AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667710 MtrunA17_Chr4g0006241 97.727 440 9 1 1 439 1 440 0.0 887
Msa0667710 MtrunA17_Chr7g0242601 74.049 447 107 2 1 439 1 446 0.0 687
Msa0667710 MtrunA17_Chr5g0430241 68.617 376 110 1 65 432 10 385 0.0 555
Msa0667710 MtrunA17_Chr3g0105171 71.508 358 102 0 82 439 26 383 0.0 539
Msa0667710 MtrunA17_Chr1g0175301 38.509 322 180 5 85 390 26 345 2.63e-68 222
Msa0667710 MtrunA17_Chr7g0258651 36.932 352 193 8 58 391 6 346 2.78e-65 214
Msa0667710 MtrunA17_Chr1g0210511 37.826 230 132 4 171 391 14 241 1.20e-40 146
Msa0667710 MtrunA17_Chr4g0074071 29.118 340 215 12 62 392 75 397 3.95e-33 129
Msa0667710 MtrunA17_Chr2g0305881 32.624 141 91 3 60 198 70 208 8.34e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667710 AT5G05580.1 74.208 442 102 4 1 437 1 435 0.0 680
Msa0667710 AT3G11170.1 71.493 442 117 2 1 435 1 440 0.0 649
Msa0667710 AT5G05580.2 73.506 385 90 4 1 380 1 378 0.0 586
Msa0667710 AT2G29980.1 68.766 381 119 0 59 439 2 382 0.0 556
Msa0667710 AT2G29980.2 67.153 274 90 0 59 332 2 275 2.19e-134 388
Msa0667710 AT3G12120.1 37.654 324 182 8 85 391 25 345 4.50e-67 219
Msa0667710 AT3G12120.2 37.654 324 182 8 85 391 25 345 4.50e-67 219
Msa0667710 AT4G30950.1 29.586 338 215 12 59 389 74 395 1.46e-31 125

Find 119 sgRNAs with CRISPR-Local

Find 550 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAATTACTCAAGCTTTA+TGG 0.136027 4_4:+8292416 Msa0667710:CDS
GGCACAAACAAGTCACTATT+TGG 0.140954 4_4:-8292305 None:intergenic
CTGCTCAAGGAACCATGTTT+TGG 0.171359 4_4:+8290740 Msa0667710:CDS
GGTTTGTTTGGCCACTTTAT+TGG 0.187935 4_4:+8290716 Msa0667710:CDS
ATTTCACTCTTAATATTTAT+AGG 0.191977 4_4:-8293977 None:intergenic
GCTATGGCTGCTTTGCTTGT+AGG 0.251364 4_4:+8292371 Msa0667710:CDS
TTGTGTTTGTTCTTGGTTTA+GGG 0.253549 4_4:-8290363 None:intergenic
CTTATATCACCTAATGTAAA+AGG 0.263942 4_4:-8290577 None:intergenic
GGTGCACCAGGGTCAAAATT+TGG 0.265489 4_4:-8290550 None:intergenic
AATGAAATTGTGTTTGTTCT+TGG 0.270224 4_4:-8290370 None:intergenic
GTGGAGGGTGGTGTTGGATT+TGG 0.274206 4_4:-8290244 None:intergenic
ATTGTGTTTGTTCTTGGTTT+AGG 0.275137 4_4:-8290364 None:intergenic
GCTGCTTTGCTTGTAGGTTT+AGG 0.278162 4_4:+8292377 Msa0667710:CDS
AATCTATGAGCTATGTTGTT+AGG 0.285313 4_4:+8290641 Msa0667710:CDS
GGTAAAGGACTAGATTTCTT+TGG 0.287183 4_4:-8293711 None:intergenic
GGAAGAGGTGCTTTACAAAT+TGG 0.287961 4_4:+8294017 Msa0667710:three_prime_UTR
TCTTCCTCTGCAACCCTTGA+AGG 0.290001 4_4:-8290493 None:intergenic
GTTTGTTTGGCCACTTTATT+GGG 0.291498 4_4:+8290717 Msa0667710:CDS
TCTAAAGTTGTTGTTGGATT+TGG 0.310519 4_4:-8290220 None:intergenic
AAAGGGTATCTTCAGATCTA+AGG 0.313778 4_4:+8290434 Msa0667710:CDS
AAAAGGTGGAGGGGTAGTTC+AGG 0.318396 4_4:+8290522 Msa0667710:CDS
ATGTTAATAGTTGGTTTGTT+TGG 0.321832 4_4:+8290704 Msa0667710:CDS
ACCATGGTAATTTGTCTTCA+TGG 0.346135 4_4:-8292603 None:intergenic
TCTTTGTTCTTGGTCATGAT+TGG 0.352865 4_4:+8290767 Msa0667710:CDS
CACCAGTGTCACTGACAAAA+TGG 0.361992 4_4:-8293776 None:intergenic
ACCTAAACATTGTTGGGTTA+AGG 0.363933 4_4:+8290609 Msa0667710:CDS
GCAGAGGAAGAAGAAGAAAA+AGG 0.365509 4_4:+8290505 Msa0667710:CDS
TAGATCTGAAGATACCCTTT+TGG 0.370698 4_4:-8290431 None:intergenic
GAGGCAGCTAAACCAGTTCT+TGG 0.371883 4_4:+8293672 Msa0667710:CDS
TTGTAATATCTTCCAAGAAC+TGG 0.377558 4_4:-8293684 None:intergenic
TAAACATACCATCCATGATA+TGG 0.377797 4_4:-8291415 None:intergenic
ACAACTCTCGATCGTGACTA+TGG 0.378968 4_4:+8292913 Msa0667710:CDS
ATTGAGTGATTATTATTGAA+TGG 0.380102 4_4:+8294194 Msa0667710:three_prime_UTR
CCTAAGTTAAACAGTGTTGC+GGG 0.381423 4_4:+8291364 Msa0667710:CDS
GTAGAAGAGCCACCAAGGTT+AGG 0.383284 4_4:-8293822 None:intergenic
CAGCTATACCTAAACATTGT+TGG 0.384073 4_4:+8290602 Msa0667710:CDS
TAAAGCTTGAGTAATTGAAT+TGG 0.388459 4_4:-8292413 None:intergenic
CAGGAATGGAGCTACCTTAG+AGG 0.397812 4_4:+8292883 Msa0667710:intron
GAGTTGTAAGTCCGCCTCTA+AGG 0.398628 4_4:-8292897 None:intergenic
ATTGTTGGGTTAAGGATCCT+TGG 0.399359 4_4:+8290617 Msa0667710:CDS
AAGTGGTAGTGTGGGATTTG+AGG 0.405657 4_4:-8292991 None:intergenic
CCTTTACCATTTCACCTCCT+TGG 0.406643 4_4:+8293726 Msa0667710:CDS
TCCTTAACCCAACAATGTTT+AGG 0.408115 4_4:-8290610 None:intergenic
TGAAGGGAGTTATGTCTTCA+TGG 0.410198 4_4:+8294138 Msa0667710:three_prime_UTR
TTTGGTTCTAAAGTTGTTGT+TGG 0.413285 4_4:-8290226 None:intergenic
TTGCTGCTTATGTTAATAGT+TGG 0.419399 4_4:+8290695 Msa0667710:CDS
GTAGGTTTAGGATTTGTAAT+GGG 0.420064 4_4:+8292389 Msa0667710:CDS
AGCTATACCTAAACATTGTT+GGG 0.420218 4_4:+8290603 Msa0667710:CDS
GGAATGGAATTTACCACATA+AGG 0.420459 4_4:-8292443 None:intergenic
TGTAGGTTTAGGATTTGTAA+TGG 0.421486 4_4:+8292388 Msa0667710:CDS
TAAGAGTGAGTGCTCCTTCA+AGG 0.422040 4_4:+8290479 Msa0667710:CDS
AAATCTCCAAGGAGGTGAAA+TGG 0.440919 4_4:-8293732 None:intergenic
GCTTTATGGCATTCCTTATG+TGG 0.442119 4_4:+8292430 Msa0667710:CDS
GTAAAAGGTGGTGGTGCACC+AGG 0.442471 4_4:-8290562 None:intergenic
ATGGCCATGGTGATGCAAAT+AGG 0.454958 4_4:-8292584 None:intergenic
GCACAAACAAGTCACTATTT+GGG 0.459556 4_4:-8292304 None:intergenic
ATCTATGAGCTATGTTGTTA+GGG 0.462681 4_4:+8290642 Msa0667710:CDS
TAGAAGAGCCACCAAGGTTA+GGG 0.467561 4_4:-8293821 None:intergenic
GTGTTTGAATTCAGTGGAGC+AGG 0.468799 4_4:+8292252 Msa0667710:intron
CATGCACATTGTCAAGGTTG+TGG 0.469530 4_4:+8294260 Msa0667710:three_prime_UTR
AAATTGTTTATTCTTGATGA+AGG 0.474936 4_4:+8294121 Msa0667710:three_prime_UTR
AGAGAAAATCTTCAAGAGCT+TGG 0.481339 4_4:+8291913 Msa0667710:CDS
CAAATTGGACTGTTGTAACT+TGG 0.483581 4_4:+8294032 Msa0667710:three_prime_UTR
CCCGCAACACTGTTTAACTT+AGG 0.489628 4_4:-8291364 None:intergenic
TACTCACAGCTTCAATTAAG+TGG 0.489994 4_4:-8293008 None:intergenic
TTCAGTGGAGCAGGAGTCCT+GGG 0.495423 4_4:+8292261 Msa0667710:intron
ATTCAGTGGAGCAGGAGTCC+TGG 0.502823 4_4:+8292260 Msa0667710:intron
TAACAACTTACAAGGTAGAA+AGG 0.504549 4_4:-8291989 None:intergenic
TTTAAGCAAAACAACCAAAA+GGG 0.507525 4_4:+8290417 Msa0667710:CDS
TGTTGTTAGGGATGTTGTTG+TGG 0.508034 4_4:+8290654 Msa0667710:CDS
TCCTCATAAGAAAAGGGAAG+AGG 0.511687 4_4:+8294002 Msa0667710:three_prime_UTR
TAGAAAGGATATGCAAGCAT+TGG 0.513379 4_4:-8291974 None:intergenic
AAGTGAGAACCACTCTTCCC+AGG 0.513601 4_4:-8292278 None:intergenic
CTTTGTCATGCACATTGTCA+AGG 0.515814 4_4:+8294254 Msa0667710:three_prime_UTR
CCACTTTATTGGGCTGCTCA+AGG 0.516126 4_4:+8290727 Msa0667710:CDS
GGATATGCAAGCATTGGAAA+AGG 0.516624 4_4:-8291968 None:intergenic
TTATTACCTCAACAGTATGT+TGG 0.518216 4_4:+8292345 Msa0667710:CDS
GAGTGAAACTAAAGTATGAA+AGG 0.518890 4_4:-8290279 None:intergenic
GTTCTTGGTTTAGGGTACAA+TGG 0.520187 4_4:-8290355 None:intergenic
TTAGGGTACAATGGTGGAAG+TGG 0.522625 4_4:-8290346 None:intergenic
ACCATCCATGATATGGTACT+AGG 0.523521 4_4:-8291408 None:intergenic
TCAATCCTAGTACCATATCA+TGG 0.529822 4_4:+8291403 Msa0667710:CDS
AACAGTATGTTGGACAGCTA+TGG 0.530932 4_4:+8292355 Msa0667710:CDS
TACTCATTGATTGAAGCAAA+AGG 0.534663 4_4:+8294058 Msa0667710:three_prime_UTR
