Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487960 | XP_003598060.2 | 82.840 | 169 | 22 | 2 | 1 | 169 | 1 | 162 | 2.43e-95 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487960 | sp|F1MK05|RN170_BOVIN | 39.344 | 122 | 69 | 4 | 24 | 144 | 88 | 205 | 1.22e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487960 | G7J068 | 82.840 | 169 | 22 | 2 | 1 | 169 | 1 | 162 | 1.16e-95 | 283 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030710 | Msa0487960 | 0.800024 | 1.749679e-48 | -8.615850e-47 |
| Msa0087880 | Msa0487960 | 0.817334 | 3.480714e-52 | -8.615850e-47 |
| Msa0101150 | Msa0487960 | 0.802087 | 6.624114e-49 | -8.615850e-47 |
| Msa0101210 | Msa0487960 | 0.800485 | 1.409704e-48 | -8.615850e-47 |
| Msa0122540 | Msa0487960 | 0.800809 | 1.210719e-48 | -8.615850e-47 |
| Msa0130120 | Msa0487960 | 0.801217 | 9.991266e-49 | -8.615850e-47 |
| Msa0156780 | Msa0487960 | 0.808909 | 2.456844e-50 | -8.615850e-47 |
| Msa0174800 | Msa0487960 | 0.804289 | 2.320389e-49 | -8.615850e-47 |
| Msa0207530 | Msa0487960 | 0.826853 | 2.159393e-54 | -8.615850e-47 |
| Msa0207900 | Msa0487960 | 0.827657 | 1.386141e-54 | -8.615850e-47 |
| Msa0219140 | Msa0487960 | 0.802597 | 5.203377e-49 | -8.615850e-47 |
| Msa0222510 | Msa0487960 | 0.825801 | 3.844450e-54 | -8.615850e-47 |
| Msa0390950 | Msa0487960 | 0.835855 | 1.315584e-56 | -8.615850e-47 |
| Msa0470160 | Msa0487960 | 0.948500 | 8.335973e-107 | -8.615850e-47 |
| Msa0473320 | Msa0487960 | 0.811887 | 5.590907e-51 | -8.615850e-47 |
| Msa0301800 | Msa0487960 | 0.806962 | 6.374265e-50 | -8.615850e-47 |
| Msa0487960 | Msa0532910 | 0.802201 | 6.275852e-49 | -8.615850e-47 |
| Msa0487960 | Msa0587060 | 0.821826 | 3.283972e-53 | -8.615850e-47 |
| Msa0487960 | Msa0624890 | 0.829093 | 6.241361e-55 | -8.615850e-47 |
| Msa0487960 | Msa0641970 | 0.834348 | 3.157539e-56 | -8.615850e-47 |
| Msa0487960 | Msa0665010 | 0.813931 | 1.993640e-51 | -8.615850e-47 |
| Msa0487960 | Msa0667710 | 0.801280 | 9.700328e-49 | -8.615850e-47 |
| Msa0487960 | Msa0687320 | 0.802042 | 6.769810e-49 | -8.615850e-47 |
| Msa0487960 | Msa0688350 | 0.800340 | 1.509061e-48 | -8.615850e-47 |
| Msa0487960 | Msa0694170 | 0.808500 | 3.004074e-50 | -8.615850e-47 |
| Msa0487960 | Msa0761930 | 0.803659 | 3.136586e-49 | -8.615850e-47 |
| Msa0487960 | Msa0771940 | 0.803034 | 4.226377e-49 | -8.615850e-47 |
| Msa0487960 | Msa0875130 | 0.827532 | 1.485575e-54 | -8.615850e-47 |
| Msa0487960 | Msa0880370 | 0.805899 | 1.068002e-49 | -8.615850e-47 |
| Msa0487960 | Msa0976950 | 0.832289 | 1.029184e-55 | -8.615850e-47 |
| Msa0487960 | Msa0981300 | 0.842544 | 2.424047e-58 | -8.615850e-47 |
