AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122540 MtrunA17_Chr1g0182541 84.520 323 4 2 1 277 1 323 0.0 538
Msa0122540 MtrunA17_Chr7g0262941 71.914 324 44 3 1 277 1 324 1.13e-167 467
Msa0122540 MtrunA17_Chr1g0202861 52.459 305 99 2 13 271 49 353 3.24e-107 315
Msa0122540 MtrunA17_Chr1g0202931 52.787 305 98 2 13 271 8 312 5.63e-107 313
Msa0122540 MtrunA17_Chr8g0386971 50.968 310 106 2 10 273 5 314 1.47e-106 311
Msa0122540 MtrunA17_Chr1g0202871 52.131 305 100 2 13 271 8 312 2.43e-105 308
Msa0122540 MtrunA17_Chr1g0202891 52.131 305 100 2 13 271 8 312 4.01e-105 308
Msa0122540 MtrunA17_Chr6g0470321 51.792 307 99 2 14 271 17 323 3.67e-103 303
Msa0122540 MtrunA17_Chr6g0470501 51.634 306 99 2 15 271 37 342 7.85e-100 295
Msa0122540 MtrunA17_Chr8g0388831 44.343 327 132 5 1 277 1 327 3.63e-79 243
Msa0122540 MtrunA17_Chr4g0058731 41.587 315 134 3 8 272 19 333 3.91e-75 233
Msa0122540 MtrunA17_Chr3g0117251 41.071 168 68 1 136 272 1 168 2.41e-37 130
Msa0122540 MtrunA17_Chr3g0117241 44.218 147 63 3 8 135 8 154 2.60e-30 111
Msa0122540 MtrunA17_Chr6g0481311 31.019 216 119 6 33 224 60 269 7.43e-15 73.9
Msa0122540 MtrunA17_Chr2g0317921 33.193 238 115 9 36 234 88 320 1.05e-13 70.5
Msa0122540 MtrunA17_Chr1g0202911 48.438 64 33 0 38 101 4 67 2.06e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122540 AT2G37540.1 61.059 321 79 2 2 276 1 321 1.59e-137 390
Msa0122540 AT5G02540.1 61.682 321 77 2 2 276 1 321 6.72e-133 379
Msa0122540 AT2G37540.2 64.463 242 70 1 2 227 1 242 1.04e-112 325
Msa0122540 AT4G23430.2 50.160 313 109 2 10 275 5 317 1.07e-107 315
Msa0122540 AT4G23420.1 50.804 311 106 2 10 273 5 315 2.94e-107 314
Msa0122540 AT4G23420.2 50.804 311 106 2 10 273 5 315 2.94e-107 314
Msa0122540 AT4G23420.3 50.980 306 103 2 15 273 27 332 2.48e-106 312
Msa0122540 AT4G23430.1 49.840 313 108 3 10 275 5 315 8.49e-105 308
Msa0122540 AT4G11410.1 50.329 304 105 2 13 270 8 311 1.41e-101 299
Msa0122540 AT4G23430.4 47.284 313 108 3 10 275 5 307 1.38e-97 289
Msa0122540 AT4G23430.3 46.965 313 107 4 10 275 5 305 1.11e-94 281
Msa0122540 AT4G23420.5 53.659 246 98 1 10 239 5 250 4.62e-91 271
Msa0122540 AT4G23420.4 53.909 243 96 1 10 236 5 247 1.76e-90 269
Msa0122540 AT4G11410.2 56.140 228 84 1 13 224 8 235 6.27e-87 260
Msa0122540 AT4G24050.1 44.654 318 125 4 10 277 10 326 2.25e-80 246
Msa0122540 AT5G50130.1 42.547 322 135 4 1 272 1 322 4.29e-75 233
Msa0122540 AT5G50130.9 45.868 242 113 2 1 224 1 242 3.66e-65 204
Msa0122540 AT4G24050.2 49.130 230 97 3 10 220 10 238 1.32e-64 204
Msa0122540 AT5G50130.2 45.868 242 113 2 1 224 1 242 1.65e-64 205
Msa0122540 AT5G50130.3 45.679 243 113 3 1 224 1 243 1.38e-63 201
Msa0122540 AT5G50130.4 45.679 243 113 3 1 224 1 243 5.93e-63 201
Msa0122540 AT1G64590.1 42.434 304 118 4 22 272 22 321 1.64e-62 200
Msa0122540 AT5G50130.8 40.780 282 120 2 38 272 7 288 2.64e-62 199
Msa0122540 AT5G50130.7 40.636 283 120 3 38 272 7 289 8.41e-61 195
Msa0122540 AT5G50130.6 44.059 202 97 1 39 224 8 209 1.07e-50 168
Msa0122540 AT5G50130.5 43.842 203 97 2 39 224 8 210 3.07e-49 165
Msa0122540 AT1G03630.2 29.841 315 135 12 36 271 89 396 1.53e-15 76.3
Msa0122540 AT1G03630.1 29.841 315 135 12 36 271 91 398 1.68e-15 76.3
Msa0122540 AT4G27760.1 30.986 213 111 8 34 220 57 259 8.40e-14 71.2
Msa0122540 AT4G27440.2 29.137 278 145 10 19 247 69 343 9.99e-14 70.9
Msa0122540 AT4G27440.1 29.137 278 145 10 19 247 69 343 9.99e-14 70.9
Msa0122540 AT4G09750.1 25.581 258 130 7 38 247 47 290 4.03e-13 68.9
Msa0122540 AT5G53090.1 30.144 209 118 5 34 220 56 258 1.30e-12 67.8
Msa0122540 AT5G04070.1 22.368 304 168 8 36 277 60 357 6.03e-12 65.5
Msa0122540 AT5G15940.4 24.303 251 145 7 17 228 41 285 1.36e-11 64.3
Msa0122540 AT5G15940.3 24.303 251 145 7 17 228 41 285 1.48e-11 64.3
Msa0122540 AT5G15940.2 24.303 251 145 7 17 228 41 285 1.48e-11 64.3
Msa0122540 AT5G15940.1 24.303 251 145 7 17 228 40 284 1.53e-11 64.3
Msa0122540 AT5G53100.1 32.877 219 111 8 33 224 43 252 6.60e-11 62.4

Find 95 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAACTACGAATATGATTT+TGG 0.114163 1_3:-49275105 None:intergenic
GATAATATCAATGATCAAAT+TGG 0.192674 1_3:+49273510 Msa0122540:CDS
CAAGGAAATTTGGATTAGTT+TGG 0.232729 1_3:-49271373 None:intergenic
ATTATACCGACTCAACTTAT+AGG 0.235878 1_3:+49275054 Msa0122540:three_prime_UTR
ATGAGGCTAGCAAGGAAATT+TGG 0.238363 1_3:-49271383 None:intergenic
GAAGAAGTTTGTAAAATTAA+AGG 0.264114 1_3:-49275281 None:intergenic
CCAAGCTTGAAAGGGGTAAC+TGG 0.269808 1_3:+49274881 Msa0122540:CDS
TCTTCTGAGAGTTATTTAAA+TGG 0.277308 1_3:+49275364 Msa0122540:three_prime_UTR
AAAAGCATGAATGAATAGTT+TGG 0.293971 1_3:-49271339 None:intergenic
TATTCATTTGATTATTTCCT+TGG 0.335332 1_3:+49271605 Msa0122540:five_prime_UTR
TACTCTGACAAGAAGGCTTA+TGG 0.335582 1_3:+49273624 Msa0122540:CDS
ATATTATCTTTCAAGCTTAA+CGG 0.340783 1_3:+49275189 Msa0122540:three_prime_UTR
CCAGTTACCCCTTTCAAGCT+TGG 0.348372 1_3:-49274881 None:intergenic
ATGGCTGGACCAAGTGGATT+TGG 0.358790 1_3:+49271683 Msa0122540:CDS
TCCTTCTCTATTGTTTGAAC+CGG 0.368071 1_3:+49275256 Msa0122540:three_prime_UTR
ATTCAAGTGGTTTGAACTAA+AGG 0.371655 1_3:-49275306 None:intergenic
GACTCTTGGGAAGAAAACTT+TGG 0.375143 1_3:+49274957 Msa0122540:CDS
TGCTTTCTCTAGAATCAAAA+TGG 0.393015 1_3:+49271634 Msa0122540:exon
ACTCTTGGGAAGAAAACTTT+GGG 0.393274 1_3:+49274958 Msa0122540:CDS
GCAGGAGGAGCAAGTGGTAT+AGG 0.393987 1_3:+49272806 Msa0122540:intron
CAAGTAGAAGGTTGGTCAAA+AGG 0.414570 1_3:-49273386 None:intergenic
CTCTTCATCCAAGCTTGAAA+GGG 0.423486 1_3:+49274873 Msa0122540:CDS
CGCAAAAGCCACTGGAATTG+AGG 0.424532 1_3:+49273425 Msa0122540:CDS
CCAAGTGCATTTGCGTCAAA+TGG 0.424836 1_3:+49274935 Msa0122540:CDS
AAAGCATGAATGAATAGTTT+GGG 0.424969 1_3:-49271338 None:intergenic
TGAGCTTTCTCGTCGCTTGA+AGG 0.425790 1_3:+49273680 Msa0122540:CDS
TCGTTGGTCACAGGCATGGC+TGG 0.432678 1_3:+49271668 Msa0122540:CDS
GTTTGTAAAATTAAAGGATC+CGG 0.434388 1_3:-49275275 None:intergenic
ATTTGCGTCAAATGGACTCT+TGG 0.434536 1_3:+49274943 Msa0122540:CDS
ATGTAGTATGTTGGCTAACT+TGG 0.439546 1_3:-49273652 None:intergenic
