Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187660 | XP_003626415.1 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187660 | sp|Q6INS3|EMC2A_XENLA | 39.700 | 267 | 157 | 3 | 32 | 298 | 23 | 285 | 2.61e-58 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187660 | G7L1T5 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa0187660 | -0.817084 | 3.961225e-52 | -8.615850e-47 |
| Msa0011060 | Msa0187660 | -0.821312 | 4.317581e-53 | -8.615850e-47 |
| Msa0011100 | Msa0187660 | -0.810159 | 1.324297e-50 | -8.615850e-47 |
| Msa0011410 | Msa0187660 | -0.821304 | 4.334428e-53 | -8.615850e-47 |
| Msa0011440 | Msa0187660 | -0.807966 | 3.904914e-50 | -8.615850e-47 |
| Msa0017710 | Msa0187660 | 0.803795 | 2.939455e-49 | -8.615850e-47 |
| Msa0039750 | Msa0187660 | 0.802578 | 5.250402e-49 | -8.615850e-47 |
| Msa0050320 | Msa0187660 | -0.806615 | 7.548743e-50 | -8.615850e-47 |
| Msa0056230 | Msa0187660 | -0.814542 | 1.460801e-51 | -8.615850e-47 |
| Msa0074860 | Msa0187660 | -0.800307 | 1.532648e-48 | -8.615850e-47 |
| Msa0105140 | Msa0187660 | -0.813551 | 2.416934e-51 | -8.615850e-47 |
| Msa0127350 | Msa0187660 | -0.803910 | 2.781965e-49 | -8.615850e-47 |
| Msa0141410 | Msa0187660 | 0.807015 | 6.211612e-50 | -8.615850e-47 |
| Msa0151380 | Msa0187660 | -0.807921 | 3.990151e-50 | -8.615850e-47 |
| Msa0154720 | Msa0187660 | -0.806024 | 1.005618e-49 | -8.615850e-47 |
| Msa0187660 | Msa0189150 | -0.819832 | 9.440553e-53 | -8.615850e-47 |
| Msa0187660 | Msa0190890 | 0.801396 | 9.182352e-49 | -8.615850e-47 |
| Msa0187660 | Msa0212950 | -0.804748 | 1.861596e-49 | -8.615850e-47 |
| Msa0187660 | Msa0225070 | -0.828080 | 1.096456e-54 | -8.615850e-47 |
| Msa0187660 | Msa0225280 | -0.804512 | 2.084641e-49 | -8.615850e-47 |
| Msa0187660 | Msa0229350 | -0.812317 | 4.506077e-51 | -8.615850e-47 |
| Msa0187660 | Msa0242720 | 0.823310 | 1.483953e-53 | -8.615850e-47 |
| Msa0187660 | Msa0253230 | -0.806998 | 6.263730e-50 | -8.615850e-47 |
| Msa0187660 | Msa0261350 | -0.803541 | 3.318596e-49 | -8.615850e-47 |
| Msa0187660 | Msa0266140 | -0.818112 | 2.323502e-52 | -8.615850e-47 |
| Msa0187660 | Msa0267510 | -0.802279 | 6.049144e-49 | -8.615850e-47 |
| Msa0187660 | Msa0270730 | -0.822291 | 2.563010e-53 | -8.615850e-47 |
| Msa0187660 | Msa0292060 | -0.802122 | 6.517619e-49 | -8.615850e-47 |
| Msa0187660 | Msa0299130 | -0.815883 | 7.359637e-52 | -8.615850e-47 |
| Msa0187660 | Msa0304060 | -0.800416 | 1.455898e-48 | -8.615850e-47 |
| Msa0187660 | Msa0328870 | 0.809544 | 1.795869e-50 | -8.615850e-47 |
| Msa0187660 | Msa0331070 | -0.803304 | 3.715523e-49 | -8.615850e-47 |
| Msa0187660 | Msa0340700 | -0.807153 | 5.808229e-50 | -8.615850e-47 |
| Msa0187660 | Msa0343230 | -0.823959 | 1.045643e-53 | -8.615850e-47 |
| Msa0187660 | Msa0358470 | 0.823058 | 1.699406e-53 | -8.615850e-47 |
| Msa0187660 | Msa0363180 | -0.800389 | 1.474940e-48 | -8.615850e-47 |
| Msa0187660 | Msa0364030 | -0.816642 | 4.978535e-52 | -8.615850e-47 |
| Msa0187660 | Msa0364910 | -0.805481 | 1.307431e-49 | -8.615850e-47 |
| Msa0187660 | Msa0373550 | 0.832803 | 7.672577e-56 | -8.615850e-47 |
| Msa0187660 | Msa0387630 | -0.807093 | 5.981954e-50 | -8.615850e-47 |
| Msa0187660 | Msa0403740 | -0.816014 | 6.878392e-52 | -8.615850e-47 |
| Msa0187660 | Msa0412580 | -0.815507 | 8.924619e-52 | -8.615850e-47 |
| Msa0187660 | Msa0419150 | -0.811314 | 7.446928e-51 | -8.615850e-47 |
| Msa0187660 | Msa0422070 | 0.821123 | 4.772469e-53 | -8.615850e-47 |
| Msa0187660 | Msa0422230 | -0.816542 | 5.240025e-52 | -8.615850e-47 |
| Msa0187660 | Msa0428720 | -0.809238 | 2.088910e-50 | -8.615850e-47 |
| Msa0187660 | Msa0433090 | 0.826433 | 2.720583e-54 | -8.615850e-47 |
| Msa0187660 | Msa0456450 | -0.815850 | 7.485305e-52 | -8.615850e-47 |
| Msa0187660 | Msa0457070 | -0.817259 | 3.618414e-52 | -8.615850e-47 |
| Msa0187660 | Msa0464980 | -0.813652 | 2.296656e-51 | -8.615850e-47 |
| Msa0187660 | Msa0468660 | 0.819987 | 8.701064e-53 | -8.615850e-47 |
| Msa0187660 | Msa0472820 | 0.806948 | 6.419332e-50 | -8.615850e-47 |
| Msa0187660 | Msa0482830 | 0.803250 | 3.813330e-49 | -8.615850e-47 |
| Msa0187660 | Msa0490060 | 0.812095 | 5.038081e-51 | -8.615850e-47 |
| Msa0187660 | Msa0497680 | 0.810813 | 9.563208e-51 | -8.615850e-47 |
| Msa0187660 | Msa0514540 | 0.843170 | 1.652044e-58 | -8.615850e-47 |
| Msa0187660 | Msa0524710 | 0.810123 | 1.348007e-50 | -8.615850e-47 |
| Msa0187660 | Msa0538050 | -0.820978 | 5.153475e-53 | -8.615850e-47 |
| Msa0187660 | Msa0557440 | -0.812356 | 4.417958e-51 | -8.615850e-47 |
| Msa0187660 | Msa0572730 | -0.825696 | 4.071519e-54 | -8.615850e-47 |
| Msa0187660 | Msa0580890 | -0.810055 | 1.394023e-50 | -8.615850e-47 |
| Msa0187660 | Msa0582270 | -0.818856 | 1.575827e-52 | -8.615850e-47 |
| Msa0187660 | Msa0583270 | -0.821603 | 3.699172e-53 | -8.615850e-47 |
| Msa0187660 | Msa0603310 | 0.804364 | 2.237818e-49 | -8.615850e-47 |
| Msa0187660 | Msa0605150 | -0.801355 | 9.361432e-49 | -8.615850e-47 |
| Msa0187660 | Msa0606600 | 0.802566 | 5.278861e-49 | -8.615850e-47 |
| Msa0187660 | Msa0615070 | 0.809891 | 1.511837e-50 | -8.615850e-47 |
| Msa0187660 | Msa0616890 | -0.813249 | 2.816379e-51 | -8.615850e-47 |
| Msa0187660 | Msa0647300 | 0.807424 | 5.089106e-50 | -8.615850e-47 |
| Msa0187660 | Msa0654400 | -0.817660 | 2.938013e-52 | -8.615850e-47 |
| Msa0187660 | Msa0654500 | -0.808637 | 2.808658e-50 | -8.615850e-47 |