| Msa0487960 | Msa1070930 | 0.806776 | 6.979036e-50 | -8.615850e-47 |
| Msa0487960 | Msa1131010 | 0.801419 | 9.084139e-49 | -8.615850e-47 |
| Msa0487960 | Msa1199690 | 0.821205 | 4.570433e-53 | -8.615850e-47 |
| Msa0487960 | Msa1203090 | 0.814614 | 1.408209e-51 | -8.615850e-47 |
| Msa0487960 | Msa1211880 | 0.811746 | 6.000043e-51 | -8.615850e-47 |
| Msa0487960 | Msa1267800 | 0.822013 | 2.972996e-53 | -8.615850e-47 |
| Msa0487960 | Msa1279240 | 0.808270 | 3.363264e-50 | -8.615850e-47 |
| Msa0487960 | Msa1332180 | 0.800237 | 1.583319e-48 | -8.615850e-47 |
| Msa0487960 | Msa1370830 | 0.804803 | 1.812402e-49 | -8.615850e-47 |
| Msa0487960 | Msa1400600 | 0.812523 | 4.061120e-51 | -8.615850e-47 |
| Msa0487960 | Msa1420630 | 0.801971 | 6.999139e-49 | -8.615850e-47 |
| Msa0487960 | Msa1425570 | 0.801801 | 7.585899e-49 | -8.615850e-47 |
| Msa0487960 | Msa1433650 | 0.803059 | 4.176220e-49 | -8.615850e-47 |
| Msa0487960 | Msa1439160 | 0.818777 | 1.642390e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487960 | MtrunA17_Chr3g0077691 | 82.840 | 169 | 22 | 2 | 1 | 169 | 1 | 162 | 2.23e-99 | 283 |
| Msa0487960 | MtrunA17_Chr3g0077701 | 75.000 | 148 | 31 | 1 | 4 | 151 | 3 | 144 | 4.42e-77 | 228 |
| Msa0487960 | MtrunA17_Chr2g0326471 | 51.908 | 131 | 57 | 3 | 24 | 148 | 69 | 199 | 1.35e-39 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487960 | AT1G22510.1 | 54.688 | 128 | 54 | 3 | 24 | 149 | 10 | 135 | 2.63e-40 | 134 |
| Msa0487960 | AT1G72175.1 | 51.748 | 143 | 59 | 4 | 11 | 151 | 3 | 137 | 6.99e-40 | 133 |
| Msa0487960 | AT4G33940.2 | 32.857 | 140 | 87 | 2 | 4 | 143 | 60 | 192 | 1.23e-24 | 95.1 |
| Msa0487960 | AT4G33940.1 | 36.667 | 120 | 69 | 2 | 4 | 123 | 60 | 172 | 2.86e-24 | 95.5 |
| Msa0487960 | AT1G22510.2 | 49.533 | 107 | 50 | 3 | 45 | 149 | 49 | 153 | 4.42e-24 | 93.6 |
| Msa0487960 | AT1G72175.2 | 48.544 | 103 | 49 | 3 | 51 | 151 | 3 | 103 | 1.86e-21 | 85.5 |
Find 58 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGAGGAAAAGACATATT+AGG | 0.217850 | 3_4:+7094827 | None:intergenic |
| ATACTCAAAACAGATTAAAA+TGG | 0.255213 | 3_4:+7095302 | None:intergenic |
| ACCTATTGAACATCGAATAT+TGG | 0.256788 | 3_4:-7094426 | Msa0487960:three_prime_UTR |
| CCTCCCTCCGTGTGAGTAAT+TGG | 0.304418 | 3_4:+7095244 | None:intergenic |
| CAAACTGTATTATCCAAGTT+TGG | 0.336066 | 3_4:-7095081 | Msa0487960:CDS |
| GTGAAAACAAGAAGATTAAT+AGG | 0.362944 | 3_4:+7095010 | None:intergenic |
| GAACATCGATCGTTTGTTGC+TGG | 0.371600 | 3_4:+7095181 | None:intergenic |
| CAGAGCTCGTGTCTTCATTA+CGG | 0.376209 | 3_4:-7094801 | Msa0487960:intron |
