AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134430 MtrunA17_Chr7g0214771 89.535 172 18 0 2 173 7 178 2.44e-114 322
Msa1134430 MtrunA17_Chr7g0214761 89.595 173 18 0 1 173 6 178 2.63e-113 319
Msa1134430 MtrunA17_Chr6g0461711 68.235 170 53 1 2 171 7 175 4.49e-83 243
Msa1134430 MtrunA17_Chr7g0252784 67.857 168 53 1 2 169 7 173 5.88e-81 237
Msa1134430 MtrunA17_Chr7g0252800 63.095 168 61 1 2 169 8 174 2.58e-74 220
Msa1134430 MtrunA17_Chr7g0252811 61.963 163 60 2 8 170 35 195 2.52e-70 211
Msa1134430 MtrunA17_Chr6g0472451 57.396 169 71 1 1 169 5 172 4.79e-68 204
Msa1134430 MtrunA17_Chr7g0266201 56.287 167 71 2 4 169 9 174 7.48e-64 194
Msa1134430 MtrunA17_Chr1g0178751 53.125 160 72 2 2 159 7 165 7.00e-60 184
Msa1134430 MtrunA17_Chr2g0321301 48.521 169 85 2 2 169 6 173 5.26e-58 179
Msa1134430 MtrunA17_Chr8g0392741 49.412 170 83 3 1 169 6 173 5.89e-48 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134430 AT1G65480.1 65.294 170 58 1 2 171 7 175 6.82e-82 240
Msa1134430 AT1G65480.2 65.294 170 58 1 2 171 51 219 7.11e-82 241
Msa1134430 AT4G20370.1 63.314 169 61 1 2 170 7 174 1.12e-77 229
Msa1134430 AT5G62040.1 53.988 163 74 1 4 165 8 170 9.40e-62 189
Msa1134430 AT5G03840.1 53.892 167 75 2 4 169 12 177 1.61e-60 186
Msa1134430 AT2G27550.1 49.704 169 84 1 2 169 7 175 1.13e-58 181
Msa1134430 AT1G18100.1 50.877 171 80 3 1 169 5 173 3.74e-52 164

Find 57 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTGATAATTTGCTTAT+TGG 0.155458 7_4:+906839 None:intergenic
CTCTTGGTGGGTTGACTATT+TGG 0.178267 7_4:+906663 None:intergenic
AAAGACACTGAATTTGTAAA+AGG 0.222033 7_4:+906743 None:intergenic
CTTGTTGTTGGTGGTGTAAT+TGG 0.225955 7_4:-906779 Msa1134430:CDS
TTTGCAGAAGTTTACAATCT+TGG 0.279344 7_4:-903837 Msa1134430:CDS
TGAATCCCTCTTGTTGGTCT+TGG 0.316500 7_4:+903945 None:intergenic
TCTTGGTGGGTTGACTATTT+GGG 0.325025 7_4:+906664 None:intergenic
CCCTGTAGTCGCTGGAATAT+TGG 0.340527 7_4:+904316 None:intergenic
TCAGTAGGGCTTGGTGCATC+AGG 0.356176 7_4:+905880 None:intergenic
TATACCAACCAGAGTGTATA+GGG 0.359140 7_4:+906613 None:intergenic
TACAGGTATTCCCTCATATT+AGG 0.366238 7_4:+905856 None:intergenic
GTATACCAACCAGAGTGTAT+AGG 0.396509 7_4:+906612 None:intergenic
TTGTGGTTATAATTATTAGA+TGG 0.404057 7_4:+903749 None:intergenic
TTTCCACCAACTTGAACTCT+TGG 0.407751 7_4:+906647 None:intergenic
TTACAAATTCAGTGTCTTTG+AGG 0.408232 7_4:-906739 Msa1134430:CDS
TGTTGTTTAAGCAACCTTGT+AGG 0.415361 7_4:-903908 Msa1134430:CDS
