AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688350 MtrunA17_Chr7g0276151 96.475 766 26 1 22 787 1 765 0.0 1530
Msa0688350 MtrunA17_Chr8g0345971 65.059 767 254 8 22 780 1 761 0.0 1010
Msa0688350 MtrunA17_Chr1g0189251 65.576 764 250 10 22 780 1 756 0.0 1008
Msa0688350 MtrunA17_Chr8g0345991 63.554 771 262 12 22 784 1 760 0.0 956
Msa0688350 MtrunA17_Chr8g0345981 63.001 773 267 12 22 784 1 764 0.0 943
Msa0688350 MtrunA17_Chr2g0303881 65.176 738 235 12 59 784 5 732 0.0 917
Msa0688350 MtrunA17_Chr8g0345961 61.026 780 270 13 22 784 1 763 0.0 889
Msa0688350 MtrunA17_Chr7g0248871 49.868 760 362 10 32 777 9 763 0.0 734
Msa0688350 MtrunA17_Chr1g0189561 50.394 762 351 14 29 777 13 760 0.0 718
Msa0688350 MtrunA17_Chr7g0248861 49.164 598 288 9 50 633 27 622 0.0 567
Msa0688350 MtrunA17_Chr7g0248861 60.256 234 90 3 155 386 627 859 1.13e-82 282
Msa0688350 MtrunA17_Chr2g0300751 39.589 778 423 15 32 775 6 770 0.0 550
Msa0688350 MtrunA17_Chr4g0037221 41.547 763 386 19 53 780 33 770 1.19e-180 536
Msa0688350 MtrunA17_Chr7g0262161 40.682 762 399 17 48 778 22 761 3.18e-179 533
Msa0688350 MtrunA17_Chr1g0204321 39.309 781 427 15 31 780 15 779 1.30e-178 531
Msa0688350 MtrunA17_Chr4g0070391 39.924 789 405 19 22 778 1 752 1.83e-178 530
Msa0688350 MtrunA17_Chr4g0053781 40.234 768 408 16 37 778 13 755 1.98e-176 525
Msa0688350 MtrunA17_Chr5g0401511 40.788 787 406 19 22 778 5 761 7.07e-175 521
Msa0688350 MtrunA17_Chr1g0152771 40.103 773 420 13 32 778 8 763 1.57e-172 515
Msa0688350 MtrunA17_Chr4g0020651 40.702 769 409 15 32 775 8 754 5.80e-167 501
Msa0688350 MtrunA17_Chr4g0057061 39.520 792 391 26 29 777 28 774 5.78e-165 496
Msa0688350 MtrunA17_Chr8g0344331 39.764 762 397 26 53 777 38 774 4.24e-160 484
Msa0688350 MtrunA17_Chr8g0344971 37.848 790 416 19 29 778 6 760 2.04e-158 479
Msa0688350 MtrunA17_Chr3g0134621 40.533 750 374 18 53 778 35 736 1.16e-156 473
Msa0688350 MtrunA17_Chr7g0246461 36.856 776 417 16 34 778 7 740 1.27e-151 461
Msa0688350 MtrunA17_Chr5g0398241 39.258 782 396 20 29 777 18 753 2.62e-149 455
Msa0688350 MtrunA17_Chr5g0398331 38.532 763 392 21 45 777 35 750 1.39e-148 453
Msa0688350 MtrunA17_Chr5g0398401 39.003 782 398 20 29 777 18 753 1.08e-147 451
Msa0688350 MtrunA17_Chr8g0369891 37.187 718 386 16 90 777 70 752 5.41e-147 449
Msa0688350 MtrunA17_Chr3g0120521 37.902 715 390 17 101 780 77 772 2.12e-145 446
Msa0688350 MtrunA17_Chr5g0407701 37.274 719 400 16 90 784 65 756 8.20e-144 441
Msa0688350 MtrunA17_Chr4g0076611 38.819 711 385 16 99 777 1 693 2.12e-143 438
Msa0688350 MtrunA17_Chr5g0398351 39.258 782 396 20 29 777 769 1504 2.51e-142 455
Msa0688350 MtrunA17_Chr5g0398351 38.845 762 388 21 47 777 19 733 5.61e-136 438
Msa0688350 MtrunA17_Chr4g0026641 37.452 777 427 21 31 777 6 753 1.26e-141 435
Msa0688350 MtrunA17_Chr2g0285121 39.090 747 358 23 99 778 67 783 9.71e-141 434
Msa0688350 MtrunA17_Chr8g0377961 37.103 787 425 20 33 783 28 780 2.90e-140 432
Msa0688350 MtrunA17_Chr5g0398311 37.056 788 408 21 30 777 7 746 1.77e-139 429
Msa0688350 MtrunA17_Chr2g0285111 38.514 740 367 21 101 778 73 786 1.89e-138 428
Msa0688350 MtrunA17_Chr7g0250371 36.742 792 427 25 34 777 19 784 1.64e-136 423
Msa0688350 MtrunA17_Chr4g0057531 38.974 721 381 19 101 781 79 780 2.40e-135 419
Msa0688350 MtrunA17_Chr4g0057471 38.687 716 379 23 101 777 14 708 3.13e-135 417
Msa0688350 MtrunA17_Chr8g0354771 36.082 776 433 19 40 777 13 763 1.21e-133 415
Msa0688350 MtrunA17_Chr7g0250391 36.160 802 443 25 23 777 3 782 4.91e-133 414
Msa0688350 MtrunA17_Chr4g0057461 40.571 631 330 17 174 771 3 621 5.08e-133 409
Msa0688350 MtrunA17_Chr7g0250411 36.115 803 430 26 34 784 19 790 4.20e-131 409
Msa0688350 MtrunA17_Chr7g0227991 34.197 772 432 22 29 777 15 733 1.32e-129 403
Msa0688350 MtrunA17_Chr4g0057481 39.583 672 353 21 141 777 36 689 1.55e-129 402
Msa0688350 MtrunA17_Chr3g0136151 37.119 722 389 19 99 778 64 762 4.68e-129 403
Msa0688350 MtrunA17_Chr7g0250331 37.257 773 383 24 85 777 56 806 1.91e-128 402
Msa0688350 MtrunA17_Chr4g0057491 39.403 637 335 16 174 777 3 621 8.86e-128 395
Msa0688350 MtrunA17_Chr3g0143251 35.435 793 434 23 30 780 11 767 1.88e-127 399
Msa0688350 MtrunA17_Chr1g0146251 34.596 792 427 24 26 781 2 738 3.49e-127 397
Msa0688350 MtrunA17_Chr5g0423261 38.801 634 345 16 173 777 2 621 8.49e-127 392
Msa0688350 MtrunA17_Chr1g0170081 34.987 786 426 25 28 782 4 735 1.12e-126 395
Msa0688350 MtrunA17_Chr6g0470881 35.180 776 425 25 30 780 10 732 3.02e-126 394
Msa0688350 MtrunA17_Chr8g0351011 36.879 705 387 19 99 779 83 753 9.05e-126 394
Msa0688350 MtrunA17_Chr1g0146271 33.671 790 433 23 27 781 3 736 2.14e-125 392
Msa0688350 MtrunA17_Chr7g0266051 36.746 713 390 22 92 777 27 705 1.29e-124 389
Msa0688350 MtrunA17_Chr8g0354741 37.991 637 344 14 168 777 21 633 6.54e-122 380
Msa0688350 MtrunA17_Chr8g0334521 34.282 773 434 23 30 781 18 737 1.25e-121 382
Msa0688350 MtrunA17_Chr6g0470851 33.892 776 435 23 29 781 13 733 2.18e-121 382
Msa0688350 MtrunA17_Chr7g0246451 35.180 722 404 21 83 777 61 745 2.03e-119 377
Msa0688350 MtrunA17_Chr4g0057511 39.075 627 341 18 178 777 3 615 6.10e-119 372
Msa0688350 MtrunA17_Chr3g0079971 34.866 783 432 21 27 781 3 735 1.62e-118 374
Msa0688350 MtrunA17_Chr8g0334491 35.221 724 396 21 80 780 57 730 5.63e-116 367
Msa0688350 MtrunA17_Chr5g0439271 38.049 615 312 17 211 777 8 601 2.68e-108 343
Msa0688350 MtrunA17_Chr8g0376841 37.523 541 296 13 83 598 62 585 3.73e-97 314
Msa0688350 MtrunA17_Chr2g0298601 34.161 685 368 25 101 719 91 758 1.37e-96 318
Msa0688350 MtrunA17_Chr4g0075331 30.973 678 392 17 101 717 16 678 2.11e-84 284
Msa0688350 MtrunA17_Chr2g0302951 29.615 753 438 21 56 741 76 803 9.34e-81 276
Msa0688350 MtrunA17_Chr8g0380961 30.835 707 408 23 101 741 119 810 4.36e-80 275
Msa0688350 MtrunA17_Chr2g0301011 34.082 534 274 14 141 663 17 483 8.36e-79 262
Msa0688350 MtrunA17_Chr5g0447171 35.484 527 246 17 320 777 6 507 2.96e-74 250
Msa0688350 MtrunA17_Chr7g0250481 46.341 287 142 7 494 777 520 797 1.21e-63 228
Msa0688350 MtrunA17_Chr7g0250481 36.827 353 203 8 53 390 32 379 7.30e-59 214
Msa0688350 MtrunA17_Chr7g0261701 42.475 299 160 5 479 777 3 289 3.60e-63 213
Msa0688350 MtrunA17_Chr7g0250441 43.686 293 147 8 498 784 9 289 4.12e-61 208
Msa0688350 MtrunA17_Chr4g0035881 37.640 356 176 9 247 596 4 319 2.12e-59 204
Msa0688350 MtrunA17_Chr7g0250461 36.000 375 209 11 34 390 19 380 7.23e-58 205
Msa0688350 MtrunA17_Chr3g0143241 34.353 425 226 12 30 424 11 412 2.39e-57 205
Msa0688350 MtrunA17_Chr4g0071871 38.436 307 174 7 98 391 88 392 5.25e-57 209