| Msa0187660 | Msa0676570 | -0.829548 | 4.841304e-55 | -8.615850e-47 |
| Msa0187660 | Msa0685810 | -0.805894 | 1.070999e-49 | -8.615850e-47 |
| Msa0187660 | Msa0685860 | -0.803363 | 3.612807e-49 | -8.615850e-47 |
| Msa0187660 | Msa0686830 | 0.815497 | 8.971266e-52 | -8.615850e-47 |
| Msa0187660 | Msa0695250 | -0.801366 | 9.314932e-49 | -8.615850e-47 |
| Msa0187660 | Msa0701800 | -0.837072 | 6.450288e-57 | -8.615850e-47 |
| Msa0187660 | Msa0707330 | 0.800607 | 1.331315e-48 | -8.615850e-47 |
| Msa0187660 | Msa0720490 | 0.812387 | 4.349272e-51 | -8.615850e-47 |
| Msa0187660 | Msa0732970 | 0.809505 | 1.830874e-50 | -8.615850e-47 |
| Msa0187660 | Msa0738460 | -0.804260 | 2.352264e-49 | -8.615850e-47 |
| Msa0187660 | Msa0742690 | -0.807793 | 4.249182e-50 | -8.615850e-47 |
| Msa0187660 | Msa0773960 | 0.809238 | 2.089015e-50 | -8.615850e-47 |
| Msa0187660 | Msa0779830 | -0.812614 | 3.879659e-51 | -8.615850e-47 |
| Msa0187660 | Msa0794900 | -0.807459 | 5.002387e-50 | -8.615850e-47 |
| Msa0187660 | Msa0829250 | -0.802521 | 5.393592e-49 | -8.615850e-47 |
| Msa0187660 | Msa0831460 | -0.800678 | 1.287459e-48 | -8.615850e-47 |
| Msa0187660 | Msa0841670 | 0.808335 | 3.257944e-50 | -8.615850e-47 |
| Msa0187660 | Msa0869320 | -0.808539 | 2.947661e-50 | -8.615850e-47 |
| Msa0187660 | Msa0898830 | -0.810762 | 9.812403e-51 | -8.615850e-47 |
| Msa0187660 | Msa0901270 | 0.800220 | 1.596629e-48 | -8.615850e-47 |
| Msa0187660 | Msa0903460 | -0.801344 | 9.410884e-49 | -8.615850e-47 |
| Msa0187660 | Msa0934290 | -0.819612 | 1.060084e-52 | -8.615850e-47 |
| Msa0187660 | Msa0935930 | -0.802456 | 5.562916e-49 | -8.615850e-47 |
| Msa0187660 | Msa0947550 | -0.815746 | 7.892021e-52 | -8.615850e-47 |
| Msa0187660 | Msa0967900 | -0.813207 | 2.876717e-51 | -8.615850e-47 |
| Msa0187660 | Msa0971780 | -0.819495 | 1.127369e-52 | -8.615850e-47 |
| Msa0187660 | Msa0998660 | -0.801023 | 1.094630e-48 | -8.615850e-47 |
| Msa0187660 | Msa1001120 | 0.821428 | 4.058595e-53 | -8.615850e-47 |
| Msa0187660 | Msa1002550 | -0.808832 | 2.551376e-50 | -8.615850e-47 |
| Msa0187660 | Msa1003920 | 0.800081 | 1.703599e-48 | -8.615850e-47 |
| Msa0187660 | Msa1014550 | -0.810416 | 1.165403e-50 | -8.615850e-47 |
| Msa0187660 | Msa1016580 | -0.810136 | 1.339164e-50 | -8.615850e-47 |
| Msa0187660 | Msa1025440 | -0.809379 | 1.948062e-50 | -8.615850e-47 |
| Msa0187660 | Msa1035050 | 0.815092 | 1.103754e-51 | -8.615850e-47 |
| Msa0187660 | Msa1039150 | -0.802658 | 5.053200e-49 | -8.615850e-47 |
| Msa0187660 | Msa1041250 | 0.801009 | 1.101939e-48 | -8.615850e-47 |
| Msa0187660 | Msa1055520 | -0.808121 | 3.617823e-50 | -8.615850e-47 |
| Msa0187660 | Msa1056890 | 0.806735 | 7.120847e-50 | -8.615850e-47 |
| Msa0187660 | Msa1075090 | 0.826485 | 2.643532e-54 | -8.615850e-47 |
| Msa0187660 | Msa1085820 | 0.813145 | 2.967636e-51 | -8.615850e-47 |
| Msa0187660 | Msa1088400 | -0.804952 | 1.687546e-49 | -8.615850e-47 |
| Msa0187660 | Msa1093190 | -0.813151 | 2.960092e-51 | -8.615850e-47 |
| Msa0187660 | Msa1115980 | 0.805930 | 1.052556e-49 | -8.615850e-47 |
| Msa0187660 | Msa1121720 | -0.804659 | 1.942183e-49 | -8.615850e-47 |
| Msa0187660 | Msa1124220 | 0.808632 | 2.815567e-50 | -8.615850e-47 |
| Msa0187660 | Msa1129240 | 0.919780 | 2.932639e-87 | -8.615850e-47 |
| Msa0187660 | Msa1130150 | -0.800619 | 1.323747e-48 | -8.615850e-47 |
| Msa0187660 | Msa1143060 | -0.819415 | 1.175329e-52 | -8.615850e-47 |
| Msa0187660 | Msa1146980 | 0.829907 | 3.959071e-55 | -8.615850e-47 |
| Msa0187660 | Msa1150740 | 0.803367 | 3.606851e-49 | -8.615850e-47 |
| Msa0187660 | Msa1172870 | 0.998972 | 3.734073e-284 | -8.615850e-47 |
| Msa0187660 | Msa1184680 | 0.804974 | 1.669227e-49 | -8.615850e-47 |
| Msa0187660 | Msa1186340 | 0.803335 | 3.660980e-49 | -8.615850e-47 |
| Msa0187660 | Msa1191350 | 0.806036 | 9.997555e-50 | -8.615850e-47 |
| Msa0187660 | Msa1191530 | -0.816169 | 6.352632e-52 | -8.615850e-47 |
| Msa0187660 | Msa1197720 | 0.815069 | 1.116851e-51 | -8.615850e-47 |
| Msa0187660 | Msa1199540 | -0.829608 | 4.680172e-55 | -8.615850e-47 |
| Msa0187660 | Msa1202470 | 0.833490 | 5.176893e-56 | -8.615850e-47 |
| Msa0187660 | Msa1204870 | -0.814621 | 1.403809e-51 | -8.615850e-47 |
| Msa0187660 | Msa1204900 | -0.824320 | 8.605958e-54 | -8.615850e-47 |
| Msa0187660 | Msa1205270 | -0.809429 | 1.900553e-50 | -8.615850e-47 |
| Msa0187660 | Msa1209990 | -0.816226 | 6.167709e-52 | -8.615850e-47 |
| Msa0187660 | Msa1212150 | -0.815452 | 9.179545e-52 | -8.615850e-47 |
| Msa0187660 | Msa1212210 | -0.809629 | 1.721383e-50 | -8.615850e-47 |
| Msa0187660 | Msa1238250 | 0.802828 | 4.660911e-49 | -8.615850e-47 |
| Msa0187660 | Msa1254910 | 0.816127 | 6.490951e-52 | -8.615850e-47 |
| Msa0187660 | Msa1256490 | -0.819148 | 1.352011e-52 | -8.615850e-47 |
| Msa0187660 | Msa1266120 | -0.802656 | 5.059250e-49 | -8.615850e-47 |
| Msa0187660 | Msa1279200 | -0.824153 | 9.417791e-54 | -8.615850e-47 |
| Msa0187660 | Msa1281300 | 0.811412 | 7.091851e-51 | -8.615850e-47 |
| Msa0187660 | Msa1291070 | -0.802904 | 4.496365e-49 | -8.615850e-47 |
| Msa0187660 | Msa1296810 | -0.818102 | 2.335724e-52 | -8.615850e-47 |
| Msa0187660 | Msa1298480 | -0.816459 | 5.471125e-52 | -8.615850e-47 |
| Msa0187660 | Msa1303620 | -0.804007 | 2.655789e-49 | -8.615850e-47 |
| Msa0187660 | Msa1315880 | -0.805555 | 1.261574e-49 | -8.615850e-47 |
| Msa0187660 | Msa1319030 | 0.808253 | 3.392005e-50 | -8.615850e-47 |
