Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500740 | XP_024633829.1 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 8.82e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500740 | A0A072V1N6 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 4.21e-55 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0500740 | 0.803123 | 4.050261e-49 | -8.615850e-47 |
| Msa0020540 | Msa0500740 | 0.809328 | 1.997629e-50 | -8.615850e-47 |
| Msa0032980 | Msa0500740 | 0.806559 | 7.757658e-50 | -8.615850e-47 |
| Msa0078130 | Msa0500740 | 0.802517 | 5.402756e-49 | -8.615850e-47 |
| Msa0091350 | Msa0500740 | 0.803671 | 3.119658e-49 | -8.615850e-47 |
| Msa0110200 | Msa0500740 | 0.824169 | 9.335368e-54 | -8.615850e-47 |
| Msa0373500 | Msa0500740 | 0.813404 | 2.604619e-51 | -8.615850e-47 |
| Msa0373590 | Msa0500740 | 0.818909 | 1.532882e-52 | -8.615850e-47 |
| Msa0429970 | Msa0500740 | 0.824470 | 7.930947e-54 | -8.615850e-47 |
| Msa0468620 | Msa0500740 | 0.839670 | 1.379194e-57 | -8.615850e-47 |
| Msa0500740 | Msa0502510 | 0.806622 | 7.522542e-50 | -8.615850e-47 |
| Msa0500740 | Msa0506540 | 0.801979 | 6.973243e-49 | -8.615850e-47 |
| Msa0500740 | Msa0514020 | 0.801919 | 7.174626e-49 | -8.615850e-47 |
| Msa0500740 | Msa0514500 | 0.838153 | 3.406276e-57 | -8.615850e-47 |
| Msa0500740 | Msa0553750 | 0.804286 | 2.323030e-49 | -8.615850e-47 |
| Msa0500740 | Msa0572830 | 0.821447 | 4.017302e-53 | -8.615850e-47 |
| Msa0500740 | Msa0601720 | 0.800509 | 1.393693e-48 | -8.615850e-47 |
| Msa0500740 | Msa0607800 | 0.834168 | 3.503269e-56 | -8.615850e-47 |
| Msa0500740 | Msa0615630 | 0.800173 | 1.632146e-48 | -8.615850e-47 |
| Msa0500740 | Msa0620500 | 0.815003 | 1.154930e-51 | -8.615850e-47 |
| Msa0500740 | Msa0648040 | 0.837802 | 4.193205e-57 | -8.615850e-47 |
| Msa0500740 | Msa0657210 | 0.804351 | 2.251763e-49 | -8.615850e-47 |
| Msa0500740 | Msa0690740 | 0.838720 | 2.432319e-57 | -8.615850e-47 |
| Msa0500740 | Msa0707260 | 0.819481 | 1.135600e-52 | -8.615850e-47 |
| Msa0500740 | Msa0717900 | 0.803135 | 4.026870e-49 | -8.615850e-47 |
| Msa0500740 | Msa0754450 | 0.811606 | 6.437612e-51 | -8.615850e-47 |
| Msa0500740 | Msa0816080 | 0.807914 | 4.005504e-50 | -8.615850e-47 |
| Msa0500740 | Msa0837680 | 0.815138 | 1.077669e-51 | -8.615850e-47 |
| Msa0500740 | Msa0861440 | 0.823658 | 1.230025e-53 | -8.615850e-47 |
| Msa0500740 | Msa0879920 | 0.800327 | 1.518345e-48 | -8.615850e-47 |
| Msa0500740 | Msa0900090 | 0.801495 | 8.765109e-49 | -8.615850e-47 |
| Msa0500740 | Msa0926310 | 0.825881 | 3.679514e-54 | -8.615850e-47 |
| Msa0500740 | Msa1000780 | 0.826915 | 2.087309e-54 | -8.615850e-47 |
| Msa0500740 | Msa1081270 | 0.802419 | 5.661060e-49 | -8.615850e-47 |
| Msa0500740 | Msa1159590 | 0.802369 | 5.796363e-49 | -8.615850e-47 |
| Msa0500740 | Msa1201540 | 0.810318 | 1.223455e-50 | -8.615850e-47 |
| Msa0500740 | Msa1201780 | 0.842012 | 3.351784e-58 | -8.615850e-47 |