Msa0688350 MtrunA17_Chr4g0071871 40.773 233 114 6 500 719 537 758 3.17e-37 150
Msa0688350 MtrunA17_Chr6g0480721 40.594 303 158 8 485 783 321 605 7.81e-57 206
Msa0688350 MtrunA17_Chr6g0480721 37.500 304 178 4 103 403 9 303 3.76e-53 195
Msa0688350 MtrunA17_Chr8g0346361 37.621 311 175 6 475 781 205 500 2.87e-55 198
Msa0688350 MtrunA17_Chr8g0346361 41.237 194 97 4 190 381 7 185 2.75e-39 152
Msa0688350 MtrunA17_Chr4g0026651 39.667 300 146 7 114 380 2 299 8.35e-55 191
Msa0688350 MtrunA17_Chr7g0261691 44.915 236 119 4 162 389 5 237 2.97e-54 191
Msa0688350 MtrunA17_Chr5g0418921 64.964 137 47 1 490 626 1 136 7.60e-53 181
Msa0688350 MtrunA17_Chr4g0026661 39.615 260 142 5 521 777 12 259 3.69e-52 182
Msa0688350 MtrunA17_Chr3g0097061 38.214 280 141 7 165 427 39 303 1.85e-51 186
Msa0688350 MtrunA17_Chr3g0097061 44.000 125 58 2 538 662 318 430 1.99e-23 104
Msa0688350 MtrunA17_Chr3g0105451 38.567 293 149 8 495 778 9 279 1.71e-49 176
Msa0688350 MtrunA17_Chr2g0312861 38.768 276 136 8 521 785 1 254 5.91e-45 164
Msa0688350 MtrunA17_Chr8g0346961 64.957 117 40 1 592 708 1 116 1.10e-43 153
Msa0688350 MtrunA17_Chr2g0301031 37.643 263 141 7 521 777 1 246 9.04e-41 150
Msa0688350 MtrunA17_Chr3g0105461 34.132 334 169 7 58 380 24 317 2.62e-40 152
Msa0688350 MtrunA17_Chr3g0103061 39.896 193 106 2 99 285 72 260 1.05e-38 144
Msa0688350 MtrunA17_Chr2g0301911 32.295 353 196 10 190 524 33 360 2.00e-38 147
Msa0688350 MtrunA17_Chr2g0312841 38.542 192 100 5 190 378 12 188 2.19e-38 141
Msa0688350 MtrunA17_Chr7g0248851 48.993 149 71 2 631 777 1 146 2.53e-37 137
Msa0688350 MtrunA17_Chr2g0301921 37.727 220 117 5 563 777 1 205 3.79e-35 132
Msa0688350 MtrunA17_Chr4g0071191 39.234 209 108 7 502 706 57 250 4.48e-33 128
Msa0688350 MtrunA17_Chr3g0103071 34.643 280 150 9 295 549 1 272 1.73e-32 127
Msa0688350 MtrunA17_Chr5g0436021 39.634 164 88 3 212 372 31 186 1.72e-29 115
Msa0688350 MtrunA17_Chr2g0301021 28.533 375 155 14 28 389 4 278 2.44e-28 117
Msa0688350 MtrunA17_Chr3g0142981 40.351 171 66 4 215 381 32 170 6.14e-27 108
Msa0688350 MtrunA17_Chr5g0436031 37.349 166 96 4 615 777 20 180 5.59e-26 106
Msa0688350 MtrunA17_Chr8g0376851 35.928 167 98 5 618 779 11 173 8.70e-24 99.0
Msa0688350 MtrunA17_Chr3g0103081 39.597 149 81 5 631 777 1 142 1.64e-21 91.7
Msa0688350 MtrunA17_Chr3g0142971 53.488 86 38 2 505 590 2 85 3.85e-18 80.1
Msa0688350 MtrunA17_Chr5g0398341 47.917 96 48 1 563 658 1 94 9.88e-18 79.3
Msa0688350 MtrunA17_Chr3g0143231 52.273 88 38 3 508 594 5 89 2.64e-17 77.8
Msa0688350 MtrunA17_Chr3g0143221 32.240 183 92 7 604 778 5 163 1.55e-14 72.0
Msa0688350 MtrunA17_Chr4g0035871 35.821 134 78 2 86 211 17 150 1.41e-13 68.9
Msa0688350 MtrunA17_Chr3g0142961 35.156 128 70 5 615 734 13 135 1.37e-12 65.9
Msa0688350 MtrunA17_Chr3g0143021 35.294 102 66 0 99 200 7 108 1.59e-12 64.7
Msa0688350 MtrunA17_Chr5g0439281 29.187 209 119 7 22 213 1 197 2.43e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688350 AT5G67090.1 45.632 767 361 13 35 783 7 735 0.0 644
Msa0688350 AT2G05920.1 41.944 751 381 17 53 778 30 750 0.0 555
Msa0688350 AT5G67360.1 41.548 775 398 19 29 778 11 755 0.0 545
Msa0688350 AT1G04110.1 39.848 788 413 19 30 778 6 771 1.19e-178 532
Msa0688350 AT4G34980.1 39.974 783 411 19 30 782 10 763 8.73e-177 526
Msa0688350 AT5G51750.1 38.175 778 442 15 29 780 13 777 5.52e-170 509
Msa0688350 AT3G14240.1 39.370 762 407 17 53 778 28 770 2.78e-166 500
Msa0688350 AT3G14067.1 37.724 782 430 20 30 777 9 767 7.76e-166 499
Msa0688350 AT1G01900.1 40.690 725 398 13 77 778 57 772 4.16e-162 489
Msa0688350 AT2G04160.1 40.251 718 364 19 101 777 77 770 4.18e-152 463
Msa0688350 AT1G20160.2 38.231 735 389 22 91 783 17 728 3.06e-143 439
Msa0688350 AT1G20160.1 36.671 799 419 25 31 783 10 767 8.40e-143 439
Msa0688350 AT5G59810.1 37.765 707 391 15 101 777 87 774 9.53e-136 421
Msa0688350 AT5G45650.2 36.080 801 413 25 46 778 20 789 3.01e-135 420
Msa0688350 AT5G45650.1 36.080 801 413 25 46 778 20 789 3.01e-135 420
Msa0688350 AT4G10550.1 36.122 789 433 21 29 777 9 766 6.19e-133 414
Msa0688350 AT4G10510.3 35.714 798 438 21 29 786 9 771 8.37e-133 413
Msa0688350 AT4G10510.2 36.915 726 394 18 99 786 1 700 1.37e-132 410
Msa0688350 AT4G10510.4 36.915 726 394 18 99 786 16 715 2.45e-132 410
Msa0688350 AT4G10510.1 36.915 726 394 18 99 786 60 759 4.81e-132 411
Msa0688350 AT4G10550.4 37.348 739 395 19 77 777 2 710 6.00e-131 407
Msa0688350 AT4G10550.2 37.348 739 395 19 77 777 2 710 6.00e-131 407
Msa0688350 AT4G10550.3 37.348 739 395 19 77 777 74 782 1.91e-130 407
Msa0688350 AT1G32960.1 37.238 717 395 18 99 779 70 767 7.09e-127 398
Msa0688350 AT1G32940.4 37.483 715 392 17 99 777 16 711 1.32e-126 395
Msa0688350 AT1G32940.2 37.483 715 392 17 99 777 16 711 1.32e-126 395
Msa0688350 AT5G58830.1 36.100 759 415 23 29 777 7 705 1.52e-126 395
Msa0688350 AT4G10520.1 35.111 769 448 19 29 777 7 744 2.08e-126 396
Msa0688350 AT1G32940.1 37.057 734 401 18 86 777 48 762 2.63e-126 396
Msa0688350 AT1G20150.1 34.625 774 423 20 64 779 24 772 3.72e-126 396
Msa0688350 AT5G59190.1 36.352 751 391 23 59 781 1 692 4.26e-126 393
Msa0688350 AT4G26330.2 36.975 714 402 20 99 777 21 721 2.40e-125 392
Msa0688350 AT4G10540.1 35.873 722 398 16 97 777 66 763 3.15e-125 393
Msa0688350 AT5G59100.1 33.822 751 431 19 53 781 35 741 5.89e-125 392
Msa0688350 AT5G58840.1 34.856 766 429 19 22 777 1 706 6.13e-125 391
Msa0688350 AT3G46840.1 34.733 786 425 22 29 781 8 738 2.91e-124 390
Msa0688350 AT3G46850.1 35.013 774 432 22 29 777 7 734 8.66e-124 389
Msa0688350 AT5G03620.1 36.908 718 379 17 101 777 74 758 1.24e-122 386
Msa0688350 AT1G66220.1 35.552 706 396 15 99 779 75 746 2.64e-122 385
Msa0688350 AT4G26330.1 36.264 728 402 21 99 777 21 735 1.44e-121 383
Msa0688350 AT5G59090.2 33.598 756 422 17 45 777 25 723 1.48e-121 382
Msa0688350 AT1G66210.1 34.456 772 447 18 30 779 18 752 2.73e-121 382
Msa0688350 AT5G59090.1 33.466 756 428 16 45 777 25 728 2.88e-121 382
Msa0688350 AT5G59120.1 34.724 743 397 19 73 777 35 727 6.85e-121 381
Msa0688350 AT4G21650.1 36.316 771 419 22 40 777 29 760 2.41e-119 378
Msa0688350 AT4G00230.1 34.156 770 434 22 41 783 26 749 3.12e-119 377
Msa0688350 AT5G59090.3 33.466 756 426 17 45 777 25 726 3.74e-119 376
Msa0688350 AT5G11940.1 34.900 702 416 15 96 777 72 752 3.28e-118 375
Msa0688350 AT4G21630.1 34.271 782 442 19 30 777 10 753 3.56e-118 374
Msa0688350 AT4G21326.1 35.765 699 402 14 99 777 16 687 1.99e-117 370
Msa0688350 AT5G59130.4 33.894 773 424 25 33 777 12 725 2.12e-116 369