CCACCAACTTGAACTCTTGG+TGG 0.429744 7_4:+906650 None:intergenic
CACCAACTTGAACTCTTGGT+GGG 0.432832 7_4:+906651 None:intergenic
TACAAATTCAGTGTCTTTGA+GGG 0.441798 7_4:-906738 Msa1134430:CDS
GCCCTACTGATCCTAATATG+AGG 0.445100 7_4:-905867 Msa1134430:CDS
CCAGAGTGTATAGGGTTCTC+AGG 0.448127 7_4:+906621 None:intergenic
TGTCAACGAGAAAGTGGTTC+CGG 0.448740 7_4:-903786 Msa1134430:CDS
ACCAATATTCCAGCGACTAC+AGG 0.450659 7_4:-904317 Msa1134430:CDS
ATATGAGGGAATACCTGTAT+TGG 0.453295 7_4:-905852 Msa1134430:intron
ACACGATGAATCCCTCTTGT+TGG 0.458184 7_4:+903939 None:intergenic
TTCAATTGTCAACGAGAAAG+TGG 0.476637 7_4:-903792 Msa1134430:CDS
TTGAAATAGAGAGCAGCAAC+AGG 0.483630 7_4:+903810 None:intergenic
ATGAATTCCCTTGTTGTTGG+TGG 0.489339 7_4:-906788 Msa1134430:CDS
CTCAAGGTTTGTGGTTGTTG+TGG 0.492802 7_4:+903732 None:intergenic
TATCTACTACTCAAGGTTTG+TGG 0.499893 7_4:+903723 None:intergenic
AAATTCAAACTTACCAATAC+AGG 0.502537 7_4:+905839 None:intergenic
GCGACTACAGGGACAACATT+CGG 0.503478 7_4:-904305 Msa1134430:intron
AATGTTGTCCCTGTAGTCGC+TGG 0.506880 7_4:+904308 None:intergenic
ATATTAGGATCAGTAGGGCT+TGG 0.509781 7_4:+905871 None:intergenic
AAGACACTGAATTTGTAAAA+GGG 0.518116 7_4:+906744 None:intergenic
GCTAATATAGTGTGCCTACA+AGG 0.535198 7_4:+903894 None:intergenic
CCACCAAGAGTTCAAGTTGG+TGG 0.537101 7_4:-906650 Msa1134430:CDS
GATGGTTAGCCTCCTTCCAC+CGG 0.542124 7_4:+903767 None:intergenic
GAGAAAGTGGTTCCGGTGGA+AGG 0.542228 7_4:-903779 Msa1134430:CDS
CAGTAGGGCTTGGTGCATCA+GGG 0.543914 7_4:+905881 None:intergenic
TCAATGAATTCCCTTGTTGT+TGG 0.548648 7_4:-906791 Msa1134430:CDS
CCCTCATATTAGGATCAGTA+GGG 0.548872 7_4:+905866 None:intergenic
TTATAGATATCTACTACTCA+AGG 0.561415 7_4:+903716 None:intergenic
CCCTACTGATCCTAATATGA+GGG 0.564661 7_4:-905866 Msa1134430:CDS
GAAAATCCAAGACCAACAAG+AGG 0.566107 7_4:-903951 Msa1134430:CDS
CAATTACACCACCAACAACA+AGG 0.568356 7_4:+906780 None:intergenic
TCCCTCATATTAGGATCAGT+AGG 0.580960 7_4:+905865 None:intergenic
GGTGGGTTGACTATTTGGGA+CGG 0.584168 7_4:+906668 None:intergenic
CCAATATTCCAGCGACTACA+GGG 0.601358 7_4:-904316 Msa1134430:CDS
AAAATCCAAGACCAACAAGA+GGG 0.616950 7_4:-903950 Msa1134430:CDS
CAACGAGAAAGTGGTTCCGG+TGG 0.628002 7_4:-903783 Msa1134430:CDS
AAAGTGGTTCCGGTGGAAGG+AGG 0.632372 7_4:-903776 Msa1134430:CDS
CCTGAGAACCCTATACACTC+TGG 0.640356 7_4:-906621 Msa1134430:intron
AATAACAAAGAAGTCATCAA+CGG 0.645377 7_4:-906704 Msa1134430:CDS
AATTACACCACCAACAACAA+GGG 0.656428 7_4:+906781 None:intergenic
AACCCACCAAGAGTTCAAGT+TGG 0.662077 7_4:-906653 Msa1134430:CDS