| CAAGAGGAAAAGACATATTA+GGG | 0.384189 | 3_4:+7094828 | None:intergenic |
| CCTACTAGAGAATGGATATA+TGG | 0.391094 | 3_4:-7095336 | Msa0487960:five_prime_UTR |
| TCCAATATTCGATGTTCAAT+AGG | 0.396103 | 3_4:+7094425 | None:intergenic |
| TTCTACACTAAGGTACCTTC+TGG | 0.408043 | 3_4:+7094507 | None:intergenic |
| GCAAAATATTGGAATTCAAA+TGG | 0.414002 | 3_4:+7094388 | None:intergenic |
| CATCTCCAACACTCCGACTA+AGG | 0.436334 | 3_4:+7094665 | None:intergenic |
| TACTCAAAACAGATTAAAAT+GGG | 0.441754 | 3_4:+7095303 | None:intergenic |
| CCATATATCCATTCTCTAGT+AGG | 0.459574 | 3_4:+7095336 | None:intergenic |
| GTCAGGCAAATTGCTCTCAC+TGG | 0.470875 | 3_4:-7095111 | Msa0487960:CDS |
| GTAACTGACTAATAAATTTG+AGG | 0.471229 | 3_4:+7095392 | None:intergenic |
| TGAGCAATACTAGCATTAGA+TGG | 0.474337 | 3_4:+7094905 | None:intergenic |
| AGAAGGAAGCTACTGATCAT+AGG | 0.479166 | 3_4:+7094626 | None:intergenic |
| AAAAGCCTTCTTAAAAGAAA+CGG | 0.484810 | 3_4:+7094866 | None:intergenic |
| AAACTTCCAACTCCCATGTC+AGG | 0.507648 | 3_4:-7095128 | Msa0487960:CDS |
| TCAGTAGCTTCCTTCTTCTC+CGG | 0.509944 | 3_4:-7094619 | Msa0487960:three_prime_UTR |
| TGAGAGCAATTTGCCTGACA+TGG | 0.514810 | 3_4:+7095115 | None:intergenic |
| GAGAAGAATATTGCCAAACT+TGG | 0.518118 | 3_4:+7095068 | None:intergenic |
| AATGCGAACCTACTAGAGAA+TGG | 0.518414 | 3_4:-7095344 | Msa0487960:five_prime_UTR |
| AATTTGCCTGACATGGGAGT+TGG | 0.522076 | 3_4:+7095122 | None:intergenic |
| GGGAGGGAGAGAGATGGATG+TGG | 0.522212 | 3_4:-7095227 | Msa0487960:exon |
| GAATGGATATATGGTGGCAT+TGG | 0.528687 | 3_4:-7095327 | Msa0487960:five_prime_UTR |
| TAATTTCCATCCGGAGAAGA+AGG | 0.534235 | 3_4:+7094609 | None:intergenic |
| CAACATAGATAATTTCCATC+CGG | 0.537346 | 3_4:+7094600 | None:intergenic |
| CACGGAGGGAGGGAGAGAGA+TGG | 0.542710 | 3_4:-7095233 | Msa0487960:exon |
| ATCGTTGTTGTCGTCAACAT+CGG | 0.562374 | 3_4:+7094988 | None:intergenic |
| GAGATCCTTAGTCGGAGTGT+TGG | 0.564250 | 3_4:-7094670 | Msa0487960:CDS |
| TAGCTTCCTTCTTCTCCGGA+TGG | 0.565819 | 3_4:-7094615 | Msa0487960:three_prime_UTR |
| GGACATTTGCAAGGATGAAG+AGG | 0.567032 | 3_4:+7095046 | None:intergenic |
| ATAATACATATTCTACACTA+AGG | 0.577431 | 3_4:+7094497 | None:intergenic |
| CGACAACAACGATTATGAGC+AGG | 0.579317 | 3_4:-7094978 | Msa0487960:CDS |
| TGGAGATGACTTCGAACCGT+TGG | 0.579560 | 3_4:-7094650 | Msa0487960:CDS |
| ACACGAGCTCTGATAACAAG+AGG | 0.581391 | 3_4:+7094812 | None:intergenic |
| CCAATTACTCACACGGAGGG+AGG | 0.589219 | 3_4:-7095244 | Msa0487960:five_prime_UTR |
| CAGGTAGTTGTGAATCGTGT+CGG | 0.591095 | 3_4:-7094697 | Msa0487960:CDS |
| TTATCTATGTTGCATGTGTA+CGG | 0.592223 | 3_4:-7094589 | Msa0487960:three_prime_UTR |