CATTGTTGTTTATAGGAAGA+AGG 0.448332 1_3:+49274049 Msa0122540:intron
GAAAGAAAATTTAATGAGGA+AGG 0.452648 1_3:-49271412 None:intergenic
CCATTTGACGCAAATGCACT+TGG 0.458408 1_3:-49274935 None:intergenic
TTTGCGTCAAATGGACTCTT+GGG 0.471766 1_3:+49274944 Msa0122540:CDS
TTTCAAAGTCTTGATTGTCT+TGG 0.471804 1_3:+49275008 Msa0122540:exon
CAATTCCATCTTGTGTCAGT+TGG 0.474030 1_3:-49273226 None:intergenic
ATAATATCAATGATCAAATT+GGG 0.478493 1_3:+49273511 Msa0122540:CDS
AGGAGCAAGTGGTATAGGCT+TGG 0.478994 1_3:+49272811 Msa0122540:CDS
CTCATTTGCATGTAGTATGT+TGG 0.487271 1_3:-49273661 None:intergenic
GCTCTTCATCCAAGCTTGAA+AGG 0.487681 1_3:+49274872 Msa0122540:CDS
TCCATCTTGTGTCAGTTGGA+AGG 0.493715 1_3:-49273222 None:intergenic
CCATCTTGTGTCAGTTGGAA+GGG 0.499557 1_3:-49273221 None:intergenic
GCAAAAGCCACTGGAATTGA+GGG 0.501271 1_3:+49273426 Msa0122540:CDS
GATGTGTATATATGCATGTT+GGG 0.503280 1_3:-49271510 None:intergenic
CTTGGAGACAGCACGAGTCT+TGG 0.504599 1_3:+49272829 Msa0122540:CDS
CAGTTTGCAACAAATCATCT+TGG 0.507918 1_3:+49273254 Msa0122540:CDS
TTTGGATTAGTTTGGAAAGA+GGG 0.508405 1_3:-49271365 None:intergenic
TACTCCTGGGTGTACTGAGT+TGG 0.511760 1_3:-49274086 None:intergenic
CATCATCGCCGCAAGAAACA+TGG 0.516344 1_3:+49272871 Msa0122540:CDS
TTTCAGTTACTCTGACAAGA+AGG 0.517957 1_3:+49273617 Msa0122540:intron
AATGAGGAAGGTATAGTATG+AGG 0.518267 1_3:-49271400 None:intergenic
GAGTTATTTAAATGGAAAAG+TGG 0.518296 1_3:+49275372 Msa0122540:three_prime_UTR
TTTCTCGTTGGTCACAGGCA+TGG 0.523160 1_3:+49271664 Msa0122540:CDS
CTTAAATGAACAAGTAGTAA+TGG 0.525923 1_3:-49271543 None:intergenic
CAAGCTTGAAAGGGGTAACT+GGG 0.526253 1_3:+49274882 Msa0122540:CDS
CATACCTACACTTATGAAGA+AGG 0.526398 1_3:+49273477 Msa0122540:CDS
CCCTTCCAACTGACACAAGA+TGG 0.527234 1_3:+49273221 Msa0122540:CDS
AAACAAACCGCAAAAGCCAC+TGG 0.530342 1_3:+49273417 Msa0122540:CDS
TAACGGCATTAGTTAAGTGT+TGG 0.532064 1_3:+49275206 Msa0122540:three_prime_UTR
CATCTTGTGTCAGTTGGAAG+GGG 0.533182 1_3:-49273220 None:intergenic
ATTTGGATTAGTTTGGAAAG+AGG 0.537173 1_3:-49271366 None:intergenic
TTATGAAGAAGGCATTCGAT+TGG 0.541423 1_3:+49273488 Msa0122540:CDS
AAAGTACACACAAAAGAAGA+AGG 0.544573 1_3:-49275161 None:intergenic
TGAATAGTTTGGGAAATAGC+AGG 0.547133 1_3:-49271328 None:intergenic
TTCTCTAGAATCAAAATGGT+GGG 0.548364 1_3:+49271638 Msa0122540:exon
AATCTCACTGCAATTATCAC+AGG 0.550167 1_3:+49271752 Msa0122540:CDS
AGAAGAAAGAAAATTTAATG+AGG 0.550393 1_3:-49271416 None:intergenic
TGCAGACTCCATGTTTCTTG+CGG 0.551159 1_3:-49272879 None:intergenic
ACGAGTCTTGGCTCTTCGAA+AGG 0.553010 1_3:+49272841 Msa0122540:CDS
GGTATAGTATGAGGCTAGCA+AGG 0.558716 1_3:-49271391 None:intergenic
AACTTGTTCAGCTGTTGTAG+AGG 0.569993 1_3:-49271708 None:intergenic
ATTCAAATAAAGATAACGTG+TGG 0.570775 1_3:-49271458 None:intergenic
TGATGTGTATATATGCATGT+TGG 0.571262 1_3:-49271511 None:intergenic
AAGCCACTGGAATTGAGGGC+AGG 0.573938 1_3:+49273430 Msa0122540:CDS
TTCAAATAAAGATAACGTGT+GGG 0.583217 1_3:-49271457 None:intergenic
TTTCTCTAGAATCAAAATGG+TGG 0.588043 1_3:+49271637 Msa0122540:exon
GGACAACAAGTCTGCTCGAG+TGG 0.588369 1_3:+49272928 Msa0122540:CDS
GATCCTGCCCTCAATTCCAG+TGG 0.595826 1_3:-49273433 None:intergenic
TCCGGTTCAAACAATAGAGA+AGG 0.595854 1_3:-49275257 None:intergenic
ACAAATGCAGGAGGAGCAAG+TGG 0.598604 1_3:+49272800 Msa0122540:intron
AGAGAGTTGAGTTATTCAAG+TGG 0.601589 1_3:-49275319 None:intergenic
TAGAGAAAGCACACAAACCA+AGG 0.609162 1_3:-49271622 None:intergenic
TTATAGCCTATAAGTTGAGT+CGG 0.617338 1_3:-49275060 None:intergenic
AAGAAACATGGAGTCTGCAA+AGG 0.621142 1_3:+49272883 Msa0122540:CDS
ACAGGCATGGCTGGACCAAG+TGG 0.621510 1_3:+49271677 Msa0122540:CDS
AGCTAAACAAATTATACTAG+AGG 0.622644 1_3:+49272907 Msa0122540:CDS
AAATGAACAAGTAGTAATGG+TGG 0.633497 1_3:-49271540 None:intergenic
ACAGCTGAACAAGTTACTGA+AGG 0.633665 1_3:+49271716 Msa0122540:CDS
TCTTCATCCAAGCTTGAAAG+GGG 0.636952 1_3:+49274874 Msa0122540:CDS
TTGTTCATTTAAGCTCACAA+AGG 0.643235 1_3:+49271553 Msa0122540:five_prime_UTR
AATGCCTTCTTCATAAGTGT+AGG 0.646281 1_3:-49273481 None:intergenic
GTAGAGGATCCAAATCCACT+TGG 0.663839 1_3:-49271692 None:intergenic
TAACAGACTTCACTGAACAA+AGG 0.665475 1_3:-49272967 None:intergenic
AAAGTGGATGACTTCACACA+AGG 0.722993 1_3:+49275388 Msa0122540:three_prime_UTR
ACAGCCAACTCAGTACACCC+AGG 0.731735 1_3:+49274082 Msa0122540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAACAACAAATA+TGG - chr1_3:49274809-49274828 None:intergenic 10.0%
!!! TTTGTTAATTTTAAAATTGT+AGG + chr1_3:49274826-49274845 Msa0122540:intron 10.0%
!!! TTGTTAATTTTAAAATTGTA+GGG + chr1_3:49274827-49274846 Msa0122540:intron 10.0%
!! AAAAATTAAAACAACAAATA+TGG - chr1_3:49274809-49274828 None:intergenic 10.0%
!!! TTTGTTAATTTTAAAATTGT+AGG + chr1_3:49274826-49274845 Msa0122540:intron 10.0%
!!! TTGTTAATTTTAAAATTGTA+GGG + chr1_3:49274827-49274846 Msa0122540:intron 10.0%
!!! TTAAGCAATGAATTTTTTTT+AGG - chr1_3:49272170-49272189 None:intergenic 15.0%
!! CTAATGATTATAATTCTTAA+CGG + chr1_3:49272443-49272462 Msa0122540:intron 15.0%
!! ATAATATCAATGATCAAATT+GGG + chr1_3:49273511-49273530 Msa0122540:CDS 15.0%
!!! TTAGGAAATTTTTATTGTAA+AGG - chr1_3:49273583-49273602 None:intergenic 15.0%
!! GAAAAATTTATGGAAATATT+AGG - chr1_3:49273601-49273620 None:intergenic 15.0%
!! CTATTGTAATAAATAAATCT+TGG + chr1_3:49273765-49273784 Msa0122540:intron 15.0%
!!! TTCTTTTCCTTATTTATTAT+AGG + chr1_3:49274210-49274229 Msa0122540:intron 15.0%
!!! TCTTTTCCTTATTTATTATA+GGG + chr1_3:49274211-49274230 Msa0122540:intron 15.0%
!! AATTAACCCTATAATAAATA+AGG - chr1_3:49274220-49274239 None:intergenic 15.0%
!! CAAAATTCTGAATATTTATA+GGG - chr1_3:49274254-49274273 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG - chr1_3:49274255-49274274 None:intergenic 15.0%
!!! TATTGATGGAAAATTTTATA+GGG - chr1_3:49274314-49274333 None:intergenic 15.0%
!!! ATATTGATGGAAAATTTTAT+AGG - chr1_3:49274315-49274334 None:intergenic 15.0%
!! ACAAAACTGTAAATATTTAT+AGG + chr1_3:49274471-49274490 Msa0122540:intron 15.0%
!! CAAAACTGTAAATATTTATA+GGG + chr1_3:49274472-49274491 Msa0122540:intron 15.0%
!! AAATAAAACATTGTAGAATA+AGG - chr1_3:49274628-49274647 None:intergenic 15.0%