Msa0688350 AT5G59130.3 35.369 704 382 21 98 777 32 686 3.04e-116 367
Msa0688350 AT4G21323.1 35.952 751 413 20 53 775 81 791 7.48e-116 370
Msa0688350 AT5G58820.1 35.020 751 419 23 35 777 11 700 1.38e-115 366
Msa0688350 AT1G32950.1 34.955 781 446 21 30 777 10 761 4.11e-115 367
Msa0688350 AT5G59130.2 34.067 772 414 26 33 777 12 715 5.01e-115 365
Msa0688350 AT4G15040.2 34.986 706 379 16 99 777 33 685 2.47e-114 362
Msa0688350 AT4G15040.1 34.986 706 379 16 99 777 33 685 2.47e-114 362
Msa0688350 AT1G32950.2 36.096 712 405 17 99 777 16 710 3.80e-114 363
Msa0688350 AT5G59130.1 33.765 773 421 26 33 777 12 721 8.52e-114 362
Msa0688350 AT4G21640.1 34.470 792 421 21 20 779 4 729 1.68e-113 361
Msa0688350 AT4G10530.1 32.992 782 434 26 35 777 5 735 2.41e-112 359
Msa0688350 AT5G45640.1 34.899 745 400 21 98 778 29 752 1.43e-109 352
Msa0688350 AT1G32970.1 40.140 573 290 19 236 777 172 722 1.86e-101 330
Msa0688350 AT4G30020.3 34.914 696 346 23 96 713 82 748 2.45e-99 326
Msa0688350 AT4G30020.1 34.914 696 346 23 96 713 82 748 2.45e-99 326
Msa0688350 AT4G30020.4 34.914 696 346 23 96 713 82 748 2.45e-99 326
Msa0688350 AT4G30020.2 34.914 696 346 23 96 713 82 748 2.45e-99 326
Msa0688350 AT2G39850.1 32.984 764 408 28 78 780 48 768 6.24e-95 313
Msa0688350 AT5G58840.3 35.233 579 321 13 22 594 1 531 1.12e-94 306
Msa0688350 AT5G03620.2 37.667 523 280 10 101 596 74 577 4.08e-92 300
Msa0688350 AT1G32940.3 37.163 557 300 14 86 603 48 593 2.58e-90 296
Msa0688350 AT1G30600.1 31.763 743 392 27 79 741 84 791 6.80e-87 293
Msa0688350 AT4G20430.2 30.874 732 426 20 101 778 120 825 1.59e-86 292
Msa0688350 AT4G00230.2 34.746 590 326 18 41 608 26 578 2.78e-86 285
Msa0688350 AT4G20430.3 29.615 753 432 21 101 778 120 849 5.16e-85 288
Msa0688350 AT4G20430.1 29.615 753 432 21 101 778 120 849 5.16e-85 288
Msa0688350 AT5G44530.1 31.586 706 386 22 101 732 107 789 2.33e-84 286
Msa0688350 AT5G44530.2 30.643 731 385 23 101 732 107 814 2.19e-80 276
Msa0688350 AT1G62340.1 29.216 753 441 24 101 780 99 832 1.37e-76 265
Msa0688350 AT1G20160.3 34.470 528 281 15 31 522 10 508 1.47e-76 258
Msa0688350 AT5G58840.2 32.213 506 292 11 22 522 1 460 3.20e-66 228
Msa0688350 AT2G19170.1 38.907 311 171 8 96 391 82 388 1.48e-56 208
Msa0688350 AT2G19170.1 42.291 227 106 8 500 713 533 747 4.81e-36 146
Msa0688350 AT2G19170.2 38.907 311 171 8 96 391 82 388 1.48e-56 208
Msa0688350 AT2G19170.2 42.291 227 106 8 500 713 533 747 4.81e-36 146
Msa0688350 AT5G44530.3 30.938 501 271 16 101 536 107 597 1.78e-52 193
Msa0688350 AT1G32980.1 46.354 192 92 5 559 747 3 186 8.63e-40 145
Msa0688350 AT5G59110.1 36.196 163 94 5 621 777 8 166 5.56e-22 94.4

Find 201 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTGAAGCTTTCACTTTC+TGG 0.067339 4_4:+54221703 None:intergenic
TGATTTAATACTAGCATTAT+TGG 0.130327 4_4:+54219875 None:intergenic
GCCAAACAAGTTGGTGTTTA+AGG 0.131184 4_4:-54219745 Msa0688350:CDS
TTGATAAGTTCTCCATTAAT+TGG 0.165231 4_4:+54220521 None:intergenic
CAATTGTTCTAACCCTTCTT+TGG 0.224091 4_4:-54219928 Msa0688350:CDS
AGGAAACACTTTAAGCTCTA+TGG 0.256212 4_4:+54219570 None:intergenic
GTTTAATAGACAGTGGAATT+TGG 0.258680 4_4:-54221726 Msa0688350:CDS
TTAAATGTCATGCTTGCTTT+TGG 0.275200 4_4:+54220473 None:intergenic
TTTGATAGGTAAATCTCTTA+TGG 0.285445 4_4:+54221840 None:intergenic
GAAGGCCATGTTCCGAAAAT+AGG 0.291086 4_4:+54221778 None:intergenic
ACATTGATGTTCCACTTAAC+AGG 0.292079 4_4:+54220261 None:intergenic
TGGTATTGCAGCTCTGTTGC+TGG 0.293194 4_4:+54220308 None:intergenic
TGACTCCAAGTTGTTAAGTT+TGG 0.295807 4_4:-54219441 Msa0688350:three_prime_UTR
CCAGCTTCGCCTTTAGCTTT+GGG 0.300154 4_4:-54220089 Msa0688350:CDS
ACCAGCTTCGCCTTTAGCTT+TGG 0.303663 4_4:-54220090 Msa0688350:CDS
CCAGATCATTACTTGATATT+CGG 0.314352 4_4:-54219464 Msa0688350:three_prime_UTR
TTCCATCTTGAAGGGATATT+AGG 0.315283 4_4:+54221670 None:intergenic
TCCTTAAACACCAACTTGTT+TGG 0.318323 4_4:+54219744 None:intergenic
TGGAAAGGCAAGTGTGAAAA+TGG 0.319289 4_4:-54221652 Msa0688350:CDS
TCCAGGATCAAGTGCTCTAT+TGG 0.325840 4_4:+54220049 None:intergenic
AGATGTTCTTTCATTATCAT+TGG 0.329610 4_4:-54221171 Msa0688350:CDS
ACATGGCCTTCAACACAATA+TGG 0.331930 4_4:-54221766 Msa0688350:CDS
CACTGGTTTGTCTCTCTATC+CGG 0.333243 4_4:-54220777 Msa0688350:CDS
GACTCCAAGTTGTTAAGTTT+GGG 0.335276 4_4:-54219440 Msa0688350:three_prime_UTR
TAAAAGAAATGCACCCTTGT+TGG 0.342036 4_4:-54220205 Msa0688350:CDS
TGTTGACTTGAGAAGGGTTT+GGG 0.358768 4_4:+54222045 None:intergenic
CACTTGCCTTTCCATCTTGA+AGG 0.368365 4_4:+54221661 None:intergenic
TGAGGTGAGTGTGTTGTGTC+TGG 0.375328 4_4:+54221817 None:intergenic
GAGTATAGATGATCAATATT+TGG 0.385244 4_4:+54222195 None:intergenic
GATGTTCTTTCATTATCATT+GGG 0.385405 4_4:-54221170 Msa0688350:CDS
GTTCCTGGTGCTGTGATGTC+TGG 0.386277 4_4:+54220362 None:intergenic
ATTAAGATCCAAGAGGTAAA+AGG 0.387551 4_4:+54222282 None:intergenic
TCCTACTTCGGCTATGCCTC+TGG 0.392189 4_4:-54221454 Msa0688350:CDS
CAATAAAAGAAGGGTAATTA+AGG 0.394074 4_4:+54219904 None:intergenic
TTGAATATTAATGATTGCTT+AGG 0.396248 4_4:-54219548 Msa0688350:three_prime_UTR
TTCATGGTTATAGTGATGTT+AGG 0.397204 4_4:+54221550 None:intergenic
AATAGGCATGGCAATGGGGC+GGG 0.402003 4_4:+54222508 None:intergenic
GATTAAAATGTTGATTTAGT+TGG 0.402040 4_4:-54222305 Msa0688350:five_prime_UTR
TCTTATGGATGAAATATATC+CGG 0.411390 4_4:+54221855 None:intergenic
ATGTCATGTCCACACGTTGC+AGG 0.412553 4_4:-54220242 Msa0688350:CDS
AGCAACTTCAACCTGTTAAG+TGG 0.414233 4_4:-54220272 Msa0688350:CDS
AATACTAGCATTATTGGAAA+AGG 0.414600 4_4:+54219881 None:intergenic
GAACACTAATCTTAGCTTCA+TGG 0.418136 4_4:-54220343 Msa0688350:CDS
ACACACTCACCTCACTTCAT+TGG 0.420756 4_4:-54221808 Msa0688350:CDS
GAGGATAGAAGGTCCCAAAA+TGG 0.422910 4_4:-54219694 Msa0688350:CDS
TTCAGAGCTTCAAGCTCTAA+AGG 0.422927 4_4:+54221886 None:intergenic
GCAAATGTGGCTATAGCTAC+AGG 0.424372 4_4:+54221119 None:intergenic
CATGTGAATAATATAGTTGT+TGG 0.426658 4_4:+54222083 None:intergenic
GAAGCTAAGATTAGTGTTCC+TGG 0.427932 4_4:+54220347 None:intergenic
GAAGCTCTGAAAACCATTCC+CGG 0.428259 4_4:-54221874 Msa0688350:CDS
CCCAATAGAGCACTTGATCC+TGG 0.431139 4_4:-54220050 Msa0688350:CDS
CCGAATATCAAGTAATGATC+TGG 0.431704 4_4:+54219464 None:intergenic
TGTGTTGTGTCTGGTTTGAT+AGG 0.433260 4_4:+54221826 None:intergenic
TGTACAATAGGCATGGCAAT+GGG 0.433931 4_4:+54222503 None:intergenic
TAAGCAATCATTAATATTCA+AGG 0.434881 4_4:+54219550 None:intergenic
TTTCATGGGGATTTAACACT+TGG 0.438899 4_4:-54220815 Msa0688350:CDS
GGGGATTTAACACTTGGAAA+TGG 0.440284 4_4:-54220809 Msa0688350:CDS
GCATACAAGTTGAGGATAGA+AGG 0.441589 4_4:-54219705 Msa0688350:CDS