AATTGTTTATTCTTGATGAA+GGG 0.541167 4_4:+8294122 Msa0667710:three_prime_UTR
AATAACATCCATCATGACAT+TGG 0.543696 4_4:+8292943 Msa0667710:CDS
TGCTCCTTCAAGGGTTGCAG+AGG 0.544094 4_4:+8290489 Msa0667710:CDS
ATTACCATGGTATCGTGGAC+AGG 0.548527 4_4:+8292615 Msa0667710:CDS
CCAAGGAGGTGAAATGGTAA+AGG 0.549624 4_4:-8293726 None:intergenic
ATGTTGAAAATGATGAATCT+TGG 0.550797 4_4:+8291578 Msa0667710:CDS
AAGAGTGAGTGCTCCTTCAA+GGG 0.557691 4_4:+8290480 Msa0667710:CDS
TCACCTAATGTAAAAGGTGG+TGG 0.560118 4_4:-8290571 None:intergenic
CTTCAATTAAGTGGTAGTGT+GGG 0.565641 4_4:-8292999 None:intergenic
TCCTAGTACCATATCATGGA+TGG 0.566773 4_4:+8291407 Msa0667710:CDS
TCCTAAGTTAAACAGTGTTG+CGG 0.570080 4_4:+8291363 Msa0667710:CDS
GCTTCAATTAAGTGGTAGTG+TGG 0.575416 4_4:-8293000 None:intergenic
TAGTTTCACTCACTCACCAA+TGG 0.576236 4_4:+8290291 Msa0667710:exon
CAAACAGACCCTAACCTTGG+TGG 0.579307 4_4:+8293813 Msa0667710:CDS
CCTTGAGCAGCCCAATAAAG+TGG 0.583743 4_4:-8290727 None:intergenic
CATGAGTTCCAATGTCATGA+TGG 0.588288 4_4:-8292951 None:intergenic
AGCAGGAGTCCTGGGAAGAG+TGG 0.590625 4_4:+8292269 Msa0667710:CDS
GTGACCTATTTGCATCACCA+TGG 0.611816 4_4:+8292580 Msa0667710:CDS
ATATCACCTAATGTAAAAGG+TGG 0.614456 4_4:-8290574 None:intergenic
TATCAAACAGACCCTAACCT+TGG 0.616620 4_4:+8293810 Msa0667710:CDS
CATATGACATATGAATTATG+TGG 0.619695 4_4:-8293898 None:intergenic
AACAAAGAGAGCCCAAAACA+TGG 0.628713 4_4:-8290752 None:intergenic
GACAAATTACCATGGTATCG+TGG 0.635203 4_4:+8292610 Msa0667710:CDS
ACATAGCTCATAGATTTCCA+AGG 0.638388 4_4:-8290634 None:intergenic
GTAATTTGTCTTCATGGCCA+TGG 0.639785 4_4:-8292597 None:intergenic
GATACCTGTCCACGATACCA+TGG 0.640882 4_4:-8292619 None:intergenic
AAATGATGAATCTTGGCACC+CGG 0.642419 4_4:+8291585 Msa0667710:CDS
CTTGGTTTAGGGTACAATGG+TGG 0.643600 4_4:-8290352 None:intergenic
AGCTGTCCAACATACTGTTG+AGG 0.647019 4_4:-8292351 None:intergenic
TTGATGTAGAAGAGCCACCA+AGG 0.677273 4_4:-8293827 None:intergenic
GAATGGAGCTACCTTAGAGG+CGG 0.680144 4_4:+8292886 Msa0667710:CDS
AGAACACATCATCAAAACCA+TGG 0.681922 4_4:+8291553 Msa0667710:CDS
TAAAAGGTGGTGGTGCACCA+GGG 0.683201 4_4:-8290561 None:intergenic
CTAAGTTAAACAGTGTTGCG+GGG 0.690117 4_4:+8291365 Msa0667710:CDS
GCCATGAAGACAAATTACCA+TGG 0.707625 4_4:+8292602 Msa0667710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATCATAATATAAAC+TGG - chr4_4:8291289-8291308 None:intergenic 10.0%
!! CTAAAAATAGATTAAAATAA+AGG - chr4_4:8292696-8292715 None:intergenic 10.0%
!! TAAATTAATAGTATTAATCA+CGG - chr4_4:8293116-8293135 None:intergenic 10.0%
!! TTAATTATCATAATATAAAC+TGG - chr4_4:8291289-8291308 None:intergenic 10.0%
!! CTAAAAATAGATTAAAATAA+AGG - chr4_4:8292696-8292715 None:intergenic 10.0%
!! TAAATTAATAGTATTAATCA+CGG - chr4_4:8293116-8293135 None:intergenic 10.0%
!!! AAATATGGTATTTTTATTCT+TGG + chr4_4:8290988-8291007 Msa0667710:intron 15.0%
!! TGAACAAAAATTAACATTAA+AGG - chr4_4:8291070-8291089 None:intergenic 15.0%
!! TTTGTTCAATTATTATTTGT+TGG + chr4_4:8291082-8291101 Msa0667710:intron 15.0%
!! AAAAAAGAGTTAAAAAAAAG+TGG - chr4_4:8292494-8292513 None:intergenic 15.0%
!! AAATTAATAGTATTAATCAC+GGG - chr4_4:8293115-8293134 None:intergenic 15.0%
!! TTAATACTATTAATTTACCT+TGG + chr4_4:8293119-8293138 Msa0667710:intron 15.0%
!! TAATACTATTAATTTACCTT+GGG + chr4_4:8293120-8293139 Msa0667710:intron 15.0%
!!! TAGTATATTTATGGTATTTT+AGG + chr4_4:8293284-8293303 Msa0667710:intron 15.0%
!! ATTTCACTCTTAATATTTAT+AGG - chr4_4:8293980-8293999 None:intergenic 15.0%
!!! AAATATGGTATTTTTATTCT+TGG + chr4_4:8290988-8291007 Msa0667710:intron 15.0%
!! TGAACAAAAATTAACATTAA+AGG - chr4_4:8291070-8291089 None:intergenic 15.0%
!! TTTGTTCAATTATTATTTGT+TGG + chr4_4:8291082-8291101 Msa0667710:intron 15.0%
!! AAAAAAGAGTTAAAAAAAAG+TGG - chr4_4:8292494-8292513 None:intergenic 15.0%
!! AAATTAATAGTATTAATCAC+GGG - chr4_4:8293115-8293134 None:intergenic 15.0%
!! TTAATACTATTAATTTACCT+TGG + chr4_4:8293119-8293138 Msa0667710:intron 15.0%
!! TAATACTATTAATTTACCTT+GGG + chr4_4:8293120-8293139 Msa0667710:intron 15.0%
!!! TAGTATATTTATGGTATTTT+AGG + chr4_4:8293284-8293303 Msa0667710:intron 15.0%
!! ATTTCACTCTTAATATTTAT+AGG - chr4_4:8293980-8293999 None:intergenic 15.0%
!! CTTAAAAATCTAATCTTTGA+AGG - chr4_4:8290403-8290422 None:intergenic 20.0%
!! GAACTGAAAATCAATATTAA+AGG - chr4_4:8290834-8290853 None:intergenic 20.0%
!! TAAAGAAAAAACAACCAAAT+TGG - chr4_4:8290874-8290893 None:intergenic 20.0%
!!! GATTTTTGCTCAATTATTAT+TGG + chr4_4:8290908-8290927 Msa0667710:intron 20.0%
!! GCTATGATAATTGATAAATA+TGG + chr4_4:8290973-8290992 Msa0667710:intron 20.0%
!! TAGGTTGTTATAAATACTAA+TGG + chr4_4:8291017-8291036 Msa0667710:intron 20.0%
!!! TTTTGATGATTTTTTTTTCC+CGG + chr4_4:8291141-8291160 Msa0667710:intron 20.0%
!! TGATAATTAATAATCATGTC+TGG + chr4_4:8291299-8291318 Msa0667710:intron 20.0%
!! AAGTTTCTTATATGAAATCA+TGG - chr4_4:8291656-8291675 None:intergenic 20.0%
!!! TTTTTAAATAACTGCTAAAG+CGG + chr4_4:8291691-8291710 Msa0667710:intron 20.0%
!!! CTATTTCACAACATTTTTAA+TGG - chr4_4:8291756-8291775 None:intergenic 20.0%
!!! AGATTTGGAATTAAATGTAA+TGG - chr4_4:8291883-8291902 None:intergenic 20.0%
!!! ATATGTTTTGCTATTAGTTA+TGG + chr4_4:8292038-8292057 Msa0667710:intron 20.0%
!!! TATTTTCAATGTTTACATGT+CGG - chr4_4:8292105-8292124 None:intergenic 20.0%
!! TTGTTAATCTTATCTAATGA+TGG + chr4_4:8292230-8292249 Msa0667710:intron 20.0%
!! AGAATTTATAAGGAAAAGAA+TGG - chr4_4:8292650-8292669 None:intergenic 20.0%
!! ATTTGATGAGAGAATTTATA+AGG - chr4_4:8292660-8292679 None:intergenic 20.0%
!! CTAAATTTATTCCAAATGAA+AGG - chr4_4:8292741-8292760 None:intergenic 20.0%
!!! AAGTTTATTTCTTGTTTATG+TGG + chr4_4:8292803-8292822 Msa0667710:intron 20.0%
!! AACAATAGAAGCTTATAATT+AGG + chr4_4:8293253-8293272 Msa0667710:intron 20.0%
!! ACAATAGAAGCTTATAATTA+GGG + chr4_4:8293254-8293273 Msa0667710:intron 20.0%
!!! AATTTGATGATATTTAAGAC+TGG + chr4_4:8293339-8293358 Msa0667710:intron 20.0%
!! TTGATGAATGAATAATTGAA+TGG + chr4_4:8293610-8293629 Msa0667710:intron 20.0%
!!! AAATTTTCCTCATAAGAAAA+GGG + chr4_4:8293996-8294015 Msa0667710:three_prime_UTR 20.0%
!! AAATTGTTTATTCTTGATGA+AGG + chr4_4:8294121-8294140 Msa0667710:three_prime_UTR 20.0%
!! AATTGTTTATTCTTGATGAA+GGG + chr4_4:8294122-8294141 Msa0667710:three_prime_UTR 20.0%
!!! AATAATCACTCAATTTTTTG+AGG - chr4_4:8294188-8294207 None:intergenic 20.0%
!! ATTGAGTGATTATTATTGAA+TGG + chr4_4:8294194-8294213 Msa0667710:three_prime_UTR 20.0%
!! CTTAAAAATCTAATCTTTGA+AGG - chr4_4:8290403-8290422 None:intergenic 20.0%
!! GAACTGAAAATCAATATTAA+AGG - chr4_4:8290834-8290853 None:intergenic 20.0%
!! TAAAGAAAAAACAACCAAAT+TGG - chr4_4:8290874-8290893 None:intergenic 20.0%
!!! GATTTTTGCTCAATTATTAT+TGG + chr4_4:8290908-8290927 Msa0667710:intron 20.0%
!! GCTATGATAATTGATAAATA+TGG + chr4_4:8290973-8290992 Msa0667710:intron 20.0%
!! TAGGTTGTTATAAATACTAA+TGG + chr4_4:8291017-8291036 Msa0667710:intron 20.0%