!!! TTAAGCAATGAATTTTTTTT+AGG - chr1_3:49272170-49272189 None:intergenic 15.0%
!! CTAATGATTATAATTCTTAA+CGG + chr1_3:49272443-49272462 Msa0122540:intron 15.0%
!! ATAATATCAATGATCAAATT+GGG + chr1_3:49273511-49273530 Msa0122540:CDS 15.0%
!!! TTAGGAAATTTTTATTGTAA+AGG - chr1_3:49273583-49273602 None:intergenic 15.0%
!! GAAAAATTTATGGAAATATT+AGG - chr1_3:49273601-49273620 None:intergenic 15.0%
!! CTATTGTAATAAATAAATCT+TGG + chr1_3:49273765-49273784 Msa0122540:intron 15.0%
!!! TTCTTTTCCTTATTTATTAT+AGG + chr1_3:49274210-49274229 Msa0122540:intron 15.0%
!!! TCTTTTCCTTATTTATTATA+GGG + chr1_3:49274211-49274230 Msa0122540:intron 15.0%
!! AATTAACCCTATAATAAATA+AGG - chr1_3:49274220-49274239 None:intergenic 15.0%
!! CAAAATTCTGAATATTTATA+GGG - chr1_3:49274254-49274273 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG - chr1_3:49274255-49274274 None:intergenic 15.0%
!!! TATTGATGGAAAATTTTATA+GGG - chr1_3:49274314-49274333 None:intergenic 15.0%
!!! ATATTGATGGAAAATTTTAT+AGG - chr1_3:49274315-49274334 None:intergenic 15.0%
!! ACAAAACTGTAAATATTTAT+AGG + chr1_3:49274471-49274490 Msa0122540:intron 15.0%
!! CAAAACTGTAAATATTTATA+GGG + chr1_3:49274472-49274491 Msa0122540:intron 15.0%
!! AAATAAAACATTGTAGAATA+AGG - chr1_3:49274628-49274647 None:intergenic 15.0%
!! AGAAGAAAGAAAATTTAATG+AGG - chr1_3:49271419-49271438 None:intergenic 20.0%
!! TATTCATTTGATTATTTCCT+TGG + chr1_3:49271605-49271624 Msa0122540:five_prime_UTR 20.0%
!! TTAGTTATATATATGCACAA+AGG - chr1_3:49272271-49272290 None:intergenic 20.0%
!!! AATCAAGACATGTTTTATTA+TGG + chr1_3:49272290-49272309 Msa0122540:intron 20.0%
!! TCTTTATTATACTGTATAGT+TGG + chr1_3:49272531-49272550 Msa0122540:intron 20.0%
!!! TGGTTAAAGTATTATTTAGA+AGG + chr1_3:49272551-49272570 Msa0122540:intron 20.0%
!! TATTCTGTCAAAAATTTATG+AGG + chr1_3:49272601-49272620 Msa0122540:intron 20.0%
!! ATTCTGTCAAAAATTTATGA+GGG + chr1_3:49272602-49272621 Msa0122540:intron 20.0%
!! AGAACAAATAAAACATGATT+TGG - chr1_3:49272713-49272732 None:intergenic 20.0%
!!! TTTTATTTGTTCTTGATTAG+TGG + chr1_3:49272720-49272739 Msa0122540:intron 20.0%
!! TATGTTATTAAGTAGCTATT+TGG - chr1_3:49273157-49273176 None:intergenic 20.0%
!! TAGCTACTTAATAACATAAT+TGG + chr1_3:49273159-49273178 Msa0122540:intron 20.0%
!!! TAATTGGTTGTATTTTTTTC+AGG + chr1_3:49273357-49273376 Msa0122540:intron 20.0%
!! GATAATATCAATGATCAAAT+TGG + chr1_3:49273510-49273529 Msa0122540:CDS 20.0%
!!! TAATCTTTTTCATGTACTAT+TGG + chr1_3:49273717-49273736 Msa0122540:intron 20.0%
!!! AAATTGAATGAATTCCTTTT+AGG - chr1_3:49273864-49273883 None:intergenic 20.0%
!!! TGTTATTTAATGCACAAATT+TGG - chr1_3:49274013-49274032 None:intergenic 20.0%
!!! TTTTTGACATTGTTGTTTAT+AGG + chr1_3:49274042-49274061 Msa0122540:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr1_3:49274285-49274304 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr1_3:49274286-49274305 None:intergenic 20.0%
!! ATAGGGATTAAAAATATTGA+TGG - chr1_3:49274328-49274347 None:intergenic 20.0%
!!! TGCTGATGAAAATTTTTATA+GGG - chr1_3:49274345-49274364 None:intergenic 20.0%
!!! ATGCTGATGAAAATTTTTAT+AGG - chr1_3:49274346-49274365 None:intergenic 20.0%
!! AGACTTAGACATATAATAAA+GGG - chr1_3:49274515-49274534 None:intergenic 20.0%
!! TAGACTTAGACATATAATAA+AGG - chr1_3:49274516-49274535 None:intergenic 20.0%
!! GAATTAAAATAAATACCTGT+GGG - chr1_3:49274603-49274622 None:intergenic 20.0%
!!! ATAACTACGAATATGATTTT+GGG - chr1_3:49275107-49275126 None:intergenic 20.0%
!!! TATAACTACGAATATGATTT+TGG - chr1_3:49275108-49275127 None:intergenic 20.0%
!! ATATTATCTTTCAAGCTTAA+CGG + chr1_3:49275189-49275208 Msa0122540:three_prime_UTR 20.0%
!! GAAGAAGTTTGTAAAATTAA+AGG - chr1_3:49275284-49275303 None:intergenic 20.0%
!! AGAAGAAAGAAAATTTAATG+AGG - chr1_3:49271419-49271438 None:intergenic 20.0%
!! TATTCATTTGATTATTTCCT+TGG + chr1_3:49271605-49271624 Msa0122540:five_prime_UTR 20.0%
!! TTAGTTATATATATGCACAA+AGG - chr1_3:49272271-49272290 None:intergenic 20.0%
!!! AATCAAGACATGTTTTATTA+TGG + chr1_3:49272290-49272309 Msa0122540:intron 20.0%
!! TCTTTATTATACTGTATAGT+TGG + chr1_3:49272531-49272550 Msa0122540:intron 20.0%
!!! TGGTTAAAGTATTATTTAGA+AGG + chr1_3:49272551-49272570 Msa0122540:intron 20.0%
!! TATTCTGTCAAAAATTTATG+AGG + chr1_3:49272601-49272620 Msa0122540:intron 20.0%
!! ATTCTGTCAAAAATTTATGA+GGG + chr1_3:49272602-49272621 Msa0122540:intron 20.0%
!! AGAACAAATAAAACATGATT+TGG - chr1_3:49272713-49272732 None:intergenic 20.0%
!!! TTTTATTTGTTCTTGATTAG+TGG + chr1_3:49272720-49272739 Msa0122540:intron 20.0%
!! TATGTTATTAAGTAGCTATT+TGG - chr1_3:49273157-49273176 None:intergenic 20.0%
!! TAGCTACTTAATAACATAAT+TGG + chr1_3:49273159-49273178 Msa0122540:intron 20.0%
!!! TAATTGGTTGTATTTTTTTC+AGG + chr1_3:49273357-49273376 Msa0122540:intron 20.0%
!! GATAATATCAATGATCAAAT+TGG + chr1_3:49273510-49273529 Msa0122540:CDS 20.0%
!!! TAATCTTTTTCATGTACTAT+TGG + chr1_3:49273717-49273736 Msa0122540:intron 20.0%
!!! AAATTGAATGAATTCCTTTT+AGG - chr1_3:49273864-49273883 None:intergenic 20.0%
!!! TGTTATTTAATGCACAAATT+TGG - chr1_3:49274013-49274032 None:intergenic 20.0%
!!! TTTTTGACATTGTTGTTTAT+AGG + chr1_3:49274042-49274061 Msa0122540:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr1_3:49274285-49274304 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr1_3:49274286-49274305 None:intergenic 20.0%
!! ATAGGGATTAAAAATATTGA+TGG - chr1_3:49274328-49274347 None:intergenic 20.0%
!!! TGCTGATGAAAATTTTTATA+GGG - chr1_3:49274345-49274364 None:intergenic 20.0%
!!! ATGCTGATGAAAATTTTTAT+AGG - chr1_3:49274346-49274365 None:intergenic 20.0%
!! AGACTTAGACATATAATAAA+GGG - chr1_3:49274515-49274534 None:intergenic 20.0%
!! TAGACTTAGACATATAATAA+AGG - chr1_3:49274516-49274535 None:intergenic 20.0%
!! GAATTAAAATAAATACCTGT+GGG - chr1_3:49274603-49274622 None:intergenic 20.0%
!!! ATAACTACGAATATGATTTT+GGG - chr1_3:49275107-49275126 None:intergenic 20.0%
!!! TATAACTACGAATATGATTT+TGG - chr1_3:49275108-49275127 None:intergenic 20.0%
!! ATATTATCTTTCAAGCTTAA+CGG + chr1_3:49275189-49275208 Msa0122540:three_prime_UTR 20.0%