CACACTACAACCACTGCTGC+TGG 0.443019 4_4:-54221496 Msa0688350:CDS
AATTTAGTTCTTCAAATTGA+AGG 0.444483 4_4:+54222353 None:intergenic
CTAACATGGAACCCTTCAAT+AGG 0.445506 4_4:+54219774 None:intergenic
ACCAAGAGACAGTGTACAAT+AGG 0.447277 4_4:+54222491 None:intergenic
TGTCATCATAGCCGATCTAA+TGG 0.447945 4_4:+54220172 None:intergenic
GGAAACACTTTAAGCTCTAT+GGG 0.448985 4_4:+54219571 None:intergenic
GACAGAATAAAAGTTGTTGC+GGG 0.452947 4_4:-54220617 Msa0688350:CDS
CCAGGATCAAGTGCTCTATT+GGG 0.455478 4_4:+54220050 None:intergenic
TCGCCTTTAGCTTTGGGAGC+CGG 0.456562 4_4:-54220083 Msa0688350:CDS
TATGTCACGTGTGGAGTTCA+TGG 0.457154 4_4:+54221534 None:intergenic
TTTCCACAACACCTTGTACA+TGG 0.458364 4_4:+54221253 None:intergenic
TCAAATTATCACATGAGCTC+AGG 0.458858 4_4:+54220720 None:intergenic
TAACTCGACTTTGGTTGCTT+AGG 0.459345 4_4:-54219361 Msa0688350:three_prime_UTR
GAGGTGAAGGATTATGATAA+AGG 0.463563 4_4:+54222134 None:intergenic
CGTTGGTTCCTCTCCAACAT+TGG 0.463759 4_4:+54219818 None:intergenic
TGCTACTCAAGTGGATAACT+TGG 0.465885 4_4:-54220639 Msa0688350:CDS
ATTGTCAAGTAGTGAGGAAA+GGG 0.467867 4_4:+54222005 None:intergenic
CCAACTTTGTTGACTTGAGA+AGG 0.468731 4_4:+54222038 None:intergenic
TATTAATGATTGCTTAGGTT+AGG 0.468949 4_4:-54219543 Msa0688350:three_prime_UTR
TTGTTGACTTGAGAAGGGTT+TGG 0.470115 4_4:+54222044 None:intergenic
TTGGAAAAGGCAATAAAAGA+AGG 0.472023 4_4:+54219894 None:intergenic
ATAGCCGATCTAATGGCTGC+TGG 0.472411 4_4:+54220179 None:intergenic
GAGAGACAAACCAGTGACTT+TGG 0.475671 4_4:+54220784 None:intergenic
CCCAAAGCTAAAGGCGAAGC+TGG 0.477490 4_4:+54220089 None:intergenic
CAAAGAACAGTAACCAATGT+TGG 0.481002 4_4:-54219831 Msa0688350:CDS
CCTGGACTTGTTTATGATGC+AGG 0.481037 4_4:-54220032 Msa0688350:CDS
ACTGGTTTGTCTCTCTATCC+GGG 0.481363 4_4:-54220776 Msa0688350:CDS
ACAATGGATCGTGAATTTCA+TGG 0.481858 4_4:-54220830 Msa0688350:CDS
CCACTTGAGTAGCAAGTGTT+CGG 0.482540 4_4:+54220648 None:intergenic
ATGTCTGGTTTCAATACAAA+TGG 0.482788 4_4:+54220377 None:intergenic
TAACTATCCACACTTGGTGC+TGG 0.482946 4_4:+54220428 None:intergenic
TACAAGGTGTTGTGGAAAGA+AGG 0.492211 4_4:-54221248 Msa0688350:CDS
AGTTGCTGAAGAGACTGTTC+TGG 0.493083 4_4:+54220288 None:intergenic
TTTCTCCATGGCTGCAAATG+TGG 0.496242 4_4:+54221106 None:intergenic
AGTAATATTGTCAAGTAGTG+AGG 0.501247 4_4:+54221999 None:intergenic
TAGATGATCAATATTTGGTA+TGG 0.501633 4_4:+54222200 None:intergenic
GGAAATGGAGCCAAAGTCAC+TGG 0.504040 4_4:-54220794 Msa0688350:CDS
AATTAATGGAGAACTTATCA+AGG 0.504175 4_4:-54220519 Msa0688350:CDS
TTGTGGAGAGTTTCAAGCAC+TGG 0.505059 4_4:+54221047 None:intergenic
GCCAACATTACACCTATTGA+AGG 0.506828 4_4:-54219786 Msa0688350:CDS
AATCTCTATTTAAGCCTCCA+TGG 0.506949 4_4:-54222250 Msa0688350:exon
CAATGGATCGTGAATTTCAT+GGG 0.508806 4_4:-54220829 Msa0688350:CDS
CCTGCATCATAAACAAGTCC+AGG 0.510762 4_4:+54220032 None:intergenic
GGGTAATTAAGGTCCAAAGA+AGG 0.511365 4_4:+54219915 None:intergenic
CCCTTCAATAGGTGTAATGT+TGG 0.512122 4_4:+54219785 None:intergenic
TTGAGGCTAGTCACCACAAT+GGG 0.512323 4_4:+54219609 None:intergenic
ACCTACACTAATGTCATGAA+TGG 0.513006 4_4:-54221928 Msa0688350:CDS
TATACCCAAACTTAACAACT+TGG 0.515428 4_4:+54219436 None:intergenic
CTTATGGATGAAATATATCC+GGG 0.515810 4_4:+54221856 None:intergenic
ACTTGAGAAGGGTTTGGGCA+TGG 0.519588 4_4:+54222050 None:intergenic
GCCTATTGTACACTGTCTCT+TGG 0.520767 4_4:-54222492 Msa0688350:five_prime_UTR
AACTTTACTTCCAGCAGCAG+TGG 0.521509 4_4:+54221486 None:intergenic
CACACAATGTAGATGAAAAG+AGG 0.523103 4_4:+54222115 None:intergenic
GGAGCTCGATTCTTTAACAA+AGG 0.531585 4_4:-54221589 Msa0688350:CDS
CCTTCTCAAGTCAACAAAGT+TGG 0.539717 4_4:-54222038 Msa0688350:CDS
TTCTTCAGGCAAGGTCCCAA+TGG 0.539934 4_4:-54220747 Msa0688350:CDS
GGATGAAATATATCCGGGAA+TGG 0.540534 4_4:+54221861 None:intergenic
ATGGCTGCTGGGCTCCAACA+AGG 0.540754 4_4:+54220191 None:intergenic
CTCATCACAGACATTGGTAA+TGG 0.546640 4_4:-54220119 Msa0688350:CDS
TATAGCCACATTTGCAGCCA+TGG 0.551323 4_4:-54221111 Msa0688350:CDS
AAAAGGTGGCATACAAGTTG+AGG 0.554078 4_4:-54219713 Msa0688350:CDS
CCGAACACTTGCTACTCAAG+TGG 0.554379 4_4:-54220648 Msa0688350:CDS
ACTTGCCTTTCCATCTTGAA+GGG 0.556410 4_4:+54221662 None:intergenic
AAACCAGACATCACAGCACC+AGG 0.556877 4_4:-54220365 Msa0688350:CDS
TGGCTGCTGGGCTCCAACAA+GGG 0.558849 4_4:+54220192 None:intergenic
AACTAGACATTAAAAGTGAA+AGG 0.560769 4_4:+54219391 None:intergenic
TAATGCTAGTATTAAATCAA+AGG 0.561729 4_4:-54219871 Msa0688350:CDS
TATTGTCAAGTAGTGAGGAA+AGG 0.561818 4_4:+54222004 None:intergenic
GTTGAGGGTGCATCCTACTT+CGG 0.562979 4_4:-54221466 Msa0688350:CDS
TGATTGCTTAGGTTAGGATG+AGG 0.563468 4_4:-54219537 Msa0688350:three_prime_UTR
ATGAGCTCAGGAAAACCATT+GGG 0.563597 4_4:+54220732 None:intergenic
GTGTACAATAGGCATGGCAA+TGG 0.564155 4_4:+54222502 None:intergenic
TGGAAAAGGCAATAAAAGAA+GGG 0.565522 4_4:+54219895 None:intergenic
TCTATTGGGATTGATATGTC+CGG 0.566787 4_4:+54220064 None:intergenic
TGCCTAATATCCCTTCAAGA+TGG 0.567160 4_4:-54221672 Msa0688350:CDS
CAATAGGCATGGCAATGGGG+CGG 0.567926 4_4:+54222507 None:intergenic
GGACAGAATAAAAGTTGTTG+CGG 0.568482 4_4:-54220618 Msa0688350:CDS
TTGCCTGAAGAAAAGTTCCC+CGG 0.569584 4_4:+54220758 None:intergenic
GGTAATTAAGGTCCAAAGAA+GGG 0.570305 4_4:+54219916 None:intergenic
GTGGATAGTTATAGCTCAAG+AGG 0.570426 4_4:-54220416 Msa0688350:CDS
CATGAGCTCAGGAAAACCAT+TGG 0.572333 4_4:+54220731 None:intergenic
TAGCCGATCTAATGGCTGCT+GGG 0.573964 4_4:+54220180 None:intergenic
CAACTTTGTTGACTTGAGAA+GGG 0.574875 4_4:+54222039 None:intergenic
TAGGTAATAACAGTTGCTGC+TGG 0.574960 4_4:-54220854 Msa0688350:CDS
AAAGAACTCATCACAGACAT+TGG 0.579567 4_4:-54220125 Msa0688350:CDS
ATCATTGGTTTAATAGACAG+TGG 0.581569 4_4:-54221733 Msa0688350:CDS
ATGTAGATGAAAAGAGGTGA+AGG 0.582077 4_4:+54222121 None:intergenic
TACAAAACCAGCACCAAGTG+TGG 0.583888 4_4:-54220435 Msa0688350:CDS
AAGTAATGATCTGGTAATGA+CGG 0.584894 4_4:+54219473 None:intergenic
TGTTTGGCACAACACTAACA+TGG 0.585342 4_4:+54219760 None:intergenic
ATGTTGGCTACGTAGATCGT+TGG 0.587029 4_4:+54219801 None:intergenic
TTACCCATGGTGTTCCATTG+TGG 0.588428 4_4:+54221030 None:intergenic
CAAGCAAAGTGTTGAAACCA+TGG 0.588523 4_4:+54222233 None:intergenic
TGCTCATGTATCCATGTACA+AGG 0.589509 4_4:-54221264 Msa0688350:CDS
TGTCCGGCTCCCAAAGCTAA+AGG 0.592001 4_4:+54220080 None:intergenic
TTTCATATCAAATAGTTCTG+AGG 0.593073 4_4:-54220591 Msa0688350:CDS
AATATCCCTTCAAGATGGAA+AGG 0.594488 4_4:-54221667 Msa0688350:CDS
GCTGCTGGAAGTAAAGTTGA+GGG 0.598290 4_4:-54221481 Msa0688350:CDS
GAGCCCAGCAGCCATTAGAT+CGG 0.599696 4_4:-54220183 Msa0688350:CDS
AACAGTTGCTGCTGGCACAA+TGG 0.600200 4_4:-54220846 Msa0688350:CDS