AACAAAGAAGTCATCAACGG+TGG 0.689200 7_4:-906701 Msa1134430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATATTTTTATTTTGTTT+CGG - chr7_4:904639-904658 Msa1134430:intron 10.0%
!! TTATTTATTAAAGATCTATT+TGG + chr7_4:904988-905007 None:intergenic 10.0%
!! ATTCCAAAAATATTATAAAT+TGG + chr7_4:905154-905173 None:intergenic 10.0%
!!! TAATATTTTTGGAATTTATA+AGG - chr7_4:905159-905178 Msa1134430:intron 10.0%
!! TTGTATAAATATTCAAAAAA+TGG + chr7_4:905194-905213 None:intergenic 10.0%
!!! AATTTTTTAATAATTTAGCA+TGG - chr7_4:905350-905369 Msa1134430:intron 10.0%
!!! ATACATTTTTATATATAACA+AGG - chr7_4:906226-906245 Msa1134430:intron 10.0%
!!! TACATTTTTATATATAACAA+GGG - chr7_4:906227-906246 Msa1134430:intron 10.0%
!!! ATCATTGTTATTTTTTTTAA+AGG + chr7_4:906742-906761 None:intergenic 10.0%
!!! ACATAACTTTTTTTTTTGAA+AGG + chr7_4:904065-904084 None:intergenic 15.0%
!! GATTATGTGTTAATTAATTT+GGG + chr7_4:904375-904394 None:intergenic 15.0%
!! TGATTATGTGTTAATTAATT+TGG + chr7_4:904376-904395 None:intergenic 15.0%
!! ACAAAATAAAAATATGATTG+TGG + chr7_4:904637-904656 None:intergenic 15.0%
!! TGATAAATATTATTATGTCT+TGG - chr7_4:904671-904690 Msa1134430:intron 15.0%
!! TATTATTCATAAAGTTGTTA+AGG - chr7_4:904844-904863 Msa1134430:intron 15.0%
!!! CAACCAATTTATAATATTTT+TGG - chr7_4:905148-905167 Msa1134430:intron 15.0%
!!! TATATTTTTCATGAATTCAA+AGG + chr7_4:905497-905516 None:intergenic 15.0%
!!! AAAAAAAAAGTGTTGTATTT+AGG - chr7_4:905807-905826 Msa1134430:intron 15.0%
!! TTTCTATATAAAAATCTCCT+TGG + chr7_4:903908-903927 None:intergenic 20.0%
!! TATAGAAATTAGAGTTGAAA+CGG - chr7_4:903920-903939 Msa1134430:CDS 20.0%
!!! AGTTTTTCACCTTTTTTTTA+AGG + chr7_4:904271-904290 None:intergenic 20.0%
!! TTGTATTGAAGTAATGTTAT+TGG + chr7_4:904408-904427 None:intergenic 20.0%
!! AATACAAACTAAACCTAATT+GGG - chr7_4:904421-904440 Msa1134430:intron 20.0%
!!! CTTTCACTAATTAAAGATTT+TGG + chr7_4:904463-904482 None:intergenic 20.0%
!! ATATTCAAAAAATGGTAAGT+TGG + chr7_4:905186-905205 None:intergenic 20.0%
!! AGTGTAAGAACAAATAATTT+GGG + chr7_4:905241-905260 None:intergenic 20.0%
!! TAGTGTAAGAACAAATAATT+TGG + chr7_4:905242-905261 None:intergenic 20.0%
!! GAAAAATATAACTTCAATTG+TGG - chr7_4:905507-905526 Msa1134430:intron 20.0%
!! TCAAAATAAAGATAAACAGT+GGG + chr7_4:905647-905666 None:intergenic 20.0%
!! ATCAAAATAAAGATAAACAG+TGG + chr7_4:905648-905667 None:intergenic 20.0%
!!! GTTTATCTTTATTTTGATGA+TGG - chr7_4:905650-905669 Msa1134430:intron 20.0%