!! GAAGAAGTTTGTAAAATTAA+AGG - chr1_3:49275284-49275303 None:intergenic 20.0%
! AAAGCATGAATGAATAGTTT+GGG - chr1_3:49271341-49271360 None:intergenic 25.0%
!! AAAAGCATGAATGAATAGTT+TGG - chr1_3:49271342-49271361 None:intergenic 25.0%
! GAAAGAAAATTTAATGAGGA+AGG - chr1_3:49271415-49271434 None:intergenic 25.0%
! TTCAAATAAAGATAACGTGT+GGG - chr1_3:49271460-49271479 None:intergenic 25.0%
! ATTCAAATAAAGATAACGTG+TGG - chr1_3:49271461-49271480 None:intergenic 25.0%
! CTTAAATGAACAAGTAGTAA+TGG - chr1_3:49271546-49271565 None:intergenic 25.0%
!! ATCATTTTCATGTTCAAACA+AGG - chr1_3:49271809-49271828 None:intergenic 25.0%
! CAATTCTAATTCCATATTCT+TGG - chr1_3:49271849-49271868 None:intergenic 25.0%
! AAAAGTAAAGGAACAAAAGA+AGG - chr1_3:49271900-49271919 None:intergenic 25.0%
! AAAACAAACAAAAGAGGAAA+AGG - chr1_3:49271940-49271959 None:intergenic 25.0%
!!! TTTTCCTCTTTTGTTTGTTT+TGG + chr1_3:49271939-49271958 Msa0122540:intron 25.0%
!!! TTTCCTCTTTTGTTTGTTTT+GGG + chr1_3:49271940-49271959 Msa0122540:intron 25.0%
! ATCTATATCTATGACTTTAG+AGG + chr1_3:49272387-49272406 Msa0122540:intron 25.0%
! TGACAGAATATATAGTTAGA+TGG - chr1_3:49272591-49272610 None:intergenic 25.0%
! TTCTGTCAAAAATTTATGAG+GGG + chr1_3:49272603-49272622 Msa0122540:intron 25.0%
! TTGAATGTGTTTGAATATTG+AGG + chr1_3:49272682-49272701 Msa0122540:intron 25.0%
! TACTAATACTAAACAAATGC+AGG + chr1_3:49272788-49272807 Msa0122540:intron 25.0%
! AGCTAAACAAATTATACTAG+AGG + chr1_3:49272907-49272926 Msa0122540:CDS 25.0%
! GTGACATATCATCATTTATT+TGG + chr1_3:49273297-49273316 Msa0122540:intron 25.0%
!! ATTTGTGTATTCTAGCTAAT+TGG + chr1_3:49273341-49273360 Msa0122540:intron 25.0%
! CAGAGTAACTGAAAAATTTA+TGG - chr1_3:49273611-49273630 None:intergenic 25.0%
!!! TCATAAGAAACTTTTTTTCG+AGG + chr1_3:49273984-49274003 Msa0122540:intron 25.0%
!!! TTGTTTTAACTCTTGTTGTA+CGG - chr1_3:49274173-49274192 None:intergenic 25.0%
!! TGCTGATGGAAAAATTTTAA+GGG - chr1_3:49274376-49274395 None:intergenic 25.0%
!! ATGCTGATGGAAAAATTTTA+AGG - chr1_3:49274377-49274396 None:intergenic 25.0%
!! AATTTTTCCATCAGCATTTT+TGG + chr1_3:49274380-49274399 Msa0122540:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG - chr1_3:49274407-49274426 None:intergenic 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG - chr1_3:49274408-49274427 None:intergenic 25.0%
!! AAAGTGTGATTCTATTTTGT+AGG + chr1_3:49274440-49274459 Msa0122540:intron 25.0%
!! AAGTGTGATTCTATTTTGTA+GGG + chr1_3:49274441-49274460 Msa0122540:intron 25.0%
!! AGATGTTCACATTTTACATA+TGG + chr1_3:49274569-49274588 Msa0122540:intron 25.0%
! GGAATTAAAATAAATACCTG+TGG - chr1_3:49274604-49274623 None:intergenic 25.0%
! TAAAACATTGTAGAATAAGG+AGG - chr1_3:49274625-49274644 None:intergenic 25.0%
! GTTTGTAAAATTAAAGGATC+CGG - chr1_3:49275278-49275297 None:intergenic 25.0%
!! TCTTCTGAGAGTTATTTAAA+TGG + chr1_3:49275364-49275383 Msa0122540:three_prime_UTR 25.0%
! GAGTTATTTAAATGGAAAAG+TGG + chr1_3:49275372-49275391 Msa0122540:three_prime_UTR 25.0%
! AAAGCATGAATGAATAGTTT+GGG - chr1_3:49271341-49271360 None:intergenic 25.0%
!! AAAAGCATGAATGAATAGTT+TGG - chr1_3:49271342-49271361 None:intergenic 25.0%
! GAAAGAAAATTTAATGAGGA+AGG - chr1_3:49271415-49271434 None:intergenic 25.0%
! TTCAAATAAAGATAACGTGT+GGG - chr1_3:49271460-49271479 None:intergenic 25.0%
! ATTCAAATAAAGATAACGTG+TGG - chr1_3:49271461-49271480 None:intergenic 25.0%
! CTTAAATGAACAAGTAGTAA+TGG - chr1_3:49271546-49271565 None:intergenic 25.0%
!! ATCATTTTCATGTTCAAACA+AGG - chr1_3:49271809-49271828 None:intergenic 25.0%
! CAATTCTAATTCCATATTCT+TGG - chr1_3:49271849-49271868 None:intergenic 25.0%
! AAAAGTAAAGGAACAAAAGA+AGG - chr1_3:49271900-49271919 None:intergenic 25.0%
! AAAACAAACAAAAGAGGAAA+AGG - chr1_3:49271940-49271959 None:intergenic 25.0%
!!! TTTTCCTCTTTTGTTTGTTT+TGG + chr1_3:49271939-49271958 Msa0122540:intron 25.0%
!!! TTTCCTCTTTTGTTTGTTTT+GGG + chr1_3:49271940-49271959 Msa0122540:intron 25.0%
! ATCTATATCTATGACTTTAG+AGG + chr1_3:49272387-49272406 Msa0122540:intron 25.0%
! TGACAGAATATATAGTTAGA+TGG - chr1_3:49272591-49272610 None:intergenic 25.0%
! TTCTGTCAAAAATTTATGAG+GGG + chr1_3:49272603-49272622 Msa0122540:intron 25.0%
! TTGAATGTGTTTGAATATTG+AGG + chr1_3:49272682-49272701 Msa0122540:intron 25.0%
! TACTAATACTAAACAAATGC+AGG + chr1_3:49272788-49272807 Msa0122540:intron 25.0%
! AGCTAAACAAATTATACTAG+AGG + chr1_3:49272907-49272926 Msa0122540:CDS 25.0%
! GTGACATATCATCATTTATT+TGG + chr1_3:49273297-49273316 Msa0122540:intron 25.0%
!! ATTTGTGTATTCTAGCTAAT+TGG + chr1_3:49273341-49273360 Msa0122540:intron 25.0%
! CAGAGTAACTGAAAAATTTA+TGG - chr1_3:49273611-49273630 None:intergenic 25.0%
!!! TCATAAGAAACTTTTTTTCG+AGG + chr1_3:49273984-49274003 Msa0122540:intron 25.0%
!!! TTGTTTTAACTCTTGTTGTA+CGG - chr1_3:49274173-49274192 None:intergenic 25.0%
!! TGCTGATGGAAAAATTTTAA+GGG - chr1_3:49274376-49274395 None:intergenic 25.0%
!! ATGCTGATGGAAAAATTTTA+AGG - chr1_3:49274377-49274396 None:intergenic 25.0%
!! AATTTTTCCATCAGCATTTT+TGG + chr1_3:49274380-49274399 Msa0122540:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG - chr1_3:49274407-49274426 None:intergenic 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG - chr1_3:49274408-49274427 None:intergenic 25.0%
!! AAAGTGTGATTCTATTTTGT+AGG + chr1_3:49274440-49274459 Msa0122540:intron 25.0%
!! AAGTGTGATTCTATTTTGTA+GGG + chr1_3:49274441-49274460 Msa0122540:intron 25.0%
!! AGATGTTCACATTTTACATA+TGG + chr1_3:49274569-49274588 Msa0122540:intron 25.0%
! GGAATTAAAATAAATACCTG+TGG - chr1_3:49274604-49274623 None:intergenic 25.0%
! TAAAACATTGTAGAATAAGG+AGG - chr1_3:49274625-49274644 None:intergenic 25.0%
! GTTTGTAAAATTAAAGGATC+CGG - chr1_3:49275278-49275297 None:intergenic 25.0%
!! TCTTCTGAGAGTTATTTAAA+TGG + chr1_3:49275364-49275383 Msa0122540:three_prime_UTR 25.0%
! GAGTTATTTAAATGGAAAAG+TGG + chr1_3:49275372-49275391 Msa0122540:three_prime_UTR 25.0%
!! TTTGGATTAGTTTGGAAAGA+GGG - chr1_3:49271368-49271387 None:intergenic 30.0%
!! ATTTGGATTAGTTTGGAAAG+AGG - chr1_3:49271369-49271388 None:intergenic 30.0%
!! CAAGGAAATTTGGATTAGTT+TGG - chr1_3:49271376-49271395 None:intergenic 30.0%