| CAATTACTCACACGGAGGGA+GGG | 0.595719 | 3_4:-7095243 | Msa0487960:five_prime_UTR |
| CCTCCGTGTGAGTAATTGGA+AGG | 0.607202 | 3_4:+7095248 | None:intergenic |
| TTTCCTTCCAATTACTCACA+CGG | 0.607533 | 3_4:-7095251 | Msa0487960:five_prime_UTR |
| GAGAGCAATTTGCCTGACAT+GGG | 0.611294 | 3_4:+7095116 | None:intergenic |
| CATCGATGTTCAATCTGTCA+CGG | 0.615902 | 3_4:-7095151 | Msa0487960:CDS |
| CTTCCAATTACTCACACGGA+GGG | 0.619574 | 3_4:-7095247 | Msa0487960:five_prime_UTR |
| TTAATAGGACGACGACATAG+AGG | 0.635128 | 3_4:+7095025 | None:intergenic |
| TCTATTGACATCATTCCAGA+AGG | 0.639116 | 3_4:-7094522 | Msa0487960:three_prime_UTR |
| TGAGCAGGATCGTCTGATTG+TGG | 0.642021 | 3_4:-7094963 | Msa0487960:CDS |
| CGACATAGAGGACATTTGCA+AGG | 0.645789 | 3_4:+7095037 | None:intergenic |
| ACTAGAGAATGGATATATGG+TGG | 0.657535 | 3_4:-7095333 | Msa0487960:five_prime_UTR |
| GCTACTGATCATAGGACCAA+CGG | 0.665436 | 3_4:+7094634 | None:intergenic |
| TCGGATTTGAGATCCTTAGT+CGG | 0.681101 | 3_4:-7094678 | Msa0487960:CDS |
| CCTTCCAATTACTCACACGG+AGG | 0.708375 | 3_4:-7095248 | Msa0487960:five_prime_UTR |
| GATGTGGAGCATCATAGCAG+CGG | 0.708662 | 3_4:-7095211 | Msa0487960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTCAAATTATCATC+AGG | - | chr3_4:7095077-7095096 | Msa0487960:CDS | 15.0% |
| !! | TTTATATTCAAATTATCATC+AGG | - | chr3_4:7095077-7095096 | Msa0487960:CDS | 15.0% |
| !! | TACTCAAAACAGATTAAAAT+GGG | + | chr3_4:7094493-7094512 | None:intergenic | 20.0% |
| !! | ATACTCAAAACAGATTAAAA+TGG | + | chr3_4:7094494-7094513 | None:intergenic | 20.0% |
| !! | ATAATACATATTCTACACTA+AGG | + | chr3_4:7095299-7095318 | None:intergenic | 20.0% |
| !! | TACTCAAAACAGATTAAAAT+GGG | + | chr3_4:7094493-7094512 | None:intergenic | 20.0% |
| !! | ATACTCAAAACAGATTAAAA+TGG | + | chr3_4:7094494-7094513 | None:intergenic | 20.0% |
| !! | ATAATACATATTCTACACTA+AGG | + | chr3_4:7095299-7095318 | None:intergenic | 20.0% |
| ! | GTAACTGACTAATAAATTTG+AGG | + | chr3_4:7094404-7094423 | None:intergenic | 25.0% |
| ! | GTGAAAACAAGAAGATTAAT+AGG | + | chr3_4:7094786-7094805 | None:intergenic | 25.0% |
| ! | AAAAGCCTTCTTAAAAGAAA+CGG | + | chr3_4:7094930-7094949 | None:intergenic | 25.0% |
| ! | GTAACTGACTAATAAATTTG+AGG | + | chr3_4:7094404-7094423 | None:intergenic | 25.0% |
| ! | GTGAAAACAAGAAGATTAAT+AGG | + | chr3_4:7094786-7094805 | None:intergenic | 25.0% |
| ! | AAAAGCCTTCTTAAAAGAAA+CGG | + | chr3_4:7094930-7094949 | None:intergenic | 25.0% |
| CAAACTGTATTATCCAAGTT+TGG | - | chr3_4:7094712-7094731 | Msa0487960:intron | 30.0% | |
| !! | ATCTTCCGTTTCTTTTAAGA+AGG | - | chr3_4:7094922-7094941 | Msa0487960:CDS | 30.0% |