AACAGTAACCAATGTTGGAG+AGG 0.601299 4_4:-54219826 Msa0688350:CDS
TATCCATGTACAAGGTGTTG+TGG 0.603560 4_4:-54221256 Msa0688350:CDS
TATGCCTCTGGATCAGCCAT+AGG 0.605864 4_4:-54221442 Msa0688350:intron
GAGCTATAACTATCCACACT+TGG 0.608978 4_4:+54220422 None:intergenic
ACAAATGGACAACTATGTGA+TGG 0.610446 4_4:+54220392 None:intergenic
ATGTTCCGAAAATAGGATTG+AGG 0.612999 4_4:+54221785 None:intergenic
TGCTGCTGGAAGTAAAGTTG+AGG 0.614714 4_4:-54221482 Msa0688350:CDS
GTTAAAAGATGATCTCGTGA+TGG 0.616429 4_4:+54219950 None:intergenic
CCAACATTACACCTATTGAA+GGG 0.618531 4_4:-54219785 Msa0688350:CDS
ACACGTGACATAGACGGTCA+TGG 0.628186 4_4:-54221523 Msa0688350:CDS
CAAATGTGGCTATAGCTACA+GGG 0.628730 4_4:+54221120 None:intergenic
CTGGTTTGTCTCTCTATCCG+GGG 0.630663 4_4:-54220775 Msa0688350:CDS
GAGACAGTGTACAATAGGCA+TGG 0.632437 4_4:+54222496 None:intergenic
GTCAAGTAGTGAGGAAAGGG+TGG 0.633247 4_4:+54222008 None:intergenic
GATACCTATGGCTGATCCAG+AGG 0.634269 4_4:+54221438 None:intergenic
TCCAGAGGCATAGCCGAAGT+AGG 0.635263 4_4:+54221453 None:intergenic
AACTCCACACGTGACATAGA+CGG 0.635875 4_4:-54221529 Msa0688350:CDS
TCTCCACAATGGAACACCAT+GGG 0.638196 4_4:-54221033 Msa0688350:intron
ATGAATATGTGAAGCCATGG+TGG 0.645111 4_4:+54222173 None:intergenic
GCTACAGGGTCTTCATACAA+AGG 0.645706 4_4:+54221134 None:intergenic
GTGATGAATATGTGAAGCCA+TGG 0.645739 4_4:+54222170 None:intergenic
CAATGTTAGAAGTCCCATTG+TGG 0.651731 4_4:-54219622 Msa0688350:CDS
TAGTGTTGTGCCAAACAAGT+TGG 0.651815 4_4:-54219754 Msa0688350:CDS
GCTGCTACACCTGCAACGTG+TGG 0.653610 4_4:+54220233 None:intergenic
TCTACATCTGCAGGGAACAG+AGG 0.655917 4_4:-54221071 Msa0688350:CDS
GAAACACTTTAAGCTCTATG+GGG 0.658815 4_4:+54219572 None:intergenic
ACCATTCATGACATTAGTGT+AGG 0.661281 4_4:+54221927 None:intergenic
GTGCTTGAAACTCTCCACAA+TGG 0.662351 4_4:-54221044 Msa0688350:CDS
AATGGATCGTGAATTTCATG+GGG 0.664232 4_4:-54220828 Msa0688350:CDS
ATTGATAGTGCAATATCAGA+TGG 0.667169 4_4:-54221197 Msa0688350:CDS
GGGGTGTTAATTCTGAGTTG+AGG 0.668165 4_4:+54219592 None:intergenic
CTTCACTCAGAAGAATATCA+CGG 0.668501 4_4:-54219973 Msa0688350:CDS
GGATTGAGGCCAATGAAGTG+AGG 0.671955 4_4:+54221799 None:intergenic
TGAGTTGATTAAGATCCAAG+AGG 0.672746 4_4:+54222275 None:intergenic
AAACACTTTAAGCTCTATGG+GGG 0.675132 4_4:+54219573 None:intergenic
TACATGGATACATGAGCATG+TGG 0.676320 4_4:+54221269 None:intergenic
CTCTCCACAATGGAACACCA+TGG 0.677964 4_4:-54221034 Msa0688350:CDS
ATGACCGTCTATGTCACGTG+TGG 0.690392 4_4:+54221525 None:intergenic
CAGAGCGAGAAACAAGATCG+TGG 0.709086 4_4:-54220687 Msa0688350:CDS
GTTGAGGCTAGTCACCACAA+TGG 0.709647 4_4:+54219608 None:intergenic
TGATCATCTATACTCCACCA+TGG 0.714073 4_4:-54222187 Msa0688350:CDS
GTACAATAGGCATGGCAATG+GGG 0.719416 4_4:+54222504 None:intergenic
GCAAAGTGTTGAAACCATGG+AGG 0.744878 4_4:+54222236 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTGTTAATTTTGAAATAA+CGG - chr4_4:54219395-54219414 Msa0688350:three_prime_UTR 15.0%
!! CCTATTATTAGATATAAATT+TGG + chr4_4:54220501-54220520 None:intergenic 15.0%
!! CCAAATTTATATCTAATAAT+AGG - chr4_4:54220498-54220517 Msa0688350:CDS 15.0%
!!! ATTTTTTTGAATCCAATTAA+TGG - chr4_4:54221264-54221283 Msa0688350:CDS 15.0%
!!! ACATTTAATAAAACTGTTTT+AGG - chr4_4:54221339-54221358 Msa0688350:intron 15.0%
!!! AATTTAGTTCTTCAAATTGA+AGG + chr4_4:54219447-54219466 None:intergenic 20.0%
!!! ATTTTGTAAGTCAAATTTTG+AGG - chr4_4:54219470-54219489 Msa0688350:three_prime_UTR 20.0%
!!! GATTAAAATGTTGATTTAGT+TGG - chr4_4:54219492-54219511 Msa0688350:three_prime_UTR 20.0%
!!! TGAGTTTTGAAGAAAAAATA+TGG + chr4_4:54219844-54219863 None:intergenic 20.0%
!! TTTATATCTAATAATAGGCA+TGG - chr4_4:54220503-54220522 Msa0688350:CDS 20.0%
!! GTTTATACATAAGAAATGAT+TGG - chr4_4:54220860-54220879 Msa0688350:intron 20.0%
!! TATTACCTATTAGTGATAAA+GGG + chr4_4:54220932-54220951 None:intergenic 20.0%
!! TTATTACCTATTAGTGATAA+AGG + chr4_4:54220933-54220952 None:intergenic 20.0%
!! ATTGGATTCAAAAAAATAGA+TGG + chr4_4:54221261-54221280 None:intergenic 20.0%
!! TGATTTAATACTAGCATTAT+TGG + chr4_4:54221925-54221944 None:intergenic 20.0%
!! TAATGCTAGTATTAAATCAA+AGG - chr4_4:54221926-54221945 Msa0688350:CDS 20.0%
!!! AGCAAAATAAAGTAGTTTTT+GGG - chr4_4:54222126-54222145 Msa0688350:CDS 20.0%
!! TAAGCAATCATTAATATTCA+AGG + chr4_4:54222250-54222269 None:intergenic 20.0%
!! TTGAATATTAATGATTGCTT+AGG - chr4_4:54222249-54222268 Msa0688350:exon 20.0%
!! TATTGAGAAAAAAGAAATCA+AGG + chr4_4:54222293-54222312 None:intergenic 20.0%
!!! CTGTATTTTTTAAATTCGTA+CGG + chr4_4:54222480-54222499 None:intergenic 20.0%
!! ACGAATTTAAAAAATACAGT+TGG - chr4_4:54222481-54222500 Msa0688350:five_prime_UTR 20.0%
!! AATTTAAAAAATACAGTTGG+AGG - chr4_4:54222484-54222503 Msa0688350:five_prime_UTR 20.0%
!! ATTTAAAAAATACAGTTGGA+GGG - chr4_4:54222485-54222504 Msa0688350:five_prime_UTR 20.0%
!!! AAAATTGTGTGTTTTTTTGC+TGG - chr4_4:54219354-54219373 Msa0688350:three_prime_UTR 25.0%
! TAGATGATCAATATTTGGTA+TGG + chr4_4:54219600-54219619 None:intergenic 25.0%
! GAGTATAGATGATCAATATT+TGG + chr4_4:54219605-54219624 None:intergenic 25.0%
! CATGTGAATAATATAGTTGT+TGG + chr4_4:54219717-54219736 None:intergenic 25.0%
! AAGAAAAAATATGGTTCAAC+TGG + chr4_4:54219835-54219854 None:intergenic 25.0%
! TCTTATGGATGAAATATATC+CGG + chr4_4:54219945-54219964 None:intergenic 25.0%
! TTTGATAGGTAAATCTCTTA+TGG + chr4_4:54219960-54219979 None:intergenic 25.0%
!!! TTTTTTCCATATTGTGTTGA+AGG + chr4_4:54220040-54220059 None:intergenic 25.0%
!!! AGATATTTTAGTGATACCTA+TGG + chr4_4:54220374-54220393 None:intergenic 25.0%
! AGATGTTCTTTCATTATCAT+TGG - chr4_4:54220626-54220645 Msa0688350:CDS 25.0%
! GATGTTCTTTCATTATCATT+GGG - chr4_4:54220627-54220646 Msa0688350:CDS 25.0%
!! TTTCATATCAAATAGTTCTG+AGG - chr4_4:54221206-54221225 Msa0688350:CDS 25.0%
! TTGATAAGTTCTCCATTAAT+TGG + chr4_4:54221279-54221298 None:intergenic 25.0%
! AATTAATGGAGAACTTATCA+AGG - chr4_4:54221278-54221297 Msa0688350:CDS 25.0%
! CAATAAAAGAAGGGTAATTA+AGG + chr4_4:54221896-54221915 None:intergenic 25.0%
! AATACTAGCATTATTGGAAA+AGG + chr4_4:54221919-54221938 None:intergenic 25.0%
! GTTTAAGGAGAAAAATGAAA+AGG - chr4_4:54222067-54222086 Msa0688350:CDS 25.0%
!!! ACTTTATTTTGCTCCATTTT+GGG + chr4_4:54222119-54222138 None:intergenic 25.0%
!!! TACTTTATTTTGCTCCATTT+TGG + chr4_4:54222120-54222139 None:intergenic 25.0%
!! GAGCAAAATAAAGTAGTTTT+TGG - chr4_4:54222125-54222144 Msa0688350:CDS 25.0%
! TATTAATGATTGCTTAGGTT+AGG - chr4_4:54222254-54222273 Msa0688350:five_prime_UTR 25.0%
! AGAAAAAAGAAATCAAGGAT+TGG + chr4_4:54222288-54222307 None:intergenic 25.0%