!! TATTTAGGTCAGAAAATAAT+TGG - chr7_4:905822-905841 Msa1134430:intron 20.0%
!! TTGTGGTTATAATTATTAGA+TGG + chr7_4:906667-906686 None:intergenic 20.0%
!!! TGCTTTGATAATTTGCTTAT+TGG + chr7_4:903577-903596 None:intergenic 25.0%
! AAGACACTGAATTTGTAAAA+GGG + chr7_4:903672-903691 None:intergenic 25.0%
! AAAGACACTGAATTTGTAAA+AGG + chr7_4:903673-903692 None:intergenic 25.0%
! AATAACAAAGAAGTCATCAA+CGG - chr7_4:903709-903728 Msa1134430:three_prime_UTR 25.0%
!!! TTATTTCTTTTGAACAACCA+AGG - chr7_4:903888-903907 Msa1134430:CDS 25.0%
! GGTTATATACAAAGTATAAG+AGG - chr7_4:903948-903967 Msa1134430:CDS 25.0%
! TTAAGTGACATTAATCCATA+AGG - chr7_4:904032-904051 Msa1134430:intron 25.0%
! AGTTCAAATTGCCAAATTAA+TGG - chr7_4:904168-904187 Msa1134430:intron 25.0%
! AAACTCCTTCCTTAAAAAAA+AGG - chr7_4:904259-904278 Msa1134430:intron 25.0%
!!! TTTCACCTTTTTTTTAAGGA+AGG + chr7_4:904267-904286 None:intergenic 25.0%
! CAATACAAACTAAACCTAAT+TGG - chr7_4:904420-904439 Msa1134430:intron 25.0%
!!! ATTAGTGAAAGCTTTTTTCT+AGG - chr7_4:904472-904491 Msa1134430:intron 25.0%
!!! TTAGTGAAAGCTTTTTTCTA+GGG - chr7_4:904473-904492 Msa1134430:intron 25.0%
! AAATTCAAACTTACCAATAC+AGG + chr7_4:904577-904596 None:intergenic 25.0%
!!! ATATTTTAAGAGTGCGTTTT+AGG - chr7_4:904768-904787 Msa1134430:intron 25.0%
!!! TATTTTAAGAGTGCGTTTTA+GGG - chr7_4:904769-904788 Msa1134430:intron 25.0%
! AAAAATAAGCCAAACAAAAG+AGG + chr7_4:904795-904814 None:intergenic 25.0%
!! TTTTTGATAAGTCAATTCAC+TGG + chr7_4:905294-905313 None:intergenic 25.0%
! AATACACAACTTATGATTTG+CGG - chr7_4:905315-905334 Msa1134430:intron 25.0%
! ATAGTTCATTCTTTGCAATT+TGG - chr7_4:905597-905616 Msa1134430:intron 25.0%
! ATGCATTTGAACAATGTTTA+TGG - chr7_4:905700-905719 Msa1134430:intron 25.0%
!! TTTTTATATATAACAAGGGC+CGG - chr7_4:906231-906250 Msa1134430:intron 25.0%
!!! CACGTTGTTTTATTAATTGT+AGG - chr7_4:906420-906439 Msa1134430:intron 25.0%
! TTATAGATATCTACTACTCA+AGG + chr7_4:906700-906719 None:intergenic 25.0%
TTACAAATTCAGTGTCTTTG+AGG - chr7_4:903674-903693 Msa1134430:three_prime_UTR 30.0%
TACAAATTCAGTGTCTTTGA+GGG - chr7_4:903675-903694 Msa1134430:three_prime_UTR 30.0%
AATTAGAGTTGAAACGGTTT+AGG - chr7_4:903926-903945 Msa1134430:CDS 30.0%
ATTAGAGTTGAAACGGTTTA+GGG - chr7_4:903927-903946 Msa1134430:CDS 30.0%
TATACAAAGTATAAGAGGCA+TGG - chr7_4:903953-903972 Msa1134430:CDS 30.0%
AAGTAACTCTCTTCTATGTT+TGG + chr7_4:904011-904030 None:intergenic 30.0%
!! CTTAGAAACGGTTTTTGATT+AGG + chr7_4:904098-904117 None:intergenic 30.0%