!!! TTTTGATGATTTTTTTTTCC+CGG + chr4_4:8291141-8291160 Msa0667710:intron 20.0%
!! TGATAATTAATAATCATGTC+TGG + chr4_4:8291299-8291318 Msa0667710:intron 20.0%
!! AAGTTTCTTATATGAAATCA+TGG - chr4_4:8291656-8291675 None:intergenic 20.0%
!!! TTTTTAAATAACTGCTAAAG+CGG + chr4_4:8291691-8291710 Msa0667710:intron 20.0%
!!! CTATTTCACAACATTTTTAA+TGG - chr4_4:8291756-8291775 None:intergenic 20.0%
!!! AGATTTGGAATTAAATGTAA+TGG - chr4_4:8291883-8291902 None:intergenic 20.0%
!!! ATATGTTTTGCTATTAGTTA+TGG + chr4_4:8292038-8292057 Msa0667710:intron 20.0%
!!! TATTTTCAATGTTTACATGT+CGG - chr4_4:8292105-8292124 None:intergenic 20.0%
!! TTGTTAATCTTATCTAATGA+TGG + chr4_4:8292230-8292249 Msa0667710:intron 20.0%
!! AGAATTTATAAGGAAAAGAA+TGG - chr4_4:8292650-8292669 None:intergenic 20.0%
!! ATTTGATGAGAGAATTTATA+AGG - chr4_4:8292660-8292679 None:intergenic 20.0%
!! CTAAATTTATTCCAAATGAA+AGG - chr4_4:8292741-8292760 None:intergenic 20.0%
!!! AAGTTTATTTCTTGTTTATG+TGG + chr4_4:8292803-8292822 Msa0667710:intron 20.0%
!! AACAATAGAAGCTTATAATT+AGG + chr4_4:8293253-8293272 Msa0667710:intron 20.0%
!! ACAATAGAAGCTTATAATTA+GGG + chr4_4:8293254-8293273 Msa0667710:intron 20.0%
!!! AATTTGATGATATTTAAGAC+TGG + chr4_4:8293339-8293358 Msa0667710:intron 20.0%
!! TTGATGAATGAATAATTGAA+TGG + chr4_4:8293610-8293629 Msa0667710:intron 20.0%
!!! AAATTTTCCTCATAAGAAAA+GGG + chr4_4:8293996-8294015 Msa0667710:three_prime_UTR 20.0%
!! AAATTGTTTATTCTTGATGA+AGG + chr4_4:8294121-8294140 Msa0667710:three_prime_UTR 20.0%
!! AATTGTTTATTCTTGATGAA+GGG + chr4_4:8294122-8294141 Msa0667710:three_prime_UTR 20.0%
!!! AATAATCACTCAATTTTTTG+AGG - chr4_4:8294188-8294207 None:intergenic 20.0%
!! ATTGAGTGATTATTATTGAA+TGG + chr4_4:8294194-8294213 Msa0667710:three_prime_UTR 20.0%
!!! ACAATGTTTTTATCAGAATG+TGG + chr4_4:8290316-8290335 Msa0667710:CDS 25.0%
! AATGAAATTGTGTTTGTTCT+TGG - chr4_4:8290373-8290392 None:intergenic 25.0%
!! TTTTAAGCAAAACAACCAAA+AGG + chr4_4:8290416-8290435 Msa0667710:CDS 25.0%
! TTTAAGCAAAACAACCAAAA+GGG + chr4_4:8290417-8290436 Msa0667710:CDS 25.0%
! TAAGGTTTAAACCAAAAACA+TGG + chr4_4:8290452-8290471 Msa0667710:CDS 25.0%
! AAGGTTTAAACCAAAAACAT+GGG + chr4_4:8290453-8290472 Msa0667710:CDS 25.0%
! CTTATATCACCTAATGTAAA+AGG - chr4_4:8290580-8290599 None:intergenic 25.0%
!!! ATGTTAATAGTTGGTTTGTT+TGG + chr4_4:8290704-8290723 Msa0667710:CDS 25.0%
!! ATTTTCAGTTCAGTTACTAT+TGG + chr4_4:8290843-8290862 Msa0667710:intron 25.0%
!! TTTTTATTCTTGGTCATGAT+AGG + chr4_4:8290998-8291017 Msa0667710:intron 25.0%
! ACATAACAGATAGACTAAAT+TGG - chr4_4:8291043-8291062 None:intergenic 25.0%
!!! TTGTTGGTTTTTTTTCTTAG+TGG + chr4_4:8291098-8291117 Msa0667710:intron 25.0%
! TATATTAACATCTTCCTATC+CGG - chr4_4:8291163-8291182 None:intergenic 25.0%
! GATAATGCATATTATATGCA+GGG + chr4_4:8291222-8291241 Msa0667710:intron 25.0%
! ATAATGCATATTATATGCAG+GGG + chr4_4:8291223-8291242 Msa0667710:intron 25.0%
!! AAGATTCATCATTTTCAACA+TGG - chr4_4:8291579-8291598 None:intergenic 25.0%
! ATGTTGAAAATGATGAATCT+TGG + chr4_4:8291578-8291597 Msa0667710:CDS 25.0%
!!! ATATTCACTGTTCTAGTTTA+TGG + chr4_4:8291615-8291634 Msa0667710:intron 25.0%
! TATCAAATAGCAGAAAATAG+AGG - chr4_4:8291823-8291842 None:intergenic 25.0%
! CAAATTCTGGTAAAATAGTT+AGG - chr4_4:8292017-8292036 None:intergenic 25.0%
! AGCAAAACATATTCAAATTC+TGG - chr4_4:8292030-8292049 None:intergenic 25.0%
!! ATAACATCTTTTCTCTCATT+TGG - chr4_4:8292329-8292348 None:intergenic 25.0%
! TAAAGCTTGAGTAATTGAAT+TGG - chr4_4:8292416-8292435 None:intergenic 25.0%
! ATTCAATTACTCAAGCTTTA+TGG + chr4_4:8292416-8292435 Msa0667710:CDS 25.0%
! GGAATAAATTTAGAAGCAAT+TGG + chr4_4:8292748-8292767 Msa0667710:intron 25.0%
!! GCTTTATCTTTCATTTTGTA+TGG + chr4_4:8292859-8292878 Msa0667710:intron 25.0%
! CGGGTATATTTGAAAAAAAT+AGG - chr4_4:8293096-8293115 None:intergenic 25.0%
!!! ACTTTAATTTTTATCTCCCA+AGG - chr4_4:8293139-8293158 None:intergenic 25.0%
! TGGGAGATAAAAATTAAAGT+TGG + chr4_4:8293139-8293158 Msa0667710:intron 25.0%
! GGGAGATAAAAATTAAAGTT+GGG + chr4_4:8293140-8293159 Msa0667710:intron 25.0%
!!! TATAAACACGAGAGTATTTT+CGG + chr4_4:8293167-8293186 Msa0667710:intron 25.0%
!! TAATGTGACTATTTTGTGTA+TGG - chr4_4:8293198-8293217 None:intergenic 25.0%
! GGACAAAAGTAGTATATTTA+TGG + chr4_4:8293275-8293294 Msa0667710:intron 25.0%
! CAAAAACAGAGTTGAAATAT+GGG - chr4_4:8293472-8293491 None:intergenic 25.0%
!! TTTTTATTAAATCTCCAAGG+AGG - chr4_4:8293743-8293762 None:intergenic 25.0%
!!! TGCTTTTTATTAAATCTCCA+AGG - chr4_4:8293746-8293765 None:intergenic 25.0%
! CATATGACATATGAATTATG+TGG - chr4_4:8293901-8293920 None:intergenic 25.0%
!! GAAATTTTCCTCATAAGAAA+AGG + chr4_4:8293995-8294014 Msa0667710:three_prime_UTR 25.0%
! ACTCTTGAAAAATACATAAG+CGG - chr4_4:8294288-8294307 None:intergenic 25.0%
!!! ACAATGTTTTTATCAGAATG+TGG + chr4_4:8290316-8290335 Msa0667710:CDS 25.0%
! AATGAAATTGTGTTTGTTCT+TGG - chr4_4:8290373-8290392 None:intergenic 25.0%
!! TTTTAAGCAAAACAACCAAA+AGG + chr4_4:8290416-8290435 Msa0667710:CDS 25.0%
! TTTAAGCAAAACAACCAAAA+GGG + chr4_4:8290417-8290436 Msa0667710:CDS 25.0%
! TAAGGTTTAAACCAAAAACA+TGG + chr4_4:8290452-8290471 Msa0667710:CDS 25.0%
! AAGGTTTAAACCAAAAACAT+GGG + chr4_4:8290453-8290472 Msa0667710:CDS 25.0%
! CTTATATCACCTAATGTAAA+AGG - chr4_4:8290580-8290599 None:intergenic 25.0%
!!! ATGTTAATAGTTGGTTTGTT+TGG + chr4_4:8290704-8290723 Msa0667710:CDS 25.0%
!! ATTTTCAGTTCAGTTACTAT+TGG + chr4_4:8290843-8290862 Msa0667710:intron 25.0%
!! TTTTTATTCTTGGTCATGAT+AGG + chr4_4:8290998-8291017 Msa0667710:intron 25.0%
! ACATAACAGATAGACTAAAT+TGG - chr4_4:8291043-8291062 None:intergenic 25.0%
!!! TTGTTGGTTTTTTTTCTTAG+TGG + chr4_4:8291098-8291117 Msa0667710:intron 25.0%
! TATATTAACATCTTCCTATC+CGG - chr4_4:8291163-8291182 None:intergenic 25.0%
! GATAATGCATATTATATGCA+GGG + chr4_4:8291222-8291241 Msa0667710:intron 25.0%
! ATAATGCATATTATATGCAG+GGG + chr4_4:8291223-8291242 Msa0667710:intron 25.0%
!! AAGATTCATCATTTTCAACA+TGG - chr4_4:8291579-8291598 None:intergenic 25.0%
! ATGTTGAAAATGATGAATCT+TGG + chr4_4:8291578-8291597 Msa0667710:CDS 25.0%
!!! ATATTCACTGTTCTAGTTTA+TGG + chr4_4:8291615-8291634 Msa0667710:intron 25.0%
! TATCAAATAGCAGAAAATAG+AGG - chr4_4:8291823-8291842 None:intergenic 25.0%
! CAAATTCTGGTAAAATAGTT+AGG - chr4_4:8292017-8292036 None:intergenic 25.0%
! AGCAAAACATATTCAAATTC+TGG - chr4_4:8292030-8292049 None:intergenic 25.0%
!! ATAACATCTTTTCTCTCATT+TGG - chr4_4:8292329-8292348 None:intergenic 25.0%
! TAAAGCTTGAGTAATTGAAT+TGG - chr4_4:8292416-8292435 None:intergenic 25.0%
! ATTCAATTACTCAAGCTTTA+TGG + chr4_4:8292416-8292435 Msa0667710:CDS 25.0%
! GGAATAAATTTAGAAGCAAT+TGG + chr4_4:8292748-8292767 Msa0667710:intron 25.0%
!! GCTTTATCTTTCATTTTGTA+TGG + chr4_4:8292859-8292878 Msa0667710:intron 25.0%
! CGGGTATATTTGAAAAAAAT+AGG - chr4_4:8293096-8293115 None:intergenic 25.0%