| Msa0187660 | Msa1319190 | 0.801578 | 8.427342e-49 | -8.615850e-47 |
| Msa0187660 | Msa1328680 | -0.814725 | 1.331194e-51 | -8.615850e-47 |
| Msa0187660 | Msa1341710 | -0.806889 | 6.604955e-50 | -8.615850e-47 |
| Msa0187660 | Msa1342360 | -0.815611 | 8.458343e-52 | -8.615850e-47 |
| Msa0187660 | Msa1350590 | -0.801945 | 7.084950e-49 | -8.615850e-47 |
| Msa0187660 | Msa1356100 | -0.805185 | 1.508384e-49 | -8.615850e-47 |
| Msa0187660 | Msa1361580 | -0.818569 | 1.830650e-52 | -8.615850e-47 |
| Msa0187660 | Msa1364690 | 0.801689 | 7.998820e-49 | -8.615850e-47 |
| Msa0187660 | Msa1366140 | -0.802748 | 4.842984e-49 | -8.615850e-47 |
| Msa0187660 | Msa1377980 | -0.822428 | 2.381626e-53 | -8.615850e-47 |
| Msa0187660 | Msa1384410 | -0.807425 | 5.086164e-50 | -8.615850e-47 |
| Msa0187660 | Msa1386910 | -0.814030 | 1.896018e-51 | -8.615850e-47 |
| Msa0187660 | Msa1395380 | -0.820909 | 5.346171e-53 | -8.615850e-47 |
| Msa0187660 | Msa1408230 | -0.803744 | 3.012173e-49 | -8.615850e-47 |
| Msa0187660 | Msa1408280 | -0.821702 | 3.507622e-53 | -8.615850e-47 |
| Msa0187660 | Msa1415510 | -0.803681 | 3.104227e-49 | -8.615850e-47 |
| Msa0187660 | Msa1434300 | 0.809125 | 2.208077e-50 | -8.615850e-47 |
| Msa0187660 | Msa1437590 | 0.809855 | 1.539772e-50 | -8.615850e-47 |
| Msa0187660 | Msa1444130 | -0.809688 | 1.671692e-50 | -8.615850e-47 |
| Msa0187660 | Msa1444690 | -0.804094 | 2.547535e-49 | -8.615850e-47 |
| Msa0187660 | Msa1445010 | 0.999442 | 5.340975e-312 | -8.615850e-47 |
| Msa0187660 | Msa1454300 | -0.822937 | 1.813363e-53 | -8.615850e-47 |
| Msa0187660 | Msa1459130 | -0.833402 | 5.445774e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187660 | MtrunA17_Chr7g0273911 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187660 | AT3G04830.1 | 77.228 | 303 | 67 | 1 | 1 | 301 | 1 | 303 | 3.20e-174 | 484 |
| Msa0187660 | AT5G28220.1 | 75.748 | 301 | 70 | 1 | 1 | 298 | 14 | 314 | 4.41e-170 | 474 |
| Msa0187660 | AT3G04830.2 | 76.568 | 303 | 65 | 2 | 1 | 301 | 1 | 299 | 8.69e-170 | 473 |
Find 81 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGTTGTTATTGTTAAT+TGG | 0.183627 | 2_1:-2364752 | None:intergenic |
| AAGGCACAAGGCAATATTTC+TGG | 0.195163 | 2_1:+2366951 | Msa0187660:CDS |
| GATACCATCGGCGCCGAGTT+TGG | 0.277168 | 2_1:-2365010 | None:intergenic |
| CATAGTATTTCTTGGCAGTT+TGG | 0.300310 | 2_1:-2367576 | None:intergenic |
| AAAAGCGTACTCAAGCCTTT+TGG | 0.323791 | 2_1:+2366453 | Msa0187660:CDS |
| ATTGAAGAATCTAGAAATTC+AGG | 0.329036 | 2_1:+2364867 | Msa0187660:CDS |
| TGCTTGAAGCAAAAGGTTCC+TGG | 0.339375 | 2_1:+2366419 | Msa0187660:CDS |
| GCATCCACTATTGACTTAAC+TGG | 0.339789 | 2_1:+2367598 | Msa0187660:CDS |
| AGTGGATGCATAGTATTTCT+TGG | 0.360041 | 2_1:-2367584 | None:intergenic |
| ATAATCGATTTGTTGTTGTT+TGG | 0.363103 | 2_1:+2364799 | Msa0187660:five_prime_UTR |
| GGCTCTTCGGAAGAGGTTCC+CGG | 0.373643 | 2_1:+2365757 | Msa0187660:CDS |
| GTAAGTTGAGGAAGCTTGTC+AGG | 0.381715 | 2_1:-2367923 | None:intergenic |
| TTGTACAGATCATCCATAAA+AGG | 0.385579 | 2_1:+2366913 | Msa0187660:intron |
| GCTATTGCACAACTTACAAA+AGG | 0.390284 | 2_1:+2367818 | Msa0187660:CDS |
| GCCGAGTTTGGATCGGAGTT+TGG | 0.396111 | 2_1:-2364998 | None:intergenic |
| CGACAATGTTAAACTCTTCA+AGG | 0.399413 | 2_1:-2367951 | None:intergenic |
| GTAATCCTTCTCCAACGCTT+TGG | 0.411068 | 2_1:-2367888 | None:intergenic |
| CTAGAAATTCAGGTCGATAA+TGG | 0.415655 | 2_1:+2364877 | Msa0187660:CDS |
| TAATGGTGGCGGAGGAGCTT+GGG | 0.434613 | 2_1:+2364894 | Msa0187660:CDS |
| ATATTTCTGGGGCTATTGAA+TGG | 0.440932 | 2_1:+2366964 | Msa0187660:CDS |
| AGGCACAAGGCAATATTTCT+GGG | 0.444178 | 2_1:+2366952 | Msa0187660:CDS |
| AGTGATAGTGTGTGCGGTGC+TGG | 0.445537 | 2_1:+2364712 | Msa0187660:five_prime_UTR |
| TGCCAGGTACTTTATACGCT+TGG | 0.459506 | 2_1:+2367538 | Msa0187660:intron |
| AGAATGGACTTTGTATGAGC+AGG | 0.460189 | 2_1:+2365145 | Msa0187660:intron |
| ATACACTGACAACATGCATT+AGG | 0.460351 | 2_1:-2368210 | None:intergenic |
| AGCAAAAGGTTCCTGGGAAA+AGG | 0.464783 | 2_1:+2366426 | Msa0187660:CDS |
| TCAATGTCTTGATGTTGCTC+AGG | 0.464948 | 2_1:+2365190 | Msa0187660:CDS |
| CCATAAAAGGAGGGTGGCTA+TGG | 0.465139 | 2_1:+2366926 | Msa0187660:CDS |
| ACTAATTATTACAGGAAGGC+TGG | 0.465186 | 2_1:+2366387 | Msa0187660:intron |
| TCGATTATCGCTGGCCGCAC+GGG | 0.471016 | 2_1:-2364784 | None:intergenic |
| CAGGTACTTTATACGCTTGG+TGG | 0.479808 | 2_1:+2367541 | Msa0187660:intron |
| AGGACTGCACAAAGGCTCTT+CGG | 0.483997 | 2_1:+2365744 | Msa0187660:intron |
| ATCGATTATCGCTGGCCGCA+CGG | 0.490206 | 2_1:-2364785 | None:intergenic |
| ATATACTAGTAGTAGCGTAT+AGG | 0.490569 | 2_1:+2364685 | Msa0187660:five_prime_UTR |
| ATCTGTGAATTCAGCAAAGA+TGG | 0.496369 | 2_1:+2364822 | Msa0187660:exon |
| GCCTCCAGTTAAGTCAATAG+TGG | 0.499666 | 2_1:-2367602 | None:intergenic |
| GCAGGTTGCAGTTGCTGCTA+TGG | 0.502649 | 2_1:+2365163 | Msa0187660:CDS |
| ATAATGGTGGCGGAGGAGCT+TGG | 0.516076 | 2_1:+2364893 | Msa0187660:CDS |
| CAAGAGGATTGTCCTCCAAA+AGG | 0.518847 | 2_1:-2366468 | None:intergenic |
| AGTGAGTTTACTTGATCAAG+AGG | 0.519735 | 2_1:-2366484 | None:intergenic |
| GCATATGCTAAGTGATAAAG+TGG | 0.521109 | 2_1:-2367340 | None:intergenic |
| GCACAAAGGCTCTTCGGAAG+AGG | 0.521348 | 2_1:+2365750 | Msa0187660:CDS |
| AGCTCTCTTCGGTATATGCT+TGG | 0.521948 | 2_1:+2367636 | Msa0187660:CDS |
| GCTTGAAGCAAAAGGTTCCT+GGG | 0.534662 | 2_1:+2366420 | Msa0187660:CDS |
| GAGTTTGGAATCATTCAAGA+TGG | 0.538373 | 2_1:-2364983 | None:intergenic |