! AACTAGACATTAAAAGTGAA+AGG + chr4_4:54222409-54222428 None:intergenic 25.0%
!! TTTTAAATGTAACTCGACTT+TGG - chr4_4:54222427-54222446 Msa0688350:five_prime_UTR 25.0%
! TTTAAAAAATACAGTTGGAG+GGG - chr4_4:54222486-54222505 Msa0688350:five_prime_UTR 25.0%
ATTAAGATCCAAGAGGTAAA+AGG + chr4_4:54219518-54219537 None:intergenic 30.0%
AGTAATATTGTCAAGTAGTG+AGG + chr4_4:54219801-54219820 None:intergenic 30.0%
CTTATGGATGAAATATATCC+GGG + chr4_4:54219944-54219963 None:intergenic 30.0%
TATGGAAAAAACGTCATCAT+TGG - chr4_4:54220049-54220068 Msa0688350:CDS 30.0%
!! ATCATTGGTTTAATAGACAG+TGG - chr4_4:54220064-54220083 Msa0688350:CDS 30.0%
GTTTAATAGACAGTGGAATT+TGG - chr4_4:54220071-54220090 Msa0688350:CDS 30.0%
!!! AGTTTTTTGTTGCACAATGA+CGG + chr4_4:54220184-54220203 None:intergenic 30.0%
TTGTGCAACAAAAAACTCAT+AGG - chr4_4:54220187-54220206 Msa0688350:CDS 30.0%
TTCATGGTTATAGTGATGTT+AGG + chr4_4:54220250-54220269 None:intergenic 30.0%
!! ATTGATAGTGCAATATCAGA+TGG - chr4_4:54220600-54220619 Msa0688350:CDS 30.0%
! CACAAAAATGTTTTTCTCCA+TGG + chr4_4:54220706-54220725 None:intergenic 30.0%
CTATCTACTTCACTTTCATA+TGG + chr4_4:54220887-54220906 None:intergenic 30.0%
! TTAAATGTCATGCTTGCTTT+TGG + chr4_4:54221327-54221346 None:intergenic 30.0%
! ATGTCTGGTTTCAATACAAA+TGG + chr4_4:54221423-54221442 None:intergenic 30.0%
TGGAAAAGGCAATAAAAGAA+GGG + chr4_4:54221905-54221924 None:intergenic 30.0%
TTGGAAAAGGCAATAAAAGA+AGG + chr4_4:54221906-54221925 None:intergenic 30.0%
TAAGGAGAAAAATGAAAAGG+TGG - chr4_4:54222070-54222089 Msa0688350:CDS 30.0%
! AAGTAATGATCTGGTAATGA+CGG + chr4_4:54222327-54222346 None:intergenic 30.0%
CCAGATCATTACTTGATATT+CGG - chr4_4:54222333-54222352 Msa0688350:five_prime_UTR 30.0%
TATACCCAAACTTAACAACT+TGG + chr4_4:54222364-54222383 None:intergenic 30.0%
!! TGAGTTGATTAAGATCCAAG+AGG + chr4_4:54219525-54219544 None:intergenic 35.0%
AATCTCTATTTAAGCCTCCA+TGG - chr4_4:54219547-54219566 Msa0688350:three_prime_UTR 35.0%
GAGGTGAAGGATTATGATAA+AGG + chr4_4:54219666-54219685 None:intergenic 35.0%
ATGTAGATGAAAAGAGGTGA+AGG + chr4_4:54219679-54219698 None:intergenic 35.0%
CACACAATGTAGATGAAAAG+AGG + chr4_4:54219685-54219704 None:intergenic 35.0%
!! CAACTTTGTTGACTTGAGAA+GGG + chr4_4:54219761-54219780 None:intergenic 35.0%
ATTGTCAAGTAGTGAGGAAA+GGG + chr4_4:54219795-54219814 None:intergenic 35.0%
TATTGTCAAGTAGTGAGGAA+AGG + chr4_4:54219796-54219815 None:intergenic 35.0%
ACCTACACTAATGTCATGAA+TGG - chr4_4:54219869-54219888 Msa0688350:CDS 35.0%
ACCATTCATGACATTAGTGT+AGG + chr4_4:54219873-54219892 None:intergenic 35.0%
!! ATTGGCCTCAATCCTATTTT+CGG - chr4_4:54220007-54220026 Msa0688350:CDS 35.0%
ATGTTCCGAAAATAGGATTG+AGG + chr4_4:54220015-54220034 None:intergenic 35.0%
! TCAATCCTATTTTCGGAACA+TGG - chr4_4:54220014-54220033 Msa0688350:CDS 35.0%
!! TCTTTGAAGCTTTCACTTTC+TGG + chr4_4:54220097-54220116 None:intergenic 35.0%
TTCCATCTTGAAGGGATATT+AGG + chr4_4:54220130-54220149 None:intergenic 35.0%
AATATCCCTTCAAGATGGAA+AGG - chr4_4:54220130-54220149 Msa0688350:CDS 35.0%
!! ATTATCATTGGGTTTTGACG+AGG - chr4_4:54220638-54220657 Msa0688350:CDS 35.0%
! ATTTTTGTGTCTACATCTGC+AGG - chr4_4:54220717-54220736 Msa0688350:CDS 35.0%
! TTTTTGTGTCTACATCTGCA+GGG - chr4_4:54220718-54220737 Msa0688350:CDS 35.0%
GCAGTAAGTAATATTACCCA+TGG + chr4_4:54220783-54220802 None:intergenic 35.0%
ACTCACCCTTTATCACTAAT+AGG - chr4_4:54220924-54220943 Msa0688350:intron 35.0%
ACAATGGATCGTGAATTTCA+TGG - chr4_4:54220967-54220986 Msa0688350:intron 35.0%
CAATGGATCGTGAATTTCAT+GGG - chr4_4:54220968-54220987 Msa0688350:intron 35.0%
AATGGATCGTGAATTTCATG+GGG - chr4_4:54220969-54220988 Msa0688350:intron 35.0%
TTTCATGGGGATTTAACACT+TGG - chr4_4:54220982-54221001 Msa0688350:intron 35.0%
TCAAATTATCACATGAGCTC+AGG + chr4_4:54221080-54221099 None:intergenic 35.0%
GGACAGAATAAAAGTTGTTG+CGG - chr4_4:54221179-54221198 Msa0688350:CDS 35.0%
GACAGAATAAAAGTTGTTGC+GGG - chr4_4:54221180-54221199 Msa0688350:CDS 35.0%
ACAAATGGACAACTATGTGA+TGG + chr4_4:54221408-54221427 None:intergenic 35.0%
GAACACTAATCTTAGCTTCA+TGG - chr4_4:54221454-54221473 Msa0688350:CDS 35.0%
ACATTGATGTTCCACTTAAC+AGG + chr4_4:54221539-54221558 None:intergenic 35.0%
TAAAAGAAATGCACCCTTGT+TGG - chr4_4:54221592-54221611 Msa0688350:CDS 35.0%
AAAGAACTCATCACAGACAT+TGG - chr4_4:54221672-54221691 Msa0688350:CDS 35.0%
TCTATTGGGATTGATATGTC+CGG + chr4_4:54221736-54221755 None:intergenic 35.0%
CTTCACTCAGAAGAATATCA+CGG - chr4_4:54221824-54221843 Msa0688350:CDS 35.0%
GTTAAAAGATGATCTCGTGA+TGG + chr4_4:54221850-54221869 None:intergenic 35.0%
CAATTGTTCTAACCCTTCTT+TGG - chr4_4:54221869-54221888 Msa0688350:CDS 35.0%
GGTAATTAAGGTCCAAAGAA+GGG + chr4_4:54221884-54221903 None:intergenic 35.0%
CAAAGAACAGTAACCAATGT+TGG - chr4_4:54221966-54221985 Msa0688350:CDS 35.0%
CCAACATTACACCTATTGAA+GGG - chr4_4:54222012-54222031 Msa0688350:CDS 35.0%
! TCCTTAAACACCAACTTGTT+TGG + chr4_4:54222056-54222075 None:intergenic 35.0%
!!! TAGTTTTTGGGTATCTCACT+TGG - chr4_4:54222138-54222157 Msa0688350:CDS 35.0%
AAACACTTTAAGCTCTATGG+GGG + chr4_4:54222227-54222246 None:intergenic 35.0%
GAAACACTTTAAGCTCTATG+GGG + chr4_4:54222228-54222247 None:intergenic 35.0%
GGAAACACTTTAAGCTCTAT+GGG + chr4_4:54222229-54222248 None:intergenic 35.0%
AGGAAACACTTTAAGCTCTA+TGG + chr4_4:54222230-54222249 None:intergenic 35.0%
CCGAATATCAAGTAATGATC+TGG + chr4_4:54222336-54222355 None:intergenic 35.0%
TGACTCCAAGTTGTTAAGTT+TGG - chr4_4:54222356-54222375 Msa0688350:five_prime_UTR 35.0%
GACTCCAAGTTGTTAAGTTT+GGG - chr4_4:54222357-54222376 Msa0688350:five_prime_UTR 35.0%
TGTACAATAGGCATGGCAAT+GGG + chr4_4:54219297-54219316 None:intergenic 40.0%
ACCAAGAGACAGTGTACAAT+AGG + chr4_4:54219309-54219328 None:intergenic 40.0%
!!! TTAGTTGGCCTTTTACCTCT+TGG - chr4_4:54219507-54219526 Msa0688350:three_prime_UTR 40.0%
!! CAAGCAAAGTGTTGAAACCA+TGG + chr4_4:54219567-54219586 None:intergenic 40.0%
TGATCATCTATACTCCACCA+TGG - chr4_4:54219610-54219629 Msa0688350:CDS 40.0%
ATGAATATGTGAAGCCATGG+TGG + chr4_4:54219627-54219646 None:intergenic 40.0%
GTGATGAATATGTGAAGCCA+TGG + chr4_4:54219630-54219649 None:intergenic 40.0%
!! TGTTGACTTGAGAAGGGTTT+GGG + chr4_4:54219755-54219774 None:intergenic 40.0%
!! TTGTTGACTTGAGAAGGGTT+TGG + chr4_4:54219756-54219775 None:intergenic 40.0%
!! CCAACTTTGTTGACTTGAGA+AGG + chr4_4:54219762-54219781 None:intergenic 40.0%
CCTTCTCAAGTCAACAAAGT+TGG - chr4_4:54219759-54219778 Msa0688350:CDS 40.0%
! TTCAGAGCTTCAAGCTCTAA+AGG + chr4_4:54219914-54219933 None:intergenic 40.0%
GGATGAAATATATCCGGGAA+TGG + chr4_4:54219939-54219958 None:intergenic 40.0%