CTAGAAATGGCAATAAGTTT+CGG + chr7_4:904147-904166 None:intergenic 30.0%
GCAATTTGAACTACTAGAAA+TGG + chr7_4:904160-904179 None:intergenic 30.0%
GACAATATTTCTTGTAGTGA+AGG + chr7_4:904197-904216 None:intergenic 30.0%
!! CTTGGTATTGTTTTGTTCAA+TGG - chr7_4:904689-904708 Msa1134430:intron 30.0%
CTATAGGACTTAAATTTGGT+TGG + chr7_4:905267-905286 None:intergenic 30.0%
! ATACACAACTTATGATTTGC+GGG - chr7_4:905316-905335 Msa1134430:intron 30.0%
TAATTTAGCATGGATGAAGT+TGG - chr7_4:905360-905379 Msa1134430:intron 30.0%
! TATCAACTCACTCATGTTTT+TGG + chr7_4:905456-905475 None:intergenic 30.0%
ACCATTTCCCTCTTTATTAT+TGG - chr7_4:906054-906073 Msa1134430:intron 30.0%
TCCAATAATAAAGAGGGAAA+TGG + chr7_4:906058-906077 None:intergenic 30.0%
TAGCGATCCAATAATAAAGA+GGG + chr7_4:906064-906083 None:intergenic 30.0%
ATAGCGATCCAATAATAAAG+AGG + chr7_4:906065-906084 None:intergenic 30.0%
TTATTATTGGATCGCTATAC+AGG - chr7_4:906067-906086 Msa1134430:intron 30.0%
!!! CACATTTTAAGGTGAATAAG+TGG + chr7_4:906275-906294 None:intergenic 30.0%
! TGGCTAGAATTCACATTTTA+AGG + chr7_4:906286-906305 None:intergenic 30.0%
!!! TTTTTTGTCAAGTAGTCTAG+TGG + chr7_4:906306-906325 None:intergenic 30.0%
! ATAAAATTTTGTCTCGATCG+AGG + chr7_4:906546-906565 None:intergenic 30.0%
TTTGCAGAAGTTTACAATCT+TGG - chr7_4:906576-906595 Msa1134430:intron 30.0%
! TCAATGAATTCCCTTGTTGT+TGG - chr7_4:903622-903641 Msa1134430:three_prime_UTR 35.0%
AATTACACCACCAACAACAA+GGG + chr7_4:903635-903654 None:intergenic 35.0%
TATACCAACCAGAGTGTATA+GGG + chr7_4:903803-903822 None:intergenic 35.0%
TAACTCTCTTCTATGTTTGG+AGG + chr7_4:904008-904027 None:intergenic 35.0%
TTCAACTGCAGTCTTAGAAA+CGG + chr7_4:904110-904129 None:intergenic 35.0%
AGTGAAGGTTGCCATTAATT+TGG + chr7_4:904182-904201 None:intergenic 35.0%
!! TTGCTGTTACATGCAACTTT+TGG + chr7_4:904231-904250 None:intergenic 35.0%
!! GATTTTGGATCCTTCTAAGA+TGG + chr7_4:904448-904467 None:intergenic 35.0%
!!! TTCTAGGGTTTTTGACTTTG+TGG - chr7_4:904488-904507 Msa1134430:intron 35.0%
TACAGGTATTCCCTCATATT+AGG + chr7_4:904560-904579 None:intergenic 35.0%
ATATGAGGGAATACCTGTAT+TGG - chr7_4:904561-904580 Msa1134430:intron 35.0%
TTGATAAGTCAATTCACTGG+CGG + chr7_4:905291-905310 None:intergenic 35.0%
GGATAAACAATAGAACCAAG+TGG - chr7_4:905528-905547 Msa1134430:intron 35.0%
CTTTATTCTATTCGCTCACA+AGG + chr7_4:905747-905766 None:intergenic 35.0%
GTGATGTGATAGACAAAACA+AGG - chr7_4:905912-905931 Msa1134430:intron 35.0%
GAGGGAAATGGTAATTAGAA+TGG + chr7_4:906046-906065 None:intergenic 35.0%