| Msa0500740 | Msa1215980 | 0.815330 | 9.771093e-52 | -8.615850e-47 |
| Msa0500740 | Msa1218820 | 0.825779 | 3.892250e-54 | -8.615850e-47 |
| Msa0500740 | Msa1226370 | 0.802118 | 6.528645e-49 | -8.615850e-47 |
| Msa0500740 | Msa1254540 | 0.807075 | 6.033649e-50 | -8.615850e-47 |
| Msa0500740 | Msa1294280 | 0.815799 | 7.680530e-52 | -8.615850e-47 |
| Msa0500740 | Msa1294790 | 0.808154 | 3.560481e-50 | -8.615850e-47 |
| Msa0500740 | Msa1332950 | 0.823417 | 1.401005e-53 | -8.615850e-47 |
| Msa0500740 | Msa1339170 | 0.805008 | 1.642171e-49 | -8.615850e-47 |
| Msa0500740 | Msa1381470 | 0.802951 | 4.396216e-49 | -8.615850e-47 |
| Msa0500740 | Msa1387440 | 0.801998 | 6.910992e-49 | -8.615850e-47 |
| Msa0500740 | Msa1393560 | 0.836183 | 1.086577e-56 | -8.615850e-47 |
| Msa0500740 | Msa1399190 | 0.839147 | 1.885112e-57 | -8.615850e-47 |
| Msa0500740 | Msa1426320 | 0.828207 | 1.021891e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500740 | MtrunA17_Chr3g0133791 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 1.26e-58 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500740 | AT5G42700.1 | 47.312 | 93 | 48 | 1 | 1 | 92 | 2 | 94 | 6.97e-15 | 67.4 |
| Msa0500740 | AT3G19184.2 | 53.571 | 84 | 35 | 3 | 1 | 81 | 1 | 83 | 9.44e-12 | 59.3 |
| Msa0500740 | AT3G19184.1 | 53.571 | 84 | 35 | 3 | 1 | 81 | 1 | 83 | 1.03e-11 | 59.3 |
Find 24 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGAAATTCTATTTCT+AGG | 0.204642 | 3_4:-41294517 | None:intergenic |
| ACAACGAGCTCTTTCTTGAT+AGG | 0.331075 | 3_4:-41294331 | None:intergenic |
| TCTCTCTACTCAAATCAAAA+TGG | 0.365878 | 3_4:-41294094 | None:intergenic |
| ACTCAAAATCAAAATCAAAA+TGG | 0.367777 | 3_4:+41294156 | Msa0500740:exon |
| TTACAGACTTCTTTGTAAAC+AGG | 0.370188 | 3_4:-41294391 | None:intergenic |
| CTTGATAGGGGTGCGAGGTT+TGG | 0.379420 | 3_4:-41294317 | None:intergenic |
| CTCGTTGTTGTTCGAAGATC+CGG | 0.408143 | 3_4:+41294346 | Msa0500740:CDS |
| TACCTAGAAATAGAATTTCA+AGG | 0.423170 | 3_4:+41294515 | Msa0500740:CDS |
| AGAGAGTCGCCGGAAAAGAA+TGG | 0.454260 | 3_4:+41294201 | Msa0500740:CDS |
| CAACGAGCTCTTTCTTGATA+GGG | 0.456259 | 3_4:-41294330 | None:intergenic |
| GGAAGAAAATCAAAAGAGAA+TGG | 0.470843 | 3_4:+41294222 | Msa0500740:CDS |
| GTGAAGTGATTGAGAGAGCT+TGG | 0.490518 | 3_4:-41294260 | None:intergenic |
| ACTACACAGAGCTGAGAACT+TGG | 0.499295 | 3_4:+41294126 | Msa0500740:five_prime_UTR |
| GTAAACAGGAGCAGGCATAT+TGG | 0.504680 | 3_4:-41294377 | None:intergenic |
| GGTGCGAGGTTTGGAAGGTG+AGG | 0.511953 | 3_4:-41294308 | None:intergenic |
| ACTTCTTTGTAAACAGGAGC+AGG | 0.521856 | 3_4:-41294385 | None:intergenic |
| AGGCATATTGGCGACACGAC+CGG | 0.537317 | 3_4:-41294365 | None:intergenic |
| GTGCGAGGTTTGGAAGGTGA+GGG | 0.543398 | 3_4:-41294307 | None:intergenic |
| ATAGGGGTGCGAGGTTTGGA+AGG | 0.572029 | 3_4:-41294313 | None:intergenic |
| AACGAGCTCTTTCTTGATAG+GGG | 0.578112 | 3_4:-41294329 | None:intergenic |