!!! ACTTTAATTTTTATCTCCCA+AGG - chr4_4:8293139-8293158 None:intergenic 25.0%
! TGGGAGATAAAAATTAAAGT+TGG + chr4_4:8293139-8293158 Msa0667710:intron 25.0%
! GGGAGATAAAAATTAAAGTT+GGG + chr4_4:8293140-8293159 Msa0667710:intron 25.0%
!!! TATAAACACGAGAGTATTTT+CGG + chr4_4:8293167-8293186 Msa0667710:intron 25.0%
!! TAATGTGACTATTTTGTGTA+TGG - chr4_4:8293198-8293217 None:intergenic 25.0%
! GGACAAAAGTAGTATATTTA+TGG + chr4_4:8293275-8293294 Msa0667710:intron 25.0%
! CAAAAACAGAGTTGAAATAT+GGG - chr4_4:8293472-8293491 None:intergenic 25.0%
!! TTTTTATTAAATCTCCAAGG+AGG - chr4_4:8293743-8293762 None:intergenic 25.0%
!!! TGCTTTTTATTAAATCTCCA+AGG - chr4_4:8293746-8293765 None:intergenic 25.0%
! CATATGACATATGAATTATG+TGG - chr4_4:8293901-8293920 None:intergenic 25.0%
!! GAAATTTTCCTCATAAGAAA+AGG + chr4_4:8293995-8294014 Msa0667710:three_prime_UTR 25.0%
! ACTCTTGAAAAATACATAAG+CGG - chr4_4:8294288-8294307 None:intergenic 25.0%
! TCTAAAGTTGTTGTTGGATT+TGG - chr4_4:8290223-8290242 None:intergenic 30.0%
!! TTTGGTTCTAAAGTTGTTGT+TGG - chr4_4:8290229-8290248 None:intergenic 30.0%
!!! TGAAAGGAAGAAGTTTTTTG+TGG - chr4_4:8290266-8290285 None:intergenic 30.0%
GAGTGAAACTAAAGTATGAA+AGG - chr4_4:8290282-8290301 None:intergenic 30.0%
GATAAAAACATTGTTGCCAT+TGG - chr4_4:8290310-8290329 None:intergenic 30.0%
TTGTGTTTGTTCTTGGTTTA+GGG - chr4_4:8290366-8290385 None:intergenic 30.0%
ATTGTGTTTGTTCTTGGTTT+AGG - chr4_4:8290367-8290386 None:intergenic 30.0%
! ACTCTTAATTCCCATGTTTT+TGG - chr4_4:8290466-8290485 None:intergenic 30.0%
ATATCACCTAATGTAAAAGG+TGG - chr4_4:8290577-8290596 None:intergenic 30.0%
AGCTATACCTAAACATTGTT+GGG + chr4_4:8290603-8290622 Msa0667710:CDS 30.0%
AATCTATGAGCTATGTTGTT+AGG + chr4_4:8290641-8290660 Msa0667710:CDS 30.0%
ATCTATGAGCTATGTTGTTA+GGG + chr4_4:8290642-8290661 Msa0667710:CDS 30.0%
! TTGCTGCTTATGTTAATAGT+TGG + chr4_4:8290695-8290714 Msa0667710:CDS 30.0%
!! TACTATTGGTTCAACCAATT+TGG + chr4_4:8290857-8290876 Msa0667710:intron 30.0%
TTTGCTCAATTATTATTGGC+TGG + chr4_4:8290912-8290931 Msa0667710:intron 30.0%
!!! ATGATTTTTTTTTCCCGGAT+AGG + chr4_4:8291146-8291165 Msa0667710:intron 30.0%
ATATTAACATCTTCCTATCC+GGG - chr4_4:8291162-8291181 None:intergenic 30.0%
GGATAATGCATATTATATGC+AGG + chr4_4:8291221-8291240 Msa0667710:intron 30.0%
! AATAATCATGTCTGGTGTTT+TGG + chr4_4:8291307-8291326 Msa0667710:intron 30.0%
!! TGGTGTTTTGGATATTTTAG+TGG + chr4_4:8291319-8291338 Msa0667710:intron 30.0%
!!! TTTGGATATTTTAGTGGTCA+TGG + chr4_4:8291325-8291344 Msa0667710:intron 30.0%
TAAACATACCATCCATGATA+TGG - chr4_4:8291418-8291437 None:intergenic 30.0%
AACAGTGAATATAAGCTTAC+CGG - chr4_4:8291607-8291626 None:intergenic 30.0%
TAACAACTTACAAGGTAGAA+AGG - chr4_4:8291992-8292011 None:intergenic 30.0%
GTTAGGTATAACAACTTACA+AGG - chr4_4:8292000-8292019 None:intergenic 30.0%
TTACATGCAATTACAAGTGT+CGG + chr4_4:8292145-8292164 Msa0667710:intron 30.0%
TTATTACCTCAACAGTATGT+TGG + chr4_4:8292345-8292364 Msa0667710:CDS 30.0%
! TGTAGGTTTAGGATTTGTAA+TGG + chr4_4:8292388-8292407 Msa0667710:CDS 30.0%
! GTAGGTTTAGGATTTGTAAT+GGG + chr4_4:8292389-8292408 Msa0667710:CDS 30.0%
TTCATGGTTAGAAAAAGTGA+TGG - chr4_4:8292467-8292486 None:intergenic 30.0%
!!! CACTTTTTCTAACCATGAAT+TGG + chr4_4:8292468-8292487 Msa0667710:intron 30.0%
AAAAAAAAGTGGCCAATTCA+TGG - chr4_4:8292483-8292502 None:intergenic 30.0%
!!! GCTTGGTTTTTTCTTTCTAT+CGG - chr4_4:8292719-8292738 None:intergenic 30.0%
AAAAAACCAAGCCTTTCATT+TGG + chr4_4:8292727-8292746 Msa0667710:intron 30.0%
TTTATTCCAAATGAAAGGCT+TGG - chr4_4:8292736-8292755 None:intergenic 30.0%
! ATCTTTCATTTTGTATGGAC+AGG + chr4_4:8292864-8292883 Msa0667710:intron 30.0%
AATAACATCCATCATGACAT+TGG + chr4_4:8292943-8292962 Msa0667710:CDS 30.0%
! GTTTTGCTTATAATCAAGAG+CGG - chr4_4:8293060-8293079 None:intergenic 30.0%
TTACTTATATTCAAGACCAG+AGG + chr4_4:8293381-8293400 Msa0667710:intron 30.0%
ACCACTAAATCAAGATTAGA+CGG + chr4_4:8293445-8293464 Msa0667710:intron 30.0%
CCAAAAACAGAGTTGAAATA+TGG - chr4_4:8293473-8293492 None:intergenic 30.0%
! CCATATTTCAACTCTGTTTT+TGG + chr4_4:8293470-8293489 Msa0667710:intron 30.0%
TCATCAAGAATAGTGTAAAG+AGG - chr4_4:8293597-8293616 None:intergenic 30.0%
TTGTAATATCTTCCAAGAAC+TGG - chr4_4:8293687-8293706 None:intergenic 30.0%
! TACTCATTGATTGAAGCAAA+AGG + chr4_4:8294058-8294077 Msa0667710:three_prime_UTR 30.0%
!!! GCTTATGTATTTTTCAAGAG+TGG + chr4_4:8294287-8294306 Msa0667710:three_prime_UTR 30.0%
! TCTAAAGTTGTTGTTGGATT+TGG - chr4_4:8290223-8290242 None:intergenic 30.0%
!! TTTGGTTCTAAAGTTGTTGT+TGG - chr4_4:8290229-8290248 None:intergenic 30.0%
!!! TGAAAGGAAGAAGTTTTTTG+TGG - chr4_4:8290266-8290285 None:intergenic 30.0%
GAGTGAAACTAAAGTATGAA+AGG - chr4_4:8290282-8290301 None:intergenic 30.0%
GATAAAAACATTGTTGCCAT+TGG - chr4_4:8290310-8290329 None:intergenic 30.0%
TTGTGTTTGTTCTTGGTTTA+GGG - chr4_4:8290366-8290385 None:intergenic 30.0%
ATTGTGTTTGTTCTTGGTTT+AGG - chr4_4:8290367-8290386 None:intergenic 30.0%
! ACTCTTAATTCCCATGTTTT+TGG - chr4_4:8290466-8290485 None:intergenic 30.0%
ATATCACCTAATGTAAAAGG+TGG - chr4_4:8290577-8290596 None:intergenic 30.0%
AGCTATACCTAAACATTGTT+GGG + chr4_4:8290603-8290622 Msa0667710:CDS 30.0%
AATCTATGAGCTATGTTGTT+AGG + chr4_4:8290641-8290660 Msa0667710:CDS 30.0%
ATCTATGAGCTATGTTGTTA+GGG + chr4_4:8290642-8290661 Msa0667710:CDS 30.0%
! TTGCTGCTTATGTTAATAGT+TGG + chr4_4:8290695-8290714 Msa0667710:CDS 30.0%
!! TACTATTGGTTCAACCAATT+TGG + chr4_4:8290857-8290876 Msa0667710:intron 30.0%
TTTGCTCAATTATTATTGGC+TGG + chr4_4:8290912-8290931 Msa0667710:intron 30.0%
!!! ATGATTTTTTTTTCCCGGAT+AGG + chr4_4:8291146-8291165 Msa0667710:intron 30.0%
ATATTAACATCTTCCTATCC+GGG - chr4_4:8291162-8291181 None:intergenic 30.0%
GGATAATGCATATTATATGC+AGG + chr4_4:8291221-8291240 Msa0667710:intron 30.0%
! AATAATCATGTCTGGTGTTT+TGG + chr4_4:8291307-8291326 Msa0667710:intron 30.0%
!! TGGTGTTTTGGATATTTTAG+TGG + chr4_4:8291319-8291338 Msa0667710:intron 30.0%
!!! TTTGGATATTTTAGTGGTCA+TGG + chr4_4:8291325-8291344 Msa0667710:intron 30.0%
TAAACATACCATCCATGATA+TGG - chr4_4:8291418-8291437 None:intergenic 30.0%
AACAGTGAATATAAGCTTAC+CGG - chr4_4:8291607-8291626 None:intergenic 30.0%
TAACAACTTACAAGGTAGAA+AGG - chr4_4:8291992-8292011 None:intergenic 30.0%
GTTAGGTATAACAACTTACA+AGG - chr4_4:8292000-8292019 None:intergenic 30.0%
TTACATGCAATTACAAGTGT+CGG + chr4_4:8292145-8292164 Msa0667710:intron 30.0%
TTATTACCTCAACAGTATGT+TGG + chr4_4:8292345-8292364 Msa0667710:CDS 30.0%
! TGTAGGTTTAGGATTTGTAA+TGG + chr4_4:8292388-8292407 Msa0667710:CDS 30.0%
! GTAGGTTTAGGATTTGTAAT+GGG + chr4_4:8292389-8292408 Msa0667710:CDS 30.0%
TTCATGGTTAGAAAAAGTGA+TGG - chr4_4:8292467-8292486 None:intergenic 30.0%
!!! CACTTTTTCTAACCATGAAT+TGG + chr4_4:8292468-8292487 Msa0667710:intron 30.0%
AAAAAAAAGTGGCCAATTCA+TGG - chr4_4:8292483-8292502 None:intergenic 30.0%
!!! GCTTGGTTTTTTCTTTCTAT+CGG - chr4_4:8292719-8292738 None:intergenic 30.0%
