870-mRNA-1 |
| chr8_1 | exon | 3080043 | 3080156 | 3080043 | ID=Msa1172870-mRNA-1:exon:1053;Parent=Msa1172870-mRNA-1 |
| chr8_1 | exon | 3080308 | 3080757 | 3080308 | ID=Msa1172870-mRNA-1:exon:1054;Parent=Msa1172870-mRNA-1 |
| chr8_1 | five_prime_UTR | 3077178 | 3077341 | 3077178 | ID=Msa1172870-mRNA-1:five_prime_utr;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3077342 | 3077528 | 3077342 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3077648 | 3077712 | 3077648 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3078247 | 3078295 | 3078247 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3078901 | 3078995 | 3078901 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3079420 | 3079505 | 3079420 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3079623 | 3079682 | 3079623 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3079784 | 3079865 | 3079784 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3080043 | 3080156 | 3080043 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | CDS | 3080308 | 3080478 | 3080308 | ID=Msa1172870-mRNA-1:cds;Parent=Msa1172870-mRNA-1 |
| chr8_1 | three_prime_UTR | 3080479 | 3080757 | 3080479 | ID=Msa1172870-mRNA-1:three_prime_utr;Parent=Msa1172870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