| CATCATACGAAGAGAGTCGC+CGG | 0.603151 | 3_4:+41294191 | Msa0500740:CDS |
| CAAAATCAAAATCAAAATGG+TGG | 0.614271 | 3_4:+41294159 | Msa0500740:exon |
| GAGTGGAATGGGAAACGCAA+CGG | 0.634670 | 3_4:+41294053 | None:intergenic |
| TCTTTCTTGATAGGGGTGCG+AGG | 0.664811 | 3_4:-41294322 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTATAATTTTTTTCAAT+AGG | - | chr3_4:41295116-41295135 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr3_4:41295366-41295385 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr3_4:41295367-41295386 | None:intergenic | 10.0% |
| !!! | TTTGTATAATTTTTTTCAAT+AGG | - | chr3_4:41295116-41295135 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr3_4:41295366-41295385 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr3_4:41295367-41295386 | None:intergenic | 10.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr3_4:41295301-41295320 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr3_4:41295302-41295321 | None:intergenic | 15.0% |
| !! | AAAGTGAAATATATTGTATT+GGG | - | chr3_4:41295342-41295361 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr3_4:41295365-41295384 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr3_4:41295301-41295320 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr3_4:41295302-41295321 | None:intergenic | 15.0% |
| !! | AAAGTGAAATATATTGTATT+GGG | - | chr3_4:41295342-41295361 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr3_4:41295365-41295384 | None:intergenic | 15.0% |
| !! | ACTCAAAATCAAAATCAAAA+TGG | + | chr3_4:41294156-41294175 | Msa0500740:exon | 20.0% |
| !!! | TCTATTTCTAGGTATTTTAA+CGG | - | chr3_4:41294509-41294528 | None:intergenic | 20.0% |
| !!! | AATCTTCTACAACTAAATTT+TGG | - | chr3_4:41294688-41294707 | None:intergenic | 20.0% |
| !! | TATGTGTCATAAAAAAAAAG+TGG | - | chr3_4:41294754-41294773 | None:intergenic | 20.0% |
| !! | AAATTCACAATGATAATAGT+TGG | - | chr3_4:41294817-41294836 | None:intergenic | 20.0% |
| !! | TGAATTTCATAAAACGAAAT+CGG | + | chr3_4:41294830-41294849 | Msa0500740:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr3_4:41295232-41295251 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr3_4:41295268-41295287 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3_4:41295269-41295288 | None:intergenic | 20.0% |
| !! | GAAAGTGAAATATATTGTAT+TGG | - | chr3_4:41295343-41295362 | None:intergenic | 20.0% |
| !! | ACTCAAAATCAAAATCAAAA+TGG | + | chr3_4:41294156-41294175 | Msa0500740:exon | 20.0% |
| !!! | TCTATTTCTAGGTATTTTAA+CGG | - | chr3_4:41294509-41294528 | None:intergenic | 20.0% |
| !!! | AATCTTCTACAACTAAATTT+TGG | - | chr3_4:41294688-41294707 | None:intergenic | 20.0% |
| !! | TATGTGTCATAAAAAAAAAG+TGG | - | chr3_4:41294754-41294773 | None:intergenic | 20.0% |
| !! | AAATTCACAATGATAATAGT+TGG | - | chr3_4:41294817-41294836 | None:intergenic | 20.0% |