AAAAAACCAAGCCTTTCATT+TGG + chr4_4:8292727-8292746 Msa0667710:intron 30.0%
TTTATTCCAAATGAAAGGCT+TGG - chr4_4:8292736-8292755 None:intergenic 30.0%
! ATCTTTCATTTTGTATGGAC+AGG + chr4_4:8292864-8292883 Msa0667710:intron 30.0%
AATAACATCCATCATGACAT+TGG + chr4_4:8292943-8292962 Msa0667710:CDS 30.0%
! GTTTTGCTTATAATCAAGAG+CGG - chr4_4:8293060-8293079 None:intergenic 30.0%
TTACTTATATTCAAGACCAG+AGG + chr4_4:8293381-8293400 Msa0667710:intron 30.0%
ACCACTAAATCAAGATTAGA+CGG + chr4_4:8293445-8293464 Msa0667710:intron 30.0%
CCAAAAACAGAGTTGAAATA+TGG - chr4_4:8293473-8293492 None:intergenic 30.0%
! CCATATTTCAACTCTGTTTT+TGG + chr4_4:8293470-8293489 Msa0667710:intron 30.0%
TCATCAAGAATAGTGTAAAG+AGG - chr4_4:8293597-8293616 None:intergenic 30.0%
TTGTAATATCTTCCAAGAAC+TGG - chr4_4:8293687-8293706 None:intergenic 30.0%
! TACTCATTGATTGAAGCAAA+AGG + chr4_4:8294058-8294077 Msa0667710:three_prime_UTR 30.0%
!!! GCTTATGTATTTTTCAAGAG+TGG + chr4_4:8294287-8294306 Msa0667710:three_prime_UTR 30.0%
!!! AGGAAGAAGTTTTTTGTGGA+GGG - chr4_4:8290262-8290281 None:intergenic 35.0%
!!! AAGGAAGAAGTTTTTTGTGG+AGG - chr4_4:8290263-8290282 None:intergenic 35.0%
! TAGATCTGAAGATACCCTTT+TGG - chr4_4:8290434-8290453 None:intergenic 35.0%
!! AAAGGGTATCTTCAGATCTA+AGG + chr4_4:8290434-8290453 Msa0667710:CDS 35.0%
AAGAAGAAGAAAAAGGTGGA+GGG + chr4_4:8290512-8290531 Msa0667710:CDS 35.0%
!! GAATTTCCAAATTTTGACCC+TGG + chr4_4:8290544-8290563 Msa0667710:CDS 35.0%
CAGCTATACCTAAACATTGT+TGG + chr4_4:8290602-8290621 Msa0667710:CDS 35.0%
ACCTAAACATTGTTGGGTTA+AGG + chr4_4:8290609-8290628 Msa0667710:CDS 35.0%
TCCTTAACCCAACAATGTTT+AGG - chr4_4:8290613-8290632 None:intergenic 35.0%
ACATAGCTCATAGATTTCCA+AGG - chr4_4:8290637-8290656 None:intergenic 35.0%
!!! TGTTGTTGTGGTTTTTGGTT+TGG + chr4_4:8290666-8290685 Msa0667710:CDS 35.0%
! GTTTGTTTGGCCACTTTATT+GGG + chr4_4:8290717-8290736 Msa0667710:CDS 35.0%
TCTTTGTTCTTGGTCATGAT+TGG + chr4_4:8290767-8290786 Msa0667710:CDS 35.0%
!!! ATTGGCTGGTATTTTTTTCC+TGG + chr4_4:8290926-8290945 Msa0667710:intron 35.0%
TCCTAAGTTAAACAGTGTTG+CGG + chr4_4:8291363-8291382 Msa0667710:CDS 35.0%
TCAATCCTAGTACCATATCA+TGG + chr4_4:8291403-8291422 Msa0667710:CDS 35.0%
CATGGATGGTATGTTTATGT+AGG + chr4_4:8291421-8291440 Msa0667710:intron 35.0%
AGAACACATCATCAAAACCA+TGG + chr4_4:8291553-8291572 Msa0667710:CDS 35.0%
ACAGTGAATATAAGCTTACC+GGG - chr4_4:8291606-8291625 None:intergenic 35.0%
CTATAACGCTATAGTGTAGT+GGG + chr4_4:8291716-8291735 Msa0667710:intron 35.0%
TAGCAGAAAATAGAGGTTAC+AGG - chr4_4:8291816-8291835 None:intergenic 35.0%
! AAGCTCTTGAAGATTTTCTC+TGG - chr4_4:8291914-8291933 None:intergenic 35.0%
AGAGAAAATCTTCAAGAGCT+TGG + chr4_4:8291913-8291932 Msa0667710:CDS 35.0%
TAGAAAGGATATGCAAGCAT+TGG - chr4_4:8291977-8291996 None:intergenic 35.0%
GGTGTATGAATTGATCTATG+AGG + chr4_4:8292059-8292078 Msa0667710:intron 35.0%
! ATGATGGTGTTTGAATTCAG+TGG + chr4_4:8292246-8292265 Msa0667710:intron 35.0%
GCACAAACAAGTCACTATTT+GGG - chr4_4:8292307-8292326 None:intergenic 35.0%
GGAATGGAATTTACCACATA+AGG - chr4_4:8292446-8292465 None:intergenic 35.0%
! GGTTAGAAAAAGTGATGGAA+TGG - chr4_4:8292462-8292481 None:intergenic 35.0%
! ACTTGAAGCTTTTTGTCATG+TGG + chr4_4:8292548-8292567 Msa0667710:intron 35.0%
! TTTTGTCATGTGGTTGGATT+TGG + chr4_4:8292558-8292577 Msa0667710:CDS 35.0%
! ACCATGGTAATTTGTCTTCA+TGG - chr4_4:8292606-8292625 None:intergenic 35.0%
! TCATTTTGTATGGACAGGAA+TGG + chr4_4:8292869-8292888 Msa0667710:intron 35.0%
! CTTCAATTAAGTGGTAGTGT+GGG - chr4_4:8293002-8293021 None:intergenic 35.0%
TACTCACAGCTTCAATTAAG+TGG - chr4_4:8293011-8293030 None:intergenic 35.0%
CCACTAAATCAAGATTAGAC+GGG + chr4_4:8293446-8293465 Msa0667710:intron 35.0%
GGTAAAGGACTAGATTTCTT+TGG - chr4_4:8293714-8293733 None:intergenic 35.0%
!!! CTTCTCTCTTGTTTTACAAG+AGG - chr4_4:8293878-8293897 None:intergenic 35.0%
CAAATTGGACTGTTGTAACT+TGG + chr4_4:8294032-8294051 Msa0667710:three_prime_UTR 35.0%
!!! AGGAAGAAGTTTTTTGTGGA+GGG - chr4_4:8290262-8290281 None:intergenic 35.0%
!!! AAGGAAGAAGTTTTTTGTGG+AGG - chr4_4:8290263-8290282 None:intergenic 35.0%
! TAGATCTGAAGATACCCTTT+TGG - chr4_4:8290434-8290453 None:intergenic 35.0%
!! AAAGGGTATCTTCAGATCTA+AGG + chr4_4:8290434-8290453 Msa0667710:CDS 35.0%
AAGAAGAAGAAAAAGGTGGA+GGG + chr4_4:8290512-8290531 Msa0667710:CDS 35.0%
!! GAATTTCCAAATTTTGACCC+TGG + chr4_4:8290544-8290563 Msa0667710:CDS 35.0%
CAGCTATACCTAAACATTGT+TGG + chr4_4:8290602-8290621 Msa0667710:CDS 35.0%
ACCTAAACATTGTTGGGTTA+AGG + chr4_4:8290609-8290628 Msa0667710:CDS 35.0%
TCCTTAACCCAACAATGTTT+AGG - chr4_4:8290613-8290632 None:intergenic 35.0%
ACATAGCTCATAGATTTCCA+AGG - chr4_4:8290637-8290656 None:intergenic 35.0%
!!! TGTTGTTGTGGTTTTTGGTT+TGG + chr4_4:8290666-8290685 Msa0667710:CDS 35.0%
! GTTTGTTTGGCCACTTTATT+GGG + chr4_4:8290717-8290736 Msa0667710:CDS 35.0%
TCTTTGTTCTTGGTCATGAT+TGG + chr4_4:8290767-8290786 Msa0667710:CDS 35.0%
!!! ATTGGCTGGTATTTTTTTCC+TGG + chr4_4:8290926-8290945 Msa0667710:intron 35.0%
TCCTAAGTTAAACAGTGTTG+CGG + chr4_4:8291363-8291382 Msa0667710:CDS 35.0%
TCAATCCTAGTACCATATCA+TGG + chr4_4:8291403-8291422 Msa0667710:CDS 35.0%
CATGGATGGTATGTTTATGT+AGG + chr4_4:8291421-8291440 Msa0667710:intron 35.0%
AGAACACATCATCAAAACCA+TGG + chr4_4:8291553-8291572 Msa0667710:CDS 35.0%
ACAGTGAATATAAGCTTACC+GGG - chr4_4:8291606-8291625 None:intergenic 35.0%
CTATAACGCTATAGTGTAGT+GGG + chr4_4:8291716-8291735 Msa0667710:intron 35.0%
TAGCAGAAAATAGAGGTTAC+AGG - chr4_4:8291816-8291835 None:intergenic 35.0%
! AAGCTCTTGAAGATTTTCTC+TGG - chr4_4:8291914-8291933 None:intergenic 35.0%
AGAGAAAATCTTCAAGAGCT+TGG + chr4_4:8291913-8291932 Msa0667710:CDS 35.0%
TAGAAAGGATATGCAAGCAT+TGG - chr4_4:8291977-8291996 None:intergenic 35.0%
GGTGTATGAATTGATCTATG+AGG + chr4_4:8292059-8292078 Msa0667710:intron 35.0%
! ATGATGGTGTTTGAATTCAG+TGG + chr4_4:8292246-8292265 Msa0667710:intron 35.0%
GCACAAACAAGTCACTATTT+GGG - chr4_4:8292307-8292326 None:intergenic 35.0%
GGAATGGAATTTACCACATA+AGG - chr4_4:8292446-8292465 None:intergenic 35.0%
! GGTTAGAAAAAGTGATGGAA+TGG - chr4_4:8292462-8292481 None:intergenic 35.0%
! ACTTGAAGCTTTTTGTCATG+TGG + chr4_4:8292548-8292567 Msa0667710:intron 35.0%
! TTTTGTCATGTGGTTGGATT+TGG + chr4_4:8292558-8292577 Msa0667710:CDS 35.0%
! ACCATGGTAATTTGTCTTCA+TGG - chr4_4:8292606-8292625 None:intergenic 35.0%
! TCATTTTGTATGGACAGGAA+TGG + chr4_4:8292869-8292888 Msa0667710:intron 35.0%
! CTTCAATTAAGTGGTAGTGT+GGG - chr4_4:8293002-8293021 None:intergenic 35.0%
TACTCACAGCTTCAATTAAG+TGG - chr4_4:8293011-8293030 None:intergenic 35.0%
CCACTAAATCAAGATTAGAC+GGG + chr4_4:8293446-8293465 Msa0667710:intron 35.0%
GGTAAAGGACTAGATTTCTT+TGG - chr4_4:8293714-8293733 None:intergenic 35.0%
!!! CTTCTCTCTTGTTTTACAAG+AGG - chr4_4:8293878-8293897 None:intergenic 35.0%
CAAATTGGACTGTTGTAACT+TGG + chr4_4:8294032-8294051 Msa0667710:three_prime_UTR 35.0%