| AAGAATACCAGAGCTCTCTT+CGG | 0.539836 | 2_1:+2367625 | Msa0187660:CDS |
| GCAATGTTGCTTGAAGCAAA+AGG | 0.543383 | 2_1:+2366412 | Msa0187660:CDS |
| CGATCCAAACTCGGCGCCGA+TGG | 0.544519 | 2_1:+2365006 | Msa0187660:CDS |
| TTCAAGGCAGTTGTAAGTTG+AGG | 0.545844 | 2_1:-2367935 | None:intergenic |
| ATCTCTAGCAGCCAAAGCGT+TGG | 0.547628 | 2_1:+2367877 | Msa0187660:CDS |
| GCATATACCGAAGAGAGCTC+TGG | 0.553907 | 2_1:-2367632 | None:intergenic |
| AAGAACAAGGAAGATAAAGA+AGG | 0.555037 | 2_1:+2367842 | Msa0187660:CDS |
| TCCAAACTCCGATCCAAACT+CGG | 0.556249 | 2_1:+2364997 | Msa0187660:CDS |
| AGACAAATATTTATTACCGA+AGG | 0.556697 | 2_1:-2368132 | None:intergenic |
| TCATGGCAGATCACGATGCA+TGG | 0.557684 | 2_1:+2367126 | Msa0187660:CDS |
| TTCCCTCGTCAGAAAACTCA+AGG | 0.558152 | 2_1:+2364924 | Msa0187660:CDS |
| AACAACAAATCGATTATCGC+TGG | 0.564578 | 2_1:-2364793 | None:intergenic |
| CAGGTCGATAATGGTGGCGG+AGG | 0.567323 | 2_1:+2364886 | Msa0187660:CDS |
| CTATTGCACAACTTACAAAA+GGG | 0.580815 | 2_1:+2367819 | Msa0187660:CDS |
| AGCAGCCAAAGCGTTGGAGA+AGG | 0.584396 | 2_1:+2367883 | Msa0187660:CDS |
| TCTGATAAAGTCCTCAAGCA+TGG | 0.590101 | 2_1:+2364955 | Msa0187660:CDS |
| TACAGATCATCCATAAAAGG+AGG | 0.591043 | 2_1:+2366916 | Msa0187660:intron |
| TATTGAAGAGAAAATAAATG+AGG | 0.594099 | 2_1:-2368073 | None:intergenic |
| AAGGAGGGTGGCTATGGCAA+AGG | 0.598462 | 2_1:+2366932 | Msa0187660:CDS |
| CATCGGCGCCGAGTTTGGAT+CGG | 0.608680 | 2_1:-2365005 | None:intergenic |
| ATTCAGGTCGATAATGGTGG+CGG | 0.610159 | 2_1:+2364883 | Msa0187660:CDS |
| GTGGCTATGGCAAAGGCACA+AGG | 0.630715 | 2_1:+2366939 | Msa0187660:CDS |
| AGATGGACAATCCATGCTTG+AGG | 0.636709 | 2_1:-2364966 | None:intergenic |
| TTCCCGGAGAGCAAAAGAGT+TGG | 0.639248 | 2_1:+2365773 | Msa0187660:CDS |
| TCCACTATTGACTTAACTGG+AGG | 0.645324 | 2_1:+2367601 | Msa0187660:CDS |
| AAGTGATAAAGTGGTACAGT+TGG | 0.646636 | 2_1:-2367331 | None:intergenic |
| GAAATTCAGGTCGATAATGG+TGG | 0.656182 | 2_1:+2364880 | Msa0187660:CDS |
| ACAGATCATCCATAAAAGGA+GGG | 0.667416 | 2_1:+2366917 | Msa0187660:intron |
| ACTTACAAAAGGGAAGAACA+AGG | 0.669740 | 2_1:+2367829 | Msa0187660:CDS |
| GATCATCCATAAAAGGAGGG+TGG | 0.671561 | 2_1:+2366920 | Msa0187660:intron |
| TGAGGACTTTATCAGAACGA+CGG | 0.672947 | 2_1:-2364948 | None:intergenic |
| AATTATTACAGGAAGGCTGG+AGG | 0.673966 | 2_1:+2366390 | Msa0187660:intron |
| GGCACAAGGCAATATTTCTG+GGG | 0.681635 | 2_1:+2366953 | Msa0187660:CDS |
| AAAGATGGTAACGAAAACAG+AGG | 0.716729 | 2_1:+2364837 | Msa0187660:exon |
| GGAGTGAGTGATAGTGTGTG+CGG | 0.740781 | 2_1:+2364706 | Msa0187660:five_prime_UTR |
| AAATCGATCTAAAACCCGTG+CGG | 0.777382 | 2_1:+2364770 | Msa0187660:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTACTTTTTTATC+AGG | + | chr2_1:2365724-2365743 | Msa0187660:intron | 10.0% |
| !! | AAAAAAATTAAAATTACAAG+CGG | + | chr2_1:2365918-2365937 | Msa0187660:intron | 10.0% |
| !! | AAAAAAAGTTCATATATATT+TGG | - | chr2_1:2367088-2367107 | None:intergenic | 10.0% |
| !!! | AAACATTATTTTAACTTAAA+TGG | + | chr2_1:2367512-2367531 | Msa0187660:intron | 10.0% |
| !! | ATATGTAAAACAAACTTATT+TGG | - | chr2_1:2366308-2366327 | None:intergenic | 15.0% |
| !! | ATCAATTAAAGATACTTATT+TGG | - | chr2_1:2366359-2366378 | None:intergenic | 15.0% |
| !!! | AAGTATCTTTAATTGATTTT+TGG | + | chr2_1:2366362-2366381 | Msa0187660:intron | 15.0% |
| !!! | TTATAACAATGACTAATTTT+TGG | + | chr2_1:2366588-2366607 | Msa0187660:intron | 15.0% |
| !!! | AATAACCAAATTTTCTTTTT+TGG | + | chr2_1:2366882-2366901 | Msa0187660:intron | 15.0% |
| !! | CAAATAAAAAAAAAACACAA+AGG | - | chr2_1:2367253-2367272 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAACAAACTTTT+TGG | + | chr2_1:2368001-2368020 | Msa0187660:three_prime_UTR | 15.0% |
| !!! | GATTTGTTGTTATTGTTAAT+TGG | - | chr2_1:2364755-2364774 | None:intergenic | 20.0% |
| !! | TTCACAATTAAACGAAATTT+AGG | - | chr2_1:2365044-2365063 | None:intergenic | 20.0% |
| !!! | TTGTAATTCTATGCTATTTA+GGG | + | chr2_1:2365304-2365323 | Msa0187660:intron | 20.0% |
| !!! | GTTTTTCTATTCATTAACTT+AGG | + | chr2_1:2365350-2365369 | Msa0187660:intron | 20.0% |
| !!! | AGTTTCTTTTAGCAAATTTT+TGG | + | chr2_1:2366195-2366214 | Msa0187660:intron | 20.0% |
| !!! | TTATTTGGAAATTTTCTAGT+GGG | - | chr2_1:2366344-2366363 | None:intergenic | 20.0% |
| !!! | TTTTGGTAACTAATTATTAC+AGG | + | chr2_1:2366379-2366398 | Msa0187660:intron | 20.0% |
| !! | TACCATATTAAATATGCAAT+CGG | - | chr2_1:2366754-2366773 | None:intergenic | 20.0% |
| !!! | AAGCAATATTTTCCTTTAAA+CGG | - | chr2_1:2367050-2367069 | None:intergenic | 20.0% |
| !! | ATAAAAATCATACATTTGCA+GGG | - | chr2_1:2367177-2367196 | None:intergenic | 20.0% |
| !! | AATAAAAATCATACATTTGC+AGG | - | chr2_1:2367178-2367197 | None:intergenic | 20.0% |
| !! | TATATGTGAACAATATATGA+AGG | - | chr2_1:2367756-2367775 | None:intergenic | 20.0% |
| !! | TATTGAAGAGAAAATAAATG+AGG | - | chr2_1:2368076-2368095 | None:intergenic | 20.0% |
| !!! | ATAATCGATTTGTTGTTGTT+TGG | + | chr2_1:2364799-2364818 | Msa0187660:five_prime_UTR | 25.0% |
| ! | ATTGAAGAATCTAGAAATTC+AGG | + | chr2_1:2364867-2364886 | Msa0187660:CDS | 25.0% |
| ! | TAGGTTTAAATTGATACCAT+CGG | - | chr2_1:2365025-2365044 | None:intergenic | 25.0% |
| ! | GAAAAACATTAAACCACAAT+TGG | - | chr2_1:2365091-2365110 | None:intergenic | 25.0% |
| !!! | GTTTTTTTGTTGATTCAGAA+TGG | + | chr2_1:2365129-2365148 | Msa0187660:intron | 25.0% |
| !! | TCATTTGTAACTCAATTTTG+TGG | + | chr2_1:2365254-2365273 | Msa0187660:intron | 25.0% |