| !! | TGAATTTCATAAAACGAAAT+CGG | + | chr3_4:41294830-41294849 | Msa0500740:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr3_4:41295232-41295251 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr3_4:41295268-41295287 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3_4:41295269-41295288 | None:intergenic | 20.0% |
| !! | GAAAGTGAAATATATTGTAT+TGG | - | chr3_4:41295343-41295362 | None:intergenic | 20.0% |
| ! | CAAAATCAAAATCAAAATGG+TGG | + | chr3_4:41294159-41294178 | Msa0500740:exon | 25.0% |
| ! | AGTAATAGAGAAAGATGAAA+TGG | - | chr3_4:41294439-41294458 | None:intergenic | 25.0% |
| ! | TACCTAGAAATAGAATTTCA+AGG | + | chr3_4:41294515-41294534 | Msa0500740:CDS | 25.0% |
| !! | AACCTTGAAATTCTATTTCT+AGG | - | chr3_4:41294520-41294539 | None:intergenic | 25.0% |
| ! | GATGGAAATGAAAAATGATA+AGG | + | chr3_4:41294942-41294961 | Msa0500740:intron | 25.0% |
| !! | CAGTGAAAGTTTTCATTAAA+TGG | + | chr3_4:41295079-41295098 | Msa0500740:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr3_4:41295233-41295252 | None:intergenic | 25.0% |
| !!! | CATTGATTTTGTTATTCTGT+AGG | + | chr3_4:41295508-41295527 | Msa0500740:intron | 25.0% |
| ! | CAAAATCAAAATCAAAATGG+TGG | + | chr3_4:41294159-41294178 | Msa0500740:exon | 25.0% |
| ! | AGTAATAGAGAAAGATGAAA+TGG | - | chr3_4:41294439-41294458 | None:intergenic | 25.0% |
| ! | TACCTAGAAATAGAATTTCA+AGG | + | chr3_4:41294515-41294534 | Msa0500740:CDS | 25.0% |
| !! | AACCTTGAAATTCTATTTCT+AGG | - | chr3_4:41294520-41294539 | None:intergenic | 25.0% |
| ! | GATGGAAATGAAAAATGATA+AGG | + | chr3_4:41294942-41294961 | Msa0500740:intron | 25.0% |
| !! | CAGTGAAAGTTTTCATTAAA+TGG | + | chr3_4:41295079-41295098 | Msa0500740:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr3_4:41295233-41295252 | None:intergenic | 25.0% |
| !!! | CATTGATTTTGTTATTCTGT+AGG | + | chr3_4:41295508-41295527 | Msa0500740:intron | 25.0% |
| TCTCTCTACTCAAATCAAAA+TGG | - | chr3_4:41294097-41294116 | None:intergenic | 30.0% | |
| ! | GATTTTCTTCCATTCTTTTC+CGG | - | chr3_4:41294213-41294232 | None:intergenic | 30.0% |
| GGAAGAAAATCAAAAGAGAA+TGG | + | chr3_4:41294222-41294241 | Msa0500740:CDS | 30.0% | |
| TTACAGACTTCTTTGTAAAC+AGG | - | chr3_4:41294394-41294413 | None:intergenic | 30.0% | |
| AAAGATGAAATGGTGAATGT+GGG | - | chr3_4:41294429-41294448 | None:intergenic | 30.0% | |
| !!! | CACAATAGTGTTTTAGGAAA+CGG | - | chr3_4:41294897-41294916 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr3_4:41295254-41295273 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr3_4:41295255-41295274 | None:intergenic | 30.0% |
| AGCCAAGATGTCAAATAAAT+TGG | + | chr3_4:41295401-41295420 | Msa0500740:intron | 30.0% | |
| GCCAAGATGTCAAATAAATT+GGG | + | chr3_4:41295402-41295421 | Msa0500740:intron | 30.0% | |
| TCCCAATTTATTTGACATCT+TGG | - | chr3_4:41295406-41295425 | None:intergenic | 30.0% | |
| AGATGTCAAATAAATTGGGA+CGG | + | chr3_4:41295406-41295425 | Msa0500740:intron | 30.0% | |
| TCTCTCTACTCAAATCAAAA+TGG | - | chr3_4:41294097-41294116 | None:intergenic | 30.0% | |