!!! AAGAAGTTTTTTGTGGAGGG+TGG - chr4_4:8290259-8290278 None:intergenic 40.0%
TAGTTTCACTCACTCACCAA+TGG + chr4_4:8290291-8290310 Msa0667710:exon 40.0%
! GTTCTTGGTTTAGGGTACAA+TGG - chr4_4:8290358-8290377 None:intergenic 40.0%
GCAGAGGAAGAAGAAGAAAA+AGG + chr4_4:8290505-8290524 Msa0667710:CDS 40.0%
GAGGAAGAAGAAGAAAAAGG+TGG + chr4_4:8290508-8290527 Msa0667710:CDS 40.0%
GAAGAAGAAGAAAAAGGTGG+AGG + chr4_4:8290511-8290530 Msa0667710:CDS 40.0%
AGAAGAAGAAAAAGGTGGAG+GGG + chr4_4:8290513-8290532 Msa0667710:CDS 40.0%
TCACCTAATGTAAAAGGTGG+TGG - chr4_4:8290574-8290593 None:intergenic 40.0%
ATTGTTGGGTTAAGGATCCT+TGG + chr4_4:8290617-8290636 Msa0667710:CDS 40.0%
TGTTGTTAGGGATGTTGTTG+TGG + chr4_4:8290654-8290673 Msa0667710:CDS 40.0%
! AGGGATGTTGTTGTGGTTTT+TGG + chr4_4:8290661-8290680 Msa0667710:CDS 40.0%
! GGTTTGTTTGGCCACTTTAT+TGG + chr4_4:8290716-8290735 Msa0667710:CDS 40.0%
! TGCTCAAGGAACCATGTTTT+GGG + chr4_4:8290741-8290760 Msa0667710:CDS 40.0%
AACAAAGAGAGCCCAAAACA+TGG - chr4_4:8290755-8290774 None:intergenic 40.0%
! TTTTGGGCTCTCTTTGTTCT+TGG + chr4_4:8290757-8290776 Msa0667710:CDS 40.0%
AAAAGTCAAACTTTGCCACC+AGG - chr4_4:8290947-8290966 None:intergenic 40.0%
ACCAACTGAGTTAAGCTCAT+GGG - chr4_4:8291199-8291218 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCA+TGG - chr4_4:8291200-8291219 None:intergenic 40.0%
ATGAGCTTAACTCAGTTGGT+AGG + chr4_4:8291199-8291218 Msa0667710:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG + chr4_4:8291200-8291219 Msa0667710:intron 40.0%
TGCATATTATATGCAGGGGT+CGG + chr4_4:8291227-8291246 Msa0667710:intron 40.0%
CCTAAGTTAAACAGTGTTGC+GGG + chr4_4:8291364-8291383 Msa0667710:CDS 40.0%
CTAAGTTAAACAGTGTTGCG+GGG + chr4_4:8291365-8291384 Msa0667710:CDS 40.0%
TCCTAGTACCATATCATGGA+TGG + chr4_4:8291407-8291426 Msa0667710:CDS 40.0%
ACCATCCATGATATGGTACT+AGG - chr4_4:8291411-8291430 None:intergenic 40.0%
! GTGCGTTTTACTAATTGTGC+AGG + chr4_4:8291518-8291537 Msa0667710:intron 40.0%
! CATCATTTTCAACATGGCCA+TGG - chr4_4:8291573-8291592 None:intergenic 40.0%
AAATGATGAATCTTGGCACC+CGG + chr4_4:8291585-8291604 Msa0667710:CDS 40.0%
GCTATAACGCTATAGTGTAG+TGG + chr4_4:8291715-8291734 Msa0667710:intron 40.0%
!! GGATATGCAAGCATTGGAAA+AGG - chr4_4:8291971-8291990 None:intergenic 40.0%
TGTAGCACATACACTTCAGA+TGG - chr4_4:8292194-8292213 None:intergenic 40.0%
GGCACAAACAAGTCACTATT+TGG - chr4_4:8292308-8292327 None:intergenic 40.0%
AACAGTATGTTGGACAGCTA+TGG + chr4_4:8292355-8292374 Msa0667710:CDS 40.0%
GCTTTATGGCATTCCTTATG+TGG + chr4_4:8292430-8292449 Msa0667710:CDS 40.0%
! GAAGCTTTTTGTCATGTGGT+TGG + chr4_4:8292552-8292571 Msa0667710:intron 40.0%
! GTAATTTGTCTTCATGGCCA+TGG - chr4_4:8292600-8292619 None:intergenic 40.0%
GCCATGAAGACAAATTACCA+TGG + chr4_4:8292602-8292621 Msa0667710:CDS 40.0%
GACAAATTACCATGGTATCG+TGG + chr4_4:8292610-8292629 Msa0667710:CDS 40.0%
CATGAGTTCCAATGTCATGA+TGG - chr4_4:8292954-8292973 None:intergenic 40.0%
! GCTTCAATTAAGTGGTAGTG+TGG - chr4_4:8293003-8293022 None:intergenic 40.0%
TGCTTATAATCAAGAGCGGA+CGG - chr4_4:8293056-8293075 None:intergenic 40.0%
CCCGTCTAATCTTGATTTAG+TGG - chr4_4:8293449-8293468 None:intergenic 40.0%
ACCGTCTGATCTTAATCCAA+CGG + chr4_4:8293520-8293539 Msa0667710:intron 40.0%
ACCGTTGGATTAAGATCAGA+CGG - chr4_4:8293524-8293543 None:intergenic 40.0%
TTCTTTCCTCTTGTAGACTG+AGG + chr4_4:8293653-8293672 Msa0667710:intron 40.0%
AAATCTCCAAGGAGGTGAAA+TGG - chr4_4:8293735-8293754 None:intergenic 40.0%
TATCAAACAGACCCTAACCT+TGG + chr4_4:8293810-8293829 Msa0667710:CDS 40.0%
TCCTCATAAGAAAAGGGAAG+AGG + chr4_4:8294002-8294021 Msa0667710:three_prime_UTR 40.0%
! ACCTCTTCCCTTTTCTTATG+AGG - chr4_4:8294006-8294025 None:intergenic 40.0%
!! GGAAGAGGTGCTTTACAAAT+TGG + chr4_4:8294017-8294036 Msa0667710:three_prime_UTR 40.0%
TGAAGGGAGTTATGTCTTCA+TGG + chr4_4:8294138-8294157 Msa0667710:three_prime_UTR 40.0%
CTTTGTCATGCACATTGTCA+AGG + chr4_4:8294254-8294273 Msa0667710:three_prime_UTR 40.0%
!!! AAGAAGTTTTTTGTGGAGGG+TGG - chr4_4:8290259-8290278 None:intergenic 40.0%
TAGTTTCACTCACTCACCAA+TGG + chr4_4:8290291-8290310 Msa0667710:exon 40.0%
! GTTCTTGGTTTAGGGTACAA+TGG - chr4_4:8290358-8290377 None:intergenic 40.0%
GCAGAGGAAGAAGAAGAAAA+AGG + chr4_4:8290505-8290524 Msa0667710:CDS 40.0%
GAGGAAGAAGAAGAAAAAGG+TGG + chr4_4:8290508-8290527 Msa0667710:CDS 40.0%
GAAGAAGAAGAAAAAGGTGG+AGG + chr4_4:8290511-8290530 Msa0667710:CDS 40.0%
AGAAGAAGAAAAAGGTGGAG+GGG + chr4_4:8290513-8290532 Msa0667710:CDS 40.0%
TCACCTAATGTAAAAGGTGG+TGG - chr4_4:8290574-8290593 None:intergenic 40.0%
ATTGTTGGGTTAAGGATCCT+TGG + chr4_4:8290617-8290636 Msa0667710:CDS 40.0%
TGTTGTTAGGGATGTTGTTG+TGG + chr4_4:8290654-8290673 Msa0667710:CDS 40.0%
! AGGGATGTTGTTGTGGTTTT+TGG + chr4_4:8290661-8290680 Msa0667710:CDS 40.0%
! GGTTTGTTTGGCCACTTTAT+TGG + chr4_4:8290716-8290735 Msa0667710:CDS 40.0%
! TGCTCAAGGAACCATGTTTT+GGG + chr4_4:8290741-8290760 Msa0667710:CDS 40.0%
AACAAAGAGAGCCCAAAACA+TGG - chr4_4:8290755-8290774 None:intergenic 40.0%
! TTTTGGGCTCTCTTTGTTCT+TGG + chr4_4:8290757-8290776 Msa0667710:CDS 40.0%
AAAAGTCAAACTTTGCCACC+AGG - chr4_4:8290947-8290966 None:intergenic 40.0%
ACCAACTGAGTTAAGCTCAT+GGG - chr4_4:8291199-8291218 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCA+TGG - chr4_4:8291200-8291219 None:intergenic 40.0%
ATGAGCTTAACTCAGTTGGT+AGG + chr4_4:8291199-8291218 Msa0667710:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG + chr4_4:8291200-8291219 Msa0667710:intron 40.0%
TGCATATTATATGCAGGGGT+CGG + chr4_4:8291227-8291246 Msa0667710:intron 40.0%
CCTAAGTTAAACAGTGTTGC+GGG + chr4_4:8291364-8291383 Msa0667710:CDS 40.0%
CTAAGTTAAACAGTGTTGCG+GGG + chr4_4:8291365-8291384 Msa0667710:CDS 40.0%
TCCTAGTACCATATCATGGA+TGG + chr4_4:8291407-8291426 Msa0667710:CDS 40.0%
ACCATCCATGATATGGTACT+AGG - chr4_4:8291411-8291430 None:intergenic 40.0%
! GTGCGTTTTACTAATTGTGC+AGG + chr4_4:8291518-8291537 Msa0667710:intron 40.0%
! CATCATTTTCAACATGGCCA+TGG - chr4_4:8291573-8291592 None:intergenic 40.0%
AAATGATGAATCTTGGCACC+CGG + chr4_4:8291585-8291604 Msa0667710:CDS 40.0%
GCTATAACGCTATAGTGTAG+TGG + chr4_4:8291715-8291734 Msa0667710:intron 40.0%
!! GGATATGCAAGCATTGGAAA+AGG - chr4_4:8291971-8291990 None:intergenic 40.0%
TGTAGCACATACACTTCAGA+TGG - chr4_4:8292194-8292213 None:intergenic 40.0%
GGCACAAACAAGTCACTATT+TGG - chr4_4:8292308-8292327 None:intergenic 40.0%
AACAGTATGTTGGACAGCTA+TGG + chr4_4:8292355-8292374 Msa0667710:CDS 40.0%
GCTTTATGGCATTCCTTATG+TGG + chr4_4:8292430-8292449 Msa0667710:CDS 40.0%
! GAAGCTTTTTGTCATGTGGT+TGG + chr4_4:8292552-8292571 Msa0667710:intron 40.0%
! GTAATTTGTCTTCATGGCCA+TGG - chr4_4:8292600-8292619 None:intergenic 40.0%
GCCATGAAGACAAATTACCA+TGG + chr4_4:8292602-8292621 Msa0667710:CDS 40.0%
GACAAATTACCATGGTATCG+TGG + chr4_4:8292610-8292629 Msa0667710:CDS 40.0%
CATGAGTTCCAATGTCATGA+TGG - chr4_4:8292954-8292973 None:intergenic 40.0%