| ! | AGAATTACAAGTGAATTTCA+CGG | - | chr2_1:2365294-2365313 | None:intergenic | 25.0% |
| !! | CTTGTAATTCTATGCTATTT+AGG | + | chr2_1:2365303-2365322 | Msa0187660:intron | 25.0% |
| ! | CATAAGACTTATCATATAAG+TGG | + | chr2_1:2365402-2365421 | Msa0187660:intron | 25.0% |
| ! | TAATTTCTGAATTTGGATAG+TGG | + | chr2_1:2365560-2365579 | Msa0187660:intron | 25.0% |
| ! | TAAACCTTTATACCTTTATG+TGG | + | chr2_1:2365598-2365617 | Msa0187660:intron | 25.0% |
| !! | AAAACTAGAGACTTTTAATC+AGG | - | chr2_1:2365682-2365701 | None:intergenic | 25.0% |
| !!! | GTCTCTAGTTTTAGAATTTA+TGG | + | chr2_1:2365690-2365709 | Msa0187660:intron | 25.0% |
| ! | TTGAGTCAATATAAGCTTAA+CGG | + | chr2_1:2365892-2365911 | Msa0187660:intron | 25.0% |
| ! | AAATTGCAATGATTAACCTT+TGG | + | chr2_1:2366027-2366046 | Msa0187660:intron | 25.0% |
| !! | TGTAGAAGTTTGAAATGTAA+AGG | - | chr2_1:2366075-2366094 | None:intergenic | 25.0% |
| !!! | CTTTTAGCAAATTTTTGGAT+TGG | + | chr2_1:2366200-2366219 | Msa0187660:intron | 25.0% |
| !! | CTTATTTGGAAATTTTCTAG+TGG | - | chr2_1:2366345-2366364 | None:intergenic | 25.0% |
| ! | TTGAGTAATGAAACCAAAAA+GGG | + | chr2_1:2366677-2366696 | Msa0187660:intron | 25.0% |
| !! | TACCGATTGCATATTTAATA+TGG | + | chr2_1:2366749-2366768 | Msa0187660:intron | 25.0% |
| ! | CAAAGCCAAAAAAGAAAATT+TGG | - | chr2_1:2366890-2366909 | None:intergenic | 25.0% |
| !!! | TTTTTATTTGTCTTCCTGTT+AGG | + | chr2_1:2367263-2367282 | Msa0187660:intron | 25.0% |
| !! | AATGTTTTATAACTCTTGCT+AGG | - | chr2_1:2367499-2367518 | None:intergenic | 25.0% |
| !! | GTTCTGTATTTTATTACCTT+CGG | + | chr2_1:2368116-2368135 | Msa0187660:three_prime_UTR | 25.0% |
| ! | AGACAAATATTTATTACCGA+AGG | - | chr2_1:2368135-2368154 | None:intergenic | 25.0% |
| ATATACTAGTAGTAGCGTAT+AGG | + | chr2_1:2364685-2364704 | Msa0187660:five_prime_UTR | 30.0% | |
| ! | CACTTGACTCTTTTATGATA+TGG | + | chr2_1:2365474-2365493 | Msa0187660:intron | 30.0% |
| GCTCTTGTAATTTCTGAATT+TGG | + | chr2_1:2365553-2365572 | Msa0187660:intron | 30.0% | |
| AGGCAACATAAAAAACATGA+TGG | - | chr2_1:2365625-2365644 | None:intergenic | 30.0% | |
| ! | TTTTTATGTTGCCTGAATTG+AGG | + | chr2_1:2365631-2365650 | Msa0187660:intron | 30.0% |
| ! | AGCAAATGTAACTGTTGTTT+AGG | + | chr2_1:2365990-2366009 | Msa0187660:intron | 30.0% |
| CATTACACTTTGAGTATACT+TGG | - | chr2_1:2366114-2366133 | None:intergenic | 30.0% | |
| GAACTGGACATAAATAATCA+GGG | - | chr2_1:2366174-2366193 | None:intergenic | 30.0% | |
| AGAACTGGACATAAATAATC+AGG | - | chr2_1:2366175-2366194 | None:intergenic | 30.0% | |
| TTGCTAAAAGAAACTAGAAC+TGG | - | chr2_1:2366190-2366209 | None:intergenic | 30.0% | |
| !! | TTAGCAAATTTTTGGATTGG+TGG | + | chr2_1:2366203-2366222 | Msa0187660:intron | 30.0% |
| !!! | TAGCAAATTTTTGGATTGGT+GGG | + | chr2_1:2366204-2366223 | Msa0187660:intron | 30.0% |
| ATGATTTCCATTCTTTCAAG+AGG | + | chr2_1:2366239-2366258 | Msa0187660:intron | 30.0% | |
| TGATTTCCATTCTTTCAAGA+GGG | + | chr2_1:2366240-2366259 | Msa0187660:intron | 30.0% | |
| GGTAACTAATTATTACAGGA+AGG | + | chr2_1:2366383-2366402 | Msa0187660:intron | 30.0% | |
| AACTCACTTAACCTTACTAT+CGG | + | chr2_1:2366499-2366518 | Msa0187660:intron | 30.0% | |
| GTTGAGTAATGAAACCAAAA+AGG | + | chr2_1:2366676-2366695 | Msa0187660:intron | 30.0% | |
| !! | TCTTACTTTGCATTTTCAAG+AGG | + | chr2_1:2366775-2366794 | Msa0187660:intron | 30.0% |
| TTGTACAGATCATCCATAAA+AGG | + | chr2_1:2366913-2366932 | Msa0187660:intron | 30.0% | |
| TGAAATTGAAGACCGTTTAA+AGG | + | chr2_1:2367035-2367054 | Msa0187660:intron | 30.0% | |
| GCAACAGAAATAAATCACTA+CGG | - | chr2_1:2367216-2367235 | None:intergenic | 30.0% | |
| AAGTATCTACTCTATGAGTT+AGG | + | chr2_1:2367369-2367388 | Msa0187660:intron | 30.0% | |
| ATTTGAATATAGTCCTGCTT+TGG | + | chr2_1:2367711-2367730 | Msa0187660:intron | 30.0% | |
| CTATTGCACAACTTACAAAA+GGG | + | chr2_1:2367819-2367838 | Msa0187660:CDS | 30.0% | |
| AAGAACAAGGAAGATAAAGA+AGG | + | chr2_1:2367842-2367861 | Msa0187660:CDS | 30.0% | |
| AACAACAAATCGATTATCGC+TGG | - | chr2_1:2364796-2364815 | None:intergenic | 35.0% | |
| ATCTGTGAATTCAGCAAAGA+TGG | + | chr2_1:2364822-2364841 | Msa0187660:exon | 35.0% | |
| ! | AAAGATGGTAACGAAAACAG+AGG | + | chr2_1:2364837-2364856 | Msa0187660:exon | 35.0% |
| CTAGAAATTCAGGTCGATAA+TGG | + | chr2_1:2364877-2364896 | Msa0187660:CDS | 35.0% | |
| ! | GAGTTTGGAATCATTCAAGA+TGG | - | chr2_1:2364986-2365005 | None:intergenic | 35.0% |
| AAGTCAACTACTTCCAATTG+TGG | + | chr2_1:2365075-2365094 | Msa0187660:intron | 35.0% | |
| TCATTAACTTAGGCTCTGTT+TGG | + | chr2_1:2365360-2365379 | Msa0187660:intron | 35.0% | |
| ! | TGGACCACATAAAGGTATAA+AGG | - | chr2_1:2365605-2365624 | None:intergenic | 35.0% |
| !! | AAACATGATGGACCACATAA+AGG | - | chr2_1:2365613-2365632 | None:intergenic | 35.0% |
| ATGTAGCAAATCCTCAATTC+AGG | - | chr2_1:2365645-2365664 | None:intergenic | 35.0% | |
| ! | AGACTTTTAATCAGGCATGA+AGG | - | chr2_1:2365674-2365693 | None:intergenic | 35.0% |
| ! | TTTTTATCAGGACTGCACAA+AGG | + | chr2_1:2365736-2365755 | Msa0187660:intron | 35.0% |
| !! | AACCTTTGGCATCTTTGTTT+TGG | + | chr2_1:2366041-2366060 | Msa0187660:intron | 35.0% |
| !!! | ACCTTTGGCATCTTTGTTTT+GGG | + | chr2_1:2366042-2366061 | Msa0187660:intron | 35.0% |
| GGACATAAATAATCAGGGAA+CGG | - | chr2_1:2366169-2366188 | None:intergenic | 35.0% | |
| ACTAATTATTACAGGAAGGC+TGG | + | chr2_1:2366387-2366406 | Msa0187660:intron | 35.0% | |