| ! | GATTTTCTTCCATTCTTTTC+CGG | - | chr3_4:41294213-41294232 | None:intergenic | 30.0% |
| GGAAGAAAATCAAAAGAGAA+TGG | + | chr3_4:41294222-41294241 | Msa0500740:CDS | 30.0% | |
| TTACAGACTTCTTTGTAAAC+AGG | - | chr3_4:41294394-41294413 | None:intergenic | 30.0% | |
| AAAGATGAAATGGTGAATGT+GGG | - | chr3_4:41294429-41294448 | None:intergenic | 30.0% | |
| !!! | CACAATAGTGTTTTAGGAAA+CGG | - | chr3_4:41294897-41294916 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr3_4:41295254-41295273 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr3_4:41295255-41295274 | None:intergenic | 30.0% |
| AGCCAAGATGTCAAATAAAT+TGG | + | chr3_4:41295401-41295420 | Msa0500740:intron | 30.0% | |
| GCCAAGATGTCAAATAAATT+GGG | + | chr3_4:41295402-41295421 | Msa0500740:intron | 30.0% | |
| TCCCAATTTATTTGACATCT+TGG | - | chr3_4:41295406-41295425 | None:intergenic | 30.0% | |
| AGATGTCAAATAAATTGGGA+CGG | + | chr3_4:41295406-41295425 | Msa0500740:intron | 30.0% | |
| GAAAGATGAAATGGTGAATG+TGG | - | chr3_4:41294430-41294449 | None:intergenic | 35.0% | |
| ! | AAGGTTTGTTCTTTCTTCTG+TGG | + | chr3_4:41294534-41294553 | Msa0500740:intron | 35.0% |
| !!! | TGTTTTAGGAAACGGTGAAA+AGG | - | chr3_4:41294889-41294908 | None:intergenic | 35.0% |
| ! | GTGAGTCACAATAGTGTTTT+AGG | - | chr3_4:41294903-41294922 | None:intergenic | 35.0% |
| ACCAACTTGCACATAAATGA+TGG | + | chr3_4:41294924-41294943 | Msa0500740:intron | 35.0% | |
| TCCATCATTTATGTGCAAGT+TGG | - | chr3_4:41294928-41294947 | None:intergenic | 35.0% | |
| GAAAATGGGTCAGTTATTCT+GGG | - | chr3_4:41295218-41295237 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+TGG | - | chr3_4:41295219-41295238 | None:intergenic | 35.0% | |
| GAAAGATGAAATGGTGAATG+TGG | - | chr3_4:41294430-41294449 | None:intergenic | 35.0% | |
| ! | AAGGTTTGTTCTTTCTTCTG+TGG | + | chr3_4:41294534-41294553 | Msa0500740:intron | 35.0% |
| !!! | TGTTTTAGGAAACGGTGAAA+AGG | - | chr3_4:41294889-41294908 | None:intergenic | 35.0% |
| ! | GTGAGTCACAATAGTGTTTT+AGG | - | chr3_4:41294903-41294922 | None:intergenic | 35.0% |
| ACCAACTTGCACATAAATGA+TGG | + | chr3_4:41294924-41294943 | Msa0500740:intron | 35.0% | |
| TCCATCATTTATGTGCAAGT+TGG | - | chr3_4:41294928-41294947 | None:intergenic | 35.0% | |
| GAAAATGGGTCAGTTATTCT+GGG | - | chr3_4:41295218-41295237 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+TGG | - | chr3_4:41295219-41295238 | None:intergenic | 35.0% | |
| !!! | AAGGTGAGGGTTTTGAAATG+GGG | - | chr3_4:41294297-41294316 | None:intergenic | 40.0% |
| !!! | GAAGGTGAGGGTTTTGAAAT+GGG | - | chr3_4:41294298-41294317 | None:intergenic | 40.0% |
| AACGAGCTCTTTCTTGATAG+GGG | - | chr3_4:41294332-41294351 | None:intergenic | 40.0% | |
| CAACGAGCTCTTTCTTGATA+GGG | - | chr3_4:41294333-41294352 | None:intergenic | 40.0% | |
| ACAACGAGCTCTTTCTTGAT+AGG | - | chr3_4:41294334-41294353 | None:intergenic | 40.0% | |
| ACTTCTTTGTAAACAGGAGC+AGG | - | chr3_4:41294388-41294407 | None:intergenic | 40.0% | |