AAAATCCAAGACCAACAAGA+GGG - chr7_4:906463-906482 Msa1134430:intron 35.0%
! TGTTGTTTAAGCAACCTTGT+AGG - chr7_4:906505-906524 Msa1134430:intron 35.0%
TTCAATTGTCAACGAGAAAG+TGG - chr7_4:906621-906640 Msa1134430:intron 35.0%
TATCTACTACTCAAGGTTTG+TGG + chr7_4:906693-906712 None:intergenic 35.0%
!! ATGAATTCCCTTGTTGTTGG+TGG - chr7_4:903625-903644 Msa1134430:three_prime_UTR 40.0%
CAATTACACCACCAACAACA+AGG + chr7_4:903636-903655 None:intergenic 40.0%
!! CTTGTTGTTGGTGGTGTAAT+TGG - chr7_4:903634-903653 Msa1134430:three_prime_UTR 40.0%
AACAAAGAAGTCATCAACGG+TGG - chr7_4:903712-903731 Msa1134430:three_prime_UTR 40.0%
!! TCTTGGTGGGTTGACTATTT+GGG + chr7_4:903752-903771 None:intergenic 40.0%
TTTCCACCAACTTGAACTCT+TGG + chr7_4:903769-903788 None:intergenic 40.0%
GTATACCAACCAGAGTGTAT+AGG + chr7_4:903804-903823 None:intergenic 40.0%
!!! CTCATTTTTCAAGTGCCACA+AGG - chr7_4:904289-904308 Msa1134430:intron 40.0%
!!! ATTTTTCAAGTGCCACAAGG+TGG - chr7_4:904292-904311 Msa1134430:intron 40.0%
GTGGGTAAAGGTTACATACA+AGG + chr7_4:904327-904346 None:intergenic 40.0%
! GGGATTTTTCGTTATCCATG+TGG + chr7_4:904355-904374 None:intergenic 40.0%
!! CTTCTAAGATGGTCCCAATT+AGG + chr7_4:904437-904456 None:intergenic 40.0%
CTAATTGGGACCATCTTAGA+AGG - chr7_4:904435-904454 Msa1134430:intron 40.0%
ATATTAGGATCAGTAGGGCT+TGG + chr7_4:904545-904564 None:intergenic 40.0%
CCCTCATATTAGGATCAGTA+GGG + chr7_4:904550-904569 None:intergenic 40.0%
CCCTACTGATCCTAATATGA+GGG - chr7_4:904547-904566 Msa1134430:intron 40.0%
TCCCTCATATTAGGATCAGT+AGG + chr7_4:904551-904570 None:intergenic 40.0%
!!! GTTTTAGGGCCTCTTTTGTT+TGG - chr7_4:904783-904802 Msa1134430:intron 40.0%
CGGGCTATAGGACTTAAATT+TGG + chr7_4:905271-905290 None:intergenic 40.0%
TGATAAGTCAATTCACTGGC+GGG + chr7_4:905290-905309 None:intergenic 40.0%
! TTTTGGTCACATCTTGTGCA+TGG + chr7_4:905439-905458 None:intergenic 40.0%
! ATTCGCTCACAAGGTATCTA+CGG + chr7_4:905738-905757 None:intergenic 40.0%
TATTGGATCGCTATACAGGA+TGG - chr7_4:906071-906090 Msa1134430:intron 40.0%
GTCTCTGAGTATAGATCAGT+TGG - chr7_4:906195-906214 Msa1134430:intron 40.0%
AAGGTGAATAAGTGGAGTGT+CGG + chr7_4:906267-906286 None:intergenic 40.0%
GAAAATCCAAGACCAACAAG+AGG - chr7_4:906462-906481 Msa1134430:intron 40.0%
GCTAATATAGTGTGCCTACA+AGG + chr7_4:906522-906541 None:intergenic 40.0%
TTGAAATAGAGAGCAGCAAC+AGG + chr7_4:906606-906625 None:intergenic 40.0%
!! CTCTTGGTGGGTTGACTATT+TGG + chr7_4:903753-903772 None:intergenic 45.0%