| CAAGAGGAAAAGACATATTA+GGG | + | chr3_4:7094968-7094987 | None:intergenic | 30.0% | |
| ACAAGAGGAAAAGACATATT+AGG | + | chr3_4:7094969-7094988 | None:intergenic | 30.0% | |
| CAACATAGATAATTTCCATC+CGG | + | chr3_4:7095196-7095215 | None:intergenic | 30.0% | |
| TTATCTATGTTGCATGTGTA+CGG | - | chr3_4:7095204-7095223 | Msa0487960:CDS | 30.0% | |
| ACCTATTGAACATCGAATAT+TGG | - | chr3_4:7095367-7095386 | Msa0487960:five_prime_UTR | 30.0% | |
| TCCAATATTCGATGTTCAAT+AGG | + | chr3_4:7095371-7095390 | None:intergenic | 30.0% | |
| CAAACTGTATTATCCAAGTT+TGG | - | chr3_4:7094712-7094731 | Msa0487960:intron | 30.0% | |
| !! | ATCTTCCGTTTCTTTTAAGA+AGG | - | chr3_4:7094922-7094941 | Msa0487960:CDS | 30.0% |
| CAAGAGGAAAAGACATATTA+GGG | + | chr3_4:7094968-7094987 | None:intergenic | 30.0% | |
| ACAAGAGGAAAAGACATATT+AGG | + | chr3_4:7094969-7094988 | None:intergenic | 30.0% | |
| CAACATAGATAATTTCCATC+CGG | + | chr3_4:7095196-7095215 | None:intergenic | 30.0% | |
| TTATCTATGTTGCATGTGTA+CGG | - | chr3_4:7095204-7095223 | Msa0487960:CDS | 30.0% | |
| ACCTATTGAACATCGAATAT+TGG | - | chr3_4:7095367-7095386 | Msa0487960:five_prime_UTR | 30.0% | |
| TCCAATATTCGATGTTCAAT+AGG | + | chr3_4:7095371-7095390 | None:intergenic | 30.0% | |
| CCATATATCCATTCTCTAGT+AGG | + | chr3_4:7094460-7094479 | None:intergenic | 35.0% | |
| CCTACTAGAGAATGGATATA+TGG | - | chr3_4:7094457-7094476 | Msa0487960:three_prime_UTR | 35.0% | |
| ACTAGAGAATGGATATATGG+TGG | - | chr3_4:7094460-7094479 | Msa0487960:three_prime_UTR | 35.0% | |
| !! | GTTTTGAGTATGACAACATC+AGG | - | chr3_4:7094503-7094522 | Msa0487960:three_prime_UTR | 35.0% |
| TTTCCTTCCAATTACTCACA+CGG | - | chr3_4:7094542-7094561 | Msa0487960:three_prime_UTR | 35.0% | |
| GAGAAGAATATTGCCAAACT+TGG | + | chr3_4:7094728-7094747 | None:intergenic | 35.0% | |
| TGAGCAATACTAGCATTAGA+TGG | + | chr3_4:7094891-7094910 | None:intergenic | 35.0% | |
| ATAAACAACAACAACGACGA+CGG | + | chr3_4:7095062-7095081 | None:intergenic | 35.0% | |
| TCTATTGACATCATTCCAGA+AGG | - | chr3_4:7095271-7095290 | Msa0487960:five_prime_UTR | 35.0% | |
| CCATATATCCATTCTCTAGT+AGG | + | chr3_4:7094460-7094479 | None:intergenic | 35.0% | |
| CCTACTAGAGAATGGATATA+TGG | - | chr3_4:7094457-7094476 | Msa0487960:three_prime_UTR | 35.0% | |
| ACTAGAGAATGGATATATGG+TGG | - | chr3_4:7094460-7094479 | Msa0487960:three_prime_UTR | 35.0% | |
| !! | GTTTTGAGTATGACAACATC+AGG | - | chr3_4:7094503-7094522 | Msa0487960:three_prime_UTR | 35.0% |
| TTTCCTTCCAATTACTCACA+CGG | - | chr3_4:7094542-7094561 | Msa0487960:three_prime_UTR | 35.0% | |
| GAGAAGAATATTGCCAAACT+TGG | + | chr3_4:7094728-7094747 | None:intergenic | 35.0% | |