! TGTGTTGTGTCTGGTTTGAT+AGG + chr4_4:54219974-54219993 None:intergenic 40.0%
ACATGGCCTTCAACACAATA+TGG - chr4_4:54220031-54220050 Msa0688350:CDS 40.0%
TGCCTAATATCCCTTCAAGA+TGG - chr4_4:54220125-54220144 Msa0688350:CDS 40.0%
ACTTGCCTTTCCATCTTGAA+GGG + chr4_4:54220138-54220157 None:intergenic 40.0%
TGGAAAGGCAAGTGTGAAAA+TGG - chr4_4:54220145-54220164 Msa0688350:CDS 40.0%
GGAGCTCGATTCTTTAACAA+AGG - chr4_4:54220208-54220227 Msa0688350:CDS 40.0%
TACATGGATACATGAGCATG+TGG + chr4_4:54220531-54220550 None:intergenic 40.0%
TGCTCATGTATCCATGTACA+AGG - chr4_4:54220533-54220552 Msa0688350:CDS 40.0%
!! TATCCATGTACAAGGTGTTG+TGG - chr4_4:54220541-54220560 Msa0688350:CDS 40.0%
TTTCCACAACACCTTGTACA+TGG + chr4_4:54220547-54220566 None:intergenic 40.0%
!! TACAAGGTGTTGTGGAAAGA+AGG - chr4_4:54220549-54220568 Msa0688350:CDS 40.0%
CAAATGTGGCTATAGCTACA+GGG + chr4_4:54220680-54220699 None:intergenic 40.0%
TAGGTAATAACAGTTGCTGC+TGG - chr4_4:54220943-54220962 Msa0688350:intron 40.0%
GGGGATTTAACACTTGGAAA+TGG - chr4_4:54220988-54221007 Msa0688350:intron 40.0%
ATGAGCTCAGGAAAACCATT+GGG + chr4_4:54221068-54221087 None:intergenic 40.0%
TGCTACTCAAGTGGATAACT+TGG - chr4_4:54221158-54221177 Msa0688350:CDS 40.0%
GAGCTATAACTATCCACACT+TGG + chr4_4:54221378-54221397 None:intergenic 40.0%
GTGGATAGTTATAGCTCAAG+AGG - chr4_4:54221381-54221400 Msa0688350:intron 40.0%
GAAGCTAAGATTAGTGTTCC+TGG + chr4_4:54221453-54221472 None:intergenic 40.0%
! TCTGTTGCTGGAACATTTTG+AGG + chr4_4:54221480-54221499 None:intergenic 40.0%
AGCAACTTCAACCTGTTAAG+TGG - chr4_4:54221525-54221544 Msa0688350:CDS 40.0%
TGTCATCATAGCCGATCTAA+TGG + chr4_4:54221628-54221647 None:intergenic 40.0%
CTCATCACAGACATTGGTAA+TGG - chr4_4:54221678-54221697 Msa0688350:CDS 40.0%
GGGTAATTAAGGTCCAAAGA+AGG + chr4_4:54221885-54221904 None:intergenic 40.0%
AACAGTAACCAATGTTGGAG+AGG - chr4_4:54221971-54221990 Msa0688350:CDS 40.0%
GCCAACATTACACCTATTGA+AGG - chr4_4:54222011-54222030 Msa0688350:CDS 40.0%
CCCTTCAATAGGTGTAATGT+TGG + chr4_4:54222015-54222034 None:intergenic 40.0%
CTAACATGGAACCCTTCAAT+AGG + chr4_4:54222026-54222045 None:intergenic 40.0%
TGTTTGGCACAACACTAACA+TGG + chr4_4:54222040-54222059 None:intergenic 40.0%
TAGTGTTGTGCCAAACAAGT+TGG - chr4_4:54222043-54222062 Msa0688350:CDS 40.0%
!! GCCAAACAAGTTGGTGTTTA+AGG - chr4_4:54222052-54222071 Msa0688350:CDS 40.0%
AAAAGGTGGCATACAAGTTG+AGG - chr4_4:54222084-54222103 Msa0688350:CDS 40.0%
! GCATACAAGTTGAGGATAGA+AGG - chr4_4:54222092-54222111 Msa0688350:CDS 40.0%
CAATGTTAGAAGTCCCATTG+TGG - chr4_4:54222175-54222194 Msa0688350:CDS 40.0%
TGATTGCTTAGGTTAGGATG+AGG - chr4_4:54222260-54222279 Msa0688350:five_prime_UTR 40.0%
TAACTCGACTTTGGTTGCTT+AGG - chr4_4:54222436-54222455 Msa0688350:five_prime_UTR 40.0%
GTACAATAGGCATGGCAATG+GGG + chr4_4:54219296-54219315 None:intergenic 45.0%
GTGTACAATAGGCATGGCAA+TGG + chr4_4:54219298-54219317 None:intergenic 45.0%
GAGACAGTGTACAATAGGCA+TGG + chr4_4:54219304-54219323 None:intergenic 45.0%
GCCTATTGTACACTGTCTCT+TGG - chr4_4:54219305-54219324 Msa0688350:three_prime_UTR 45.0%
!! GCAAAGTGTTGAAACCATGG+AGG + chr4_4:54219564-54219583 None:intergenic 45.0%
!! GAAGCTCTGAAAACCATTCC+CGG - chr4_4:54219923-54219942 Msa0688350:CDS 45.0%
ACACACTCACCTCACTTCAT+TGG - chr4_4:54219989-54220008 Msa0688350:CDS 45.0%
GAAGGCCATGTTCCGAAAAT+AGG + chr4_4:54220022-54220041 None:intergenic 45.0%
CACTTGCCTTTCCATCTTGA+AGG + chr4_4:54220139-54220158 None:intergenic 45.0%
TATGTCACGTGTGGAGTTCA+TGG + chr4_4:54220266-54220285 None:intergenic 45.0%
AACTCCACACGTGACATAGA+CGG - chr4_4:54220268-54220287 Msa0688350:CDS 45.0%
AACTTTACTTCCAGCAGCAG+TGG + chr4_4:54220314-54220333 None:intergenic 45.0%
TGCTGCTGGAAGTAAAGTTG+AGG - chr4_4:54220315-54220334 Msa0688350:CDS 45.0%
GCTGCTGGAAGTAAAGTTGA+GGG - chr4_4:54220316-54220335 Msa0688350:CDS 45.0%
GCTACAGGGTCTTCATACAA+AGG + chr4_4:54220666-54220685 None:intergenic 45.0%
GCAAATGTGGCTATAGCTAC+AGG + chr4_4:54220681-54220700 None:intergenic 45.0%
TATAGCCACATTTGCAGCCA+TGG - chr4_4:54220686-54220705 Msa0688350:CDS 45.0%
TTTCTCCATGGCTGCAAATG+TGG + chr4_4:54220694-54220713 None:intergenic 45.0%
TTGTGGAGAGTTTCAAGCAC+TGG + chr4_4:54220753-54220772 None:intergenic 45.0%
GTGCTTGAAACTCTCCACAA+TGG - chr4_4:54220753-54220772 Msa0688350:CDS 45.0%
TCTCCACAATGGAACACCAT+GGG - chr4_4:54220764-54220783 Msa0688350:CDS 45.0%
TTACCCATGGTGTTCCATTG+TGG + chr4_4:54220770-54220789 None:intergenic 45.0%
GAGAGACAAACCAGTGACTT+TGG + chr4_4:54221016-54221035 None:intergenic 45.0%
!! CACTGGTTTGTCTCTCTATC+CGG - chr4_4:54221020-54221039 Msa0688350:intron 45.0%
!! ACTGGTTTGTCTCTCTATCC+GGG - chr4_4:54221021-54221040 Msa0688350:intron 45.0%
! TATCCGGGGAACTTTTCTTC+AGG - chr4_4:54221036-54221055 Msa0688350:CDS 45.0%
TTGCCTGAAGAAAAGTTCCC+CGG + chr4_4:54221042-54221061 None:intergenic 45.0%
CATGAGCTCAGGAAAACCAT+TGG + chr4_4:54221069-54221088 None:intergenic 45.0%
CCACTTGAGTAGCAAGTGTT+CGG + chr4_4:54221152-54221171 None:intergenic 45.0%
TACAAAACCAGCACCAAGTG+TGG - chr4_4:54221362-54221381 Msa0688350:intron 45.0%
!! TAACTATCCACACTTGGTGC+TGG + chr4_4:54221372-54221391 None:intergenic 45.0%
AGTTGCTGAAGAGACTGTTC+TGG + chr4_4:54221512-54221531 None:intergenic 45.0%
CCAGGATCAAGTGCTCTATT+GGG + chr4_4:54221750-54221769 None:intergenic 45.0%
TCCAGGATCAAGTGCTCTAT+TGG + chr4_4:54221751-54221770 None:intergenic 45.0%
CCTGCATCATAAACAAGTCC+AGG + chr4_4:54221768-54221787 None:intergenic 45.0%
! CCTGGACTTGTTTATGATGC+AGG - chr4_4:54221765-54221784 Msa0688350:CDS 45.0%
! ATGTTGGCTACGTAGATCGT+TGG + chr4_4:54221999-54222018 None:intergenic 45.0%
GAGGATAGAAGGTCCCAAAA+TGG - chr4_4:54222103-54222122 Msa0688350:CDS 45.0%
! TTGAGGCTAGTCACCACAAT+GGG + chr4_4:54222191-54222210 None:intergenic 45.0%
! GGGGTGTTAATTCTGAGTTG+AGG + chr4_4:54222208-54222227 None:intergenic 45.0%
ACTTGAGAAGGGTTTGGGCA+TGG + chr4_4:54219750-54219769 None:intergenic 50.0%
GTCAAGTAGTGAGGAAAGGG+TGG + chr4_4:54219792-54219811 None:intergenic 50.0%
TGAGGTGAGTGTGTTGTGTC+TGG + chr4_4:54219983-54220002 None:intergenic 50.0%
GGATTGAGGCCAATGAAGTG+AGG + chr4_4:54220001-54220020 None:intergenic 50.0%
ATGACCGTCTATGTCACGTG+TGG + chr4_4:54220275-54220294 None:intergenic 50.0%
ACACGTGACATAGACGGTCA+TGG - chr4_4:54220274-54220293 Msa0688350:CDS 50.0%
! GTTGAGGGTGCATCCTACTT+CGG - chr4_4:54220331-54220350 Msa0688350:CDS 50.0%
TATGCCTCTGGATCAGCCAT+AGG - chr4_4:54220355-54220374 Msa0688350:CDS 50.0%
GATACCTATGGCTGATCCAG+AGG + chr4_4:54220362-54220381 None:intergenic 50.0%
TCTACATCTGCAGGGAACAG+AGG - chr4_4:54220726-54220745 Msa0688350:CDS 50.0%