AACCCACCAAGAGTTCAAGT+TGG - chr7_4:903760-903779 Msa1134430:exon 45.0%
CACCAACTTGAACTCTTGGT+GGG + chr7_4:903765-903784 None:intergenic 45.0%
AGAACCCTATACACTCTGGT+TGG - chr7_4:903796-903815 Msa1134430:CDS 45.0%
! TTGAAAGGCGCATGACCTTA+TGG + chr7_4:904050-904069 None:intergenic 45.0%
GTTATCCATGTGGCAGTTGT+GGG + chr7_4:904345-904364 None:intergenic 45.0%
TTGACTTTGTGGCACTTTGC+AGG - chr7_4:904499-904518 Msa1134430:intron 45.0%
GCCCTACTGATCCTAATATG+AGG - chr7_4:904546-904565 Msa1134430:intron 45.0%
CACAGACACAAGAAACCACT+TGG + chr7_4:905546-905565 None:intergenic 45.0%
! TTCGCTCACAAGGTATCTAC+GGG + chr7_4:905737-905756 None:intergenic 45.0%
ACCAATATTCCAGCGACTAC+AGG - chr7_4:906096-906115 Msa1134430:intron 45.0%
CCAATATTCCAGCGACTACA+GGG - chr7_4:906097-906116 Msa1134430:intron 45.0%
! AGGTGAATAAGTGGAGTGTC+GGG + chr7_4:906266-906285 None:intergenic 45.0%
! TGAATCCCTCTTGTTGGTCT+TGG + chr7_4:906471-906490 None:intergenic 45.0%
ACACGATGAATCCCTCTTGT+TGG + chr7_4:906477-906496 None:intergenic 45.0%
TGTCAACGAGAAAGTGGTTC+CGG - chr7_4:906627-906646 Msa1134430:CDS 45.0%
CTCAAGGTTTGTGGTTGTTG+TGG + chr7_4:906684-906703 None:intergenic 45.0%
!! TTTCTATATAATTAAAAAAA+TGG - chr7_4:905065-905084 Msa1134430:intron 5.0%
!! GGTGGGTTGACTATTTGGGA+CGG + chr7_4:903748-903767 None:intergenic 50.0%
CCACCAACTTGAACTCTTGG+TGG + chr7_4:903766-903785 None:intergenic 50.0%
!! CCACCAAGAGTTCAAGTTGG+TGG - chr7_4:903763-903782 Msa1134430:exon 50.0%
CCAGAGTGTATAGGGTTCTC+AGG + chr7_4:903795-903814 None:intergenic 50.0%
CCTGAGAACCCTATACACTC+TGG - chr7_4:903792-903811 Msa1134430:CDS 50.0%
TTCAAGTGCCACAAGGTGGT+TGG - chr7_4:904296-904315 Msa1134430:intron 50.0%
! AGGCTTTTCCAACCACCTTG+TGG + chr7_4:904307-904326 None:intergenic 50.0%
CATGTGGCAGTTGTGGGTAA+AGG + chr7_4:904339-904358 None:intergenic 50.0%
CTTTACCCACAACTGCCACA+TGG - chr7_4:904337-904356 Msa1134430:intron 50.0%
CGTTATCCATGTGGCAGTTG+TGG + chr7_4:904346-904365 None:intergenic 50.0%
TTGTGGCACTTTGCAGGTGA+TGG - chr7_4:904505-904524 Msa1134430:intron 50.0%
!! TCAATTCACTGGCGGGCTAT+AGG + chr7_4:905283-905302 None:intergenic 50.0%
! CAAGGTATCTACGGGATGGA+TGG + chr7_4:905729-905748 None:intergenic 50.0%
! CTCACAAGGTATCTACGGGA+TGG + chr7_4:905733-905752 None:intergenic 50.0%
CCCTGTAGTCGCTGGAATAT+TGG + chr7_4:906100-906119 None:intergenic 50.0%
AATGTTGTCCCTGTAGTCGC+TGG + chr7_4:906108-906127 None:intergenic 50.0%
GCGACTACAGGGACAACATT+CGG - chr7_4:906108-906127 Msa1134430:intron 50.0%