| TGAGCAATACTAGCATTAGA+TGG | + | chr3_4:7094891-7094910 | None:intergenic | 35.0% | |
| ATAAACAACAACAACGACGA+CGG | + | chr3_4:7095062-7095081 | None:intergenic | 35.0% | |
| TCTATTGACATCATTCCAGA+AGG | - | chr3_4:7095271-7095290 | Msa0487960:five_prime_UTR | 35.0% | |
| AATGCGAACCTACTAGAGAA+TGG | - | chr3_4:7094449-7094468 | Msa0487960:three_prime_UTR | 40.0% | |
| GAATGGATATATGGTGGCAT+TGG | - | chr3_4:7094466-7094485 | Msa0487960:three_prime_UTR | 40.0% | |
| CATCGATGTTCAATCTGTCA+CGG | - | chr3_4:7094642-7094661 | Msa0487960:CDS | 40.0% | |
| TTAATAGGACGACGACATAG+AGG | + | chr3_4:7094771-7094790 | None:intergenic | 40.0% | |
| ATCGTTGTTGTCGTCAACAT+CGG | + | chr3_4:7094808-7094827 | None:intergenic | 40.0% | |
| ! | TCGGATTTGAGATCCTTAGT+CGG | - | chr3_4:7095115-7095134 | Msa0487960:CDS | 40.0% |
| AGAAGGAAGCTACTGATCAT+AGG | + | chr3_4:7095170-7095189 | None:intergenic | 40.0% | |
| TAATTTCCATCCGGAGAAGA+AGG | + | chr3_4:7095187-7095206 | None:intergenic | 40.0% | |
| ! | TTCTACACTAAGGTACCTTC+TGG | + | chr3_4:7095289-7095308 | None:intergenic | 40.0% |
| AATGCGAACCTACTAGAGAA+TGG | - | chr3_4:7094449-7094468 | Msa0487960:three_prime_UTR | 40.0% | |
| GAATGGATATATGGTGGCAT+TGG | - | chr3_4:7094466-7094485 | Msa0487960:three_prime_UTR | 40.0% | |
| CATCGATGTTCAATCTGTCA+CGG | - | chr3_4:7094642-7094661 | Msa0487960:CDS | 40.0% | |
| TTAATAGGACGACGACATAG+AGG | + | chr3_4:7094771-7094790 | None:intergenic | 40.0% | |
| ATCGTTGTTGTCGTCAACAT+CGG | + | chr3_4:7094808-7094827 | None:intergenic | 40.0% | |
| ! | TCGGATTTGAGATCCTTAGT+CGG | - | chr3_4:7095115-7095134 | Msa0487960:CDS | 40.0% |
| AGAAGGAAGCTACTGATCAT+AGG | + | chr3_4:7095170-7095189 | None:intergenic | 40.0% | |
| TAATTTCCATCCGGAGAAGA+AGG | + | chr3_4:7095187-7095206 | None:intergenic | 40.0% | |
| ! | TTCTACACTAAGGTACCTTC+TGG | + | chr3_4:7095289-7095308 | None:intergenic | 40.0% |
| CTTCCAATTACTCACACGGA+GGG | - | chr3_4:7094546-7094565 | Msa0487960:three_prime_UTR | 45.0% | |
| ! | GAACATCGATCGTTTGTTGC+TGG | + | chr3_4:7094615-7094634 | None:intergenic | 45.0% |
| AAACTTCCAACTCCCATGTC+AGG | - | chr3_4:7094665-7094684 | Msa0487960:CDS | 45.0% | |
| AATTTGCCTGACATGGGAGT+TGG | + | chr3_4:7094674-7094693 | None:intergenic | 45.0% | |
| GAGAGCAATTTGCCTGACAT+GGG | + | chr3_4:7094680-7094699 | None:intergenic | 45.0% | |
| TGAGAGCAATTTGCCTGACA+TGG | + | chr3_4:7094681-7094700 | None:intergenic | 45.0% | |
| GGACATTTGCAAGGATGAAG+AGG | + | chr3_4:7094750-7094769 | None:intergenic | 45.0% | |
| CGACATAGAGGACATTTGCA+AGG | + | chr3_4:7094759-7094778 | None:intergenic | 45.0% | |