GATGTGTATATATGCATGTT+GGG - chr1_3:49271513-49271532 None:intergenic 30.0%
TGATGTGTATATATGCATGT+TGG - chr1_3:49271514-49271533 None:intergenic 30.0%
AAATGAACAAGTAGTAATGG+TGG - chr1_3:49271543-49271562 None:intergenic 30.0%
TTGTTCATTTAAGCTCACAA+AGG + chr1_3:49271553-49271572 Msa0122540:five_prime_UTR 30.0%
!! TGCTTTCTCTAGAATCAAAA+TGG + chr1_3:49271634-49271653 Msa0122540:exon 30.0%
!! TTTCTCTAGAATCAAAATGG+TGG + chr1_3:49271637-49271656 Msa0122540:exon 30.0%
!! TTCTCTAGAATCAAAATGGT+GGG + chr1_3:49271638-49271657 Msa0122540:exon 30.0%
ACAAGGTCAATTAAAAACGA+AGG - chr1_3:49271792-49271811 None:intergenic 30.0%
! TATTTCTGACACCAAGAATA+TGG + chr1_3:49271835-49271854 Msa0122540:intron 30.0%
!!! TTCCTCTTTTGTTTGTTTTG+GGG + chr1_3:49271941-49271960 Msa0122540:intron 30.0%
TAAAACATCCACTGTGTATA+TGG - chr1_3:49272025-49272044 None:intergenic 30.0%
TAAAACATCCACTGTGTATA+TGG - chr1_3:49272025-49272044 None:intergenic 30.0%
ATAGTGCCAAACATTAAGAA+AGG + chr1_3:49272236-49272255 Msa0122540:intron 30.0%
AAACATTAAGAAAGGAAGCA+GGG + chr1_3:49272244-49272263 Msa0122540:intron 30.0%
TAATACTAAACAAATGCAGG+AGG + chr1_3:49272791-49272810 Msa0122540:intron 30.0%
ACATACATTAAGATGTTGAG+AGG - chr1_3:49273028-49273047 None:intergenic 30.0%
! TTGATTTTCAGAAACAATGC+TGG + chr1_3:49273185-49273204 Msa0122540:intron 30.0%
! GTTTCATTTTCTCAAGTAGA+AGG - chr1_3:49273401-49273420 None:intergenic 30.0%
! TGCCTACTAGTATTATGTTT+TGG + chr1_3:49273823-49273842 Msa0122540:intron 30.0%
! GCCTACTAGTATTATGTTTT+GGG + chr1_3:49273824-49273843 Msa0122540:intron 30.0%
! CCTACTAGTATTATGTTTTG+GGG + chr1_3:49273825-49273844 Msa0122540:intron 30.0%
!! CATTGTTGTTTATAGGAAGA+AGG + chr1_3:49274049-49274068 Msa0122540:intron 30.0%
TAACATTTGCAAACTTTCAC+CGG - chr1_3:49274706-49274725 None:intergenic 30.0%
!!! AGAGTTTTAAATAACCGTCA+TGG - chr1_3:49274729-49274748 None:intergenic 30.0%
TTTCAAAGTCTTGATTGTCT+TGG + chr1_3:49275008-49275027 Msa0122540:exon 30.0%
!! ATTATACCGACTCAACTTAT+AGG + chr1_3:49275054-49275073 Msa0122540:three_prime_UTR 30.0%
! TTATAGCCTATAAGTTGAGT+CGG - chr1_3:49275063-49275082 None:intergenic 30.0%
! AGAAGAAGGCTTCTATTTTA+GGG - chr1_3:49275150-49275169 None:intergenic 30.0%
! AAGAAGAAGGCTTCTATTTT+AGG - chr1_3:49275151-49275170 None:intergenic 30.0%
AAAGTACACACAAAAGAAGA+AGG - chr1_3:49275164-49275183 None:intergenic 30.0%
ATTCAAGTGGTTTGAACTAA+AGG - chr1_3:49275309-49275328 None:intergenic 30.0%
!! TTTGGATTAGTTTGGAAAGA+GGG - chr1_3:49271368-49271387 None:intergenic 30.0%
!! ATTTGGATTAGTTTGGAAAG+AGG - chr1_3:49271369-49271388 None:intergenic 30.0%
!! CAAGGAAATTTGGATTAGTT+TGG - chr1_3:49271376-49271395 None:intergenic 30.0%
GATGTGTATATATGCATGTT+GGG - chr1_3:49271513-49271532 None:intergenic 30.0%
TGATGTGTATATATGCATGT+TGG - chr1_3:49271514-49271533 None:intergenic 30.0%
AAATGAACAAGTAGTAATGG+TGG - chr1_3:49271543-49271562 None:intergenic 30.0%
TTGTTCATTTAAGCTCACAA+AGG + chr1_3:49271553-49271572 Msa0122540:five_prime_UTR 30.0%
!! TGCTTTCTCTAGAATCAAAA+TGG + chr1_3:49271634-49271653 Msa0122540:exon 30.0%
!! TTTCTCTAGAATCAAAATGG+TGG + chr1_3:49271637-49271656 Msa0122540:exon 30.0%
!! TTCTCTAGAATCAAAATGGT+GGG + chr1_3:49271638-49271657 Msa0122540:exon 30.0%
ACAAGGTCAATTAAAAACGA+AGG - chr1_3:49271792-49271811 None:intergenic 30.0%
! TATTTCTGACACCAAGAATA+TGG + chr1_3:49271835-49271854 Msa0122540:intron 30.0%
!!! TTCCTCTTTTGTTTGTTTTG+GGG + chr1_3:49271941-49271960 Msa0122540:intron 30.0%
TAAAACATCCACTGTGTATA+TGG - chr1_3:49272025-49272044 None:intergenic 30.0%
TAAAACATCCACTGTGTATA+TGG - chr1_3:49272025-49272044 None:intergenic 30.0%
ATAGTGCCAAACATTAAGAA+AGG + chr1_3:49272236-49272255 Msa0122540:intron 30.0%
AAACATTAAGAAAGGAAGCA+GGG + chr1_3:49272244-49272263 Msa0122540:intron 30.0%
TAATACTAAACAAATGCAGG+AGG + chr1_3:49272791-49272810 Msa0122540:intron 30.0%
ACATACATTAAGATGTTGAG+AGG - chr1_3:49273028-49273047 None:intergenic 30.0%
! TTGATTTTCAGAAACAATGC+TGG + chr1_3:49273185-49273204 Msa0122540:intron 30.0%
! GTTTCATTTTCTCAAGTAGA+AGG - chr1_3:49273401-49273420 None:intergenic 30.0%
! TGCCTACTAGTATTATGTTT+TGG + chr1_3:49273823-49273842 Msa0122540:intron 30.0%
! GCCTACTAGTATTATGTTTT+GGG + chr1_3:49273824-49273843 Msa0122540:intron 30.0%
! CCTACTAGTATTATGTTTTG+GGG + chr1_3:49273825-49273844 Msa0122540:intron 30.0%
!! CATTGTTGTTTATAGGAAGA+AGG + chr1_3:49274049-49274068 Msa0122540:intron 30.0%
TAACATTTGCAAACTTTCAC+CGG - chr1_3:49274706-49274725 None:intergenic 30.0%
!!! AGAGTTTTAAATAACCGTCA+TGG - chr1_3:49274729-49274748 None:intergenic 30.0%
TTTCAAAGTCTTGATTGTCT+TGG + chr1_3:49275008-49275027 Msa0122540:exon 30.0%
!! ATTATACCGACTCAACTTAT+AGG + chr1_3:49275054-49275073 Msa0122540:three_prime_UTR 30.0%
! TTATAGCCTATAAGTTGAGT+CGG - chr1_3:49275063-49275082 None:intergenic 30.0%
! AGAAGAAGGCTTCTATTTTA+GGG - chr1_3:49275150-49275169 None:intergenic 30.0%
! AAGAAGAAGGCTTCTATTTT+AGG - chr1_3:49275151-49275170 None:intergenic 30.0%
AAAGTACACACAAAAGAAGA+AGG - chr1_3:49275164-49275183 None:intergenic 30.0%
ATTCAAGTGGTTTGAACTAA+AGG - chr1_3:49275309-49275328 None:intergenic 30.0%
! AATGAGGAAGGTATAGTATG+AGG - chr1_3:49271403-49271422 None:intergenic 35.0%
AATCTCACTGCAATTATCAC+AGG + chr1_3:49271752-49271771 Msa0122540:CDS 35.0%
CAAACAAAAGAGGAAAAGGA+AGG - chr1_3:49271936-49271955 None:intergenic 35.0%
TACCCCAAAACAAACAAAAG+AGG - chr1_3:49271946-49271965 None:intergenic 35.0%
TCATTTGTCCATATACACAG+TGG + chr1_3:49272014-49272033 Msa0122540:intron 35.0%
TCATTTGTCCATATACACAG+TGG + chr1_3:49272014-49272033 Msa0122540:intron 35.0%
CTGCTTCCTTTCTTAATGTT+TGG - chr1_3:49272245-49272264 None:intergenic 35.0%
CAAACATTAAGAAAGGAAGC+AGG + chr1_3:49272243-49272262 Msa0122540:intron 35.0%
TCGAGTTTGCGATACATATA+GGG - chr1_3:49272647-49272666 None:intergenic 35.0%
TAACAGACTTCACTGAACAA+AGG - chr1_3:49272970-49272989 None:intergenic 35.0%
!! TTCTTACCACTGAGTTGATA+CGG + chr1_3:49273080-49273099 Msa0122540:intron 35.0%
CAGTTTGCAACAAATCATCT+TGG + chr1_3:49273254-49273273 Msa0122540:CDS 35.0%
! CATTTTCTCAAGTAGAAGGT+TGG - chr1_3:49273397-49273416 None:intergenic 35.0%