| ! | GAAATGGTGAATGTGGGTTA+GGG | - | chr3_4:41294423-41294442 | None:intergenic | 40.0% |
| TGAAATGGTGAATGTGGGTT+AGG | - | chr3_4:41294424-41294443 | None:intergenic | 40.0% | |
| TGTCAAATAAATTGGGACGG+AGG | + | chr3_4:41295409-41295428 | Msa0500740:intron | 40.0% | |
| GTCAAATAAATTGGGACGGA+GGG | + | chr3_4:41295410-41295429 | Msa0500740:intron | 40.0% | |
| !!! | AAGGTGAGGGTTTTGAAATG+GGG | - | chr3_4:41294297-41294316 | None:intergenic | 40.0% |
| !!! | GAAGGTGAGGGTTTTGAAAT+GGG | - | chr3_4:41294298-41294317 | None:intergenic | 40.0% |
| AACGAGCTCTTTCTTGATAG+GGG | - | chr3_4:41294332-41294351 | None:intergenic | 40.0% | |
| CAACGAGCTCTTTCTTGATA+GGG | - | chr3_4:41294333-41294352 | None:intergenic | 40.0% | |
| ACAACGAGCTCTTTCTTGAT+AGG | - | chr3_4:41294334-41294353 | None:intergenic | 40.0% | |
| ACTTCTTTGTAAACAGGAGC+AGG | - | chr3_4:41294388-41294407 | None:intergenic | 40.0% | |
| ! | GAAATGGTGAATGTGGGTTA+GGG | - | chr3_4:41294423-41294442 | None:intergenic | 40.0% |
| TGAAATGGTGAATGTGGGTT+AGG | - | chr3_4:41294424-41294443 | None:intergenic | 40.0% | |
| TGTCAAATAAATTGGGACGG+AGG | + | chr3_4:41295409-41295428 | Msa0500740:intron | 40.0% | |
| GTCAAATAAATTGGGACGGA+GGG | + | chr3_4:41295410-41295429 | Msa0500740:intron | 40.0% | |
| ACTACACAGAGCTGAGAACT+TGG | + | chr3_4:41294126-41294145 | Msa0500740:five_prime_UTR | 45.0% | |
| GTGAAGTGATTGAGAGAGCT+TGG | - | chr3_4:41294263-41294282 | None:intergenic | 45.0% | |
| !!! | AGGTGAGGGTTTTGAAATGG+GGG | - | chr3_4:41294296-41294315 | None:intergenic | 45.0% |
| !!! | GGAAGGTGAGGGTTTTGAAA+TGG | - | chr3_4:41294299-41294318 | None:intergenic | 45.0% |
| ! | CTCGTTGTTGTTCGAAGATC+CGG | + | chr3_4:41294346-41294365 | Msa0500740:CDS | 45.0% |
| GTAAACAGGAGCAGGCATAT+TGG | - | chr3_4:41294380-41294399 | None:intergenic | 45.0% | |
| ! | ATGGGTCAGTTATTCTGGGA+CGG | - | chr3_4:41295214-41295233 | None:intergenic | 45.0% |
| ACTACACAGAGCTGAGAACT+TGG | + | chr3_4:41294126-41294145 | Msa0500740:five_prime_UTR | 45.0% | |
| GTGAAGTGATTGAGAGAGCT+TGG | - | chr3_4:41294263-41294282 | None:intergenic | 45.0% | |
| !!! | AGGTGAGGGTTTTGAAATGG+GGG | - | chr3_4:41294296-41294315 | None:intergenic | 45.0% |
| !!! | GGAAGGTGAGGGTTTTGAAA+TGG | - | chr3_4:41294299-41294318 | None:intergenic | 45.0% |
| ! | CTCGTTGTTGTTCGAAGATC+CGG | + | chr3_4:41294346-41294365 | Msa0500740:CDS | 45.0% |
| GTAAACAGGAGCAGGCATAT+TGG | - | chr3_4:41294380-41294399 | None:intergenic | 45.0% | |
| ! | ATGGGTCAGTTATTCTGGGA+CGG | - | chr3_4:41295214-41295233 | None:intergenic | 45.0% |
| !!! | TATTTAAAAGTTTATATTTT+TGG | - | chr3_4:41295045-41295064 | None:intergenic | 5.0% |
| !!! | TATTTAAAAGTTTATATTTT+TGG | - | chr3_4:41295045-41295064 | None:intergenic | 5.0% |
| CATCATACGAAGAGAGTCGC+CGG | + | chr3_4:41294191-41294210 | Msa0500740:CDS | 50.0% | |
| AGAGAGTCGCCGGAAAAGAA+TGG | + | chr3_4:41294201-41294220 | Msa0500740:CDS | 50.0% | |