| CGACAACAACGATTATGAGC+AGG | - | chr3_4:7094815-7094834 | Msa0487960:CDS | 45.0% | |
| ! | ACACGAGCTCTGATAACAAG+AGG | + | chr3_4:7094984-7095003 | None:intergenic | 45.0% |
| CAGAGCTCGTGTCTTCATTA+CGG | - | chr3_4:7094992-7095011 | Msa0487960:CDS | 45.0% | |
| CAGGTAGTTGTGAATCGTGT+CGG | - | chr3_4:7095096-7095115 | Msa0487960:CDS | 45.0% | |
| GCTACTGATCATAGGACCAA+CGG | + | chr3_4:7095162-7095181 | None:intergenic | 45.0% | |
| TCAGTAGCTTCCTTCTTCTC+CGG | - | chr3_4:7095174-7095193 | Msa0487960:CDS | 45.0% | |
| CTTCCAATTACTCACACGGA+GGG | - | chr3_4:7094546-7094565 | Msa0487960:three_prime_UTR | 45.0% | |
| ! | GAACATCGATCGTTTGTTGC+TGG | + | chr3_4:7094615-7094634 | None:intergenic | 45.0% |
| AAACTTCCAACTCCCATGTC+AGG | - | chr3_4:7094665-7094684 | Msa0487960:CDS | 45.0% | |
| AATTTGCCTGACATGGGAGT+TGG | + | chr3_4:7094674-7094693 | None:intergenic | 45.0% | |
| GAGAGCAATTTGCCTGACAT+GGG | + | chr3_4:7094680-7094699 | None:intergenic | 45.0% | |
| TGAGAGCAATTTGCCTGACA+TGG | + | chr3_4:7094681-7094700 | None:intergenic | 45.0% | |
| GGACATTTGCAAGGATGAAG+AGG | + | chr3_4:7094750-7094769 | None:intergenic | 45.0% | |
| CGACATAGAGGACATTTGCA+AGG | + | chr3_4:7094759-7094778 | None:intergenic | 45.0% | |
| CGACAACAACGATTATGAGC+AGG | - | chr3_4:7094815-7094834 | Msa0487960:CDS | 45.0% | |
| ! | ACACGAGCTCTGATAACAAG+AGG | + | chr3_4:7094984-7095003 | None:intergenic | 45.0% |
| CAGAGCTCGTGTCTTCATTA+CGG | - | chr3_4:7094992-7095011 | Msa0487960:CDS | 45.0% | |
| CAGGTAGTTGTGAATCGTGT+CGG | - | chr3_4:7095096-7095115 | Msa0487960:CDS | 45.0% | |
| GCTACTGATCATAGGACCAA+CGG | + | chr3_4:7095162-7095181 | None:intergenic | 45.0% | |
| TCAGTAGCTTCCTTCTTCTC+CGG | - | chr3_4:7095174-7095193 | Msa0487960:CDS | 45.0% | |
| CCTCCGTGTGAGTAATTGGA+AGG | + | chr3_4:7094548-7094567 | None:intergenic | 50.0% | |
| CCTTCCAATTACTCACACGG+AGG | - | chr3_4:7094545-7094564 | Msa0487960:three_prime_UTR | 50.0% | |
| CAATTACTCACACGGAGGGA+GGG | - | chr3_4:7094550-7094569 | Msa0487960:three_prime_UTR | 50.0% | |
| ! | GATGTGGAGCATCATAGCAG+CGG | - | chr3_4:7094582-7094601 | Msa0487960:three_prime_UTR | 50.0% |
| GTCAGGCAAATTGCTCTCAC+TGG | - | chr3_4:7094682-7094701 | Msa0487960:CDS | 50.0% | |
| TGAGCAGGATCGTCTGATTG+TGG | - | chr3_4:7094830-7094849 | Msa0487960:CDS | 50.0% | |
| GAGATCCTTAGTCGGAGTGT+TGG | - | chr3_4:7095123-7095142 | Msa0487960:CDS | 50.0% | |
| CATCTCCAACACTCCGACTA+AGG | + | chr3_4:7095131-7095150 | None:intergenic | 50.0% | |
| TGGAGATGACTTCGAACCGT+TGG | - | chr3_4:7095143-7095162 | Msa0487960:CDS | 50.0% | |
| TAGCTTCCTTCTTCTCCGGA+TGG | - | chr3_4:7095178-7095197 | Msa0487960:CDS | 50.0% | |