CATACCTACACTTATGAAGA+AGG + chr1_3:49273477-49273496 Msa0122540:CDS 35.0%
AATGCCTTCTTCATAAGTGT+AGG - chr1_3:49273484-49273503 None:intergenic 35.0%
!! TTATGAAGAAGGCATTCGAT+TGG + chr1_3:49273488-49273507 Msa0122540:CDS 35.0%
ATTGTAAAGGTAGTAGTCAC+TGG - chr1_3:49273570-49273589 None:intergenic 35.0%
TTTCAGTTACTCTGACAAGA+AGG + chr1_3:49273617-49273636 Msa0122540:intron 35.0%
! ATGTAGTATGTTGGCTAACT+TGG - chr1_3:49273655-49273674 None:intergenic 35.0%
CTCATTTGCATGTAGTATGT+TGG - chr1_3:49273664-49273683 None:intergenic 35.0%
CCCCAAAACATAATACTAGT+AGG - chr1_3:49273828-49273847 None:intergenic 35.0%
!! AAAGAAGAGTGTCTCATAAG+AGG - chr1_3:49274121-49274140 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG + chr1_3:49274398-49274417 Msa0122540:intron 35.0%
ATGCTTAAGGAAAATGTCAC+AGG + chr1_3:49274411-49274430 Msa0122540:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG + chr1_3:49274412-49274431 Msa0122540:intron 35.0%
GTTTGCAAATGTTACCATGA+CGG + chr1_3:49274712-49274731 Msa0122540:intron 35.0%
ACTCTTGGGAAGAAAACTTT+GGG + chr1_3:49274958-49274977 Msa0122540:CDS 35.0%
!! GAAGAAGGCTTCTATTTTAG+GGG - chr1_3:49275149-49275168 None:intergenic 35.0%
TAACGGCATTAGTTAAGTGT+TGG + chr1_3:49275206-49275225 Msa0122540:three_prime_UTR 35.0%
TCCTTCTCTATTGTTTGAAC+CGG + chr1_3:49275256-49275275 Msa0122540:three_prime_UTR 35.0%
AGAGAGTTGAGTTATTCAAG+TGG - chr1_3:49275322-49275341 None:intergenic 35.0%
! AATGAGGAAGGTATAGTATG+AGG - chr1_3:49271403-49271422 None:intergenic 35.0%
AATCTCACTGCAATTATCAC+AGG + chr1_3:49271752-49271771 Msa0122540:CDS 35.0%
CAAACAAAAGAGGAAAAGGA+AGG - chr1_3:49271936-49271955 None:intergenic 35.0%
TACCCCAAAACAAACAAAAG+AGG - chr1_3:49271946-49271965 None:intergenic 35.0%
TCATTTGTCCATATACACAG+TGG + chr1_3:49272014-49272033 Msa0122540:intron 35.0%
TCATTTGTCCATATACACAG+TGG + chr1_3:49272014-49272033 Msa0122540:intron 35.0%
CTGCTTCCTTTCTTAATGTT+TGG - chr1_3:49272245-49272264 None:intergenic 35.0%
CAAACATTAAGAAAGGAAGC+AGG + chr1_3:49272243-49272262 Msa0122540:intron 35.0%
TCGAGTTTGCGATACATATA+GGG - chr1_3:49272647-49272666 None:intergenic 35.0%
TAACAGACTTCACTGAACAA+AGG - chr1_3:49272970-49272989 None:intergenic 35.0%
!! TTCTTACCACTGAGTTGATA+CGG + chr1_3:49273080-49273099 Msa0122540:intron 35.0%
CAGTTTGCAACAAATCATCT+TGG + chr1_3:49273254-49273273 Msa0122540:CDS 35.0%
! CATTTTCTCAAGTAGAAGGT+TGG - chr1_3:49273397-49273416 None:intergenic 35.0%
CATACCTACACTTATGAAGA+AGG + chr1_3:49273477-49273496 Msa0122540:CDS 35.0%
AATGCCTTCTTCATAAGTGT+AGG - chr1_3:49273484-49273503 None:intergenic 35.0%
!! TTATGAAGAAGGCATTCGAT+TGG + chr1_3:49273488-49273507 Msa0122540:CDS 35.0%
ATTGTAAAGGTAGTAGTCAC+TGG - chr1_3:49273570-49273589 None:intergenic 35.0%
TTTCAGTTACTCTGACAAGA+AGG + chr1_3:49273617-49273636 Msa0122540:intron 35.0%
! ATGTAGTATGTTGGCTAACT+TGG - chr1_3:49273655-49273674 None:intergenic 35.0%
CTCATTTGCATGTAGTATGT+TGG - chr1_3:49273664-49273683 None:intergenic 35.0%
CCCCAAAACATAATACTAGT+AGG - chr1_3:49273828-49273847 None:intergenic 35.0%
!! AAAGAAGAGTGTCTCATAAG+AGG - chr1_3:49274121-49274140 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG + chr1_3:49274398-49274417 Msa0122540:intron 35.0%
ATGCTTAAGGAAAATGTCAC+AGG + chr1_3:49274411-49274430 Msa0122540:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG + chr1_3:49274412-49274431 Msa0122540:intron 35.0%
GTTTGCAAATGTTACCATGA+CGG + chr1_3:49274712-49274731 Msa0122540:intron 35.0%
ACTCTTGGGAAGAAAACTTT+GGG + chr1_3:49274958-49274977 Msa0122540:CDS 35.0%
!! GAAGAAGGCTTCTATTTTAG+GGG - chr1_3:49275149-49275168 None:intergenic 35.0%
TAACGGCATTAGTTAAGTGT+TGG + chr1_3:49275206-49275225 Msa0122540:three_prime_UTR 35.0%
TCCTTCTCTATTGTTTGAAC+CGG + chr1_3:49275256-49275275 Msa0122540:three_prime_UTR 35.0%
AGAGAGTTGAGTTATTCAAG+TGG - chr1_3:49275322-49275341 None:intergenic 35.0%
ATGAGGCTAGCAAGGAAATT+TGG - chr1_3:49271386-49271405 None:intergenic 40.0%
! TAGAGAAAGCACACAAACCA+AGG - chr1_3:49271625-49271644 None:intergenic 40.0%
!!! AATGGTGGGTATTTTCTCGT+TGG + chr1_3:49271652-49271671 Msa0122540:exon 40.0%
! AACTTGTTCAGCTGTTGTAG+AGG - chr1_3:49271711-49271730 None:intergenic 40.0%
ACAGCTGAACAAGTTACTGA+AGG + chr1_3:49271716-49271735 Msa0122540:CDS 40.0%
CAAGGAGTGGCAAAAAGTAA+AGG - chr1_3:49271912-49271931 None:intergenic 40.0%
AAAGAGGAAAAGGAAGGACA+AGG - chr1_3:49271930-49271949 None:intergenic 40.0%
!!! GTTTGTTTTGGGGTATCTCT+CGG + chr1_3:49271951-49271970 Msa0122540:intron 40.0%
TATGAGGGGTCAAATAAGCA+TGG + chr1_3:49272617-49272636 Msa0122540:intron 40.0%
GTCGAGTTTGCGATACATAT+AGG - chr1_3:49272648-49272667 None:intergenic 40.0%
AAGAAACATGGAGTCTGCAA+AGG + chr1_3:49272883-49272902 Msa0122540:CDS 40.0%
CAATTCCATCTTGTGTCAGT+TGG - chr1_3:49273229-49273248 None:intergenic 40.0%
! CAAGTAGAAGGTTGGTCAAA+AGG - chr1_3:49273389-49273408 None:intergenic 40.0%
TACTCTGACAAGAAGGCTTA+TGG + chr1_3:49273624-49273643 Msa0122540:CDS 40.0%
!!! AGTATTATGTTTTGGGGCCA+TGG + chr1_3:49273831-49273850 Msa0122540:intron 40.0%
!!! GTATTATGTTTTGGGGCCAT+GGG + chr1_3:49273832-49273851 Msa0122540:intron 40.0%
CGTGTAGTGTAGAGTTTAGA+TGG - chr1_3:49273893-49273912 None:intergenic 40.0%
GAGGAGTCATTATTACTCCT+GGG - chr1_3:49274102-49274121 None:intergenic 40.0%
AGAGGAGTCATTATTACTCC+TGG - chr1_3:49274103-49274122 None:intergenic 40.0%
TTAGGGACCAAAAATGCTGA+TGG - chr1_3:49274390-49274409 None:intergenic 40.0%
CCTCATACACTATTATGTCG+CGG - chr1_3:49274683-49274702 None:intergenic 40.0%
GACATAATAGTGTATGAGGC+CGG + chr1_3:49274684-49274703 Msa0122540:intron 40.0%
CTCTTCATCCAAGCTTGAAA+GGG + chr1_3:49274873-49274892 Msa0122540:CDS 40.0%
TCTTCATCCAAGCTTGAAAG+GGG + chr1_3:49274874-49274893 Msa0122540:CDS 40.0%
!!! GGTAACTGGGAAGTACTTTT+TGG + chr1_3:49274895-49274914 Msa0122540:CDS 40.0%
! ATTTGCGTCAAATGGACTCT+TGG + chr1_3:49274943-49274962 Msa0122540:CDS 40.0%
! TTTGCGTCAAATGGACTCTT+GGG + chr1_3:49274944-49274963 Msa0122540:CDS 40.0%
GACTCTTGGGAAGAAAACTT+TGG + chr1_3:49274957-49274976 Msa0122540:CDS 40.0%
TCCGGTTCAAACAATAGAGA+AGG - chr1_3:49275260-49275279 None:intergenic 40.0%