| AGTGAGTTTACTTGATCAAG+AGG | - | chr2_1:2366487-2366506 | None:intergenic | 35.0% | |
| ACTCACTTAACCTTACTATC+GGG | + | chr2_1:2366500-2366519 | Msa0187660:intron | 35.0% | |
| AAGATTTACGCTTCATCACA+GGG | - | chr2_1:2366570-2366589 | None:intergenic | 35.0% | |
| TAAGATTTACGCTTCATCAC+AGG | - | chr2_1:2366571-2366590 | None:intergenic | 35.0% | |
| CTTTAACCTTCTAATAGTCC+AGG | + | chr2_1:2366650-2366669 | Msa0187660:intron | 35.0% | |
| !! | TAGTATTAGGTTGCCCTTTT+TGG | - | chr2_1:2366693-2366712 | None:intergenic | 35.0% |
| TAGTGAGGCTCTATAGTATT+AGG | - | chr2_1:2366706-2366725 | None:intergenic | 35.0% | |
| !! | TACTTTGCATTTTCAAGAGG+CGG | + | chr2_1:2366778-2366797 | Msa0187660:intron | 35.0% |
| ATTGTTACTCAAGAAAGCCT+AGG | - | chr2_1:2366865-2366884 | None:intergenic | 35.0% | |
| TACAGATCATCCATAAAAGG+AGG | + | chr2_1:2366916-2366935 | Msa0187660:intron | 35.0% | |
| ACAGATCATCCATAAAAGGA+GGG | + | chr2_1:2366917-2366936 | Msa0187660:intron | 35.0% | |
| !! | ATATTTCTGGGGCTATTGAA+TGG | + | chr2_1:2366964-2366983 | Msa0187660:CDS | 35.0% |
| AACGGTCTTCAATTTCAGAT+GGG | - | chr2_1:2367032-2367051 | None:intergenic | 35.0% | |
| AAACGGTCTTCAATTTCAGA+TGG | - | chr2_1:2367033-2367052 | None:intergenic | 35.0% | |
| ! | TCCTCATTTTCACAGATTCA+TGG | + | chr2_1:2367109-2367128 | Msa0187660:intron | 35.0% |
| AATCACTACGGAAAGAGAAA+CGG | - | chr2_1:2367204-2367223 | None:intergenic | 35.0% | |
| AAGTGATAAAGTGGTACAGT+TGG | - | chr2_1:2367334-2367353 | None:intergenic | 35.0% | |
| GCATATGCTAAGTGATAAAG+TGG | - | chr2_1:2367343-2367362 | None:intergenic | 35.0% | |
| TTATTAGAGTGAAGAAACCC+GGG | - | chr2_1:2367433-2367452 | None:intergenic | 35.0% | |
| GTTATTAGAGTGAAGAAACC+CGG | - | chr2_1:2367434-2367453 | None:intergenic | 35.0% | |
| !! | TTAACTTAAATGGTGTTGCC+AGG | + | chr2_1:2367522-2367541 | Msa0187660:intron | 35.0% |
| CATAGTATTTCTTGGCAGTT+TGG | - | chr2_1:2367579-2367598 | None:intergenic | 35.0% | |
| AGTGGATGCATAGTATTTCT+TGG | - | chr2_1:2367587-2367606 | None:intergenic | 35.0% | |
| !! | TGGTGAGTGTTTATTTTCTG+TGG | + | chr2_1:2367656-2367675 | Msa0187660:intron | 35.0% |
| CAGAATCGTGAACTTGTAAA+TGG | - | chr2_1:2367689-2367708 | None:intergenic | 35.0% | |
| TGATATCTACTAACCAAAGC+AGG | - | chr2_1:2367727-2367746 | None:intergenic | 35.0% | |
| GCTATTGCACAACTTACAAA+AGG | + | chr2_1:2367818-2367837 | Msa0187660:CDS | 35.0% | |
| ACTTACAAAAGGGAAGAACA+AGG | + | chr2_1:2367829-2367848 | Msa0187660:CDS | 35.0% | |
| CGACAATGTTAAACTCTTCA+AGG | - | chr2_1:2367954-2367973 | None:intergenic | 35.0% | |
| ! | AAGACATGTGAAGCTTTTGT+TGG | + | chr2_1:2368156-2368175 | Msa0187660:three_prime_UTR | 35.0% |
| ATACACTGACAACATGCATT+AGG | - | chr2_1:2368213-2368232 | None:intergenic | 35.0% | |
| ! | AAATCGATCTAAAACCCGTG+CGG | + | chr2_1:2364770-2364789 | Msa0187660:five_prime_UTR | 40.0% |
| ! | GAAATTCAGGTCGATAATGG+TGG | + | chr2_1:2364880-2364899 | Msa0187660:CDS | 40.0% |
| TGAGGACTTTATCAGAACGA+CGG | - | chr2_1:2364951-2364970 | None:intergenic | 40.0% | |
| TCTGATAAAGTCCTCAAGCA+TGG | + | chr2_1:2364955-2364974 | Msa0187660:CDS | 40.0% | |
| ! | AGAATGGACTTTGTATGAGC+AGG | + | chr2_1:2365145-2365164 | Msa0187660:intron | 40.0% |
| TCAATGTCTTGATGTTGCTC+AGG | + | chr2_1:2365190-2365209 | Msa0187660:CDS | 40.0% | |
| TAGGGAATCTTATGCATAGC+TGG | + | chr2_1:2365322-2365341 | Msa0187660:intron | 40.0% | |
| TGAGAGATCCATGTGTTAGA+TGG | + | chr2_1:2365503-2365522 | Msa0187660:intron | 40.0% | |
| ATCCATGTGTTAGATGGTAC+TGG | + | chr2_1:2365509-2365528 | Msa0187660:intron | 40.0% | |
| AACCAGTACCATCTAACACA+TGG | - | chr2_1:2365514-2365533 | None:intergenic | 40.0% | |
| ! | TTACCAACTCTTTTGCTCTC+CGG | - | chr2_1:2365779-2365798 | None:intergenic | 40.0% |
| AGCAACTTAAATCCACAGCA+CGG | - | chr2_1:2365830-2365849 | None:intergenic | 40.0% | |
| !! | AGTAGCAACTGTTAGGTTGA+TGG | - | chr2_1:2365866-2365885 | None:intergenic | 40.0% |
| AGACAGCTGTTACATTTGCA+GGG | - | chr2_1:2365966-2365985 | None:intergenic | 40.0% | |
| TAGACAGCTGTTACATTTGC+AGG | - | chr2_1:2365967-2365986 | None:intergenic | 40.0% | |
| TGCAAATGTAACAGCTGTCT+AGG | + | chr2_1:2365966-2365985 | Msa0187660:intron | 40.0% | |
| ACCCAAAACAAAGATGCCAA+AGG | - | chr2_1:2366046-2366065 | None:intergenic | 40.0% | |
| AAGCATCCCTCTTGAAAGAA+TGG | - | chr2_1:2366249-2366268 | None:intergenic | 40.0% | |
| AATTATTACAGGAAGGCTGG+AGG | + | chr2_1:2366390-2366409 | Msa0187660:intron | 40.0% | |
| ! | GCAATGTTGCTTGAAGCAAA+AGG | + | chr2_1:2366412-2366431 | Msa0187660:CDS | 40.0% |
| !! | AAAAGCGTACTCAAGCCTTT+TGG | + | chr2_1:2366453-2366472 | Msa0187660:CDS | 40.0% |
| CTCACTTAACCTTACTATCG+GGG | + | chr2_1:2366501-2366520 | Msa0187660:intron | 40.0% | |
| ACTATAGAGCCTCACTATAG+TGG | + | chr2_1:2366709-2366728 | Msa0187660:intron | 40.0% | |
| CTATAGAGCCTCACTATAGT+GGG | + | chr2_1:2366710-2366729 | Msa0187660:intron | 40.0% | |
| ! | CCTCACTATAGTGGGATTTA+GGG | + | chr2_1:2366718-2366737 | Msa0187660:intron | 40.0% |
| ! | CTCACTATAGTGGGATTTAG+GGG | + | chr2_1:2366719-2366738 | Msa0187660:intron | 40.0% |
| AAGGCACAAGGCAATATTTC+TGG | + | chr2_1:2366951-2366970 | Msa0187660:CDS | 40.0% | |
| AGGCACAAGGCAATATTTCT+GGG | + | chr2_1:2366952-2366971 | Msa0187660:CDS | 40.0% | |
| GCCATGAATCTGTGAAAATG+AGG | - | chr2_1:2367113-2367132 | None:intergenic | 40.0% | |
| GCTGCTTGTTTATACCTAAC+AGG | - | chr2_1:2367280-2367299 | None:intergenic | 40.0% | |