| CCTCCGTGTGAGTAATTGGA+AGG | + | chr3_4:7094548-7094567 | None:intergenic | 50.0% | |
| CCTTCCAATTACTCACACGG+AGG | - | chr3_4:7094545-7094564 | Msa0487960:three_prime_UTR | 50.0% | |
| CAATTACTCACACGGAGGGA+GGG | - | chr3_4:7094550-7094569 | Msa0487960:three_prime_UTR | 50.0% | |
| ! | GATGTGGAGCATCATAGCAG+CGG | - | chr3_4:7094582-7094601 | Msa0487960:three_prime_UTR | 50.0% |
| GTCAGGCAAATTGCTCTCAC+TGG | - | chr3_4:7094682-7094701 | Msa0487960:CDS | 50.0% | |
| TGAGCAGGATCGTCTGATTG+TGG | - | chr3_4:7094830-7094849 | Msa0487960:CDS | 50.0% | |
| GAGATCCTTAGTCGGAGTGT+TGG | - | chr3_4:7095123-7095142 | Msa0487960:CDS | 50.0% | |
| CATCTCCAACACTCCGACTA+AGG | + | chr3_4:7095131-7095150 | None:intergenic | 50.0% | |
| TGGAGATGACTTCGAACCGT+TGG | - | chr3_4:7095143-7095162 | Msa0487960:CDS | 50.0% | |
| TAGCTTCCTTCTTCTCCGGA+TGG | - | chr3_4:7095178-7095197 | Msa0487960:CDS | 50.0% | |
| CCTCCCTCCGTGTGAGTAAT+TGG | + | chr3_4:7094552-7094571 | None:intergenic | 55.0% | |
| CCAATTACTCACACGGAGGG+AGG | - | chr3_4:7094549-7094568 | Msa0487960:three_prime_UTR | 55.0% | |
| CCTCCCTCCGTGTGAGTAAT+TGG | + | chr3_4:7094552-7094571 | None:intergenic | 55.0% | |
| CCAATTACTCACACGGAGGG+AGG | - | chr3_4:7094549-7094568 | Msa0487960:three_prime_UTR | 55.0% | |
| GGGAGGGAGAGAGATGGATG+TGG | - | chr3_4:7094566-7094585 | Msa0487960:three_prime_UTR | 60.0% | |
| GGGAGGGAGAGAGATGGATG+TGG | - | chr3_4:7094566-7094585 | Msa0487960:three_prime_UTR | 60.0% | |
| CACGGAGGGAGGGAGAGAGA+TGG | - | chr3_4:7094560-7094579 | Msa0487960:three_prime_UTR | 65.0% | |
| CACGGAGGGAGGGAGAGAGA+TGG | - | chr3_4:7094560-7094579 | Msa0487960:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 7094390 | 7095425 | 7094390 | ID=Msa0487960;Name=Msa0487960 |
| chr3_4 | mRNA | 7094390 | 7095425 | 7094390 | ID=Msa0487960-mRNA-1;Parent=Msa0487960;Name=Msa0487960-mRNA-1;_AED=0.26;_eAED=0.26;_QI=189|1|1|1|1|1|2|252|169 |
| chr3_4 | exon | 7094390 | 7094716 | 7094390 | ID=Msa0487960-mRNA-1:exon:2553;Parent=Msa0487960-mRNA-1 |
| chr3_4 | exon | 7094802 | 7095425 | 7094802 | ID=Msa0487960-mRNA-1:exon:2552;Parent=Msa0487960-mRNA-1 |
| chr3_4 | five_prime_UTR | 7095237 | 7095425 | 7095237 | ID=Msa0487960-mRNA-1:five_prime_utr;Parent=Msa0487960-mRNA-1 |
| chr3_4 | CDS | 7094802 | 7095236 | 7094802 | ID=Msa0487960-mRNA-1:cds;Parent=Msa0487960-mRNA-1 |
| chr3_4 | CDS | 7094642 | 7094716 | 7094642 | ID=Msa0487960-mRNA-1:cds;Parent=Msa0487960-mRNA-1 |
| chr3_4 | three_prime_UTR | 7094390 | 7094641 | 7094390 | ID=Msa0487960-mRNA-1:three_prime_utr;Parent=Msa0487960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