AAAGTGGATGACTTCACACA+AGG + chr1_3:49275388-49275407 Msa0122540:three_prime_UTR 40.0%
ATGAGGCTAGCAAGGAAATT+TGG - chr1_3:49271386-49271405 None:intergenic 40.0%
! TAGAGAAAGCACACAAACCA+AGG - chr1_3:49271625-49271644 None:intergenic 40.0%
!!! AATGGTGGGTATTTTCTCGT+TGG + chr1_3:49271652-49271671 Msa0122540:exon 40.0%
! AACTTGTTCAGCTGTTGTAG+AGG - chr1_3:49271711-49271730 None:intergenic 40.0%
ACAGCTGAACAAGTTACTGA+AGG + chr1_3:49271716-49271735 Msa0122540:CDS 40.0%
CAAGGAGTGGCAAAAAGTAA+AGG - chr1_3:49271912-49271931 None:intergenic 40.0%
AAAGAGGAAAAGGAAGGACA+AGG - chr1_3:49271930-49271949 None:intergenic 40.0%
!!! GTTTGTTTTGGGGTATCTCT+CGG + chr1_3:49271951-49271970 Msa0122540:intron 40.0%
TATGAGGGGTCAAATAAGCA+TGG + chr1_3:49272617-49272636 Msa0122540:intron 40.0%
GTCGAGTTTGCGATACATAT+AGG - chr1_3:49272648-49272667 None:intergenic 40.0%
AAGAAACATGGAGTCTGCAA+AGG + chr1_3:49272883-49272902 Msa0122540:CDS 40.0%
CAATTCCATCTTGTGTCAGT+TGG - chr1_3:49273229-49273248 None:intergenic 40.0%
! CAAGTAGAAGGTTGGTCAAA+AGG - chr1_3:49273389-49273408 None:intergenic 40.0%
TACTCTGACAAGAAGGCTTA+TGG + chr1_3:49273624-49273643 Msa0122540:CDS 40.0%
!!! AGTATTATGTTTTGGGGCCA+TGG + chr1_3:49273831-49273850 Msa0122540:intron 40.0%
!!! GTATTATGTTTTGGGGCCAT+GGG + chr1_3:49273832-49273851 Msa0122540:intron 40.0%
CGTGTAGTGTAGAGTTTAGA+TGG - chr1_3:49273893-49273912 None:intergenic 40.0%
GAGGAGTCATTATTACTCCT+GGG - chr1_3:49274102-49274121 None:intergenic 40.0%
AGAGGAGTCATTATTACTCC+TGG - chr1_3:49274103-49274122 None:intergenic 40.0%
TTAGGGACCAAAAATGCTGA+TGG - chr1_3:49274390-49274409 None:intergenic 40.0%
CCTCATACACTATTATGTCG+CGG - chr1_3:49274683-49274702 None:intergenic 40.0%
GACATAATAGTGTATGAGGC+CGG + chr1_3:49274684-49274703 Msa0122540:intron 40.0%
CTCTTCATCCAAGCTTGAAA+GGG + chr1_3:49274873-49274892 Msa0122540:CDS 40.0%
TCTTCATCCAAGCTTGAAAG+GGG + chr1_3:49274874-49274893 Msa0122540:CDS 40.0%
!!! GGTAACTGGGAAGTACTTTT+TGG + chr1_3:49274895-49274914 Msa0122540:CDS 40.0%
! ATTTGCGTCAAATGGACTCT+TGG + chr1_3:49274943-49274962 Msa0122540:CDS 40.0%
! TTTGCGTCAAATGGACTCTT+GGG + chr1_3:49274944-49274963 Msa0122540:CDS 40.0%
GACTCTTGGGAAGAAAACTT+TGG + chr1_3:49274957-49274976 Msa0122540:CDS 40.0%
TCCGGTTCAAACAATAGAGA+AGG - chr1_3:49275260-49275279 None:intergenic 40.0%
AAAGTGGATGACTTCACACA+AGG + chr1_3:49275388-49275407 Msa0122540:three_prime_UTR 40.0%
GGTATAGTATGAGGCTAGCA+AGG - chr1_3:49271394-49271413 None:intergenic 45.0%
! GGTATTTTCTCGTTGGTCAC+AGG + chr1_3:49271659-49271678 Msa0122540:CDS 45.0%
GTAGAGGATCCAAATCCACT+TGG - chr1_3:49271695-49271714 None:intergenic 45.0%
TGCAGACTCCATGTTTCTTG+CGG - chr1_3:49272882-49272901 None:intergenic 45.0%
TCTATGCCGTATCAACTCAG+TGG - chr1_3:49273089-49273108 None:intergenic 45.0%
CATCTTGTGTCAGTTGGAAG+GGG - chr1_3:49273223-49273242 None:intergenic 45.0%
CCATCTTGTGTCAGTTGGAA+GGG - chr1_3:49273224-49273243 None:intergenic 45.0%
TCCATCTTGTGTCAGTTGGA+AGG - chr1_3:49273225-49273244 None:intergenic 45.0%
AAACAAACCGCAAAAGCCAC+TGG + chr1_3:49273417-49273436 Msa0122540:CDS 45.0%
! CTCAATTCCAGTGGCTTTTG+CGG - chr1_3:49273427-49273446 None:intergenic 45.0%
GCAAAAGCCACTGGAATTGA+GGG + chr1_3:49273426-49273445 Msa0122540:CDS 45.0%
CATATGGAAGAATGTCCCAC+AGG + chr1_3:49274585-49274604 Msa0122540:intron 45.0%
CCGCGACATAATAGTGTATG+AGG + chr1_3:49274680-49274699 Msa0122540:intron 45.0%
GCTCTTCATCCAAGCTTGAA+AGG + chr1_3:49274872-49274891 Msa0122540:CDS 45.0%
CAAGCTTGAAAGGGGTAACT+GGG + chr1_3:49274882-49274901 Msa0122540:CDS 45.0%
CCATTTGACGCAAATGCACT+TGG - chr1_3:49274938-49274957 None:intergenic 45.0%
CCAAGTGCATTTGCGTCAAA+TGG + chr1_3:49274935-49274954 Msa0122540:CDS 45.0%
GGTATAGTATGAGGCTAGCA+AGG - chr1_3:49271394-49271413 None:intergenic 45.0%
! GGTATTTTCTCGTTGGTCAC+AGG + chr1_3:49271659-49271678 Msa0122540:CDS 45.0%
GTAGAGGATCCAAATCCACT+TGG - chr1_3:49271695-49271714 None:intergenic 45.0%
TGCAGACTCCATGTTTCTTG+CGG - chr1_3:49272882-49272901 None:intergenic 45.0%
TCTATGCCGTATCAACTCAG+TGG - chr1_3:49273089-49273108 None:intergenic 45.0%
CATCTTGTGTCAGTTGGAAG+GGG - chr1_3:49273223-49273242 None:intergenic 45.0%
CCATCTTGTGTCAGTTGGAA+GGG - chr1_3:49273224-49273243 None:intergenic 45.0%
TCCATCTTGTGTCAGTTGGA+AGG - chr1_3:49273225-49273244 None:intergenic 45.0%
AAACAAACCGCAAAAGCCAC+TGG + chr1_3:49273417-49273436 Msa0122540:CDS 45.0%
! CTCAATTCCAGTGGCTTTTG+CGG - chr1_3:49273427-49273446 None:intergenic 45.0%
GCAAAAGCCACTGGAATTGA+GGG + chr1_3:49273426-49273445 Msa0122540:CDS 45.0%
CATATGGAAGAATGTCCCAC+AGG + chr1_3:49274585-49274604 Msa0122540:intron 45.0%
CCGCGACATAATAGTGTATG+AGG + chr1_3:49274680-49274699 Msa0122540:intron 45.0%
GCTCTTCATCCAAGCTTGAA+AGG + chr1_3:49274872-49274891 Msa0122540:CDS 45.0%
CAAGCTTGAAAGGGGTAACT+GGG + chr1_3:49274882-49274901 Msa0122540:CDS 45.0%
CCATTTGACGCAAATGCACT+TGG - chr1_3:49274938-49274957 None:intergenic 45.0%
CCAAGTGCATTTGCGTCAAA+TGG + chr1_3:49274935-49274954 Msa0122540:CDS 45.0%
!!! GTATTAAATATTTTTTTTTA+AGG + chr1_3:49272495-49272514 Msa0122540:intron 5.0%
!!! GTATTAAATATTTTTTTTTA+AGG + chr1_3:49272495-49272514 Msa0122540:intron 5.0%
TTTCTCGTTGGTCACAGGCA+TGG + chr1_3:49271664-49271683 Msa0122540:CDS 50.0%
! ATGGCTGGACCAAGTGGATT+TGG + chr1_3:49271683-49271702 Msa0122540:CDS 50.0%
GGAAAAGGAAGGACAAGGAG+TGG - chr1_3:49271925-49271944 None:intergenic 50.0%
ACAAATGCAGGAGGAGCAAG+TGG + chr1_3:49272800-49272819 Msa0122540:intron 50.0%
AGGAGCAAGTGGTATAGGCT+TGG + chr1_3:49272811-49272830 Msa0122540:CDS 50.0%
! ACGAGTCTTGGCTCTTCGAA+AGG + chr1_3:49272841-49272860 Msa0122540:CDS 50.0%
CATCATCGCCGCAAGAAACA+TGG + chr1_3:49272871-49272890 Msa0122540:CDS 50.0%
CCCTTCCAACTGACACAAGA+TGG + chr1_3:49273221-49273240 Msa0122540:CDS 50.0%
CGCAAAAGCCACTGGAATTG+AGG + chr1_3:49273425-49273444 Msa0122540:CDS 50.0%
TGAGCTTTCTCGTCGCTTGA+AGG + chr1_3:49273680-49273699 Msa0122540:CDS 50.0%
!! TCCTTTTAGGTACGTGCCCA+TGG - chr1_3:49273851-49273870 None:intergenic 50.0%
TACTCCTGGGTGTACTGAGT+TGG - chr1_3:49274089-49274108 None:intergenic 50.0%