! GCTTCAATTAAGTGGTAGTG+TGG - chr4_4:8293003-8293022 None:intergenic 40.0%
TGCTTATAATCAAGAGCGGA+CGG - chr4_4:8293056-8293075 None:intergenic 40.0%
CCCGTCTAATCTTGATTTAG+TGG - chr4_4:8293449-8293468 None:intergenic 40.0%
ACCGTCTGATCTTAATCCAA+CGG + chr4_4:8293520-8293539 Msa0667710:intron 40.0%
ACCGTTGGATTAAGATCAGA+CGG - chr4_4:8293524-8293543 None:intergenic 40.0%
TTCTTTCCTCTTGTAGACTG+AGG + chr4_4:8293653-8293672 Msa0667710:intron 40.0%
AAATCTCCAAGGAGGTGAAA+TGG - chr4_4:8293735-8293754 None:intergenic 40.0%
TATCAAACAGACCCTAACCT+TGG + chr4_4:8293810-8293829 Msa0667710:CDS 40.0%
TCCTCATAAGAAAAGGGAAG+AGG + chr4_4:8294002-8294021 Msa0667710:three_prime_UTR 40.0%
! ACCTCTTCCCTTTTCTTATG+AGG - chr4_4:8294006-8294025 None:intergenic 40.0%
!! GGAAGAGGTGCTTTACAAAT+TGG + chr4_4:8294017-8294036 Msa0667710:three_prime_UTR 40.0%
TGAAGGGAGTTATGTCTTCA+TGG + chr4_4:8294138-8294157 Msa0667710:three_prime_UTR 40.0%
CTTTGTCATGCACATTGTCA+AGG + chr4_4:8294254-8294273 Msa0667710:three_prime_UTR 40.0%
!!! TTTTTTGTGGAGGGTGGTGT+TGG - chr4_4:8290253-8290272 None:intergenic 45.0%
! TTAGGGTACAATGGTGGAAG+TGG - chr4_4:8290349-8290368 None:intergenic 45.0%
! CTTGGTTTAGGGTACAATGG+TGG - chr4_4:8290355-8290374 None:intergenic 45.0%
TAAGAGTGAGTGCTCCTTCA+AGG + chr4_4:8290479-8290498 Msa0667710:CDS 45.0%
AAGAGTGAGTGCTCCTTCAA+GGG + chr4_4:8290480-8290499 Msa0667710:CDS 45.0%
! GCACCACCACCTTTTACATT+AGG + chr4_4:8290568-8290587 Msa0667710:CDS 45.0%
! CTGCTCAAGGAACCATGTTT+TGG + chr4_4:8290740-8290759 Msa0667710:CDS 45.0%
!!! GGCTGGTATTTTTTTCCTGG+TGG + chr4_4:8290929-8290948 Msa0667710:intron 45.0%
CCAACTGAGTTAAGCTCATG+GGG - chr4_4:8291198-8291217 None:intergenic 45.0%
GCATATTATATGCAGGGGTC+GGG + chr4_4:8291228-8291247 Msa0667710:intron 45.0%
CATATTATATGCAGGGGTCG+GGG + chr4_4:8291229-8291248 Msa0667710:intron 45.0%
! CCCGCAACACTGTTTAACTT+AGG - chr4_4:8291367-8291386 None:intergenic 45.0%
TCTCTGGCAACTGCAAGATT+TGG - chr4_4:8291898-8291917 None:intergenic 45.0%
!! TTACATGTCGGTGTCGTGTT+TGG - chr4_4:8292093-8292112 None:intergenic 45.0%
!! AAGTGTCGGTGTTGAACACT+CGG + chr4_4:8292159-8292178 Msa0667710:intron 45.0%
GTGTTTGAATTCAGTGGAGC+AGG + chr4_4:8292252-8292271 Msa0667710:intron 45.0%
AGCTGTCCAACATACTGTTG+AGG - chr4_4:8292354-8292373 None:intergenic 45.0%
! GCTGCTTTGCTTGTAGGTTT+AGG + chr4_4:8292377-8292396 Msa0667710:CDS 45.0%
GTGACCTATTTGCATCACCA+TGG + chr4_4:8292580-8292599 Msa0667710:CDS 45.0%
! ATGGCCATGGTGATGCAAAT+AGG - chr4_4:8292587-8292606 None:intergenic 45.0%
ATTACCATGGTATCGTGGAC+AGG + chr4_4:8292615-8292634 Msa0667710:CDS 45.0%
ACAACTCTCGATCGTGACTA+TGG + chr4_4:8292913-8292932 Msa0667710:CDS 45.0%
! AAGTGGTAGTGTGGGATTTG+AGG - chr4_4:8292994-8293013 None:intergenic 45.0%
TAATCAAGAGCGGACGGATA+CGG - chr4_4:8293050-8293069 None:intergenic 45.0%
TAGAATCCAAACACTGCCTC+TGG - chr4_4:8293400-8293419 None:intergenic 45.0%
CAGTTACGCACATTTGACAC+AGG - chr4_4:8293559-8293578 None:intergenic 45.0%
CCAAGGAGGTGAAATGGTAA+AGG - chr4_4:8293729-8293748 None:intergenic 45.0%
CCTTTACCATTTCACCTCCT+TGG + chr4_4:8293726-8293745 Msa0667710:CDS 45.0%
! GACCATTTTGTCAGTGACAC+TGG + chr4_4:8293774-8293793 Msa0667710:CDS 45.0%
! CACCAGTGTCACTGACAAAA+TGG - chr4_4:8293779-8293798 None:intergenic 45.0%
TAGAAGAGCCACCAAGGTTA+GGG - chr4_4:8293824-8293843 None:intergenic 45.0%
TTGATGTAGAAGAGCCACCA+AGG - chr4_4:8293830-8293849 None:intergenic 45.0%
CATGCACATTGTCAAGGTTG+TGG + chr4_4:8294260-8294279 Msa0667710:three_prime_UTR 45.0%
!!! TTTTTTGTGGAGGGTGGTGT+TGG - chr4_4:8290253-8290272 None:intergenic 45.0%
! TTAGGGTACAATGGTGGAAG+TGG - chr4_4:8290349-8290368 None:intergenic 45.0%
! CTTGGTTTAGGGTACAATGG+TGG - chr4_4:8290355-8290374 None:intergenic 45.0%
TAAGAGTGAGTGCTCCTTCA+AGG + chr4_4:8290479-8290498 Msa0667710:CDS 45.0%
AAGAGTGAGTGCTCCTTCAA+GGG + chr4_4:8290480-8290499 Msa0667710:CDS 45.0%
! GCACCACCACCTTTTACATT+AGG + chr4_4:8290568-8290587 Msa0667710:CDS 45.0%
! CTGCTCAAGGAACCATGTTT+TGG + chr4_4:8290740-8290759 Msa0667710:CDS 45.0%
!!! GGCTGGTATTTTTTTCCTGG+TGG + chr4_4:8290929-8290948 Msa0667710:intron 45.0%
CCAACTGAGTTAAGCTCATG+GGG - chr4_4:8291198-8291217 None:intergenic 45.0%
GCATATTATATGCAGGGGTC+GGG + chr4_4:8291228-8291247 Msa0667710:intron 45.0%
CATATTATATGCAGGGGTCG+GGG + chr4_4:8291229-8291248 Msa0667710:intron 45.0%
! CCCGCAACACTGTTTAACTT+AGG - chr4_4:8291367-8291386 None:intergenic 45.0%
TCTCTGGCAACTGCAAGATT+TGG - chr4_4:8291898-8291917 None:intergenic 45.0%
!! TTACATGTCGGTGTCGTGTT+TGG - chr4_4:8292093-8292112 None:intergenic 45.0%
!! AAGTGTCGGTGTTGAACACT+CGG + chr4_4:8292159-8292178 Msa0667710:intron 45.0%
GTGTTTGAATTCAGTGGAGC+AGG + chr4_4:8292252-8292271 Msa0667710:intron 45.0%
AGCTGTCCAACATACTGTTG+AGG - chr4_4:8292354-8292373 None:intergenic 45.0%
! GCTGCTTTGCTTGTAGGTTT+AGG + chr4_4:8292377-8292396 Msa0667710:CDS 45.0%
GTGACCTATTTGCATCACCA+TGG + chr4_4:8292580-8292599 Msa0667710:CDS 45.0%
! ATGGCCATGGTGATGCAAAT+AGG - chr4_4:8292587-8292606 None:intergenic 45.0%
ATTACCATGGTATCGTGGAC+AGG + chr4_4:8292615-8292634 Msa0667710:CDS 45.0%
ACAACTCTCGATCGTGACTA+TGG + chr4_4:8292913-8292932 Msa0667710:CDS 45.0%
! AAGTGGTAGTGTGGGATTTG+AGG - chr4_4:8292994-8293013 None:intergenic 45.0%
TAATCAAGAGCGGACGGATA+CGG - chr4_4:8293050-8293069 None:intergenic 45.0%
TAGAATCCAAACACTGCCTC+TGG - chr4_4:8293400-8293419 None:intergenic 45.0%
CAGTTACGCACATTTGACAC+AGG - chr4_4:8293559-8293578 None:intergenic 45.0%
CCAAGGAGGTGAAATGGTAA+AGG - chr4_4:8293729-8293748 None:intergenic 45.0%
CCTTTACCATTTCACCTCCT+TGG + chr4_4:8293726-8293745 Msa0667710:CDS 45.0%
! GACCATTTTGTCAGTGACAC+TGG + chr4_4:8293774-8293793 Msa0667710:CDS 45.0%
! CACCAGTGTCACTGACAAAA+TGG - chr4_4:8293779-8293798 None:intergenic 45.0%
TAGAAGAGCCACCAAGGTTA+GGG - chr4_4:8293824-8293843 None:intergenic 45.0%
TTGATGTAGAAGAGCCACCA+AGG - chr4_4:8293830-8293849 None:intergenic 45.0%
CATGCACATTGTCAAGGTTG+TGG + chr4_4:8294260-8294279 Msa0667710:three_prime_UTR 45.0%
TCTTCCTCTGCAACCCTTGA+AGG - chr4_4:8290496-8290515 None:intergenic 50.0%
AAAAGGTGGAGGGGTAGTTC+AGG + chr4_4:8290522-8290541 Msa0667710:CDS 50.0%
GGTGCACCAGGGTCAAAATT+TGG - chr4_4:8290553-8290572 None:intergenic 50.0%
! TAAAAGGTGGTGGTGCACCA+GGG - chr4_4:8290564-8290583 None:intergenic 50.0%
CCTTGAGCAGCCCAATAAAG+TGG - chr4_4:8290730-8290749 None:intergenic 50.0%
CCACTTTATTGGGCTGCTCA+AGG + chr4_4:8290727-8290746 Msa0667710:CDS 50.0%
CCCCATGAGCTTAACTCAGT+TGG + chr4_4:8291195-8291214 Msa0667710:intron 50.0%
ACTATAGCACTAGCGTGCAG+CGG + chr4_4:8291778-8291797 Msa0667710:intron 50.0%
AAGTGAGAACCACTCTTCCC+AGG - chr4_4:8292281-8292300 None:intergenic 50.0%
! GCTATGGCTGCTTTGCTTGT+AGG + chr4_4:8292371-8292390 Msa0667710:CDS 50.0%
GATACCTGTCCACGATACCA+TGG - chr4_4:8292622-8292641 None:intergenic 50.0%
CAGGAATGGAGCTACCTTAG+AGG + chr4_4:8292883-8292902 Msa0667710:intron 50.0%