| ! | TCTTTCTTGATAGGGGTGCG+AGG | - | chr3_4:41294325-41294344 | None:intergenic | 50.0% |
| !! | GGTGAATGTGGGTTAGGGTT+TGG | - | chr3_4:41294418-41294437 | None:intergenic | 50.0% |
| !! | GTCAGTTATTCTGGGACGGA+GGG | - | chr3_4:41295210-41295229 | None:intergenic | 50.0% |
| CATCATACGAAGAGAGTCGC+CGG | + | chr3_4:41294191-41294210 | Msa0500740:CDS | 50.0% | |
| AGAGAGTCGCCGGAAAAGAA+TGG | + | chr3_4:41294201-41294220 | Msa0500740:CDS | 50.0% | |
| ! | TCTTTCTTGATAGGGGTGCG+AGG | - | chr3_4:41294325-41294344 | None:intergenic | 50.0% |
| !! | GGTGAATGTGGGTTAGGGTT+TGG | - | chr3_4:41294418-41294437 | None:intergenic | 50.0% |
| !! | GTCAGTTATTCTGGGACGGA+GGG | - | chr3_4:41295210-41295229 | None:intergenic | 50.0% |
| GTGCGAGGTTTGGAAGGTGA+GGG | - | chr3_4:41294310-41294329 | None:intergenic | 55.0% | |
| ! | ATAGGGGTGCGAGGTTTGGA+AGG | - | chr3_4:41294316-41294335 | None:intergenic | 55.0% |
| ! | CTTGATAGGGGTGCGAGGTT+TGG | - | chr3_4:41294320-41294339 | None:intergenic | 55.0% |
| AGGCATATTGGCGACACGAC+CGG | - | chr3_4:41294368-41294387 | None:intergenic | 55.0% | |
| !! | GGTCAGTTATTCTGGGACGG+AGG | - | chr3_4:41295211-41295230 | None:intergenic | 55.0% |
| GTGCGAGGTTTGGAAGGTGA+GGG | - | chr3_4:41294310-41294329 | None:intergenic | 55.0% | |
| ! | ATAGGGGTGCGAGGTTTGGA+AGG | - | chr3_4:41294316-41294335 | None:intergenic | 55.0% |
| ! | CTTGATAGGGGTGCGAGGTT+TGG | - | chr3_4:41294320-41294339 | None:intergenic | 55.0% |
| AGGCATATTGGCGACACGAC+CGG | - | chr3_4:41294368-41294387 | None:intergenic | 55.0% | |
| !! | GGTCAGTTATTCTGGGACGG+AGG | - | chr3_4:41295211-41295230 | None:intergenic | 55.0% |
| GGTGCGAGGTTTGGAAGGTG+AGG | - | chr3_4:41294311-41294330 | None:intergenic | 60.0% | |
| GGTGCGAGGTTTGGAAGGTG+AGG | - | chr3_4:41294311-41294330 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41294068 | 41295539 | 41294068 | ID=Msa0500740;Name=Msa0500740 |
| chr3_4 | mRNA | 41294068 | 41295539 | 41294068 | ID=Msa0500740-mRNA-1;Parent=Msa0500740;Name=Msa0500740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=107|0.5|0.33|0.66|1|1|3|0|94 |
| chr3_4 | exon | 41294068 | 41294405 | 41294068 | ID=Msa0500740-mRNA-1:exon:8586;Parent=Msa0500740-mRNA-1 |
| chr3_4 | exon | 41294493 | 41294536 | 41294493 | ID=Msa0500740-mRNA-1:exon:8587;Parent=Msa0500740-mRNA-1 |
| chr3_4 | exon | 41295530 | 41295539 | 41295530 | ID=Msa0500740-mRNA-1:exon:8588;Parent=Msa0500740-mRNA-1 |
| chr3_4 | five_prime_UTR | 41294068 | 41294174 | 41294068 | ID=Msa0500740-mRNA-1:five_prime_utr;Parent=Msa0500740-mRNA-1 |
| chr3_4 | CDS | 41294175 | 41294405 | 41294175 | ID=Msa0500740-mRNA-1:cds;Parent=Msa0500740-mRNA-1 |
| chr3_4 | CDS | 41294493 | 41294536 | 41294493 | ID=Msa0500740-mRNA-1:cds;Parent=Msa0500740-mRNA-1 |
| chr3_4 | CDS | 41295530 | 41295539 | 41295530 | ID=Msa0500740-mRNA-1:cds;Parent=Msa0500740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