!! GGTGAATAAGTGGAGTGTCG+GGG + chr7_4:906265-906284 None:intergenic 50.0%
!! CAGTAGGGCTTGGTGCATCA+GGG + chr7_4:904535-904554 None:intergenic 55.0%
!! TCAGTAGGGCTTGGTGCATC+AGG + chr7_4:904536-904555 None:intergenic 55.0%
CAACGAGAAAGTGGTTCCGG+TGG - chr7_4:906630-906649 Msa1134430:CDS 55.0%
GAGAAAGTGGTTCCGGTGGA+AGG - chr7_4:906634-906653 Msa1134430:CDS 55.0%
AAAGTGGTTCCGGTGGAAGG+AGG - chr7_4:906637-906656 Msa1134430:CDS 55.0%
!! GATGGTTAGCCTCCTTCCAC+CGG + chr7_4:906649-906668 None:intergenic 55.0%
!! GAGTGTCGGGGTTCGAACAC+CGG + chr7_4:906253-906272 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 903574 906861 903574 ID=Msa1134430;Name=Msa1134430
chr7_4 mRNA 903574 906861 903574 ID=Msa1134430-mRNA-1;Parent=Msa1134430;Name=Msa1134430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=51|1|1|1|1|1|4|190|173
chr7_4 exon 903574 903993 903574 ID=Msa1134430-mRNA-1:exon:355;Parent=Msa1134430-mRNA-1
chr7_4 exon 904306 904346 904306 ID=Msa1134430-mRNA-1:exon:354;Parent=Msa1134430-mRNA-1
chr7_4 exon 905853 905914 905853 ID=Msa1134430-mRNA-1:exon:353;Parent=Msa1134430-mRNA-1
chr7_4 exon 906622 906861 906622 ID=Msa1134430-mRNA-1:exon:352;Parent=Msa1134430-mRNA-1
chr7_4 five_prime_UTR 906811 906861 906811 ID=Msa1134430-mRNA-1:five_prime_utr;Parent=Msa1134430-mRNA-1
chr7_4 CDS 906622 906810 906622 ID=Msa1134430-mRNA-1:cds;Parent=Msa1134430-mRNA-1
chr7_4 CDS 905853 905914 905853 ID=Msa1134430-mRNA-1:cds;Parent=Msa1134430-mRNA-1
chr7_4 CDS 904306 904346 904306 ID=Msa1134430-mRNA-1:cds;Parent=Msa1134430-mRNA-1
chr7_4 CDS 903764 903993 903764 ID=Msa1134430-mRNA-1:cds;Parent=Msa1134430-mRNA-1
chr7_4 three_prime_UTR 903574 903763 903574 ID=Msa1134430-mRNA-1:three_prime_utr;Parent=Msa1134430-mRNA-1
Gene Sequence

>Msa1134430

ATGAATTCCCTTGTTGTTGGTGGTGTAATTGGAGAAGTTTTAGACCCTTTTACAAATTCAGTGTCTTTGAGGGTTGTTTATGAAAATAACAAAGAAGTCATCAACGGTGGTGAGCTCAAACCGTCCCAAATAGTCAACCCACCAAGAGTTCAAGTTGGTGGAAATGACCTGAGAACCCTATACACTCTGGTGATGGTGAACCCTGATGCACCAAGCCCTACTGATCCTAATATGAGGGAATACCTGTATTGGATGGTTACCAATATTCCAGCGACTACAGGGACAACATTCGGACAAGAGATAGTGAGCTATGAAAATCCAAGACCAACAAGAGGGATTCATCGTGTGATATTTGTGTTGTTTAAGCAACCTTGTAGGCACACTATATTAGCTCCTCGATCGAGACAAAATTTTATTACAAGAGATTTTGCAGAAGTTTACAATCTTGGATTACCTGTTGCTGCTCTCTATTTCAATTGTCAACGAGAAAGTGGTTCCGGTGGAAGGAGGCTAACCATCTAA

Protein sequence

>Msa1134430

MNSLVVGGVIGEVLDPFTNSVSLRVVYENNKEVINGGELKPSQIVNPPRVQVGGNDLRTLYTLVMVNPDAPSPTDPNMREYLYWMVTNIPATTGTTFGQEIVSYENPRPTRGIHRVIFVLFKQPCRHTILAPRSRQNFITRDFAEVYNLGLPVAALYFNCQRESGSGGRRLTI*