GAATGGAGCTACCTTAGAGG+CGG + chr4_4:8292886-8292905 Msa0667710:CDS 50.0%
GAGTTGTAAGTCCGCCTCTA+AGG - chr4_4:8292900-8292919 None:intergenic 50.0%
TCAAGACCAGAGGCAGTGTT+TGG + chr4_4:8293391-8293410 Msa0667710:intron 50.0%
AGGCACGCTATCTTAACCGT+TGG - chr4_4:8293539-8293558 None:intergenic 50.0%
TAGCTGCCTCAGTCTACAAG+AGG - chr4_4:8293662-8293681 None:intergenic 50.0%
GAGGCAGCTAAACCAGTTCT+TGG + chr4_4:8293672-8293691 Msa0667710:CDS 50.0%
CAAACAGACCCTAACCTTGG+TGG + chr4_4:8293813-8293832 Msa0667710:CDS 50.0%
GTAGAAGAGCCACCAAGGTT+AGG - chr4_4:8293825-8293844 None:intergenic 50.0%
TCTTCCTCTGCAACCCTTGA+AGG - chr4_4:8290496-8290515 None:intergenic 50.0%
AAAAGGTGGAGGGGTAGTTC+AGG + chr4_4:8290522-8290541 Msa0667710:CDS 50.0%
GGTGCACCAGGGTCAAAATT+TGG - chr4_4:8290553-8290572 None:intergenic 50.0%
! TAAAAGGTGGTGGTGCACCA+GGG - chr4_4:8290564-8290583 None:intergenic 50.0%
CCTTGAGCAGCCCAATAAAG+TGG - chr4_4:8290730-8290749 None:intergenic 50.0%
CCACTTTATTGGGCTGCTCA+AGG + chr4_4:8290727-8290746 Msa0667710:CDS 50.0%
CCCCATGAGCTTAACTCAGT+TGG + chr4_4:8291195-8291214 Msa0667710:intron 50.0%
ACTATAGCACTAGCGTGCAG+CGG + chr4_4:8291778-8291797 Msa0667710:intron 50.0%
AAGTGAGAACCACTCTTCCC+AGG - chr4_4:8292281-8292300 None:intergenic 50.0%
! GCTATGGCTGCTTTGCTTGT+AGG + chr4_4:8292371-8292390 Msa0667710:CDS 50.0%
GATACCTGTCCACGATACCA+TGG - chr4_4:8292622-8292641 None:intergenic 50.0%
CAGGAATGGAGCTACCTTAG+AGG + chr4_4:8292883-8292902 Msa0667710:intron 50.0%
GAATGGAGCTACCTTAGAGG+CGG + chr4_4:8292886-8292905 Msa0667710:CDS 50.0%
GAGTTGTAAGTCCGCCTCTA+AGG - chr4_4:8292900-8292919 None:intergenic 50.0%
TCAAGACCAGAGGCAGTGTT+TGG + chr4_4:8293391-8293410 Msa0667710:intron 50.0%
AGGCACGCTATCTTAACCGT+TGG - chr4_4:8293539-8293558 None:intergenic 50.0%
TAGCTGCCTCAGTCTACAAG+AGG - chr4_4:8293662-8293681 None:intergenic 50.0%
GAGGCAGCTAAACCAGTTCT+TGG + chr4_4:8293672-8293691 Msa0667710:CDS 50.0%
CAAACAGACCCTAACCTTGG+TGG + chr4_4:8293813-8293832 Msa0667710:CDS 50.0%
GTAGAAGAGCCACCAAGGTT+AGG - chr4_4:8293825-8293844 None:intergenic 50.0%
! GTGGAGGGTGGTGTTGGATT+TGG - chr4_4:8290247-8290266 None:intergenic 55.0%
TGCTCCTTCAAGGGTTGCAG+AGG + chr4_4:8290489-8290508 Msa0667710:CDS 55.0%
! GTAAAAGGTGGTGGTGCACC+AGG - chr4_4:8290565-8290584 None:intergenic 55.0%
ATTCAGTGGAGCAGGAGTCC+TGG + chr4_4:8292260-8292279 Msa0667710:intron 55.0%
TTCAGTGGAGCAGGAGTCCT+GGG + chr4_4:8292261-8292280 Msa0667710:intron 55.0%
! GTGGAGGGTGGTGTTGGATT+TGG - chr4_4:8290247-8290266 None:intergenic 55.0%
TGCTCCTTCAAGGGTTGCAG+AGG + chr4_4:8290489-8290508 Msa0667710:CDS 55.0%
! GTAAAAGGTGGTGGTGCACC+AGG - chr4_4:8290565-8290584 None:intergenic 55.0%
ATTCAGTGGAGCAGGAGTCC+TGG + chr4_4:8292260-8292279 Msa0667710:intron 55.0%
TTCAGTGGAGCAGGAGTCCT+GGG + chr4_4:8292261-8292280 Msa0667710:intron 55.0%
AGCAGGAGTCCTGGGAAGAG+TGG + chr4_4:8292269-8292288 Msa0667710:CDS 60.0%
AGCAGGAGTCCTGGGAAGAG+TGG + chr4_4:8292269-8292288 Msa0667710:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 8290207 8294311 8290207 ID=Msa0667710;Name=Msa0667710
chr4_4 mRNA 8290207 8294311 8290207 ID=Msa0667710-mRNA-1;Parent=Msa0667710;Name=Msa0667710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=103|1|1|1|1|1|8|457|439
chr4_4 exon 8290207 8290788 8290207 ID=Msa0667710-mRNA-1:exon:2702;Parent=Msa0667710-mRNA-1
chr4_4 exon 8291339 8291428 8291339 ID=Msa0667710-mRNA-1:exon:2703;Parent=Msa0667710-mRNA-1
chr4_4 exon 8291540 8291606 8291540 ID=Msa0667710-mRNA-1:exon:2704;Parent=Msa0667710-mRNA-1
chr4_4 exon 8291908 8292000 8291908 ID=Msa0667710-mRNA-1:exon:2705;Parent=Msa0667710-mRNA-1
chr4_4 exon 8292266 8292451 8292266 ID=Msa0667710-mRNA-1:exon:2706;Parent=Msa0667710-mRNA-1
chr4_4 exon 8292556 8292636 8292556 ID=Msa0667710-mRNA-1:exon:2707;Parent=Msa0667710-mRNA-1
chr4_4 exon 8292886 8293023 8292886 ID=Msa0667710-mRNA-1:exon:2708;Parent=Msa0667710-mRNA-1
chr4_4 exon 8293669 8294311 8293669 ID=Msa0667710-mRNA-1:exon:2709;Parent=Msa0667710-mRNA-1
chr4_4 five_prime_UTR 8290207 8290309 8290207 ID=Msa0667710-mRNA-1:five_prime_utr;Parent=Msa0667710-mRNA-1
chr4_4 CDS 8290310 8290788 8290310 ID=Msa0667710-mRNA-1:cds;Parent=Msa0667710-mRNA-1
chr4_4 CDS 8291339 8291428 8291339 ID=Msa0667710-mRNA-1:cds;Parent=Msa0667710-mRNA-1
chr4_4 CDS 8291540 8291606 8291540 ID=Msa0667710-mRNA-1:cds;Parent=Msa0667710-mRNA-1
chr4_4 CDS 8291908 8292000 8291908 ID=Msa0667710-mRNA-1:cds;Parent=Msa0667710-mRNA-1
chr4_4 CDS 8292266 8292451 8292266 ID=Msa0667710-mRNA-1:cds;Parent=Msa0667710-mRNA-1
chr4_4 CDS 8292556 8292636 8292556 ID=Msa0667710-mRNA-1:cds;Parent=Msa0667710-mRNA-1
chr4_4 CDS 8292886 8293023 8292886 ID=Msa0667710-mRNA-1:cds;Parent=Msa0667710-mRNA-1
chr4_4 CDS 8293669 8293854 8293669 ID=Msa0667710-mRNA-1:cds;Parent=Msa0667710-mRNA-1
chr4_4 three_prime_UTR 8293855 8294311 8293855 ID=Msa0667710-mRNA-1:three_prime_utr;Parent=Msa0667710-mRNA-1
Gene Sequence

>Msa0667710

ATGGCAACAATGTTTTTATCAGAATGTGGCTTAAGACCACTTCCACCATTGTACCCTAAACCAAGAACAAACACAATTTCATTACAAAAACCTTCAAAGATTAGATTTTTAAGCAAAACAACCAAAAGGGTATCTTCAGATCTAAGGTTTAAACCAAAAACATGGGAATTAAGAGTGAGTGCTCCTTCAAGGGTTGCAGAGGAAGAAGAAGAAAAAGGTGGAGGGGTAGTTCAGGAATTTCCAAATTTTGACCCTGGTGCACCACCACCTTTTACATTAGGTGATATAAGAGCAGCTATACCTAAACATTGTTGGGTTAAGGATCCTTGGAAATCTATGAGCTATGTTGTTAGGGATGTTGTTGTGGTTTTTGGTTTGGCTGTTGTTGCTGCTTATGTTAATAGTTGGTTTGTTTGGCCACTTTATTGGGCTGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGATTGTGGTCATGGAAGCTTTTCAAACAATCCTAAGTTAAACAGTGTTGCGGGGCATTTGCTGCATTCATCAATCCTAGTACCATATCATGGATGGAGAATTAGTCATAGAACACATCATCAAAACCATGGCCATGTTGAAAATGATGAATCTTGGCACCCGTTGCCAGAGAAAATCTTCAAGAGCTTGGACAATGCAACAAAAATGTTAAGATTTACAATACCTTTTCCAATGCTTGCATATCCTTTCTACCTTTGGAGCAGGAGTCCTGGGAAGAGTGGTTCTCACTTTGACCCAAATAGTGACTTGTTTGTGCCAAATGAGAGAAAAGATGTTATTACCTCAACAGTATGTTGGACAGCTATGGCTGCTTTGCTTGTAGGTTTAGGATTTGTAATGGGTCCAATTCAATTACTCAAGCTTTATGGCATTCCTTATGTGCTTTTTGTCATGTGGTTGGATTTGGTGACCTATTTGCATCACCATGGCCATGAAGACAAATTACCATGGTATCGTGGACAGGAATGGAGCTACCTTAGAGGCGGACTTACAACTCTCGATCGTGACTATGGATTGATAAATAACATCCATCATGACATTGGAACTCATGTCATTCATCACTTATTTCCTCAAATCCCACACTACCACTTAATTGAAGCTACTGAGGCAGCTAAACCAGTTCTTGGAAGATATTACAAAGAGCCAAAGAAATCTAGTCCTTTACCATTTCACCTCCTTGGAGATTTAATAAAAAGCATGAAAAAAGACCATTTTGTCAGTGACACTGGTGATATTGTTTACTATCAAACAGACCCTAACCTTGGTGGCTCTTCTACATCAAAATAA

Protein sequence

>Msa0667710

MATMFLSECGLRPLPPLYPKPRTNTISLQKPSKIRFLSKTTKRVSSDLRFKPKTWELRVSAPSRVAEEEEEKGGGVVQEFPNFDPGAPPPFTLGDIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAVVAAYVNSWFVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPKLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKIFKSLDNATKMLRFTIPFPMLAYPFYLWSRSPGKSGSHFDPNSDLFVPNERKDVITSTVCWTAMAALLVGLGFVMGPIQLLKLYGIPYVLFVMWLDLVTYLHHHGHEDKLPWYRGQEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGRYYKEPKKSSPLPFHLLGDLIKSMKKDHFVSDTGDIVYYQTDPNLGGSSTSK*