ACACTATTATGTCGCGGCTC+AGG - chr1_3:49274677-49274696 None:intergenic 50.0%
CCAGTTACCCCTTTCAAGCT+TGG - chr1_3:49274884-49274903 None:intergenic 50.0%
CCAAGCTTGAAAGGGGTAAC+TGG + chr1_3:49274881-49274900 Msa0122540:CDS 50.0%
TTTCTCGTTGGTCACAGGCA+TGG + chr1_3:49271664-49271683 Msa0122540:CDS 50.0%
! ATGGCTGGACCAAGTGGATT+TGG + chr1_3:49271683-49271702 Msa0122540:CDS 50.0%
GGAAAAGGAAGGACAAGGAG+TGG - chr1_3:49271925-49271944 None:intergenic 50.0%
ACAAATGCAGGAGGAGCAAG+TGG + chr1_3:49272800-49272819 Msa0122540:intron 50.0%
AGGAGCAAGTGGTATAGGCT+TGG + chr1_3:49272811-49272830 Msa0122540:CDS 50.0%
! ACGAGTCTTGGCTCTTCGAA+AGG + chr1_3:49272841-49272860 Msa0122540:CDS 50.0%
CATCATCGCCGCAAGAAACA+TGG + chr1_3:49272871-49272890 Msa0122540:CDS 50.0%
CCCTTCCAACTGACACAAGA+TGG + chr1_3:49273221-49273240 Msa0122540:CDS 50.0%
CGCAAAAGCCACTGGAATTG+AGG + chr1_3:49273425-49273444 Msa0122540:CDS 50.0%
TGAGCTTTCTCGTCGCTTGA+AGG + chr1_3:49273680-49273699 Msa0122540:CDS 50.0%
!! TCCTTTTAGGTACGTGCCCA+TGG - chr1_3:49273851-49273870 None:intergenic 50.0%
TACTCCTGGGTGTACTGAGT+TGG - chr1_3:49274089-49274108 None:intergenic 50.0%
ACACTATTATGTCGCGGCTC+AGG - chr1_3:49274677-49274696 None:intergenic 50.0%
CCAGTTACCCCTTTCAAGCT+TGG - chr1_3:49274884-49274903 None:intergenic 50.0%
CCAAGCTTGAAAGGGGTAAC+TGG + chr1_3:49274881-49274900 Msa0122540:CDS 50.0%
GCAGGAGGAGCAAGTGGTAT+AGG + chr1_3:49272806-49272825 Msa0122540:intron 55.0%
CTTGGAGACAGCACGAGTCT+TGG + chr1_3:49272829-49272848 Msa0122540:CDS 55.0%
GGACAACAAGTCTGCTCGAG+TGG + chr1_3:49272928-49272947 Msa0122540:CDS 55.0%
TGAGAGGAAGATCGAGAGCG+AGG - chr1_3:49273012-49273031 None:intergenic 55.0%
AAGCCACTGGAATTGAGGGC+AGG + chr1_3:49273430-49273449 Msa0122540:CDS 55.0%
GATCCTGCCCTCAATTCCAG+TGG - chr1_3:49273436-49273455 None:intergenic 55.0%
GCCATGGGCACGTACCTAAA+AGG + chr1_3:49273847-49273866 Msa0122540:intron 55.0%
ACAGCCAACTCAGTACACCC+AGG + chr1_3:49274082-49274101 Msa0122540:CDS 55.0%
GCAGGAGGAGCAAGTGGTAT+AGG + chr1_3:49272806-49272825 Msa0122540:intron 55.0%
CTTGGAGACAGCACGAGTCT+TGG + chr1_3:49272829-49272848 Msa0122540:CDS 55.0%
GGACAACAAGTCTGCTCGAG+TGG + chr1_3:49272928-49272947 Msa0122540:CDS 55.0%
TGAGAGGAAGATCGAGAGCG+AGG - chr1_3:49273012-49273031 None:intergenic 55.0%
AAGCCACTGGAATTGAGGGC+AGG + chr1_3:49273430-49273449 Msa0122540:CDS 55.0%
GATCCTGCCCTCAATTCCAG+TGG - chr1_3:49273436-49273455 None:intergenic 55.0%
GCCATGGGCACGTACCTAAA+AGG + chr1_3:49273847-49273866 Msa0122540:intron 55.0%
ACAGCCAACTCAGTACACCC+AGG + chr1_3:49274082-49274101 Msa0122540:CDS 55.0%
TCGTTGGTCACAGGCATGGC+TGG + chr1_3:49271668-49271687 Msa0122540:CDS 60.0%
ACAGGCATGGCTGGACCAAG+TGG + chr1_3:49271677-49271696 Msa0122540:CDS 60.0%
TTATGTCGCGGCTCAGGTCG+CGG - chr1_3:49274671-49274690 None:intergenic 60.0%
TCGTTGGTCACAGGCATGGC+TGG + chr1_3:49271668-49271687 Msa0122540:CDS 60.0%
ACAGGCATGGCTGGACCAAG+TGG + chr1_3:49271677-49271696 Msa0122540:CDS 60.0%
TTATGTCGCGGCTCAGGTCG+CGG - chr1_3:49274671-49274690 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 49271330 49275427 49271330 ID=Msa0122540;Name=Msa0122540
chr1_3 mRNA 49271330 49275427 49271330 ID=Msa0122540-mRNA-1;Parent=Msa0122540;Name=Msa0122540-mRNA-1;_AED=0.22;_eAED=0.22;_QI=323|0.66|0.71|1|0.83|0.85|7|406|277
chr1_3 exon 49271330 49271773 49271330 ID=Msa0122540-mRNA-1:exon:14886;Parent=Msa0122540-mRNA-1
chr1_3 exon 49272810 49272993 49272810 ID=Msa0122540-mRNA-1:exon:14887;Parent=Msa0122540-mRNA-1
chr1_3 exon 49273196 49273275 49273196 ID=Msa0122540-mRNA-1:exon:14888;Parent=Msa0122540-mRNA-1
chr1_3 exon 49273379 49273532 49273379 ID=Msa0122540-mRNA-1:exon:14889;Parent=Msa0122540-mRNA-1
chr1_3 exon 49273623 49273701 49273623 ID=Msa0122540-mRNA-1:exon:14890;Parent=Msa0122540-mRNA-1
chr1_3 exon 49274064 49274105 49274064 ID=Msa0122540-mRNA-1:exon:14891;Parent=Msa0122540-mRNA-1
chr1_3 exon 49274848 49275427 49274848 ID=Msa0122540-mRNA-1:exon:14892;Parent=Msa0122540-mRNA-1
chr1_3 five_prime_UTR 49271330 49271652 49271330 ID=Msa0122540-mRNA-1:five_prime_utr;Parent=Msa0122540-mRNA-1
chr1_3 CDS 49271653 49271773 49271653 ID=Msa0122540-mRNA-1:cds;Parent=Msa0122540-mRNA-1
chr1_3 CDS 49272810 49272993 49272810 ID=Msa0122540-mRNA-1:cds;Parent=Msa0122540-mRNA-1
chr1_3 CDS 49273196 49273275 49273196 ID=Msa0122540-mRNA-1:cds;Parent=Msa0122540-mRNA-1
chr1_3 CDS 49273379 49273532 49273379 ID=Msa0122540-mRNA-1:cds;Parent=Msa0122540-mRNA-1
chr1_3 CDS 49273623 49273701 49273623 ID=Msa0122540-mRNA-1:cds;Parent=Msa0122540-mRNA-1
chr1_3 CDS 49274064 49274105 49274064 ID=Msa0122540-mRNA-1:cds;Parent=Msa0122540-mRNA-1
chr1_3 CDS 49274848 49275021 49274848 ID=Msa0122540-mRNA-1:cds;Parent=Msa0122540-mRNA-1
chr1_3 three_prime_UTR 49275022 49275427 49275022 ID=Msa0122540-mRNA-1:three_prime_utr;Parent=Msa0122540-mRNA-1
Gene Sequence

>Msa0122540

ATGGTGGGTATTTTCTCGTTGGTCACAGGCATGGCTGGACCAAGTGGATTTGGATCCTCTACAACAGCTGAACAAGTTACTGAAGGAATTGATGCAAGCAATCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATAGGCTTGGAGACAGCACGAGTCTTGGCTCTTCGAAAGGCGCATGTCATCATCGCCGCAAGAAACATGGAGTCTGCAAAGGAAGCTAAACAAATTATACTAGAGGACAACAAGTCTGCTCGAGTGGACATAATGAAGCTCGACCTTTGTTCAGTGAAGTCTGTTAGATCAAACAATGCTGGAGTTATGTTCTGCCCCTTCCAACTGACACAAGATGGAATTGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTCCTTTTGACCAACCTTCTACTTGAGAAAATGAAACAAACCGCAAAAGCCACTGGAATTGAGGGCAGGATCATAAATCTTTCATCAATTGCTCATACCTACACTTATGAAGAAGGCATTCGATTGGATAATATCAATGATCAAATTGGTTACTCTGACAAGAAGGCTTATGGACAGTCCAAGTTAGCCAACATACTACATGCAAATGAGCTTTCTCGTCGCTTGAAGGAAGAAGGTGTCAATATCACAGCCAACTCAGTACACCCAGGAGGAGCTGCAACAACATGCTATGTTGCTCTTCATCCAAGCTTGAAAGGGGTAACTGGGAAGTACTTTTTGGATTGTAATGAGTTTCAACCAAGTGCATTTGCGTCAAATGGACTCTTGGGAAGAAAACTTTGGGATTTTAGCAACAAGTTGATCAATTCAATTTCAAAGTCTTGA

Protein sequence

>Msa0122540

MVGIFSLVTGMAGPSGFGSSTTAEQVTEGIDASNLTAIITGGASGIGLETARVLALRKAHVIIAARNMESAKEAKQIILEDNKSARVDIMKLDLCSVKSVRSNNAGVMFCPFQLTQDGIEMQFATNHLGHFLLTNLLLEKMKQTAKATGIEGRIINLSSIAHTYTYEEGIRLDNINDQIGYSDKKAYGQSKLANILHANELSRRLKEEGVNITANSVHPGGAATTCYVALHPSLKGVTGKYFLDCNEFQPSAFASNGLLGRKLWDFSNKLINSISKS*