| !! | CATCTCTAGGACGCAATATT+CGG | - | chr2_1:2367466-2367485 | None:intergenic | 40.0% |
| TATTGCGTCCTAGAGATGTA+TGG | + | chr2_1:2367468-2367487 | Msa0187660:intron | 40.0% | |
| ATTGCGTCCTAGAGATGTAT+GGG | + | chr2_1:2367469-2367488 | Msa0187660:intron | 40.0% | |
| AGGTAAACCCATACATCTCT+AGG | - | chr2_1:2367479-2367498 | None:intergenic | 40.0% | |
| !! | GCATCCACTATTGACTTAAC+TGG | + | chr2_1:2367598-2367617 | Msa0187660:CDS | 40.0% |
| !! | TCCACTATTGACTTAACTGG+AGG | + | chr2_1:2367601-2367620 | Msa0187660:CDS | 40.0% |
| AAGAATACCAGAGCTCTCTT+CGG | + | chr2_1:2367625-2367644 | Msa0187660:CDS | 40.0% | |
| TTCAAGGCAGTTGTAAGTTG+AGG | - | chr2_1:2367938-2367957 | None:intergenic | 40.0% | |
| ! | ATTCAGGTCGATAATGGTGG+CGG | + | chr2_1:2364883-2364902 | Msa0187660:CDS | 45.0% |
| TTCCCTCGTCAGAAAACTCA+AGG | + | chr2_1:2364924-2364943 | Msa0187660:CDS | 45.0% | |
| ! | GACCTTGAGTTTTCTGACGA+GGG | - | chr2_1:2364929-2364948 | None:intergenic | 45.0% |
| AGATGGACAATCCATGCTTG+AGG | - | chr2_1:2364969-2364988 | None:intergenic | 45.0% | |
| TCCAAACTCCGATCCAAACT+CGG | + | chr2_1:2364997-2365016 | Msa0187660:CDS | 45.0% | |
| GAGTCAAGTGACAAGAGACA+GGG | - | chr2_1:2365464-2365483 | None:intergenic | 45.0% | |
| AGAGTCAAGTGACAAGAGAC+AGG | - | chr2_1:2365465-2365484 | None:intergenic | 45.0% | |
| ! | TACCAACTCTTTTGCTCTCC+GGG | - | chr2_1:2365778-2365797 | None:intergenic | 45.0% |
| AGCAGACAGTAGCAACTGTT+AGG | - | chr2_1:2365873-2365892 | None:intergenic | 45.0% | |
| ! | GTGTGCAGTTGCTTGTGTTT+TGG | - | chr2_1:2366147-2366166 | None:intergenic | 45.0% |
| TGCTTGAAGCAAAAGGTTCC+TGG | + | chr2_1:2366419-2366438 | Msa0187660:CDS | 45.0% | |
| GCTTGAAGCAAAAGGTTCCT+GGG | + | chr2_1:2366420-2366439 | Msa0187660:CDS | 45.0% | |
| AGCAAAAGGTTCCTGGGAAA+AGG | + | chr2_1:2366426-2366445 | Msa0187660:CDS | 45.0% | |
| CAAGAGGATTGTCCTCCAAA+AGG | - | chr2_1:2366471-2366490 | None:intergenic | 45.0% | |
| ACCTTACTATCGGGGAACAA+AGG | + | chr2_1:2366509-2366528 | Msa0187660:intron | 45.0% | |
| CCTTACTATCGGGGAACAAA+GGG | + | chr2_1:2366510-2366529 | Msa0187660:intron | 45.0% | |
| CTTACTATCGGGGAACAAAG+GGG | + | chr2_1:2366511-2366530 | Msa0187660:intron | 45.0% | |
| TTACTATCGGGGAACAAAGG+GGG | + | chr2_1:2366512-2366531 | Msa0187660:intron | 45.0% | |
| AACCTTCTAATAGTCCAGGC+TGG | + | chr2_1:2366654-2366673 | Msa0187660:intron | 45.0% | |
| AACCAGCCTGGACTATTAGA+AGG | - | chr2_1:2366659-2366678 | None:intergenic | 45.0% | |
| GTTTCATTACTCAACCAGCC+TGG | - | chr2_1:2366671-2366690 | None:intergenic | 45.0% | |
| ! | GCCTCACTATAGTGGGATTT+AGG | + | chr2_1:2366717-2366736 | Msa0187660:intron | 45.0% |
| CCCTAAATCCCACTATAGTG+AGG | - | chr2_1:2366721-2366740 | None:intergenic | 45.0% | |
| ! | ACTATAGTGGGATTTAGGGG+AGG | + | chr2_1:2366722-2366741 | Msa0187660:intron | 45.0% |
| ! | CTATAGTGGGATTTAGGGGA+GGG | + | chr2_1:2366723-2366742 | Msa0187660:intron | 45.0% |
| GATCATCCATAAAAGGAGGG+TGG | + | chr2_1:2366920-2366939 | Msa0187660:intron | 45.0% | |
| ! | GGCACAAGGCAATATTTCTG+GGG | + | chr2_1:2366953-2366972 | Msa0187660:CDS | 45.0% |
| ! | ACAAGCAGCATTTTGCTACG+AGG | + | chr2_1:2367291-2367310 | Msa0187660:CDS | 45.0% |
| TGCCAGGTACTTTATACGCT+TGG | + | chr2_1:2367538-2367557 | Msa0187660:intron | 45.0% | |
| ! | CACCAAGCGTATAAAGTACC+TGG | - | chr2_1:2367543-2367562 | None:intergenic | 45.0% |
| CAGGTACTTTATACGCTTGG+TGG | + | chr2_1:2367541-2367560 | Msa0187660:intron | 45.0% | |
| GCCTCCAGTTAAGTCAATAG+TGG | - | chr2_1:2367605-2367624 | None:intergenic | 45.0% | |
| AGCTCTCTTCGGTATATGCT+TGG | + | chr2_1:2367636-2367655 | Msa0187660:CDS | 45.0% | |
| GTAATCCTTCTCCAACGCTT+TGG | - | chr2_1:2367891-2367910 | None:intergenic | 45.0% | |
| ! | GTAAGTTGAGGAAGCTTGTC+AGG | - | chr2_1:2367926-2367945 | None:intergenic | 45.0% |
| ! | GGAGTGAGTGATAGTGTGTG+CGG | + | chr2_1:2364706-2364725 | Msa0187660:five_prime_UTR | 50.0% |
| ! | GGACCTTGAGTTTTCTGACG+AGG | - | chr2_1:2364930-2364949 | None:intergenic | 50.0% |
| GAGACAGGGAAGAGTCTGTT+TGG | - | chr2_1:2365450-2365469 | None:intergenic | 50.0% | |
| AGGACTGCACAAAGGCTCTT+CGG | + | chr2_1:2365744-2365763 | Msa0187660:intron | 50.0% | |
| TTCCCGGAGAGCAAAAGAGT+TGG | + | chr2_1:2365773-2365792 | Msa0187660:CDS | 50.0% | |
| TCTACGTCTTTACCGTGCTG+TGG | + | chr2_1:2365815-2365834 | Msa0187660:intron | 50.0% | |
| ! | GCAGGGCTCTATCTAAGATC+AGG | - | chr2_1:2365949-2365968 | None:intergenic | 50.0% |
| !!! | CGCTTTTTCTGCCTTTTCCC+AGG | - | chr2_1:2366440-2366459 | None:intergenic | 50.0% |
| ! | AGCGTACTCAAGCCTTTTGG+AGG | + | chr2_1:2366456-2366475 | Msa0187660:CDS | 50.0% |
| CCCTTTGTTCCCCGATAGTA+AGG | - | chr2_1:2366513-2366532 | None:intergenic | 50.0% | |
| TACTATCGGGGAACAAAGGG+GGG | + | chr2_1:2366513-2366532 | Msa0187660:intron | 50.0% | |
| ACCTGTTATCTCCCGTCACA+CGG | + | chr2_1:2366819-2366838 | Msa0187660:intron | 50.0% | |
| TTGGAGTTGCTTCCGTGTGA+CGG | - | chr2_1:2366834-2366853 | None:intergenic | 50.0% | |
| ! | CCATAGCCACCCTCCTTTTA+TGG | - | chr2_1:2366929-2366948 | None:intergenic | 50.0% |
| CCATAAAAGGAGGGTGGCTA+TGG | + | chr2_1:2366926-2366945 | Msa0187660:CDS | 50.0% | |
| TCATGGCAGATCACGATGCA+TGG | + | chr2_1:2367126-2367145 | Msa0187660:CDS | 50.0% | |
| TCAAATTCTTCCCCGTCTCC+CGG | + | chr2_1:2367412-2367431 | Msa0187660:intron | 50.0% | |
| GCATATACCGAAGAGAGCTC+TGG | - | chr2_1:2367635-2367654 | None:intergenic | 50.0% | |
| ! | GTGCAATAGCAGAAGTGCAC+TGG | - | chr2_1:2367808-2367827 | None:intergenic | 50.0% |