CTCTCCACAATGGAACACCA+TGG - chr4_4:54220763-54220782 Msa0688350:CDS 50.0%
AACAGTTGCTGCTGGCACAA+TGG - chr4_4:54220951-54220970 Msa0688350:intron 50.0%
GGAAATGGAGCCAAAGTCAC+TGG - chr4_4:54221003-54221022 Msa0688350:intron 50.0%
! CTGGTTTGTCTCTCTATCCG+GGG - chr4_4:54221022-54221041 Msa0688350:intron 50.0%
! GGGGAACTTTTCTTCAGGCA+AGG - chr4_4:54221041-54221060 Msa0688350:CDS 50.0%
TTCTTCAGGCAAGGTCCCAA+TGG - chr4_4:54221050-54221069 Msa0688350:CDS 50.0%
CAGAGCGAGAAACAAGATCG+TGG - chr4_4:54221110-54221129 Msa0688350:CDS 50.0%
! CCGAACACTTGCTACTCAAG+TGG - chr4_4:54221149-54221168 Msa0688350:CDS 50.0%
AAACCAGACATCACAGCACC+AGG - chr4_4:54221432-54221451 Msa0688350:intron 50.0%
TGGTATTGCAGCTCTGTTGC+TGG + chr4_4:54221492-54221511 None:intergenic 50.0%
ATGTCATGTCCACACGTTGC+AGG - chr4_4:54221555-54221574 Msa0688350:CDS 50.0%
TAGCCGATCTAATGGCTGCT+GGG + chr4_4:54221620-54221639 None:intergenic 50.0%
ATAGCCGATCTAATGGCTGC+TGG + chr4_4:54221621-54221640 None:intergenic 50.0%
! ACCAGCTTCGCCTTTAGCTT+TGG - chr4_4:54221707-54221726 Msa0688350:CDS 50.0%
!! CCAGCTTCGCCTTTAGCTTT+GGG - chr4_4:54221708-54221727 Msa0688350:CDS 50.0%
! CCCAATAGAGCACTTGATCC+TGG - chr4_4:54221747-54221766 Msa0688350:CDS 50.0%
!! CGTTGGTTCCTCTCCAACAT+TGG + chr4_4:54221982-54222001 None:intergenic 50.0%
! GTTGAGGCTAGTCACCACAA+TGG + chr4_4:54222192-54222211 None:intergenic 50.0%
CACACTACAACCACTGCTGC+TGG - chr4_4:54220301-54220320 Msa0688350:CDS 55.0%
TCCTACTTCGGCTATGCCTC+TGG - chr4_4:54220343-54220362 Msa0688350:CDS 55.0%
! TCCAGAGGCATAGCCGAAGT+AGG + chr4_4:54220347-54220366 None:intergenic 55.0%
!! GTTCCTGGTGCTGTGATGTC+TGG + chr4_4:54221438-54221457 None:intergenic 55.0%
GAGCCCAGCAGCCATTAGAT+CGG - chr4_4:54221614-54221633 Msa0688350:CDS 55.0%
CCCAAAGCTAAAGGCGAAGC+TGG + chr4_4:54221711-54221730 None:intergenic 55.0%
!! TCGCCTTTAGCTTTGGGAGC+CGG - chr4_4:54221714-54221733 Msa0688350:CDS 55.0%
TGTCCGGCTCCCAAAGCTAA+AGG + chr4_4:54221720-54221739 None:intergenic 55.0%
GCTGCTACACCTGCAACGTG+TGG + chr4_4:54221567-54221586 None:intergenic 60.0%
TGGCTGCTGGGCTCCAACAA+GGG + chr4_4:54221608-54221627 None:intergenic 60.0%
ATGGCTGCTGGGCTCCAACA+AGG + chr4_4:54221609-54221628 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 54219292 54222527 54219292 ID=Msa0688350;Name=Msa0688350
chr4_4 mRNA 54219292 54222527 54219292 ID=Msa0688350-mRNA-1;Parent=Msa0688350;Name=Msa0688350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=274|1|1|1|1|1|3|295|787
chr4_4 exon 54219292 54220873 54219292 ID=Msa0688350-mRNA-1:exon:14231;Parent=Msa0688350-mRNA-1
chr4_4 exon 54221034 54221299 54221034 ID=Msa0688350-mRNA-1:exon:14230;Parent=Msa0688350-mRNA-1
chr4_4 exon 54221443 54222527 54221443 ID=Msa0688350-mRNA-1:exon:14229;Parent=Msa0688350-mRNA-1
chr4_4 five_prime_UTR 54222254 54222527 54222254 ID=Msa0688350-mRNA-1:five_prime_utr;Parent=Msa0688350-mRNA-1
chr4_4 CDS 54221443 54222253 54221443 ID=Msa0688350-mRNA-1:cds;Parent=Msa0688350-mRNA-1
chr4_4 CDS 54221034 54221299 54221034 ID=Msa0688350-mRNA-1:cds;Parent=Msa0688350-mRNA-1
chr4_4 CDS 54219587 54220873 54219587 ID=Msa0688350-mRNA-1:cds;Parent=Msa0688350-mRNA-1
chr4_4 three_prime_UTR 54219292 54219586 54219292 ID=Msa0688350-mRNA-1:three_prime_utr;Parent=Msa0688350-mRNA-1
Gene Sequence

>Msa0688350

ATGGTTTCAACACTTTGCTTGTGCACTAAAGCCATACCAAATATTGATCATCTATACTCCACCATGGCTTCACATATTCATCACTATCTACTATTATCCTTTATCATAATCCTTCACCTCTTTTCATCTACATTGTGTGATCAAAACTCCAACAACTATATTATTCACATGAACTTATCAGCCATGCCCAAACCCTTCTCAAGTCAACAAAGTTGGTACTTAGCCACCCTTTCCTCACTACTTGACAATATTACTTCTAACAACGACCAGTTGAACCATATTTTTTCTTCAAAACTCACATATACCTACACTAATGTCATGAATGGTTTCAGTGCAAGTTTGTCTCCTTTAGAGCTTGAAGCTCTGAAAACCATTCCCGGATATATTTCATCCATAAGAGATTTACCTATCAAACCAGACACAACACACTCACCTCACTTCATTGGCCTCAATCCTATTTTCGGAACATGGCCTTCAACACAATATGGAAAAAACGTCATCATTGGTTTAATAGACAGTGGAATTTGGCCAGAAAGTGAAAGCTTCAAAGATGATGAGATGCCTAATATCCCTTCAAGATGGAAAGGCAAGTGTGAAAATGGTACTCAATTTGATCCGTCATTGTGCAACAAAAAACTCATAGGAGCTCGATTCTTTAACAAAGGATTACTAGCAAATAATCCTAACATCACTATAACCATGAACTCCACACGTGACATAGACGGTCATGGTACTCACACTACAACCACTGCTGCTGGAAGTAAAGTTGAGGGTGCATCCTACTTCGGCTATGCCTCTGGATCAGCCATAGGCATGGCTCCACATGCTCATGTATCCATGTACAAGGTGTTGTGGAAAGAAGGAGCATATGCATCTGATACAATAGCTGCAATTGATAGTGCAATATCAGATGGTGTAGATGTTCTTTCATTATCATTGGGTTTTGACGAGGCACCTTTGTATGAAGACCCTGTAGCTATAGCCACATTTGCAGCCATGGAGAAAAACATTTTTGTGTCTACATCTGCAGGGAACAGAGGACCAGTGCTTGAAACTCTCCACAATGGAACACCATGGGTAATAACAGTTGCTGCTGGCACAATGGATCGTGAATTTCATGGGGATTTAACACTTGGAAATGGAGCCAAAGTCACTGGTTTGTCTCTCTATCCGGGGAACTTTTCTTCAGGCAAGGTCCCAATGGTTTTCCTGAGCTCATGTGATAATTTGAAAGAACTCATCAGAGCGAGAAACAAGATCGTGGTGTGTGAAGACAAGAACCGAACACTTGCTACTCAAGTGGATAACTTGGACAGAATAAAAGTTGTTGCGGGTGTTTTCATATCAAATAGTTCTGAGGATATAACATATTACATTCAAACTAAGTTTCCATCTATTTTTTTGAATCCAATTAATGGAGAACTTATCAAGGATTTCATCAAGTGCAACACTAATCCAAAAGCAAGCATGACATTTAATAAAACTGTTTTAGGTACAAAACCAGCACCAAGTGTGGATAGTTATAGCTCAAGAGGACCATCACATAGTTGTCCATTTGTATTGAAACCAGACATCACAGCACCAGGAACACTAATCTTAGCTTCATGGCCTCAAAATGTTCCAGCAACAGAGCTGCAATACCAGAACAGTCTCTTCAGCAACTTCAACCTGTTAAGTGGAACATCAATGTCATGTCCACACGTTGCAGGTGTAGCAGCACTTTTAAAAGAAATGCACCCTTGTTGGAGCCCAGCAGCCATTAGATCGGCTATGATGACAACATCAGACATGTTAGACAACACAAAAGAACTCATCACAGACATTGGTAATGGTTACAAACCAGCTTCGCCTTTAGCTTTGGGAGCCGGACATATCAATCCCAATAGAGCACTTGATCCTGGACTTGTTTATGATGCAGGAAAACAAGATTATGTGAATCTTCTATGTGCATTAAACTTCACTCAGAAGAATATCACGGCCATCACGAGATCATCTTTTAACAATTGTTCTAACCCTTCTTTGGACCTTAATTACCCTTCTTTTATTGCCTTTTCCAATAATGCTAGTATTAAATCAAAGGTGATTACACAAGAATTTCAAAGAACAGTAACCAATGTTGGAGAGGAACCAACGATCTACGTAGCCAACATTACACCTATTGAAGGGTTCCATGTTAGTGTTGTGCCAAACAAGTTGGTGTTTAAGGAGAAAAATGAAAAGGTGGCATACAAGTTGAGGATAGAAGGTCCCAAAATGGAGCAAAATAAAGTAGTTTTTGGGTATCTCACTTGGACAGACTCGAAACACAATGTTAGAAGTCCCATTGTGGTGACTAGCCTCAACTCAGAATTAACACCCCCATAG
Protein sequence

>Msa0688350

MVSTLCLCTKAIPNIDHLYSTMASHIHHYLLLSFIIILHLFSSTLCDQNSNNYIIHMNLSAMPKPFSSQQSWYLATLSSLLDNITSNNDQLNHIFSSKLTYTYTNVMNGFSASLSPLELEALKTIPGYISSIRDLPIKPDTTHSPHFIGLNPIFGTWPSTQYGKNVIIGLIDSGIWPESESFKDDEMPNIPSRWKGKCENGTQFDPSLCNKKLIGARFFNKGLLANNPNITITMNSTRDIDGHGTHTTTTAAGSKVEGASYFGYASGSAIGMAPHAHVSMYKVLWKEGAYASDTIAAIDSAISDGVDVLSLSLGFDEAPLYEDPVAIATFAAMEKNIFVSTSAGNRGPVLETLHNGTPWVITVAAGTMDREFHGDLTLGNGAKVTGLSLYPGNFSSGKVPMVFLSSCDNLKELIRARNKIVVCEDKNRTLATQVDNLDRIKVVAGVFISNSSEDITYYIQTKFPSIFLNPINGELIKDFIKCNTNPKASMTFNKTVLGTKPAPSVDSYSSRGPSHSCPFVLKPDITAPGTLILASWPQNVPATELQYQNSLFSNFNLLSGTSMSCPHVAGVAALLKEMHPCWSPAAIRSAMMTTSDMLDNTKELITDIGNGYKPASPLALGAGHINPNRALDPGLVYDAGKQDYVNLLCALNFTQKNITAITRSSFNNCSNPSLDLNYPSFIAFSNNASIKSKVITQEFQRTVTNVGEEPTIYVANITPIEGFHVSVVPNKLVFKEKNEKVAYKLRIEGPKMEQNKVVFGYLTWTDSKHNVRSPIVVTSLNSELTPP*