| ATCTCTAGCAGCCAAAGCGT+TGG | + | chr2_1:2367877-2367896 | Msa0187660:CDS | 50.0% | |
| ! | AGTGATAGTGTGTGCGGTGC+TGG | + | chr2_1:2364712-2364731 | Msa0187660:five_prime_UTR | 55.0% |
| ATCGATTATCGCTGGCCGCA+CGG | - | chr2_1:2364788-2364807 | None:intergenic | 55.0% | |
| !! | ATAATGGTGGCGGAGGAGCT+TGG | + | chr2_1:2364893-2364912 | Msa0187660:CDS | 55.0% |
| !! | TAATGGTGGCGGAGGAGCTT+GGG | + | chr2_1:2364894-2364913 | Msa0187660:CDS | 55.0% |
| GCCGAGTTTGGATCGGAGTT+TGG | - | chr2_1:2365001-2365020 | None:intergenic | 55.0% | |
| GCAGGTTGCAGTTGCTGCTA+TGG | + | chr2_1:2365163-2365182 | Msa0187660:CDS | 55.0% | |
| GCACAAAGGCTCTTCGGAAG+AGG | + | chr2_1:2365750-2365769 | Msa0187660:CDS | 55.0% | |
| ACTATCGGGGAACAAAGGGG+GGG | + | chr2_1:2366514-2366533 | Msa0187660:intron | 55.0% | |
| ! | TCCGTGTGACGGGAGATAAC+AGG | - | chr2_1:2366823-2366842 | None:intergenic | 55.0% |
| TGGAGTTGCTTCCGTGTGAC+GGG | - | chr2_1:2366833-2366852 | None:intergenic | 55.0% | |
| CAACTCCAACTGTTGCGCCT+AGG | + | chr2_1:2366845-2366864 | Msa0187660:intron | 55.0% | |
| GAAAGCCTAGGCGCAACAGT+TGG | - | chr2_1:2366853-2366872 | None:intergenic | 55.0% | |
| AAGGAGGGTGGCTATGGCAA+AGG | + | chr2_1:2366932-2366951 | Msa0187660:CDS | 55.0% | |
| ! | GTGGCTATGGCAAAGGCACA+AGG | + | chr2_1:2366939-2366958 | Msa0187660:CDS | 55.0% |
| CAAATTCTTCCCCGTCTCCC+GGG | + | chr2_1:2367413-2367432 | Msa0187660:intron | 55.0% | |
| AGTGAAGAAACCCGGGAGAC+GGG | - | chr2_1:2367426-2367445 | None:intergenic | 55.0% | |
| GAGTGAAGAAACCCGGGAGA+CGG | - | chr2_1:2367427-2367446 | None:intergenic | 55.0% | |
| !! | AGCAGCCAAAGCGTTGGAGA+AGG | + | chr2_1:2367883-2367902 | Msa0187660:CDS | 55.0% |
| TCGATTATCGCTGGCCGCAC+GGG | - | chr2_1:2364787-2364806 | None:intergenic | 60.0% | |
| !! | CAGGTCGATAATGGTGGCGG+AGG | + | chr2_1:2364886-2364905 | Msa0187660:CDS | 60.0% |
| ! | CATCGGCGCCGAGTTTGGAT+CGG | - | chr2_1:2365008-2365027 | None:intergenic | 60.0% |
| ! | GATACCATCGGCGCCGAGTT+TGG | - | chr2_1:2365013-2365032 | None:intergenic | 60.0% |
| GGCTCTTCGGAAGAGGTTCC+CGG | + | chr2_1:2365757-2365776 | Msa0187660:CDS | 60.0% | |
| CTATCGGGGAACAAAGGGGG+GGG | + | chr2_1:2366515-2366534 | Msa0187660:intron | 60.0% | |
| TATCGGGGAACAAAGGGGGG+GGG | + | chr2_1:2366516-2366535 | Msa0187660:intron | 60.0% | |
| GTGAAGAAACCCGGGAGACG+GGG | - | chr2_1:2367425-2367444 | None:intergenic | 60.0% | |
| ! | CGATCCAAACTCGGCGCCGA+TGG | + | chr2_1:2365006-2365025 | Msa0187660:CDS | 65.0% |
| ATCGGGGAACAAAGGGGGGG+GGG | + | chr2_1:2366517-2366536 | Msa0187660:intron | 65.0% | |
| TCGGGGAACAAAGGGGGGGG+GGG | + | chr2_1:2366518-2366537 | Msa0187660:intron | 70.0% | |
| CGGGGAACAAAGGGGGGGGG+GGG | + | chr2_1:2366519-2366538 | Msa0187660:intron | 75.0% | |
| GGGGAACAAAGGGGGGGGGG+GGG | + | chr2_1:2366520-2366539 | Msa0187660:intron | 75.0% | |
| GGGAACAAAGGGGGGGGGGG+GGG | + | chr2_1:2366521-2366540 | Msa0187660:intron | 75.0% | |
| GGAACAAAGGGGGGGGGGGG+GGG | + | chr2_1:2366522-2366541 | Msa0187660:intron | 75.0% | |
| GAACAAAGGGGGGGGGGGGG+GGG | + | chr2_1:2366523-2366542 | Msa0187660:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 2364677 | 2368258 | 2364677 | ID=Msa0187660;Name=Msa0187660 |
| chr2_1 | mRNA | 2364677 | 2368258 | 2364677 | ID=Msa0187660-mRNA-1;Parent=Msa0187660;Name=Msa0187660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=164|1|1|1|1|1|9|279|302 |
| chr2_1 | exon | 2364677 | 2365027 | 2364677 | ID=Msa0187660-mRNA-1:exon:1058;Parent=Msa0187660-mRNA-1 |
| chr2_1 | exon | 2365147 | 2365211 | 2365147 | ID=Msa0187660-mRNA-1:exon:1059;Parent=Msa0187660-mRNA-1 |
| chr2_1 | exon | 2365746 | 2365794 | 2365746 | ID=Msa0187660-mRNA-1:exon:1060;Parent=Msa0187660-mRNA-1 |
| chr2_1 | exon | 2366401 | 2366495 | 2366401 | ID=Msa0187660-mRNA-1:exon:1061;Parent=Msa0187660-mRNA-1 |
| chr2_1 | exon | 2366921 | 2367006 | 2366921 | ID=Msa0187660-mRNA-1:exon:1062;Parent=Msa0187660-mRNA-1 |
| chr2_1 | exon | 2367124 | 2367183 | 2367124 | ID=Msa0187660-mRNA-1:exon:1063;Parent=Msa0187660-mRNA-1 |
| chr2_1 | exon | 2367285 | 2367366 | 2367285 | ID=Msa0187660-mRNA-1:exon:1064;Parent=Msa0187660-mRNA-1 |
| chr2_1 | exon | 2367544 | 2367657 | 2367544 | ID=Msa0187660-mRNA-1:exon:1065;Parent=Msa0187660-mRNA-1 |
| chr2_1 | exon | 2367809 | 2368258 | 2367809 | ID=Msa0187660-mRNA-1:exon:1066;Parent=Msa0187660-mRNA-1 |
| chr2_1 | five_prime_UTR | 2364677 | 2364840 | 2364677 | ID=Msa0187660-mRNA-1:five_prime_utr;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2364841 | 2365027 | 2364841 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2365147 | 2365211 | 2365147 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2365746 | 2365794 | 2365746 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2366401 | 2366495 | 2366401 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2366921 | 2367006 | 2366921 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2367124 | 2367183 | 2367124 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2367285 | 2367366 | 2367285 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2367544 | 2367657 | 2367544 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | CDS | 2367809 | 2367979 | 2367809 | ID=Msa0187660-mRNA-1:cds;Parent=Msa0187660-mRNA-1 |
| chr2_1 | three_prime_UTR | 2367980 | 2368258 | 2367980 | ID=Msa0187660-mRNA-1:three_prime_utr;Parent=Msa0187660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
